Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027820.t1 | PNX92642.1 | 79.4 | 360 | 61 | 1 | 1 | 347 | 1 | 360 | 6.40E-168 | 600.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027820.t1 | Q9ZRF1 | 76.8 | 353 | 69 | 1 | 6 | 345 | 4 | 356 | 6.1e-159 | 561.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027820.t1 | A0A2K3MPD7 | 79.4 | 360 | 61 | 1 | 1 | 347 | 1 | 360 | 4.6e-168 | 600.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027820.t1 | MTR_5g031390 | 76.944 | 360 | 70 | 1 | 1 | 347 | 1 | 360 | 0.0 | 555 |
| MS.gene027820.t1 | MTR_5g031230 | 75.833 | 360 | 74 | 1 | 1 | 347 | 1 | 360 | 0.0 | 547 |
| MS.gene027820.t1 | MTR_5g031250 | 75.556 | 360 | 75 | 1 | 1 | 347 | 1 | 360 | 0.0 | 543 |
| MS.gene027820.t1 | MTR_4g115300 | 74.722 | 360 | 78 | 1 | 1 | 347 | 1 | 360 | 0.0 | 537 |
| MS.gene027820.t1 | MTR_5g031300 | 75.354 | 353 | 74 | 1 | 8 | 347 | 9 | 361 | 0.0 | 536 |
| MS.gene027820.t1 | MTR_5g031305 | 75.706 | 354 | 73 | 1 | 8 | 348 | 9 | 362 | 0.0 | 534 |
| MS.gene027820.t1 | MTR_5g031190 | 72.500 | 360 | 86 | 1 | 1 | 347 | 1 | 360 | 0.0 | 533 |
| MS.gene027820.t1 | MTR_5g031310 | 75.211 | 355 | 75 | 1 | 7 | 348 | 8 | 362 | 0.0 | 530 |
| MS.gene027820.t1 | MTR_5g031180 | 76.944 | 360 | 70 | 1 | 1 | 347 | 1 | 360 | 0.0 | 523 |
| MS.gene027820.t1 | MTR_8g068190 | 75.278 | 360 | 76 | 1 | 1 | 347 | 1 | 360 | 0.0 | 521 |
| MS.gene027820.t1 | MTR_5g031210 | 73.611 | 360 | 82 | 1 | 1 | 347 | 1 | 360 | 0.0 | 520 |
| MS.gene027820.t1 | MTR_5g031360 | 72.727 | 352 | 83 | 1 | 10 | 348 | 12 | 363 | 0.0 | 511 |
| MS.gene027820.t1 | MTR_8g092630 | 60.674 | 356 | 123 | 2 | 8 | 346 | 60 | 415 | 1.23e-144 | 415 |
| MS.gene027820.t1 | MTR_5g031430 | 60.870 | 345 | 122 | 1 | 14 | 345 | 14 | 358 | 3.01e-140 | 402 |
| MS.gene027820.t1 | MTR_1g025950 | 57.020 | 349 | 136 | 2 | 8 | 342 | 7 | 355 | 4.32e-132 | 381 |
| MS.gene027820.t1 | MTR_5g031250 | 73.859 | 241 | 50 | 1 | 1 | 228 | 1 | 241 | 5.04e-121 | 349 |
| MS.gene027820.t1 | MTR_1g107425 | 51.020 | 343 | 155 | 1 | 11 | 340 | 9 | 351 | 7.75e-115 | 337 |
| MS.gene027820.t1 | MTR_2g009810 | 52.890 | 346 | 148 | 3 | 14 | 345 | 62 | 406 | 7.76e-113 | 334 |
| MS.gene027820.t1 | MTR_1g107425 | 51.042 | 288 | 128 | 1 | 11 | 285 | 9 | 296 | 1.19e-90 | 274 |
| MS.gene027820.t1 | MTR_5g031290 | 98.261 | 115 | 2 | 0 | 234 | 348 | 80 | 194 | 4.93e-74 | 227 |
| MS.gene027820.t1 | MTR_5g031290 | 95.000 | 80 | 3 | 1 | 1 | 79 | 1 | 80 | 5.27e-49 | 163 |
| MS.gene027820.t1 | MTR_2g009820 | 47.471 | 257 | 119 | 5 | 96 | 345 | 7 | 254 | 2.39e-59 | 192 |
| MS.gene027820.t1 | MTR_8g095220 | 26.936 | 297 | 172 | 10 | 10 | 265 | 51 | 343 | 1.59e-19 | 89.4 |
| MS.gene027820.t1 | MTR_8g095220 | 27.734 | 256 | 145 | 7 | 10 | 229 | 51 | 302 | 9.36e-19 | 85.9 |
| MS.gene027820.t1 | MTR_3g089977 | 23.797 | 374 | 236 | 11 | 11 | 341 | 12 | 379 | 6.22e-18 | 84.3 |
| MS.gene027820.t1 | MTR_3g089940 | 24.176 | 364 | 228 | 10 | 11 | 331 | 12 | 370 | 7.59e-18 | 84.0 |
| MS.gene027820.t1 | MTR_3g089940 | 23.901 | 364 | 229 | 10 | 11 | 331 | 12 | 370 | 1.23e-17 | 83.6 |
| MS.gene027820.t1 | MTR_3g089940 | 24.398 | 332 | 211 | 8 | 11 | 306 | 12 | 339 | 4.53e-16 | 78.6 |
| MS.gene027820.t1 | MTR_3g089970 | 23.757 | 362 | 228 | 10 | 13 | 331 | 15 | 371 | 4.84e-16 | 79.0 |
| MS.gene027820.t1 | MTR_3g089940 | 24.096 | 332 | 212 | 8 | 11 | 306 | 12 | 339 | 7.19e-16 | 78.2 |
| MS.gene027820.t1 | MTR_1g069430 | 24.036 | 337 | 212 | 9 | 1 | 299 | 1 | 331 | 5.70e-12 | 66.6 |
| MS.gene027820.t1 | MTR_7g068320 | 26.149 | 348 | 186 | 14 | 39 | 328 | 48 | 382 | 1.46e-11 | 65.5 |
| MS.gene027820.t1 | MTR_6g466320 | 24.265 | 272 | 182 | 8 | 25 | 277 | 29 | 295 | 1.99e-11 | 65.1 |
| MS.gene027820.t1 | MTR_6g465010 | 24.265 | 272 | 182 | 8 | 25 | 277 | 29 | 295 | 1.99e-11 | 65.1 |
| MS.gene027820.t1 | MTR_6g465010 | 24.265 | 272 | 182 | 8 | 25 | 277 | 13 | 279 | 2.34e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027820.t1 | AT4G37980 | 68.091 | 351 | 99 | 2 | 11 | 348 | 7 | 357 | 2.30e-162 | 458 |
| MS.gene027820.t1 | AT4G37990 | 68.946 | 351 | 96 | 1 | 11 | 348 | 7 | 357 | 1.30e-160 | 454 |
| MS.gene027820.t1 | AT4G39330 | 62.745 | 357 | 120 | 1 | 1 | 344 | 1 | 357 | 2.11e-159 | 451 |
| MS.gene027820.t1 | AT4G37970 | 60.845 | 355 | 126 | 1 | 6 | 347 | 7 | 361 | 3.91e-155 | 440 |
| MS.gene027820.t1 | AT2G21730 | 59.483 | 348 | 126 | 2 | 12 | 344 | 6 | 353 | 4.64e-147 | 420 |
| MS.gene027820.t1 | AT2G21890 | 59.366 | 347 | 127 | 2 | 12 | 344 | 6 | 352 | 1.44e-146 | 419 |
