AlfalfaGEDB | MS.gene71681

M. sativa cultivar XinJiangDaYe / MS.gene71681

KEGG: K00083
GO: GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0008152 GO:0008270 GO:0016491 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0055114
PFAM: PF00107.29 PF08240.15

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71681.t1	P31656.1	100	358	0	0	1	358	1	358	7.50E-204	719.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71681.t1	P31656	100.0	358	0	0	1	358	1	358	1.8e-206	719.5

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71681.t1	A0A072VPZ8	98.6	358	5	0	1	358	1	358	1.1e-201	711.8

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04920	MS.gene71681	0.810952	8.92E-51	-1.69E-46
MS.gene049499	MS.gene71681	0.804211	2.41E-49	-1.69E-46
MS.gene051209	MS.gene71681	0.815325	9.80E-52	-1.69E-46
MS.gene053272	MS.gene71681	-0.823544	1.31E-53	-1.69E-46
MS.gene054641	MS.gene71681	0.802275	6.06E-49	-1.69E-46
MS.gene057174	MS.gene71681	0.814186	1.75E-51	-1.69E-46
MS.gene057371	MS.gene71681	0.801863	7.37E-49	-1.69E-46
MS.gene058781	MS.gene71681	0.810133	1.34E-50	-1.69E-46
MS.gene05952	MS.gene71681	0.802731	4.88E-49	-1.69E-46
MS.gene059634	MS.gene71681	0.811961	5.39E-51	-1.69E-46
MS.gene060522	MS.gene71681	0.865223	6.90E-65	-1.69E-46
MS.gene060777	MS.gene71681	0.826568	2.53E-54	-1.69E-46
MS.gene060937	MS.gene71681	0.802162	6.39E-49	-1.69E-46
MS.gene061160	MS.gene71681	0.800627	1.32E-48	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene068618	MS.gene71681	PPI
MS.gene71681	MS.gene069153	PPI
MS.gene068612	MS.gene71681	PPI
MS.gene71681	MS.gene027823	PPI
MS.gene069151	MS.gene71681	PPI
MS.gene069145	MS.gene71681	PPI
MS.gene71681	MS.gene070869	PPI
MS.gene070876	MS.gene71681	PPI
MS.gene71681	MS.gene02214	PPI
MS.gene070874	MS.gene71681	PPI
MS.gene069146	MS.gene71681	PPI
MS.gene71681	MS.gene069152	PPI
MS.gene008956	MS.gene71681	PPI
MS.gene71681	MS.gene90766	PPI
MS.gene71681	MS.gene070872	PPI
MS.gene28444	MS.gene71681	PPI
MS.gene027824	MS.gene71681	PPI
MS.gene068619	MS.gene71681	PPI
MS.gene027818	MS.gene71681	PPI
MS.gene070871	MS.gene71681	PPI
MS.gene027816	MS.gene71681	PPI
MS.gene068613	MS.gene71681	PPI
MS.gene70270	MS.gene71681	PPI
MS.gene069147	MS.gene71681	PPI
MS.gene068614	MS.gene71681	PPI
MS.gene027821	MS.gene71681	PPI
MS.gene71681	MS.gene46316	PPI
MS.gene71681	MS.gene036724	PPI
MS.gene58124	MS.gene71681	PPI
MS.gene71681	MS.gene01230	PPI
MS.gene002258	MS.gene71681	PPI
MS.gene027825	MS.gene71681	PPI
MS.gene027817	MS.gene71681	PPI
MS.gene58045	MS.gene71681	PPI
MS.gene030674	MS.gene71681	PPI
MS.gene070877	MS.gene71681	PPI
MS.gene002257	MS.gene71681	PPI
MS.gene71681	MS.gene068615	PPI
MS.gene068620	MS.gene71681	PPI
MS.gene048392	MS.gene71681	PPI
MS.gene070879	MS.gene71681	PPI
MS.gene027820	MS.gene71681	PPI
MS.gene71681	MS.gene027819	PPI
MS.gene71681	MS.gene069144	PPI
MS.gene069148	MS.gene71681	PPI
MS.gene070868	MS.gene71681	PPI
MS.gene069154	MS.gene71681	PPI
MS.gene068611	MS.gene71681	PPI
MS.gene068621	MS.gene71681	PPI
MS.gene71681	MS.gene70270	PPI
MS.gene070881	MS.gene71681	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71681.t1	MTR_1g107425	98.603	358	5	0	1	358	1	358	0.0	723
MS.gene71681.t1	MTR_1g107425	97.635	296	7	0	1	296	1	296	0.0	592
MS.gene71681.t1	MTR_5g031360	52.023	346	166	0	9	354	13	358	4.51e-124	361
MS.gene71681.t1	MTR_5g031190	51.312	343	167	0	9	351	11	353	5.47e-123	358
MS.gene71681.t1	MTR_5g031300	52.000	350	168	0	2	351	5	354	3.98e-122	356
MS.gene71681.t1	MTR_5g031250	52.507	339	161	0	13	351	15	353	1.24e-121	355
