AlfalfaGEDB | MS.gene068613

M. sativa cultivar XinJiangDaYe / MS.gene068613

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0008152 GO:0008270 GO:0016491 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0055114
PFAM: PF00107.29 PF08240.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068613.t1	XP_003612984.1	95.9	362	15	0	1	362	1	362	9.20E-202	712.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068613.t1	Q9ZRF1	80.1	351	70	0	9	359	6	356	2.4e-166	586.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068613.t1	G7KGI7	95.9	362	15	0	1	362	1	362	6.7e-202	712.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene027821	MS.gene068613	PPI
MS.gene068611	MS.gene068613	PPI
MS.gene068613	MS.gene027818	PPI
MS.gene068613	MS.gene069153	PPI
MS.gene068613	MS.gene002258	PPI
MS.gene068613	MS.gene027823	PPI
MS.gene068613	MS.gene069154	PPI
MS.gene068613	MS.gene027820	PPI
MS.gene068613	MS.gene069147	PPI
MS.gene068613	MS.gene069148	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene068613.t1	MTR_5g031310	95.856	362	15	0	1	362	1	362	694
MS.gene068613.t1	MTR_5g031305	93.370	362	24	0	1	362	1	362	682
MS.gene068613.t1	MTR_5g031300	84.211	361	57	0	1	361	1	361	625
MS.gene068613.t1	MTR_5g031360	86.592	358	48	0	5	362	6	363	624
MS.gene068613.t1	MTR_5g031230	82.548	361	62	1	1	361	1	360	597
MS.gene068613.t1	MTR_4g115300	82.203	354	63	0	8	361	7	360	591
MS.gene068613.t1	MTR_5g031390	82.486	354	62	0	8	361	7	360	587
MS.gene068613.t1	MTR_5g031250	80.055	361	71	1	1	361	1	360	576
MS.gene068613.t1	MTR_5g031210	79.379	354	73	0	8	361	7	360	562
MS.gene068613.t1	MTR_5g031190	75.637	353	86	0	9	361	8	360	549

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068613.t1	AT4G37980	71.709	357	99	1	6	362	3	357	1.61e-175	492
MS.gene068613.t1	AT4G37990	70.868	357	102	1	6	362	3	357	1.83e-171	482
MS.gene068613.t1	AT4G37970	63.173	353	130	0	9	361	9	361	1.91e-163	461
MS.gene068613.t1	AT4G39330	62.500	352	132	0	9	360	8	359	2.03e-162	459
MS.gene068613.t1	AT2G21730	60.571	350	136	2	13	360	6	355	4.68e-150	428
MS.gene068613.t1	AT2G21890	59.885	349	139	1	13	360	6	354	6.07e-150	428
MS.gene068613.t1	AT4G37980	70.470	298	86	1	6	303	3	298	3.92e-135	387
MS.gene068613.t1	AT4G39330	62.162	296	112	0	9	304	8	303	3.06e-131	378
MS.gene068613.t1	AT4G37970	61.724	290	111	0	9	298	9	298	8.84e-127	366
MS.gene068613.t1	AT3G19450	52.312	346	165	0	12	357	9	354	5.69e-115	338