| MS.gene027820.t1 | AT4G39330 | 61.462 | 301 | 103 | 1 | 1 | 288 | 1 | 301 | 1.48e-126 | 365 |
| MS.gene027820.t1 | AT4G37980 | 67.247 | 287 | 81 | 2 | 11 | 284 | 7 | 293 | 8.06e-124 | 358 |
| MS.gene027820.t1 | AT4G37970 | 59.170 | 289 | 105 | 1 | 6 | 281 | 7 | 295 | 2.57e-116 | 339 |
| MS.gene027820.t1 | AT1G72680 | 51.020 | 343 | 154 | 2 | 16 | 345 | 14 | 355 | 1.26e-111 | 329 |
| MS.gene027820.t1 | AT3G19450 | 50.289 | 346 | 159 | 1 | 11 | 343 | 9 | 354 | 5.37e-105 | 313 |
| MS.gene027820.t1 | AT4G34230 | 50.289 | 346 | 159 | 1 | 8 | 340 | 5 | 350 | 1.70e-96 | 291 |
| MS.gene027820.t1 | AT4G34230 | 50.000 | 346 | 160 | 1 | 8 | 340 | 5 | 350 | 1.43e-95 | 288 |
| MS.gene027820.t1 | AT4G37970 | 57.500 | 240 | 89 | 1 | 6 | 232 | 7 | 246 | 9.84e-91 | 272 |
| MS.gene027820.t1 | AT4G37970 | 57.806 | 237 | 87 | 1 | 6 | 229 | 7 | 243 | 8.76e-90 | 270 |
| MS.gene027820.t1 | AT5G63620 | 24.828 | 290 | 177 | 7 | 15 | 265 | 58 | 345 | 2.34e-18 | 85.9 |
| MS.gene027820.t1 | AT5G63620 | 24.828 | 290 | 177 | 7 | 15 | 265 | 58 | 345 | 3.05e-18 | 85.9 |
| MS.gene027820.t1 | AT5G63620 | 25.703 | 249 | 149 | 5 | 15 | 229 | 58 | 304 | 2.17e-17 | 82.0 |
| MS.gene027820.t1 | AT1G77120 | 22.977 | 383 | 248 | 12 | 1 | 341 | 1 | 378 | 2.17e-15 | 77.0 |
| MS.gene027820.t1 | AT5G43940 | 24.629 | 337 | 210 | 9 | 1 | 299 | 1 | 331 | 8.95e-15 | 75.1 |
| MS.gene027820.t1 | AT5G43940 | 24.749 | 299 | 184 | 7 | 39 | 299 | 48 | 343 | 1.08e-14 | 75.1 |
| MS.gene027820.t1 | AT5G51970 | 25.287 | 261 | 173 | 7 | 36 | 277 | 40 | 297 | 2.65e-12 | 67.8 |
| MS.gene027820.t1 | AT5G51970 | 25.287 | 261 | 173 | 7 | 36 | 277 | 40 | 297 | 2.65e-12 | 67.8 |
Find 104 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAGCCCTCTTATATATTA+TGG | 0.179321 | 5.2:+21621620 | MS.gene027820:CDS |
| GTAAAATTTGCCAAAGCTTT+TGG | 0.190975 | 5.2:+21621704 | MS.gene027820:CDS |
| GCCCAACCAAAGGCCTTCTT+TGG | 0.253742 | 5.2:-21619146 | None:intergenic |
| TTCTTTGGATGCTCGTATTC+AGG | 0.264086 | 5.2:-21619131 | None:intergenic |
| CTTGGGTGGGTTGGGCCATA+TGG | 0.281149 | 5.2:+21621679 | MS.gene027820:CDS |
| GTAAATCAATTAGGGGTAAG+AGG | 0.298660 | 5.2:-21622048 | None:intergenic |
| GGTAACTCAAGAGGCTTCTC+TGG | 0.324759 | 5.2:-21622106 | None:intergenic |
| GTGGTTGGCTTGGGTGGGTT+GGG | 0.339828 | 5.2:+21621671 | MS.gene027820:CDS |
| TCATGTGGGCGTGGTTGGCT+TGG | 0.340992 | 5.2:+21621661 | MS.gene027820:CDS |
| TTTACTTCTTATAGGGAAAC+AGG | 0.345430 | 5.2:+21620044 | MS.gene027820:intron |
| GGATGTGCCCCATCCGTTCT+TGG | 0.349233 | 5.2:-21620129 | None:intergenic |
| AGAGAAGCCTCTTGAGTTAC+CGG | 0.354673 | 5.2:+21622108 | MS.gene027820:CDS |
| CAAGACTGTCATCACAATCT+TGG | 0.357268 | 5.2:-21621424 | None:intergenic |
| AAACTTTACCCTGGAACTAA+TGG | 0.359391 | 5.2:-21620158 | None:intergenic |
| CATGTGGGCGTGGTTGGCTT+GGG | 0.365484 | 5.2:+21621662 | MS.gene027820:CDS |
| CGTGGTTGGCTTGGGTGGGT+TGG | 0.369888 | 5.2:+21621670 | MS.gene027820:CDS |
| ATAGGTATAACTTCAATATC+AGG | 0.375109 | 5.2:-21622387 | None:intergenic |
| CACATTAACTCCAAAAGCTT+TGG | 0.387902 | 5.2:-21621714 | None:intergenic |
| TTAGAAATGAATCAGCTTTG+AGG | 0.399461 | 5.2:-21621784 | None:intergenic |
| GCATCAAGTGGTAAGGCATT+AGG | 0.409198 | 5.2:-21621563 | None:intergenic |
| CCCCTTTCAATTTCTCCAGA+AGG | 0.415467 | 5.2:+21619195 | MS.gene027820:CDS |
| CTAGGCTGCAACGGGGACTT+TGG | 0.420020 | 5.2:+21621991 | MS.gene027820:intron |
| GATATTTAACATCTGATTTG+AGG | 0.424894 | 5.2:-21622440 | None:intergenic |
| GGTCTTCATGTGGGCGTGGT+TGG | 0.426930 | 5.2:+21621656 | MS.gene027820:CDS |
| TCCAAAGAAGGCCTTTGGTT+GGG | 0.430490 | 5.2:+21619145 | MS.gene027820:CDS |
| GTGGGCGTGGTTGGCTTGGG+TGG | 0.430638 | 5.2:+21621665 | MS.gene027820:CDS |
| TAGTGGAATGGGAGGGATGA+AGG | 0.430679 | 5.2:+21622320 | MS.gene027820:CDS |
| ATCTCATGGAAAGCTTGTAT+TGG | 0.439344 | 5.2:+21622075 | MS.gene027820:CDS |
| TCCACCTACCCATTAGTTCC+AGG | 0.440028 | 5.2:+21620149 | MS.gene027820:CDS |
| TTGAGTCCATAATATATAAG+AGG | 0.440641 | 5.2:-21621626 | None:intergenic |
| AGGGCTATAAACAGTGATTC+CGG | 0.443059 | 5.2:-21621606 | None:intergenic |
| TGATTTACCTGCATTTGATC+CGG | 0.443468 | 5.2:-21621818 | None:intergenic |
| ATGGTAGCTGGTAGTGGAAT+GGG | 0.444794 | 5.2:+21622309 | MS.gene027820:CDS |
| AACTTTACCCTGGAACTAAT+GGG | 0.454985 | 5.2:-21620157 | None:intergenic |
| GAGCATCCAAAGAAGGCCTT+TGG | 0.455342 | 5.2:+21619140 | MS.gene027820:CDS |
| ACAAAATTTATACTGACATA+TGG | 0.456413 | 5.2:+21621458 | MS.gene027820:CDS |