MS.gene71681.t1	MTR_4g115300	50.708	353	172	1	1	351	1	353	1.99e-120	352
MS.gene71681.t1	MTR_5g031310	50.729	343	169	0	9	351	12	354	2.19e-120	352
MS.gene71681.t1	MTR_5g031305	50.146	343	171	0	9	351	12	354	7.20e-120	351
MS.gene71681.t1	MTR_5g031230	52.507	339	161	0	13	351	15	353	1.37e-119	350
MS.gene71681.t1	MTR_5g031390	50.729	343	169	0	9	351	11	353	6.08e-119	348
MS.gene71681.t1	MTR_8g068190	52.478	343	163	0	9	351	11	353	1.57e-118	347
MS.gene71681.t1	MTR_5g031210	53.097	339	159	0	13	351	15	353	1.70e-116	342
MS.gene71681.t1	MTR_5g031430	51.297	347	169	0	8	354	10	356	8.14e-114	335
MS.gene71681.t1	MTR_5g031180	51.020	343	168	0	9	351	11	353	1.16e-112	332
MS.gene71681.t1	MTR_1g025950	49.280	347	175	1	9	354	10	356	5.11e-109	323
MS.gene71681.t1	MTR_8g092630	50.294	340	168	1	15	354	74	412	4.28e-107	320
MS.gene71681.t1	MTR_2g009810	44.759	353	193	2	3	354	53	404	2.26e-99	300
MS.gene71681.t1	MTR_5g031250	55.895	229	101	0	11	239	13	241	1.28e-83	254
MS.gene71681.t1	MTR_2g009820	41.463	246	138	4	114	354	8	252	2.10e-51	172
MS.gene71681.t1	MTR_5g031290	43.636	110	62	0	245	354	80	189	1.91e-26	104
MS.gene71681.t1	MTR_5g031290	52.174	69	32	1	9	76	11	79	1.21e-18	83.2
MS.gene71681.t1	MTR_8g095220	25.269	372	242	10	13	351	56	424	6.82e-24	102
MS.gene71681.t1	MTR_8g095220	28.689	244	149	6	13	234	56	296	6.52e-21	92.4
MS.gene71681.t1	MTR_5g087710	25.000	340	221	9	35	342	44	381	6.04e-13	69.7
MS.gene71681.t1	MTR_3g089977	23.582	335	226	8	37	342	37	370	4.04e-11	64.3
MS.gene71681.t1	MTR_3g089940	23.881	335	225	8	37	342	37	370	4.04e-11	64.3
MS.gene71681.t1	MTR_3g089940	23.881	335	225	8	37	342	37	370	4.15e-11	63.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene71681.t1	AT3G19450	76.536	358	84	0	1	358	1	358	0.0	525
MS.gene71681.t1	AT4G34230	77.311	357	80	1	1	357	1	356	5.13e-178	498
MS.gene71681.t1	AT4G34230	77.031	357	81	1	1	357	1	356	5.96e-177	495
MS.gene71681.t1	AT2G21890	49.432	352	177	1	8	358	4	355	2.22e-121	355
MS.gene71681.t1	AT4G39330	50.877	342	168	0	13	354	15	356	2.32e-120	352
MS.gene71681.t1	AT2G21730	49.292	353	177	2	8	358	4	356	6.24e-120	351
MS.gene71681.t1	AT4G37970	48.830	342	175	0	13	354	16	357	3.57e-118	347
MS.gene71681.t1	AT4G37990	51.009	347	170	0	8	354	6	352	1.49e-113	335
MS.gene71681.t1	AT4G37980	47.839	347	181	0	8	354	6	352	7.60e-108	320
MS.gene71681.t1	AT1G72680	43.503	354	199	1	1	354	1	353	1.51e-97	293
MS.gene71681.t1	AT4G39330	49.481	289	146	0	13	301	15	303	1.31e-96	290
MS.gene71681.t1	AT4G37970	47.857	280	146	0	13	292	16	295	2.03e-89	271
MS.gene71681.t1	AT4G37980	48.239	284	146	1	8	290	6	289	1.04e-82	254
MS.gene71681.t1	AT4G37970	50.000	228	114	0	13	240	16	243	7.24e-75	232
MS.gene71681.t1	AT4G37970	50.000	228	114	0	13	240	16	243	1.10e-74	232
MS.gene71681.t1	AT5G63620	26.005	373	238	12	13	351	58	426	5.38e-24	102
MS.gene71681.t1	AT5G63620	25.737	373	239	12	13	351	58	426	8.65e-24	102
MS.gene71681.t1	AT5G63620	28.870	239	145	6	13	229	58	293	1.71e-21	94.0
MS.gene71681.t1	AT1G32780	25.439	342	215	10	37	339	37	377	4.65e-14	73.2
MS.gene71681.t1	AT1G22430	26.254	339	211	13	37	340	42	376	1.95e-13	71.2
MS.gene71681.t1	AT1G22430	26.254	339	211	13	37	340	42	376	1.95e-13	71.2
MS.gene71681.t1	AT1G64710	23.512	336	224	10	37	340	13	347	1.33e-11	65.5
MS.gene71681.t1	AT1G64710	23.512	336	224	10	37	340	36	370	1.72e-11	65.5
MS.gene71681.t1	AT4G22110	24.478	335	218	11	37	338	43	375	2.13e-11	65.1
MS.gene71681.t1	AT4G22110	24.478	335	218	11	37	338	43	375	2.13e-11	65.1

Find 87 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TACAGTCCACTTTCACATTT+TGG	0.140332	1.1:+77128353	MS.gene71681:CDS
CAGAGGAGATGTTGGAGTTT+TGG	0.195897	1.1:+77129128	MS.gene71681:CDS
CCCAGGAACCATAGGATAAT+TGG	0.245188	1.1:-77127304	None:intergenic
CATGATTGAAATTGTAACTA+TGG	0.253443	1.1:+77129171	MS.gene71681:CDS
TCCAATTATCCTATGGTTCC+TGG	0.314697	1.1:+77127303	MS.gene71681:CDS
CTTTCATTGCTCAAAATTGA+TGG	0.339894	1.1:+77128632	MS.gene71681:CDS
TGGGCTAAGAGGTGGAATAT+TGG	0.354895	1.1:+77128388	MS.gene71681:CDS
TCAATTACTGGAAGCTTTGT+TGG	0.375046	1.1:+77129091	MS.gene71681:CDS
GGGCTAAGAGGTGGAATATT+GGG	0.377765	1.1:+77128389	MS.gene71681:CDS
CATAGTTACAATTTCAATCA+TGG	0.394791	1.1:-77129170	None:intergenic
GGCTCAAGAGGGTGACCAAC+AGG	0.414159	1.1:-77128605	None:intergenic
TCTTCAATTTGTTACACCTA+TGG	0.415794	1.1:+77128688	MS.gene71681:CDS
AAAGAGGCACTTGAGGATCT+TGG	0.422297	1.1:+77128500	MS.gene71681:CDS
TGATGGGAAATTGATCTTGA+TGG	0.430428	1.1:+77128649	MS.gene71681:CDS
AACAATGGTGCAACTTGCTC+TGG	0.430947	1.1:-77128311	None:intergenic
TGCTCTGGTGCCAATCCCTC+TGG	0.434175	1.1:-77128296	None:intergenic
CAATTACTGGAAGCTTTGTT+GGG	0.441579	1.1:+77129092	MS.gene71681:CDS
GTGAAAGTAGCAAAGGCATT+AGG	0.442216	1.1:+77128437	MS.gene71681:CDS
AGAAGAATGATGTGAGGTAT+AGG	0.457166	1.1:+77129224	MS.gene71681:CDS
GTAGGGAGGAAGTCAATTAC+TGG	0.465862	1.1:+77129079	MS.gene71681:intron
TTGTTAGCTCAGATACTGTT+GGG	0.467194	1.1:+77128537	MS.gene71681:CDS
CTTGTTAGCTCAGATACTGT+TGG	0.468029	1.1:+77128536	MS.gene71681:CDS
TGGCATGTCCAATTATCCTA+TGG	0.476856	1.1:+77127296	MS.gene71681:CDS
GAAGGAGACAGAGGAGATGT+TGG	0.486422	1.1:+77129120	MS.gene71681:CDS
TACAATGATGTTTACACTGA+CGG	0.486763	1.1:+77127644	MS.gene71681:CDS
CTCCATACACATACACTCTC+AGG	0.487023	1.1:+77127055	MS.gene71681:CDS
TTTCATTGCTCAAAATTGAT+GGG	0.487627	1.1:+77128633	MS.gene71681:CDS
AATACTGCAACAAGAAGATC+TGG	0.488627	1.1:+77127618	MS.gene71681:CDS
TGTGAAAATACCAGAGGGAT+TGG	0.495073	1.1:+77128286	MS.gene71681:CDS
TTGGCTGCAAAAGACCCTTC+CGG	0.496088	1.1:+77127024	MS.gene71681:CDS
CACCTGAGAGTGTATGTGTA+TGG	0.504281	1.1:-77127057	None:intergenic
TTCAGCCCAAAATGTGAAAG+TGG	0.506368	1.1:-77128359	None:intergenic
AGAGGTGGAATATTGGGTCT+TGG	0.506833	1.1:+77128395	MS.gene71681:CDS
GTTGCACCATTGTTGTGTGC+AGG	0.511420	1.1:+77128320	MS.gene71681:CDS
CTTGGTGGAGTAGGACACAT+GGG	0.512497	1.1:+77128413	MS.gene71681:CDS
TGTGTATGGAGTGAGAATTC+CGG	0.512818	1.1:-77127043	None:intergenic
GGTGGAATATTGGGTCTTGG+TGG	0.517471	1.1:+77128398	MS.gene71681:CDS
CTGAAAACACCTGGGCTAAG+AGG	0.518039	1.1:+77128377	MS.gene71681:CDS
CCAATTATCCTATGGTTCCT+GGG	0.521261	1.1:+77127304	MS.gene71681:CDS
GTGGGAGTTGGTCTTCTCGT+TGG	0.525528	1.1:+77127554	MS.gene71681:CDS
GTTCAAAGTGGGAGAAATTG+TGG	0.526442	1.1:+77127535	MS.gene71681:CDS
GTGGGAGAAATTGTGGGAGT+TGG	0.528018	1.1:+77127542	MS.gene71681:CDS
AGAAAGAACAACAGTAGGAT+TGG	0.528316	1.1:+77127005	MS.gene71681:CDS
GAAGAAGAAAGAGGCACTTG+AGG	0.529985	1.1:+77128493	MS.gene71681:CDS
TGTCAAAGGAAGTAAATTTG+AGG	0.531733	1.1:+77129258	MS.gene71681:CDS
GGTTGGTGAGGTACTAGAGG+TGG	0.538320	1.1:+77127496	MS.gene71681:CDS
CATACATACCCAGGAACCAT+AGG	0.538858	1.1:-77127312	None:intergenic
GATGGGAAATTGATCTTGAT+GGG	0.539815	1.1:+77128650	MS.gene71681:CDS
GTTACACCTATGGTCATGCT+AGG	0.542756	1.1:+77128698	MS.gene71681:CDS
TTCAAAGTGGGAGAAATTGT+GGG	0.545521	1.1:+77127536	MS.gene71681:CDS
ATCATTGACACTGTTCCTGT+TGG	0.558930	1.1:+77128590	MS.gene71681:CDS
ATATTGGGTCTTGGTGGAGT+AGG	0.559461	1.1:+77128404	MS.gene71681:CDS
TTCTGATAAGAAGAAGAAAG+AGG	0.560483	1.1:+77128484	MS.gene71681:CDS