| ATTTCTAATTAGCCGTGATC+CGG | 0.457200 | 5.2:+21621799 | MS.gene027820:CDS |
| TGGGCAGCTAGAGATCCTTC+TGG | 0.459135 | 5.2:+21619164 | MS.gene027820:CDS |
| TATCGATTTGTGATTGACAT+TGG | 0.459329 | 5.2:+21622459 | MS.gene027820:CDS |
| TGATATTGAAGTTATACCTA+TGG | 0.461411 | 5.2:+21622389 | MS.gene027820:CDS |
| TGGGCGTGGTTGGCTTGGGT+GGG | 0.463250 | 5.2:+21621666 | MS.gene027820:CDS |
| GTGGTAAGGCATTAGGTATA+CGG | 0.469075 | 5.2:-21621556 | None:intergenic |
| GTGGGTGTGGGATGCTTAGT+TGG | 0.470176 | 5.2:+21621386 | MS.gene027820:CDS |
| ATTGATTTACTAAAATCTCA+TGG | 0.489141 | 5.2:+21622061 | MS.gene027820:CDS |
| CATTCAAAGTGTTGTACTGC+GGG | 0.490748 | 5.2:+21620081 | MS.gene027820:CDS |
| AATTACAGGCACGAAATTGT+TGG | 0.492254 | 5.2:+21621311 | MS.gene027820:intron |
| TCCACATGGCCAAGAACGGA+TGG | 0.501341 | 5.2:+21620120 | MS.gene027820:CDS |
| ATATGCTTACCCACTAGTAA+AGG | 0.502268 | 5.2:-21622136 | None:intergenic |
| TAAATCAATTAGGGGTAAGA+GGG | 0.509447 | 5.2:-21622047 | None:intergenic |
| AATGGTAGCTGGTAGTGGAA+TGG | 0.509954 | 5.2:+21622308 | MS.gene027820:CDS |
| GTTGCTCCTCTCCTTTGCGC+CGG | 0.514121 | 5.2:+21621587 | MS.gene027820:CDS |
| AACCTTCTGGAGAAATTGAA+AGG | 0.514629 | 5.2:-21619197 | None:intergenic |
| GTAACTCAAGAGGCTTCTCT+GGG | 0.523989 | 5.2:-21622105 | None:intergenic |
| ACCTTCTGGAGAAATTGAAA+GGG | 0.532153 | 5.2:-21619196 | None:intergenic |
| ATCCAAAGAAGGCCTTTGGT+TGG | 0.536152 | 5.2:+21619144 | MS.gene027820:CDS |
| CACATGGCCAAGAACGGATG+GGG | 0.541448 | 5.2:+21620122 | MS.gene027820:CDS |
| CCCACTAGTAAAGGCCATGC+CGG | 0.544245 | 5.2:-21622127 | None:intergenic |
| CCTGCATTTGATCCGGATCA+CGG | 0.544959 | 5.2:-21621811 | None:intergenic |
| GCTGCAACGGGGACTTTGGA+TGG | 0.547247 | 5.2:+21621995 | MS.gene027820:CDS |
| TGAATACGAGCATCCAAAGA+AGG | 0.550894 | 5.2:+21619133 | MS.gene027820:CDS |
| ACCGGCATGGCCTTTACTAG+TGG | 0.552437 | 5.2:+21622126 | MS.gene027820:CDS |
| CCGTGATCCGGATCAAATGC+AGG | 0.557363 | 5.2:+21621811 | MS.gene027820:CDS |
| CAACAAGCCTGGTCTTCATG+TGG | 0.557723 | 5.2:+21621646 | MS.gene027820:CDS |
| GGCGCAAAGGAGAGGAGCAA+CGG | 0.560469 | 5.2:-21621585 | None:intergenic |
| CATGGAAAGCTTGTATTGGT+TGG | 0.560486 | 5.2:+21622079 | MS.gene027820:CDS |
| TTTCAAAGTTGATGACAAAG+TGG | 0.561295 | 5.2:+21621367 | MS.gene027820:CDS |
| TATTATGGACTCAACAAGCC+TGG | 0.561737 | 5.2:+21621635 | MS.gene027820:CDS |
| CCACATGGCCAAGAACGGAT+GGG | 0.561885 | 5.2:+21620121 | MS.gene027820:CDS |
| GCCTGGTCTTCATGTGGGCG+TGG | 0.564812 | 5.2:+21621652 | MS.gene027820:CDS |
| TTCAAAGTTGATGACAAAGT+GGG | 0.565826 | 5.2:+21621368 | MS.gene027820:CDS |
| AGCAACGGCATCAAGTGGTA+AGG | 0.566534 | 5.2:-21621570 | None:intergenic |
| ATCCGTTCTTGGCCATGTGG+AGG | 0.568436 | 5.2:-21620118 | None:intergenic |
| AGTTGATGACAAAGTGGGTG+TGG | 0.569131 | 5.2:+21621373 | MS.gene027820:CDS |
| CCGGCATGGCCTTTACTAGT+GGG | 0.570249 | 5.2:+21622127 | MS.gene027820:CDS |
| ACCACGCCCACATGAAGACC+AGG | 0.576005 | 5.2:-21621653 | None:intergenic |
| ATCTCTAGCTGCCCAACCAA+AGG | 0.576625 | 5.2:-21619156 | None:intergenic |
| AAACAGTGATTCCGGCGCAA+AGG | 0.583315 | 5.2:-21621598 | None:intergenic |
| CCCTGGAACTAATGGGTAGG+TGG | 0.584630 | 5.2:-21620150 | None:intergenic |
| TATGGTGCTAAATATAGTGA+TGG | 0.589474 | 5.2:+21621476 | MS.gene027820:CDS |
| GACCTCCACATGGCCAAGAA+CGG | 0.590217 | 5.2:+21620116 | MS.gene027820:CDS |
| AACAAGCCTGGTCTTCATGT+GGG | 0.590776 | 5.2:+21621647 | MS.gene027820:CDS |
| GTGATTCCGGCGCAAAGGAG+AGG | 0.596204 | 5.2:-21621593 | None:intergenic |
| TGAGTCCATAATATATAAGA+GGG | 0.600060 | 5.2:-21621625 | None:intergenic |
| GTAGCTGGTAGTGGAATGGG+AGG | 0.609728 | 5.2:+21622312 | MS.gene027820:CDS |
| GCTGTATTGACATAATCCAT+AGG | 0.609776 | 5.2:-21622405 | None:intergenic |
| GGCCATGCCGGTAACTCAAG+AGG | 0.610420 | 5.2:-21622115 | None:intergenic |
| CCCATCCGTTCTTGGCCATG+TGG | 0.610999 | 5.2:-21620121 | None:intergenic |
| GGATTATGTCAATACAGCAA+TGG | 0.623261 | 5.2:+21622410 | MS.gene027820:CDS |
| GTTGGTGTAGTGACTGAGGT+GGG | 0.627215 | 5.2:+21621329 | MS.gene027820:CDS |
| CCACCTACCCATTAGTTCCA+GGG | 0.631579 | 5.2:+21620150 | MS.gene027820:CDS |
| AAAGGGGAGAGAACACCAGA+AGG | 0.635132 | 5.2:-21619179 | None:intergenic |
| GTTGATGACAAAGTGGGTGT+GGG | 0.640763 | 5.2:+21621374 | MS.gene027820:CDS |
| AGAGGAGCAACGGCATCAAG+TGG | 0.648951 | 5.2:-21621575 | None:intergenic |
| ATGCCACACGGACCTCCACA+TGG | 0.649847 | 5.2:+21620106 | MS.gene027820:CDS |
| CCTTCTGGAGAAATTGAAAG+GGG | 0.653235 | 5.2:-21619195 | None:intergenic |
| TGTTGGTGTAGTGACTGAGG+TGG | 0.664351 | 5.2:+21621328 | MS.gene027820:CDS |
| TTACCCTGGAACTAATGGGT+AGG | 0.664593 | 5.2:-21620153 | None:intergenic |
| AGCCTCTTGAGTTACCGGCA+TGG | 0.673664 | 5.2:+21622113 | MS.gene027820:CDS |
| GTACTGCGGGATATGCCACA+CGG | 0.688920 | 5.2:+21620094 | MS.gene027820:CDS |
| GCATTCAAAGTGTTGTACTG+CGG | 0.697031 | 5.2:+21620080 | MS.gene027820:CDS |
| TAGCTGGTAGTGGAATGGGA+GGG | 0.704913 | 5.2:+21622313 | MS.gene027820:CDS |
| TGGCCATGTGGAGGTCCGTG+TGG | 0.712135 | 5.2:-21620109 | None:intergenic |
| AATTGTTGGTGTAGTGACTG+AGG | 0.753175 | 5.2:+21621325 | MS.gene027820:CDS |
| TAACTCAAGAGGCTTCTCTG+GGG | 0.760143 | 5.2:-21622104 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAGATGT+TGG | - | chr5.2:21621094-21621113 | None:intergenic | 10.0% |
| !! | AAGATAAAATAATTTATGTT+TGG | - | chr5.2:21620583-21620602 | None:intergenic | 10.0% |
| !! | TACTAGTTAAATATTTATTA+TGG | - | chr5.2:21619656-21619675 | None:intergenic | 10.0% |
| !! | TATTAAATTTACTTCTTATA+GGG | + | chr5.2:21620037-21620056 | MS.gene027820:intron | 10.0% |
| !! | TTATTAAATTTACTTCTTAT+AGG | + | chr5.2:21620036-21620055 | MS.gene027820:intron | 10.0% |
| !!! | ATCTTTTTTTTTTTTTTTGA+GGG | + | chr5.2:21621096-21621115 | MS.gene027820:intron | 10.0% |
| !!! | TATATTTTTTTTTTTCAACT+CGG | + | chr5.2:21621861-21621880 | MS.gene027820:intron | 10.0% |
| !! | AATAAATGTATAAAATGAAG+AGG | - | chr5.2:21619230-21619249 | None:intergenic | 15.0% |
| !! | AATAATCATCATGATTATAA+GGG | - | chr5.2:21619987-21620006 | None:intergenic | 15.0% |
| !! | TAATAATCATCATGATTATA+AGG | - | chr5.2:21619988-21620007 | None:intergenic | 15.0% |
| !! | TCAAAAAAAAAAAAAAATCC+AGG | + | chr5.2:21619528-21619547 | MS.gene027820:intron | 15.0% |
| !!! | AATTATCATTAATTTTTCGA+TGG | + | chr5.2:21619737-21619756 | MS.gene027820:intron | 15.0% |
| !!! | AGATTTTAGTAAATCAATTA+GGG | - | chr5.2:21622059-21622078 | None:intergenic | 15.0% |
| !!! | ATAAATGTTGATAATTTTCT+AGG | + | chr5.2:21621973-21621992 | MS.gene027820:intron | 15.0% |
| !!! | ATAGTAATGTTTAACTTATT+TGG | - | chr5.2:21620920-21620939 | None:intergenic | 15.0% |
| !!! | CATCTTTTTTTTTTTTTTTG+AGG | + | chr5.2:21621095-21621114 | MS.gene027820:intron | 15.0% |
| !!! | GGATTTTTTAAAAAAAATGT+TGG | - | chr5.2:21621073-21621092 | None:intergenic | 15.0% |
| !!! | TAATATTTTGATGTATTGTA+GGG | + | chr5.2:21622280-21622299 | MS.gene027820:intron | 15.0% |
| !!! | TTAATATTTTGATGTATTGT+AGG | + | chr5.2:21622279-21622298 | MS.gene027820:intron | 15.0% |
| !! | AAAAAAAATATACATAGACC+TGG | - | chr5.2:21621853-21621872 | None:intergenic | 20.0% |
| !! | AAATCATTTAATCTCTGTTA+AGG | + | chr5.2:21619771-21619790 | MS.gene027820:intron | 20.0% |
| !! | AATAGGAACAAAAAATTTCT+AGG | + | chr5.2:21619495-21619514 | MS.gene027820:intron | 20.0% |
| !! | ACAAAATTTATACTGACATA+TGG | + | chr5.2:21621458-21621477 | MS.gene027820:CDS | 20.0% |
| !! | ACATTACTATGTACTTTATT+AGG | + | chr5.2:21620930-21620949 | MS.gene027820:intron | 20.0% |
| !! | AGAACATATCTTAGTTATAT+AGG | + | chr5.2:21622176-21622195 | MS.gene027820:intron | 20.0% |
| !! | ATTATTAACAAGGGATAATT+TGG | - | chr5.2:21620675-21620694 | None:intergenic | 20.0% |
| !! | ATTCAAATATCAGATAAAGA+GGG | - | chr5.2:21620382-21620401 | None:intergenic | 20.0% |
| !! | CACTTTAGATCTAAATAATT+AGG | - | chr5.2:21619931-21619950 | None:intergenic | 20.0% |
| !! | TGATAGCTAAAAATGAAAAA+GGG | + | chr5.2:21619555-21619574 | MS.gene027820:intron | 20.0% |
| !! | TTTAGATCTAAATAATTAGG+TGG | - | chr5.2:21619928-21619947 | None:intergenic | 20.0% |
| !!! | AAGGAAAAATTTTATCACAA+AGG | - | chr5.2:21619958-21619977 | None:intergenic | 20.0% |
| !!! | AATGAATTTGTTTTGGTAAT+CGG | - | chr5.2:21621268-21621287 | None:intergenic | 20.0% |
| !!! | ACAAGTTTTTTTTTTTGTCA+AGG | - | chr5.2:21620336-21620355 | None:intergenic | 20.0% |
| !!! | AGTACTATTACATTTTTGTT+TGG | + | chr5.2:21619672-21619691 | MS.gene027820:intron | 20.0% |
| !!! | ATTGATTTACTAAAATCTCA+TGG | + | chr5.2:21622061-21622080 | MS.gene027820:CDS | 20.0% |
| !!! | ATTTGAAGTAACAATTGAAT+AGG | + | chr5.2:21619478-21619497 | MS.gene027820:intron | 20.0% |
| !!! | GAGATTTTAGTAAATCAATT+AGG | - | chr5.2:21622060-21622079 | None:intergenic | 20.0% |
| !!! | GATTTTAGTAAATCAATTAG+GGG | - | chr5.2:21622058-21622077 | None:intergenic | 20.0% |
| !!! | TTCTTCAATTTTCTCAAATA+AGG | - | chr5.2:21620499-21620518 | None:intergenic | 20.0% |