AGGTGGGTTCAAATGTTACA+AGG	0.565769	1.1:+77127513	MS.gene71681:CDS
GTTGGTGAGGTACTAGAGGT+GGG	0.567462	1.1:+77127497	MS.gene71681:CDS
AGGTTCGTTGTGGATGTCAA+AGG	0.573106	1.1:+77129244	MS.gene71681:CDS
TACATCAAAATTCATTACTG+TGG	0.582501	1.1:+77127234	MS.gene71681:CDS
TTGGTGGAGTAGGACACATG+GGG	0.596788	1.1:+77128414	MS.gene71681:CDS
AAATGTTACAAGGTTCAAAG+TGG	0.597798	1.1:+77127523	MS.gene71681:CDS
AATGTTACAAGGTTCAAAGT+GGG	0.599126	1.1:+77127524	MS.gene71681:CDS
TAGGTGTAACAAATTGAAGA+GGG	0.600517	1.1:-77128685	None:intergenic
ATAGGTGTAACAAATTGAAG+AGG	0.601584	1.1:-77128686	None:intergenic
AATATTCCACCTCTTAGCCC+AGG	0.603820	1.1:-77128386	None:intergenic
AAAACACCTGGGCTAAGAGG+TGG	0.604672	1.1:+77128380	MS.gene71681:CDS
AATGAAAGATAAGGCTCAAG+AGG	0.608696	1.1:-77128617	None:intergenic
TCTTGGTGGAGTAGGACACA+TGG	0.610428	1.1:+77128412	MS.gene71681:CDS
GCTGCAGAAAGAACAACAGT+AGG	0.613158	1.1:+77127000	MS.gene71681:CDS
TGTGAGGTATAGGTTCGTTG+TGG	0.619087	1.1:+77129234	MS.gene71681:CDS
AAGCTTTGTTGGGAGCGTGA+AGG	0.622128	1.1:+77129102	MS.gene71681:CDS
TTTGTTGTGAAAATACCAGA+GGG	0.624457	1.1:+77128281	MS.gene71681:CDS
CAGGCATGAAGTGGTTGGTG+AGG	0.629500	1.1:+77127484	MS.gene71681:intron
CACTGACGGAAAGATCACTC+AGG	0.632595	1.1:+77127658	MS.gene71681:CDS
TTAAAACTATGCAGAAACAC+AGG	0.640578	1.1:+77127198	MS.gene71681:intron
ACTATGCAGAAACACAGGAC+CGG	0.643408	1.1:+77127203	MS.gene71681:intron
GTCACACCTGCACACAACAA+TGG	0.650120	1.1:-77128326	None:intergenic
TGGGAGCGTGAAGGAGACAG+AGG	0.652158	1.1:+77129111	MS.gene71681:CDS
ATGAAAGATAAGGCTCAAGA+GGG	0.658619	1.1:-77128616	None:intergenic
GATTGGAGAAGAATGATGTG+AGG	0.663743	1.1:+77129218	MS.gene71681:CDS
GTTTGTTGTGAAAATACCAG+AGG	0.664399	1.1:+77128280	MS.gene71681:CDS
AGTGGTTGGTGAGGTACTAG+AGG	0.677629	1.1:+77127493	MS.gene71681:CDS
ACTGACGGAAAGATCACTCA+GGG	0.682017	1.1:+77127659	MS.gene71681:CDS
TATGGAGTGAGAATTCCGGA+AGG	0.698628	1.1:-77127039	None:intergenic
ATGGAGTGAGAATTCCGGAA+GGG	0.705897	1.1:-77127038	None:intergenic
AAGAGCTTATCACAGTGACA+TGG	0.707377	1.1:-77128463	None:intergenic
AGGTGTAACAAATTGAAGAG+GGG	0.708980	1.1:-77128684	None:intergenic
GACGGAAAGATCACTCAGGG+TGG	0.713421	1.1:+77127662	MS.gene71681:CDS
TGGTGGAGTAGGACACATGG+GGG	0.751756	1.1:+77128415	MS.gene71681:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATAAAAGTAATTAATTTAGT+TGG	-	chr1.1:77128164-77128183	None:intergenic	10.0%
!!	TAAAAATTACTAACAAATTT+AGG	-	chr1.1:77128838-77128857	None:intergenic	10.0%
!!	TAAAAGTAATTAATTTAGTT+GGG	-	chr1.1:77128163-77128182	None:intergenic	10.0%
!!!	AATCATCAATGTTTTTTAAA+TGG	-	chr1.1:77127818-77127837	None:intergenic	15.0%
!!!	ATCATCAATGTTTTTTAAAT+GGG	-	chr1.1:77127817-77127836	None:intergenic	15.0%
!!!	ATGTTATGAAAAATGTTTTA+TGG	+	chr1.1:77127983-77128002	MS.gene71681:intron	15.0%
!!!	CTTTTAAATAACTTGTAATT+AGG	+	chr1.1:77128886-77128905	MS.gene71681:intron	15.0%
!!!	TTATTTAAAAATCTAGTTCA+AGG	+	chr1.1:77128936-77128955	MS.gene71681:intron	15.0%
!!	AATTTAGATATGTTCAATTG+TGG	+	chr1.1:77128079-77128098	MS.gene71681:intron	20.0%
!!	AGTTCACAGTAAAAAAAATA+TGG	-	chr1.1:77128126-77128145	None:intergenic	20.0%
!!	ATCTATCAAATTATTATGTC+CGG	+	chr1.1:77127360-77127379	MS.gene71681:intron	20.0%
!!	TTAAAATCTTCAATAGTCAA+GGG	-	chr1.1:77128780-77128799	None:intergenic	20.0%
!!	TTAGAAGATATCATTACAAT+TGG	-	chr1.1:77129040-77129059	None:intergenic	20.0%
!!	TTTAAACTGATTATGTGTTT+GGG	+	chr1.1:77128243-77128262	MS.gene71681:intron	20.0%
!!!	ATTAATTACTTTTATGAACC+TGG	+	chr1.1:77128169-77128188	MS.gene71681:intron	20.0%
!!!	CTTTAAGTTATTGAACAATT+TGG	-	chr1.1:77128978-77128997	None:intergenic	20.0%
!!!	TATGATTGTTTTGAAAAAAC+AGG	+	chr1.1:77127465-77127484	MS.gene71681:intron	20.0%
!!!	TTTAAAATCTTCAATAGTCA+AGG	-	chr1.1:77128781-77128800	None:intergenic	20.0%
!!!	TTTTAAACTGATTATGTGTT+TGG	+	chr1.1:77128242-77128261	MS.gene71681:intron	20.0%
!!!	TTTTAGCTTAGTTATTGAAT+AGG	+	chr1.1:77128753-77128772	MS.gene71681:intron	20.0%
!	CATAGTTACAATTTCAATCA+TGG	-	chr1.1:77129173-77129192	None:intergenic	25.0%
!	CATGATTGAAATTGTAACTA+TGG	+	chr1.1:77129171-77129190	MS.gene71681:CDS	25.0%
!	CCTTAAAATTAATCGAAACA+CGG	-	chr1.1:77127402-77127421	None:intergenic	25.0%
!	GTAATTAGGTCTTGAATTTA+GGG	+	chr1.1:77128900-77128919	MS.gene71681:intron	25.0%
!	TAACAGGTGTGAAAAAAATT+GGG	-	chr1.1:77128012-77128031	None:intergenic	25.0%
!	TACATCAAAATTCATTACTG+TGG	+	chr1.1:77127234-77127253	MS.gene71681:CDS	25.0%
!	TGTAATTAGGTCTTGAATTT+AGG	+	chr1.1:77128899-77128918	MS.gene71681:intron	25.0%
!	TTAAACTGATTATGTGTTTG+GGG	+	chr1.1:77128244-77128263	MS.gene71681:intron	25.0%
!	TTAACAGGTGTGAAAAAAAT+TGG	-	chr1.1:77128013-77128032	None:intergenic	25.0%
!	TTTCATTGCTCAAAATTGAT+GGG	+	chr1.1:77128633-77128652	MS.gene71681:CDS	25.0%
!!	ATTTTGAGCAATGAAAGATA+AGG	-	chr1.1:77128629-77128648	None:intergenic	25.0%
!!!	ATTTTGATGTAAACATCATC+CGG	-	chr1.1:77127225-77127244	None:intergenic	25.0%
!!!	TAACAAAGCTTTTGAAAGAT+TGG	+	chr1.1:77129201-77129220	MS.gene71681:CDS	25.0%
!!!	TTATTACTTTTGTTCAACGA+CGG	-	chr1.1:77127702-77127721	None:intergenic	25.0%
	AAATGTTACAAGGTTCAAAG+TGG	+	chr1.1:77127523-77127542	MS.gene71681:CDS	30.0%
	AATGTTACAAGGTTCAAAGT+GGG	+	chr1.1:77127524-77127543	MS.gene71681:CDS	30.0%
	ATAGGTGTAACAAATTGAAG+AGG	-	chr1.1:77128689-77128708	None:intergenic	30.0%
	ATCATTGATGAGAAAGAAGA+AGG	-	chr1.1:77128733-77128752	None:intergenic	30.0%
	CAAGTTTGTATGTGATTAAC+AGG	-	chr1.1:77128028-77128047	None:intergenic	30.0%
	CACCAAATCAAAAATGATCT+TGG	+	chr1.1:77127276-77127295	MS.gene71681:CDS	30.0%
	CTTTCATTGCTCAAAATTGA+TGG	+	chr1.1:77128632-77128651	MS.gene71681:CDS	30.0%
	TACAATGATGTTTACACTGA+CGG	+	chr1.1:77127644-77127663	MS.gene71681:CDS	30.0%
	TAGGTGTAACAAATTGAAGA+GGG	-	chr1.1:77128688-77128707	None:intergenic	30.0%
	TGTCAAAGGAAGTAAATTTG+AGG	+	chr1.1:77129258-77129277	MS.gene71681:CDS	30.0%
	TTAAAACTATGCAGAAACAC+AGG	+	chr1.1:77127198-77127217	MS.gene71681:intron	30.0%
	TTCTGATAAGAAGAAGAAAG+AGG	+	chr1.1:77128484-77128503	MS.gene71681:CDS	30.0%
!	CCGTGTTTCGATTAATTTTA+AGG	+	chr1.1:77127399-77127418	MS.gene71681:intron	30.0%
!	TTTGTTGTGAAAATACCAGA+GGG	+	chr1.1:77128281-77128300	MS.gene71681:CDS	30.0%
!	TTTTATGAACCTGGTGTAAA+AGG	+	chr1.1:77128178-77128197	MS.gene71681:intron	30.0%
!!	GTGTGGAATTTAATTTGACA+CGG	-	chr1.1:77127773-77127792	None:intergenic	30.0%
!!	TCTTCAATTTGTTACACCTA+TGG	+	chr1.1:77128688-77128707	MS.gene71681:CDS	30.0%
!!	TGCCAAGATCATTTTTGATT+TGG	-	chr1.1:77127281-77127300	None:intergenic	30.0%
	AATACTGCAACAAGAAGATC+TGG	+	chr1.1:77127618-77127637	MS.gene71681:CDS	35.0%
	AATGAAAGATAAGGCTCAAG+AGG	-	chr1.1:77128620-77128639	None:intergenic	35.0%
	AGAAAGAACAACAGTAGGAT+TGG	+	chr1.1:77127005-77127024	MS.gene71681:CDS	35.0%
	AGAAGAATGATGTGAGGTAT+AGG	+	chr1.1:77129224-77129243	MS.gene71681:CDS	35.0%
	AGAAGTTAACATACATACCC+AGG	-	chr1.1:77127324-77127343	None:intergenic	35.0%
	AGGTGTAACAAATTGAAGAG+GGG	-	chr1.1:77128687-77128706	None:intergenic	35.0%
	ATGAAAGATAAGGCTCAAGA+GGG	-	chr1.1:77128619-77128638	None:intergenic	35.0%
	ATTGATGAGAAAGAAGAAGG+TGG	-	chr1.1:77128730-77128749	None:intergenic	35.0%