| !!! | TTGTGATAAAATTTTTCCTT+GGG | + | chr5.2:21619958-21619977 | MS.gene027820:intron | 20.0% |
| !!! | TTTGTGATAAAATTTTTCCT+TGG | + | chr5.2:21619957-21619976 | MS.gene027820:intron | 20.0% |
| ! | AACTCTACTTACATAAGTAA+CGG | + | chr5.2:21620233-21620252 | MS.gene027820:intron | 25.0% |
| ! | ACATTTATCTATTAGAAAGG+AGG | - | chr5.2:21620558-21620577 | None:intergenic | 25.0% |
| ! | AGACCTAACAATTATTAACA+AGG | - | chr5.2:21620685-21620704 | None:intergenic | 25.0% |
| ! | ATAGGTATAACTTCAATATC+AGG | - | chr5.2:21622390-21622409 | None:intergenic | 25.0% |
| ! | ATCCCTTGTTAATAATTGTT+AGG | + | chr5.2:21620679-21620698 | MS.gene027820:intron | 25.0% |
| ! | ATTTATCTATTAGAAAGGAG+GGG | - | chr5.2:21620556-21620575 | None:intergenic | 25.0% |
| ! | CATTCAAATATCAGATAAAG+AGG | - | chr5.2:21620383-21620402 | None:intergenic | 25.0% |
| ! | CATTTATCTATTAGAAAGGA+GGG | - | chr5.2:21620557-21620576 | None:intergenic | 25.0% |
| ! | CTCAAATATCTATTTGAACT+TGG | - | chr5.2:21620444-21620463 | None:intergenic | 25.0% |
| ! | GAATATATCAGTCATACATA+TGG | + | chr5.2:21620255-21620274 | MS.gene027820:intron | 25.0% |
| ! | GACACATTTATCTATTAGAA+AGG | - | chr5.2:21620561-21620580 | None:intergenic | 25.0% |
| ! | GACCTAACAATTATTAACAA+GGG | - | chr5.2:21620684-21620703 | None:intergenic | 25.0% |
| ! | GTCAAAAAGTTGTAATAAAG+TGG | - | chr5.2:21620805-21620824 | None:intergenic | 25.0% |
| ! | GTGATAGCTAAAAATGAAAA+AGG | + | chr5.2:21619554-21619573 | MS.gene027820:intron | 25.0% |
| ! | TATAGCCCTCTTATATATTA+TGG | + | chr5.2:21621620-21621639 | MS.gene027820:CDS | 25.0% |
| ! | TCAAACTAAATCATTTGAGA+CGG | + | chr5.2:21621213-21621232 | MS.gene027820:intron | 25.0% |
| ! | TGAGTCCATAATATATAAGA+GGG | - | chr5.2:21621628-21621647 | None:intergenic | 25.0% |
| ! | TGATATTGAAGTTATACCTA+TGG | + | chr5.2:21622389-21622408 | MS.gene027820:CDS | 25.0% |
| ! | TGTCTATGTTAGTATTTCAT+AGG | + | chr5.2:21621937-21621956 | MS.gene027820:intron | 25.0% |
| ! | TTCATTTCCATTCTAACAAT+CGG | + | chr5.2:21621282-21621301 | MS.gene027820:intron | 25.0% |
| ! | TTGAGTCCATAATATATAAG+AGG | - | chr5.2:21621629-21621648 | None:intergenic | 25.0% |
| !! | AAGTAGAGTTTTCTTAAACA+TGG | - | chr5.2:21620223-21620242 | None:intergenic | 25.0% |
| !! | ACTTATTCCTCAAAATGTTT+TGG | - | chr5.2:21619604-21619623 | None:intergenic | 25.0% |
| !! | GATATTTAACATCTGATTTG+AGG | - | chr5.2:21622443-21622462 | None:intergenic | 25.0% |
| !! | TATTTTCTAACCGTGATTTA+GGG | + | chr5.2:21620739-21620758 | MS.gene027820:intron | 25.0% |
| !! | TCAAATAAGGTACCAAAATA+GGG | - | chr5.2:21620486-21620505 | None:intergenic | 25.0% |
| !! | TGTTAAGGCTAACAATTTTT+GGG | + | chr5.2:21619786-21619805 | MS.gene027820:intron | 25.0% |
| !! | TTTGAGAAATCATCAAGTTT+TGG | + | chr5.2:21620458-21620477 | MS.gene027820:intron | 25.0% |
| !!! | GAATGGAAATGAATTTGTTT+TGG | - | chr5.2:21621275-21621294 | None:intergenic | 25.0% |
| ACAATCGGTATAAGAATTAC+AGG | + | chr5.2:21621297-21621316 | MS.gene027820:intron | 30.0% | |
| AGATATGCAAACATTAGAGA+TGG | + | chr5.2:21619305-21619324 | MS.gene027820:intron | 30.0% | |
| ATAAAGTAGAAACTTTACCC+TGG | - | chr5.2:21620170-21620189 | None:intergenic | 30.0% | |
| ATGTATTGTAGGGAGAAAAA+TGG | + | chr5.2:21622290-21622309 | MS.gene027820:intron | 30.0% | |
| CGGTATCTGGTAAATAATTT+GGG | + | chr5.2:21621881-21621900 | MS.gene027820:intron | 30.0% | |
| GGTAAATCACATATATATCC+AGG | + | chr5.2:21621832-21621851 | MS.gene027820:intron | 30.0% | |
| GGTATCTGGTAAATAATTTG+GGG | + | chr5.2:21621882-21621901 | MS.gene027820:intron | 30.0% | |
| GTATCTGGTAAATAATTTGG+GGG | + | chr5.2:21621883-21621902 | MS.gene027820:intron | 30.0% | |
| TAAATCAATTAGGGGTAAGA+GGG | - | chr5.2:21622050-21622069 | None:intergenic | 30.0% | |
| TACATCACCAAACAAAAAGA+AGG | + | chr5.2:21621748-21621767 | MS.gene027820:CDS | 30.0% | |
| TATCATTAGTCCCTAAATCA+CGG | - | chr5.2:21620752-21620771 | None:intergenic | 30.0% | |
| TCGGTATCTGGTAAATAATT+TGG | + | chr5.2:21621880-21621899 | MS.gene027820:intron | 30.0% | |
| TTAGAAATGAATCAGCTTTG+AGG | - | chr5.2:21621787-21621806 | None:intergenic | 30.0% | |
| TTTACTTCTTATAGGGAAAC+AGG | + | chr5.2:21620044-21620063 | MS.gene027820:intron | 30.0% | |
| ! | ATTGCTTCCTTCTTTTTGTT+TGG | - | chr5.2:21621758-21621777 | None:intergenic | 30.0% |
| ! | CAAATAAGGTACCAAAATAG+GGG | - | chr5.2:21620485-21620504 | None:intergenic | 30.0% |
| ! | CTATTTTCTAACCGTGATTT+AGG | + | chr5.2:21620738-21620757 | MS.gene027820:intron | 30.0% |