	GATGGGAAATTGATCTTGAT+GGG	+	chr1.1:77128650-77128669	MS.gene71681:CDS	35.0%
	TATTGATGTTGTGTTGCGTA+GGG	+	chr1.1:77129062-77129081	MS.gene71681:intron	35.0%
	TCAGAAATGCATAAAACGTG+TGG	-	chr1.1:77127790-77127809	None:intergenic	35.0%
	TGATGGGAAATTGATCTTGA+TGG	+	chr1.1:77128649-77128668	MS.gene71681:CDS	35.0%
	TTCAAAGTGGGAGAAATTGT+GGG	+	chr1.1:77127536-77127555	MS.gene71681:CDS	35.0%
	TTGAAAAAACAGGCATGAAG+TGG	+	chr1.1:77127475-77127494	MS.gene71681:intron	35.0%
	TTGATGAGAAAGAAGAAGGT+GGG	-	chr1.1:77128729-77128748	None:intergenic	35.0%
	TTGTTAGCTCAGATACTGTT+GGG	+	chr1.1:77128537-77128556	MS.gene71681:CDS	35.0%
!	ACAGTCCACTTTCACATTTT+GGG	+	chr1.1:77128354-77128373	MS.gene71681:CDS	35.0%
!	TACAGTCCACTTTCACATTT+TGG	+	chr1.1:77128353-77128372	MS.gene71681:CDS	35.0%
!	TCAATTACTGGAAGCTTTGT+TGG	+	chr1.1:77129091-77129110	MS.gene71681:CDS	35.0%
!	TTTCTAACACCTTTTACACC+AGG	-	chr1.1:77128190-77128209	None:intergenic	35.0%
!!	CAATTACTGGAAGCTTTGTT+GGG	+	chr1.1:77129092-77129111	MS.gene71681:CDS	35.0%
!!	GTTTGTTGTGAAAATACCAG+AGG	+	chr1.1:77128280-77128299	MS.gene71681:CDS	35.0%
!!!	TTGGAGTTTTGGAAAGAGAA+GGG	+	chr1.1:77129139-77129158	MS.gene71681:CDS	35.0%
	AAAAACAGGCATGAAGTGGT+TGG	+	chr1.1:77127479-77127498	MS.gene71681:intron	40.0%
	AAGAGCTTATCACAGTGACA+TGG	-	chr1.1:77128466-77128485	None:intergenic	40.0%
	ATCATTGACACTGTTCCTGT+TGG	+	chr1.1:77128590-77128609	MS.gene71681:CDS	40.0%
	CCAATTATCCTATGGTTCCT+GGG	+	chr1.1:77127304-77127323	MS.gene71681:CDS	40.0%
	CTATTGATGTTGTGTTGCGT+AGG	+	chr1.1:77129061-77129080	MS.gene71681:intron	40.0%
	CTTGTTAGCTCAGATACTGT+TGG	+	chr1.1:77128536-77128555	MS.gene71681:CDS	40.0%
	GATTGGAGAAGAATGATGTG+AGG	+	chr1.1:77129218-77129237	MS.gene71681:CDS	40.0%
	GTTCAAAGTGGGAGAAATTG+TGG	+	chr1.1:77127535-77127554	MS.gene71681:CDS	40.0%
	TCCAATTATCCTATGGTTCC+TGG	+	chr1.1:77127303-77127322	MS.gene71681:CDS	40.0%
	TGGCATGTCCAATTATCCTA+TGG	+	chr1.1:77127296-77127315	MS.gene71681:CDS	40.0%
	TGTGAAAATACCAGAGGGAT+TGG	+	chr1.1:77128286-77128305	MS.gene71681:CDS	40.0%
	TGTGTATGGAGTGAGAATTC+CGG	-	chr1.1:77127046-77127065	None:intergenic	40.0%
	TGTTTGGGGATATTACTGTC+AGG	+	chr1.1:77128258-77128277	MS.gene71681:intron	40.0%
	TTCAGCCCAAAATGTGAAAG+TGG	-	chr1.1:77128362-77128381	None:intergenic	40.0%
!	AGGTGGGTTCAAATGTTACA+AGG	+	chr1.1:77127513-77127532	MS.gene71681:CDS	40.0%
!	ATTTTGGGCTGAAAACACCT+GGG	+	chr1.1:77128369-77128388	MS.gene71681:CDS	40.0%
!	GTTTTACCTAGCATGACCAT+AGG	-	chr1.1:77128707-77128726	None:intergenic	40.0%
!!	GTGAAAGTAGCAAAGGCATT+AGG	+	chr1.1:77128437-77128456	MS.gene71681:CDS	40.0%
!!	TTACTTTTGTTCAACGACGG+TGG	-	chr1.1:77127699-77127718	None:intergenic	40.0%
!!!	GTTGGAGTTTTGGAAAGAGA+AGG	+	chr1.1:77129138-77129157	MS.gene71681:CDS	40.0%
	AATATTCCACCTCTTAGCCC+AGG	-	chr1.1:77128389-77128408	None:intergenic	45.0%
	ACTATGCAGAAACACAGGAC+CGG	+	chr1.1:77127203-77127222	MS.gene71681:intron	45.0%
	ACTGACGGAAAGATCACTCA+GGG	+	chr1.1:77127659-77127678	MS.gene71681:CDS	45.0%
	AGAGGTGGAATATTGGGTCT+TGG	+	chr1.1:77128395-77128414	MS.gene71681:CDS	45.0%
	AGGTTCGTTGTGGATGTCAA+AGG	+	chr1.1:77129244-77129263	MS.gene71681:CDS	45.0%
	ATATTGGGTCTTGGTGGAGT+AGG	+	chr1.1:77128404-77128423	MS.gene71681:CDS	45.0%
	ATGGAGTGAGAATTCCGGAA+GGG	-	chr1.1:77127041-77127060	None:intergenic	45.0%
	CATACATACCCAGGAACCAT+AGG	-	chr1.1:77127315-77127334	None:intergenic	45.0%
	CCCAGGAACCATAGGATAAT+TGG	-	chr1.1:77127307-77127326	None:intergenic	45.0%
	CGGACATATGCAACAAACAC+CGG	-	chr1.1:77127382-77127401	None:intergenic	45.0%