| ! | CTCAAATAAGGTACCAAAAT+AGG | - | chr5.2:21620487-21620506 | None:intergenic | 30.0% |
| ! | CTGTTAAGGCTAACAATTTT+TGG | + | chr5.2:21619785-21619804 | MS.gene027820:intron | 30.0% |
| ! | GTAAAATTTGCCAAAGCTTT+TGG | + | chr5.2:21621704-21621723 | MS.gene027820:CDS | 30.0% |
| ! | TATGGTGCTAAATATAGTGA+TGG | + | chr5.2:21621476-21621495 | MS.gene027820:CDS | 30.0% |
| ! | TCTTATACCGATTGTTAGAA+TGG | - | chr5.2:21621292-21621311 | None:intergenic | 30.0% |
| ! | TTTGTTTGCTACTGTTGTAT+TGG | - | chr5.2:21619378-21619397 | None:intergenic | 30.0% |
| !! | TATCGATTTGTGATTGACAT+TGG | + | chr5.2:21622459-21622478 | MS.gene027820:CDS | 30.0% |
| !! | TTCAAAGTTGATGACAAAGT+GGG | + | chr5.2:21621368-21621387 | MS.gene027820:CDS | 30.0% |
| !! | TTTCAAAGTTGATGACAAAG+TGG | + | chr5.2:21621367-21621386 | MS.gene027820:CDS | 30.0% |
| !!! | ATTTTTAGCTATCACTTTCC+TGG | - | chr5.2:21619549-21619568 | None:intergenic | 30.0% |
| !!! | TTCCTCAAAATGTTTTGGTT+AGG | - | chr5.2:21619599-21619618 | None:intergenic | 30.0% |
| !!! | TTTGGACTTTTTCAGAGATT+AGG | - | chr5.2:21619838-21619857 | None:intergenic | 30.0% |
| !!! | TTTTTTTTCAACTCGGTATC+TGG | + | chr5.2:21621868-21621887 | MS.gene027820:intron | 30.0% |
| AAACTTTACCCTGGAACTAA+TGG | - | chr5.2:21620161-21620180 | None:intergenic | 35.0% | |
| AACTTTACCCTGGAACTAAT+GGG | - | chr5.2:21620160-21620179 | None:intergenic | 35.0% | |
| AATTACAGGCACGAAATTGT+TGG | + | chr5.2:21621311-21621330 | MS.gene027820:intron | 35.0% | |
| ATATGCTTACCCACTAGTAA+AGG | - | chr5.2:21622139-21622158 | None:intergenic | 35.0% | |
| ATCTCATGGAAAGCTTGTAT+TGG | + | chr5.2:21622075-21622094 | MS.gene027820:CDS | 35.0% | |
| ATTTCTAATTAGCCGTGATC+CGG | + | chr5.2:21621799-21621818 | MS.gene027820:CDS | 35.0% | |
| CACATTAACTCCAAAAGCTT+TGG | - | chr5.2:21621717-21621736 | None:intergenic | 35.0% | |
| CGGTTAGAAAATAGACGATT+AGG | - | chr5.2:21620732-21620751 | None:intergenic | 35.0% | |
| GATAAAAGAGTCATATGTGG+AGG | - | chr5.2:21619906-21619925 | None:intergenic | 35.0% | |
| GGAAAATACATACTATCTGC+AGG | + | chr5.2:21619326-21619345 | MS.gene027820:intron | 35.0% | |
| GGATTATGTCAATACAGCAA+TGG | + | chr5.2:21622410-21622429 | MS.gene027820:CDS | 35.0% | |
| GTAAATCAATTAGGGGTAAG+AGG | - | chr5.2:21622051-21622070 | None:intergenic | 35.0% | |
| GTGGATAAAAGAGTCATATG+TGG | - | chr5.2:21619909-21619928 | None:intergenic | 35.0% | |
| TACTCACAAGAGGAGAAAAT+TGG | + | chr5.2:21620839-21620858 | MS.gene027820:intron | 35.0% | |
| TGATTTACCTGCATTTGATC+CGG | - | chr5.2:21621821-21621840 | None:intergenic | 35.0% | |
| ! | AACCTTCTGGAGAAATTGAA+AGG | - | chr5.2:21619200-21619219 | None:intergenic | 35.0% |
| ! | ACCTTCTGGAGAAATTGAAA+GGG | - | chr5.2:21619199-21619218 | None:intergenic | 35.0% |
| ! | ATAATTTTCTAGGCTGCAAC+GGG | + | chr5.2:21621983-21622002 | MS.gene027820:intron | 35.0% |
| ! | GACCTAACCAAAACATTTTG+AGG | + | chr5.2:21619594-21619613 | MS.gene027820:intron | 35.0% |
| ! | GATAATTTTCTAGGCTGCAA+CGG | + | chr5.2:21621982-21622001 | MS.gene027820:intron | 35.0% |
| ! | GCTGTATTGACATAATCCAT+AGG | - | chr5.2:21622408-21622427 | None:intergenic | 35.0% |
| ! | TGGCAAATTTTACAGCCATA+TGG | - | chr5.2:21621697-21621716 | None:intergenic | 35.0% |
| ! | TTTTCTCTCATACTCACAAG+AGG | + | chr5.2:21620829-21620848 | MS.gene027820:intron | 35.0% |
| !! | AGTGATGGAAGTATCACATA+TGG | + | chr5.2:21621491-21621510 | MS.gene027820:intron | 35.0% |
| AAGAGGTAAAGTGAACCTTC+TGG | - | chr5.2:21619213-21619232 | None:intergenic | 40.0% | |
| AATTGTTGGTGTAGTGACTG+AGG | + | chr5.2:21621325-21621344 | MS.gene027820:CDS | 40.0% | |
| AGAAAAATGGTAGCTGGTAG+TGG | + | chr5.2:21622303-21622322 | MS.gene027820:CDS | 40.0% | |
| AGCAGCATCAAGTTTGTATG+TGG | - | chr5.2:21620530-21620549 | None:intergenic | 40.0% | |
| AGGGCTATAAACAGTGATTC+CGG | - | chr5.2:21621609-21621628 | None:intergenic | 40.0% | |
| CAAGACTGTCATCACAATCT+TGG | - | chr5.2:21621427-21621446 | None:intergenic | 40.0% | |
| TAGACATGAACGTTCGTTAG+TGG | - | chr5.2:21621923-21621942 | None:intergenic | 40.0% | |
| TATTATGGACTCAACAAGCC+TGG | + | chr5.2:21621635-21621654 | MS.gene027820:CDS | 40.0% | |
| TGAATACGAGCATCCAAAGA+AGG | + | chr5.2:21619133-21619152 | MS.gene027820:CDS | 40.0% | |
| TTCTTTGGATGCTCGTATTC+AGG | - | chr5.2:21619134-21619153 | None:intergenic | 40.0% | |
| ! | CATGGAAAGCTTGTATTGGT+TGG | + | chr5.2:21622079-21622098 | MS.gene027820:CDS | 40.0% |
| ! | CCTTCTGGAGAAATTGAAAG+GGG | - | chr5.2:21619198-21619217 | None:intergenic | 40.0% |