	CTCCATACACATACACTCTC+AGG	+	chr1.1:77127055-77127074	MS.gene71681:CDS	45.0%
	GCTGCAGAAAGAACAACAGT+AGG	+	chr1.1:77127000-77127019	MS.gene71681:CDS	45.0%
	GGGCTAAGAGGTGGAATATT+GGG	+	chr1.1:77128389-77128408	MS.gene71681:CDS	45.0%
	GTAGGGAGGAAGTCAATTAC+TGG	+	chr1.1:77129079-77129098	MS.gene71681:intron	45.0%
	GTTACACCTATGGTCATGCT+AGG	+	chr1.1:77128698-77128717	MS.gene71681:CDS	45.0%
	TATGGAGTGAGAATTCCGGA+AGG	-	chr1.1:77127042-77127061	None:intergenic	45.0%
	TGGGCTAAGAGGTGGAATAT+TGG	+	chr1.1:77128388-77128407	MS.gene71681:CDS	45.0%
	TGTGAGGTATAGGTTCGTTG+TGG	+	chr1.1:77129234-77129253	MS.gene71681:CDS	45.0%
!	AACAATGGTGCAACTTGCTC+TGG	-	chr1.1:77128314-77128333	None:intergenic	45.0%
!	CACCTGAGAGTGTATGTGTA+TGG	-	chr1.1:77127060-77127079	None:intergenic	45.0%
!	CAGAGGAGATGTTGGAGTTT+TGG	+	chr1.1:77129128-77129147	MS.gene71681:CDS	45.0%
!	CATTTTGGGCTGAAAACACC+TGG	+	chr1.1:77128368-77128387	MS.gene71681:CDS	45.0%
!!	AAAGAGGCACTTGAGGATCT+TGG	+	chr1.1:77128500-77128519	MS.gene71681:CDS	45.0%
!!	GAAGAAGAAAGAGGCACTTG+AGG	+	chr1.1:77128493-77128512	MS.gene71681:CDS	45.0%
!!!	TTAAACTTTTTTTTTTAATT+TGG	+	chr1.1:77128855-77128874	MS.gene71681:intron	5.0%
!!!	TTTTTAAATAATTTATGTTT+AGG	-	chr1.1:77128927-77128946	None:intergenic	5.0%
	AAAACACCTGGGCTAAGAGG+TGG	+	chr1.1:77128380-77128399	MS.gene71681:CDS	50.0%
	CACTGACGGAAAGATCACTC+AGG	+	chr1.1:77127658-77127677	MS.gene71681:CDS	50.0%
	CATGGGGGTGAAAGTAGCAA+AGG	+	chr1.1:77128430-77128449	MS.gene71681:CDS	50.0%
	CTGAAAACACCTGGGCTAAG+AGG	+	chr1.1:77128377-77128396	MS.gene71681:CDS	50.0%
	CTTGGTGGAGTAGGACACAT+GGG	+	chr1.1:77128413-77128432	MS.gene71681:CDS	50.0%
	GAAGGAGACAGAGGAGATGT+TGG	+	chr1.1:77129120-77129139	MS.gene71681:CDS	50.0%
	GGTGGAATATTGGGTCTTGG+TGG	+	chr1.1:77128398-77128417	MS.gene71681:CDS	50.0%
	GTCACACCTGCACACAACAA+TGG	-	chr1.1:77128329-77128348	None:intergenic	50.0%
	GTGGGAGAAATTGTGGGAGT+TGG	+	chr1.1:77127542-77127561	MS.gene71681:CDS	50.0%
	GTTGCACCATTGTTGTGTGC+AGG	+	chr1.1:77128320-77128339	MS.gene71681:CDS	50.0%
	TCTTGGTGGAGTAGGACACA+TGG	+	chr1.1:77128412-77128431	MS.gene71681:CDS	50.0%
	TGATGTTGTGTTGCGTAGGG+AGG	+	chr1.1:77129065-77129084	MS.gene71681:intron	50.0%
	TTGGCTGCAAAAGACCCTTC+CGG	+	chr1.1:77127024-77127043	MS.gene71681:CDS	50.0%
	TTGGTGGAGTAGGACACATG+GGG	+	chr1.1:77128414-77128433	MS.gene71681:CDS	50.0%
!	GTTGGTGAGGTACTAGAGGT+GGG	+	chr1.1:77127497-77127516	MS.gene71681:CDS	50.0%
!!	AAGCTTTGTTGGGAGCGTGA+AGG	+	chr1.1:77129102-77129121	MS.gene71681:CDS	50.0%
!!	AGTGGTTGGTGAGGTACTAG+AGG	+	chr1.1:77127493-77127512	MS.gene71681:CDS	50.0%
	GACGGAAAGATCACTCAGGG+TGG	+	chr1.1:77127662-77127681	MS.gene71681:CDS	55.0%
	TGGTGGAGTAGGACACATGG+GGG	+	chr1.1:77128415-77128434	MS.gene71681:CDS	55.0%
!	CAGGCATGAAGTGGTTGGTG+AGG	+	chr1.1:77127484-77127503	MS.gene71681:intron	55.0%
!!	GGTTGGTGAGGTACTAGAGG+TGG	+	chr1.1:77127496-77127515	MS.gene71681:CDS	55.0%
!!	GTGGGAGTTGGTCTTCTCGT+TGG	+	chr1.1:77127554-77127573	MS.gene71681:CDS	55.0%
	GGCTCAAGAGGGTGACCAAC+AGG	-	chr1.1:77128608-77128627	None:intergenic	60.0%
!	TGCTCTGGTGCCAATCCCTC+TGG	-	chr1.1:77128299-77128318	None:intergenic	60.0%
!	TGGGAGCGTGAAGGAGACAG+AGG	+	chr1.1:77129111-77129130	MS.gene71681:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	77126985	77129285	77126985	ID=MS.gene71681
chr1.1	mRNA	77126985	77129285	77126985	ID=MS.gene71681.t1;Parent=MS.gene71681
chr1.1	exon	77126985	77127076	77126985	ID=MS.gene71681.t1.exon1;Parent=MS.gene71681.t1