| ! | CTGTTGTATTGGTGTTTGCA+TGG | - | chr5.2:21619367-21619386 | None:intergenic | 40.0% |
| ! | GTGGTAAGGCATTAGGTATA+CGG | - | chr5.2:21621559-21621578 | None:intergenic | 40.0% |
| ! | TAATTTTCTAGGCTGCAACG+GGG | + | chr5.2:21621984-21622003 | MS.gene027820:intron | 40.0% |
| !! | CAAGTTTTGGTCCCCTATTT+TGG | + | chr5.2:21620471-21620490 | MS.gene027820:intron | 40.0% |
| !! | CATTCAAAGTGTTGTACTGC+GGG | + | chr5.2:21620081-21620100 | MS.gene027820:CDS | 40.0% |
| !! | GATGGAAGTATCACATATGG+AGG | + | chr5.2:21621494-21621513 | MS.gene027820:intron | 40.0% |
| !! | GCATTCAAAGTGTTGTACTG+CGG | + | chr5.2:21620080-21620099 | MS.gene027820:CDS | 40.0% |
| ACTATCTAGCCAACATCGAC+TGG | - | chr5.2:21619872-21619891 | None:intergenic | 45.0% | |
| AGAGAAGCCTCTTGAGTTAC+CGG | + | chr5.2:21622108-21622127 | MS.gene027820:CDS | 45.0% | |
| ATCCAAAGAAGGCCTTTGGT+TGG | + | chr5.2:21619144-21619163 | MS.gene027820:CDS | 45.0% | |
| ATGATTATAAGGGCGACCCA+AGG | - | chr5.2:21619977-21619996 | None:intergenic | 45.0% | |
| CCCCTTTCAATTTCTCCAGA+AGG | + | chr5.2:21619195-21619214 | MS.gene027820:CDS | 45.0% | |
| GTAACTCAAGAGGCTTCTCT+GGG | - | chr5.2:21622108-21622127 | None:intergenic | 45.0% | |
| GTAGGGAGAAAAATGGTAGC+TGG | + | chr5.2:21622297-21622316 | MS.gene027820:intron | 45.0% | |
| TAACTCAAGAGGCTTCTCTG+GGG | - | chr5.2:21622107-21622126 | None:intergenic | 45.0% | |
| TCCAAAGAAGGCCTTTGGTT+GGG | + | chr5.2:21619145-21619164 | MS.gene027820:CDS | 45.0% | |
| ! | AACAAGCCTGGTCTTCATGT+GGG | + | chr5.2:21621647-21621666 | MS.gene027820:CDS | 45.0% |
| ! | AACATCGACTGGTCGAAGTT+GGG | - | chr5.2:21619861-21619880 | None:intergenic | 45.0% |
| ! | GCATCAAGTGGTAAGGCATT+AGG | - | chr5.2:21621566-21621585 | None:intergenic | 45.0% |
| ! | TCGTTAGTGGACAGTGGAAT+TGG | - | chr5.2:21621910-21621929 | None:intergenic | 45.0% |
| ! | TTACCCTGGAACTAATGGGT+AGG | - | chr5.2:21620156-21620175 | None:intergenic | 45.0% |
| !! | AATGGTAGCTGGTAGTGGAA+TGG | + | chr5.2:21622308-21622327 | MS.gene027820:CDS | 45.0% |
| !! | AGTTGATGACAAAGTGGGTG+TGG | + | chr5.2:21621373-21621392 | MS.gene027820:CDS | 45.0% |
| !! | ATGGTAGCTGGTAGTGGAAT+GGG | + | chr5.2:21622309-21622328 | MS.gene027820:CDS | 45.0% |
| !! | GTTGATGACAAAGTGGGTGT+GGG | + | chr5.2:21621374-21621393 | MS.gene027820:CDS | 45.0% |
| !! | TAATAATTAAAATATGTTAT+AGG | + | chr5.2:21621176-21621195 | MS.gene027820:intron | 5.0% |
| AAACAGTGATTCCGGCGCAA+AGG | - | chr5.2:21621601-21621620 | None:intergenic | 50.0% | |
| AAAGGGGAGAGAACACCAGA+AGG | - | chr5.2:21619182-21619201 | None:intergenic | 50.0% | |
| AGCAACGGCATCAAGTGGTA+AGG | - | chr5.2:21621573-21621592 | None:intergenic | 50.0% | |
| ATCTCTAGCTGCCCAACCAA+AGG | - | chr5.2:21619159-21619178 | None:intergenic | 50.0% | |
| CAACTTCGACCAGTCGATGT+TGG | + | chr5.2:21619860-21619879 | MS.gene027820:intron | 50.0% | |
| CCACCTACCCATTAGTTCCA+GGG | + | chr5.2:21620150-21620169 | MS.gene027820:CDS | 50.0% | |
| CCTGCATTTGATCCGGATCA+CGG | - | chr5.2:21621814-21621833 | None:intergenic | 50.0% | |
| GAGCATCCAAAGAAGGCCTT+TGG | + | chr5.2:21619140-21619159 | MS.gene027820:CDS | 50.0% | |
| GGTAACTCAAGAGGCTTCTC+TGG | - | chr5.2:21622109-21622128 | None:intergenic | 50.0% | |
| GTTGGTGTAGTGACTGAGGT+GGG | + | chr5.2:21621329-21621348 | MS.gene027820:CDS | 50.0% | |
| TAGTGGAATGGGAGGGATGA+AGG | + | chr5.2:21622320-21622339 | MS.gene027820:CDS | 50.0% | |
| TCCACCTACCCATTAGTTCC+AGG | + | chr5.2:21620149-21620168 | MS.gene027820:CDS | 50.0% | |
| TGTTGGTGTAGTGACTGAGG+TGG | + | chr5.2:21621328-21621347 | MS.gene027820:CDS | 50.0% | |
| ! | CAACAAGCCTGGTCTTCATG+TGG | + | chr5.2:21621646-21621665 | MS.gene027820:CDS | 50.0% |
| ! | CAACATCGACTGGTCGAAGT+TGG | - | chr5.2:21619862-21619881 | None:intergenic | 50.0% |
| ! | GAACGTTCGTTAGTGGACAG+TGG | - | chr5.2:21621916-21621935 | None:intergenic | 50.0% |
| !! | TAGCTGGTAGTGGAATGGGA+GGG | + | chr5.2:21622313-21622332 | MS.gene027820:CDS | 50.0% |
| ACCGGCATGGCCTTTACTAG+TGG | + | chr5.2:21622126-21622145 | MS.gene027820:CDS | 55.0% | |
| AGAGGAGCAACGGCATCAAG+TGG | - | chr5.2:21621578-21621597 | None:intergenic | 55.0% | |
| AGCCTCTTGAGTTACCGGCA+TGG | + | chr5.2:21622113-21622132 | MS.gene027820:CDS | 55.0% | |
| ATCCGTTCTTGGCCATGTGG+AGG | - | chr5.2:21620121-21620140 | None:intergenic | 55.0% | |
| CACATGGCCAAGAACGGATG+GGG | + | chr5.2:21620122-21620141 | MS.gene027820:CDS | 55.0% | |
| CCACATGGCCAAGAACGGAT+GGG | + | chr5.2:21620121-21620140 | MS.gene027820:CDS | 55.0% | |