chr1.1	CDS	77126985	77127076	77126985	ID=cds.MS.gene71681.t1;Parent=MS.gene71681.t1
chr1.1	exon	77127212	77127325	77127212	ID=MS.gene71681.t1.exon2;Parent=MS.gene71681.t1
chr1.1	CDS	77127212	77127325	77127212	ID=cds.MS.gene71681.t1;Parent=MS.gene71681.t1
chr1.1	exon	77127487	77127714	77127487	ID=MS.gene71681.t1.exon3;Parent=MS.gene71681.t1
chr1.1	CDS	77127487	77127714	77127487	ID=cds.MS.gene71681.t1;Parent=MS.gene71681.t1
chr1.1	exon	77128280	77128719	77128280	ID=MS.gene71681.t1.exon4;Parent=MS.gene71681.t1
chr1.1	CDS	77128280	77128719	77128280	ID=cds.MS.gene71681.t1;Parent=MS.gene71681.t1
chr1.1	exon	77129083	77129285	77129083	ID=MS.gene71681.t1.exon5;Parent=MS.gene71681.t1
chr1.1	CDS	77129083	77129285	77129083	ID=cds.MS.gene71681.t1;Parent=MS.gene71681.t1

Gene Sequence

>MS.gene71681

ATGGGTAGCATTGAAGCTGCAGAAAGAACAACAGTAGGATTGGCTGCAAAAGACCCTTCCGGAATTCTCACTCCATACACATACACTCTCAGGTGATTAGATTAGTGTGTAAATAAACGTCATCTGATTTATTTATTATATACTTATATTTGTTTTGTTTTTTGTGACAATACGTACGTGACGATTAATAATAATATAATATTATTGTTATGCTTAAAACTATGCAGAAACACAGGACCGGATGATGTTTACATCAAAATTCATTACTGTGGAGTCTGTCATTCTGATCTTCACCAAATCAAAAATGATCTTGGCATGTCCAATTATCCTATGGTTCCTGGGTATGTATGTTAACTTCTTAACTTCTTAACTCGTATCTATCAAATTATTATGTCCGGTGTTTGTTGCATATGTCCGTGTTTCGATTAATTTTAAGGTTCTTAATTAGTGTTGTATCTTTTGTTGAGAAAAATTAACGTTTATGATTGTTTTGAAAAAACAGGCATGAAGTGGTTGGTGAGGTACTAGAGGTGGGTTCAAATGTTACAAGGTTCAAAGTGGGAGAAATTGTGGGAGTTGGTCTTCTCGTTGGTTGCTGCAAAAGCTGCAGAGCATGTGATTCTGAGATTGAGCAATACTGCAACAAGAAGATCTGGTCTTACAATGATGTTTACACTGACGGAAAGATCACTCAGGGTGGCTTTGCTGAATCCACCGTCGTTGAACAAAAGTAATAATCATACAATTAAATTAAATTAAATTATTTTCTCATTTTTTATTGTTTTCCGTGTCAAATTAAATTCCACACGTTTTATGCATTTCTGAAAAACCCATTTAAAAAACATTGATGATTTGATGTCTGTTTAGATTATTTTCAGCTTATTTTCAACTTATTGTCAAATCTGTGTATACTTCATATGAAATGAAAATTGTTTGATCTTATTTGACTTTTTCATTATTGATATAACTTATGTTATAAGTTGTTTATACAAACGCTTATGTTATGAAAAATGTTTTATGGACGCCCAATTTTTTTCACACCTGTTAATCACATACAAACTTGTGATTGATTTGATTCAATTGAGTAGATAATTAATTTAGATATGTTCAATTGTGGTTAATTATGTAGTTGAATTGACCATATTTTTTTTACTGTGAACTAAATTAACTGTGTACCCAACTAAATTAATTACTTTTATGAACCTGGTGTAAAAGGTGTTAGAAAAAATAGATGTTTGAATATTATTACTGAGTTTATTTTAAACTGATTATGTGTTTGGGGATATTACTGTCAGGTTTGTTGTGAAAATACCAGAGGGATTGGCACCAGAGCAAGTTGCACCATTGTTGTGTGCAGGTGTGACTGTGTACAGTCCACTTTCACATTTTGGGCTGAAAACACCTGGGCTAAGAGGTGGAATATTGGGTCTTGGTGGAGTAGGACACATGGGGGTGAAAGTAGCAAAGGCATTAGGTCACCATGTCACTGTGATAAGCTCTTCTGATAAGAAGAAGAAAGAGGCACTTGAGGATCTTGGAGCTGACAATTATCTTGTTAGCTCAGATACTGTTGGGATGCAAGAAGCTGCTGATTCACTTGATTATATCATTGACACTGTTCCTGTTGGTCACCCTCTTGAGCCTTATCTTTCATTGCTCAAAATTGATGGGAAATTGATCTTGATGGGTGTTATTAACACCCCTCTTCAATTTGTTACACCTATGGTCATGCTAGGTAAAACCCACCTTCTTCTTTCTCATCAATGATTTTTAGCTTAGTTATTGAATAGGTCCCTTGACTATTGAAGATTTTAAAATTATTCATTGAGCTGAAAAAAATGTAATCATATCCTAAATTTGTTAGTAATTTTTAAACTTTTTTTTTTAATTTGGTCTCTCAACTTTTAAATAACTTGTAATTAGGTCTTGAATTTAGGGACCTAAACATAAATTATTTAAAAATCTAGTTCAAGGATATATTTGAAAATCTCCAAATTGTTCAATAACTTAAAGAGTAATTATTTTTTTTTTTTTTTTTTGCTTTTGATTTTTCCAATTGTAATGATATCTTCTAATCTATTGATGTTGTGTTGCGTAGGGAGGAAGTCAATTACTGGAAGCTTTGTTGGGAGCGTGAAGGAGACAGAGGAGATGTTGGAGTTTTGGAAAGAGAAGGGTCTAACTTCCATGATTGAAATTGTAACTATGGATTACATTAACAAAGCTTTTGAAAGATTGGAGAAGAATGATGTGAGGTATAGGTTCGTTGTGGATGTCAAAGGAAGTAAATTTGAGGAGTGA

Protein sequence

>MS.gene71681.t1

MGSIEAAERTTVGLAAKDPSGILTPYTYTLRNTGPDDVYIKIHYCGVCHSDLHQIKNDLGMSNYPMVPGHEVVGEVLEVGSNVTRFKVGEIVGVGLLVGCCKSCRACDSEIEQYCNKKIWSYNDVYTDGKITQGGFAESTVVEQKFVVKIPEGLAPEQVAPLLCAGVTVYSPLSHFGLKTPGLRGGILGLGGVGHMGVKVAKALGHHVTVISSSDKKKKEALEDLGADNYLVSSDTVGMQEAADSLDYIIDTVPVGHPLEPYLSLLKIDGKLILMGVINTPLQFVTPMVMLGRKSITGSFVGSVKETEEMLEFWKEKGLTSMIEIVTMDYINKAFERLEKNDVRYRFVVDVKGSKFEE