| CCCACTAGTAAAGGCCATGC+CGG | - | chr5.2:21622130-21622149 | None:intergenic | 55.0% | |
| CCGGCATGGCCTTTACTAGT+GGG | + | chr5.2:21622127-21622146 | MS.gene027820:CDS | 55.0% | |
| CCGTGATCCGGATCAAATGC+AGG | + | chr5.2:21621811-21621830 | MS.gene027820:CDS | 55.0% | |
| GACCTCCACATGGCCAAGAA+CGG | + | chr5.2:21620116-21620135 | MS.gene027820:CDS | 55.0% | |
| GCCCAACCAAAGGCCTTCTT+TGG | - | chr5.2:21619149-21619168 | None:intergenic | 55.0% | |
| GTACTGCGGGATATGCCACA+CGG | + | chr5.2:21620094-21620113 | MS.gene027820:CDS | 55.0% | |
| GTGGGTGTGGGATGCTTAGT+TGG | + | chr5.2:21621386-21621405 | MS.gene027820:CDS | 55.0% | |
| TCCACATGGCCAAGAACGGA+TGG | + | chr5.2:21620120-21620139 | MS.gene027820:CDS | 55.0% | |
| TGGGCAGCTAGAGATCCTTC+TGG | + | chr5.2:21619164-21619183 | MS.gene027820:CDS | 55.0% | |
| ! | CCCTGGAACTAATGGGTAGG+TGG | - | chr5.2:21620153-21620172 | None:intergenic | 55.0% |
| ! | CGACTGGTCGAAGTTGGGTT+TGG | - | chr5.2:21619856-21619875 | None:intergenic | 55.0% |
| ! | TGGAGGCTACTCTGACTCGA+TGG | + | chr5.2:21621511-21621530 | MS.gene027820:intron | 55.0% |
| !! | GTAGCTGGTAGTGGAATGGG+AGG | + | chr5.2:21622312-21622331 | MS.gene027820:CDS | 55.0% |
| ACCACGCCCACATGAAGACC+AGG | - | chr5.2:21621656-21621675 | None:intergenic | 60.0% | |
| ATGCCACACGGACCTCCACA+TGG | + | chr5.2:21620106-21620125 | MS.gene027820:CDS | 60.0% | |
| CCCATCCGTTCTTGGCCATG+TGG | - | chr5.2:21620124-21620143 | None:intergenic | 60.0% | |
| CTAGGCTGCAACGGGGACTT+TGG | + | chr5.2:21621991-21622010 | MS.gene027820:intron | 60.0% | |
| GCTGCAACGGGGACTTTGGA+TGG | + | chr5.2:21621995-21622014 | MS.gene027820:CDS | 60.0% | |
| GGATGTGCCCCATCCGTTCT+TGG | - | chr5.2:21620132-21620151 | None:intergenic | 60.0% | |
| GGCCATGCCGGTAACTCAAG+AGG | - | chr5.2:21622118-21622137 | None:intergenic | 60.0% | |
| GGCGCAAAGGAGAGGAGCAA+CGG | - | chr5.2:21621588-21621607 | None:intergenic | 60.0% | |
| GGTCTTCATGTGGGCGTGGT+TGG | + | chr5.2:21621656-21621675 | MS.gene027820:CDS | 60.0% | |
| GTGATTCCGGCGCAAAGGAG+AGG | - | chr5.2:21621596-21621615 | None:intergenic | 60.0% | |
| GTTGCTCCTCTCCTTTGCGC+CGG | + | chr5.2:21621587-21621606 | MS.gene027820:CDS | 60.0% | |
| ! | TCATGTGGGCGTGGTTGGCT+TGG | + | chr5.2:21621661-21621680 | MS.gene027820:CDS | 60.0% |
| !! | CATGTGGGCGTGGTTGGCTT+GGG | + | chr5.2:21621662-21621681 | MS.gene027820:CDS | 60.0% |
| !! | CTTGGGTGGGTTGGGCCATA+TGG | + | chr5.2:21621679-21621698 | MS.gene027820:CDS | 60.0% |
| !! | GTGGTTGGCTTGGGTGGGTT+GGG | + | chr5.2:21621671-21621690 | MS.gene027820:CDS | 60.0% |
| TGGCCATGTGGAGGTCCGTG+TGG | - | chr5.2:21620112-21620131 | None:intergenic | 65.0% | |
| ! | GCCTGGTCTTCATGTGGGCG+TGG | + | chr5.2:21621652-21621671 | MS.gene027820:CDS | 65.0% |
| !! | CGTGGTTGGCTTGGGTGGGT+TGG | + | chr5.2:21621670-21621689 | MS.gene027820:CDS | 65.0% |
| !! | TGGGCGTGGTTGGCTTGGGT+GGG | + | chr5.2:21621666-21621685 | MS.gene027820:CDS | 65.0% |
| !! | GTGGGCGTGGTTGGCTTGGG+TGG | + | chr5.2:21621665-21621684 | MS.gene027820:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 21619119 | 21622506 | 21619119 | ID=MS.gene027820 |
| chr5.2 | mRNA | 21619119 | 21622506 | 21619119 | ID=MS.gene027820.t1;Parent=MS.gene027820 |
| chr5.2 | exon | 21619119 | 21619216 | 21619119 | ID=MS.gene027820.t1.exon1;Parent=MS.gene027820.t1 |
| chr5.2 | CDS | 21619119 | 21619216 | 21619119 | ID=cds.MS.gene027820.t1;Parent=MS.gene027820.t1 |
| chr5.2 | exon | 21620058 | 21620171 | 21620058 | ID=MS.gene027820.t1.exon2;Parent=MS.gene027820.t1 |
| chr5.2 | CDS | 21620058 | 21620171 | 21620058 | ID=cds.MS.gene027820.t1;Parent=MS.gene027820.t1 |
| chr5.2 | exon | 21621319 | 21621500 | 21621319 | ID=MS.gene027820.t1.exon3;Parent=MS.gene027820.t1 |
| chr5.2 | CDS | 21621319 | 21621500 | 21621319 | ID=cds.MS.gene027820.t1;Parent=MS.gene027820.t1 |
| chr5.2 | exon | 21621540 | 21621832 | 21621540 | ID=MS.gene027820.t1.exon4;Parent=MS.gene027820.t1 |
| chr5.2 | CDS | 21621540 | 21621832 | 21621540 | ID=cds.MS.gene027820.t1;Parent=MS.gene027820.t1 |
| chr5.2 | exon | 21621995 | 21622148 | 21621995 | ID=MS.gene027820.t1.exon5;Parent=MS.gene027820.t1 |
| chr5.2 | CDS | 21621995 | 21622148 | 21621995 | ID=cds.MS.gene027820.t1;Parent=MS.gene027820.t1 |
| chr5.2 | exon | 21622301 | 21622506 | 21622301 | ID=MS.gene027820.t1.exon6;Parent=MS.gene027820.t1 |
| chr5.2 | CDS | 21622301 | 21622506 | 21622301 | ID=cds.MS.gene027820.t1;Parent=MS.gene027820.t1 |
| Gene Sequence |
| Protein sequence |