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Find 91 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAATCAATGGTAAAAT+AGG	0.229602	5.1:+21576834	None:intergenic
AAAGGAAGCAATAGAACACT+TGG	0.509890	5.1:-21577044	MS.gene068613:CDS
AAAGGGGAGAGAACACCAGA+AGG	0.635132	5.1:+21578042	None:intergenic
AAAGTGGAAAAGTTTAAAGT+TGG	0.429905	5.1:-21577454	MS.gene068613:CDS
AAATGCAGGCATGAACTTGC+GGG	0.418681	5.1:-21577499	MS.gene068613:intron
AACCGAGGTAGGAAGCAAAG+TGG	0.665272	5.1:-21577470	MS.gene068613:CDS
AACCTTCTGGAGAAATTGAA+AGG	0.504412	5.1:+21578024	None:intergenic
AACTTACCTCTTGATGTTGC+CGG	0.388597	5.1:-21577241	MS.gene068613:CDS
AAGGAAGCAATAGAACACTT+GGG	0.667331	5.1:-21577043	MS.gene068613:CDS
AAGTTTAATTGGAGGGATAA+AGG	0.373525	5.1:-21576595	MS.gene068613:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTTTAATTGGAGGGATAA+AGG	-	chr5.1:21577941-21577960	MS.gene068613:intron	30.0%
ATAATTGTAGTAGAAGGAGT+TGG	+	chr5.1:21576896-21576915	None:intergenic	30.0%
ATAGGAATAACCTCAATATC+AGG	+	chr5.1:21578011-21578030	None:intergenic	30.0%
ATCTAATGGAAAGCTTGTAA+TGG	-	chr5.1:21577731-21577750	MS.gene068613:CDS	30.0%
CATATGATGAAGAATGAATG+GGG	-	chr5.1:21576835-21576854	MS.gene068613:CDS	30.0%
CCTACTAATTAAGTCAACTT+TGG	-	chr5.1:21576732-21576751	MS.gene068613:intron	30.0%
TACTTTATTCCTACGTTACT+TGG	-	chr5.1:21576915-21576934	MS.gene068613:intron	30.0%
TTAGTAGCTGGAAGTTTAAT+TGG	-	chr5.1:21577930-21577949	MS.gene068613:intron	30.0%
AAAGGAAGCAATAGAACACT+TGG	-	chr5.1:21577492-21577511	MS.gene068613:CDS	35.0%
AAGGAAGCAATAGAACACTT+GGG	-	chr5.1:21577493-21577512	MS.gene068613:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	21576431	21578127	21576431	ID=MS.gene068613
chr5.1	mRNA	21576431	21578127	21576431	ID=MS.gene068613.t1;Parent=MS.gene068613
chr5.1	exon	21578027	21578127	21578027	ID=MS.gene068613.t1.exon1;Parent=MS.gene068613.t1
chr5.1	CDS	21578027	21578127	21578027	ID=cds.MS.gene068613.t1;Parent=MS.gene068613.t1
chr5.1	exon	21577674	21577787	21577674	ID=MS.gene068613.t1.exon2;Parent=MS.gene068613.t1
chr5.1	CDS	21577674	21577787	21577674	ID=cds.MS.gene068613.t1;Parent=MS.gene068613.t1
chr5.1	exon	21577000	21577513	21577000	ID=MS.gene068613.t1.exon3;Parent=MS.gene068613.t1
chr5.1	CDS	21577000	21577513	21577000	ID=cds.MS.gene068613.t1;Parent=MS.gene068613.t1
chr5.1	exon	21576754	21576907	21576754	ID=MS.gene068613.t1.exon4;Parent=MS.gene068613.t1
chr5.1	CDS	21576754	21576907	21576754	ID=cds.MS.gene068613.t1;Parent=MS.gene068613.t1
chr5.1	exon	21576431	21576636	21576431	ID=MS.gene068613.t1.exon5;Parent=MS.gene068613.t1
chr5.1	CDS	21576431	21576636	21576431	ID=cds.MS.gene068613.t1;Parent=MS.gene068613.t1

Gene Sequence

>MS.gene068613

ATGGCAACAGAAACTAAAGTGTTAGAGCATCCTAAGAAGGCCTTTGGTTGGGCAGCTAGAGATCCTTCTGGTGTTCTCTCCCCTTTCAATTTCTCCAGAAGGTTTACTTCATTATAATCAACTCATCTTTATTTAATGGATTGAAATAATATTTGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATATTTTTTTTTACTTAATTTAGATCTATGTTGTTGCCTACTAATTAAGTCAACTTTGGTGCATCAAAACTTTAGGGAAACTGGTGAGAAAGATGTAGCATTCAAGGTGTTGTATTGTGGGATATGTCACACTGACCTTCATATGATGAAGAATGAATGGGGCAATTCCATCTATCCATTAGTTCCAGGGTATGCTTCCAACTCCTTCTACTACAATTATACTTTATTCCTACGTTACTTGGACCATATATATCTTTATACTTACTTTAATGATGAGAGAGTGAAAAGTTGAATGAGTCAATAAAAAGTAAGAGTATATTTGAAATTTGCTTATAATTAATAAATGCAGGCATGAACTTGCGGGTATAGTAACCGAGGTAGGAAGCAAAGTGGAAAAGTTTAAAGTTGGAGACAAAGTAGGTGTGGGATACATGGTTGATTCATGTCGTTCATGCGAAAATTGTGCTGACGATCTTGAGAATTACTGCCCCCAACAAACAGTCACATGTGGTGCCAAGTATCGTGATGGCACCGTCACATATGGAGGTTATTCTGACTCAATGGTTGCAGACGAGCACTTTGTGATTCGCATTCCTGATAACTTACCTCTTGATGTTGCCGGTCCTCTTCTTTGCGCTGGAGTCACAGTGTATAGTCCTCTTCGACATTTTGGACTCGACAAACCTGGTATGAATATAGGTGTTGTTGGTCTTGGTGGACTTGGTCATATGGCTGTGAAATTCGCCAAAGCTTTTGGTGCTAATGTGACCGTAATTAGCACATCTCGTAACAAAGAAAAGGAAGCAATAGAACACTTGGGAGCTGACTCGTTTCTTGTAAGCTGCGATCCAGATCAGATGCAGGTATTTGATTCATTTGATTAATTTGTGAATTTCATTATTTCAGAAATCGAGAATGTTAATCAAGAAACTAATAATGTACCACATTTTAATAGGCTGCAACAGGTACTTTGAATGGTATTATTGACACGGTTTCAGCGAGTCATCCTATTTTACCATTGATTGGTTTATTGAAATCTAATGGAAAGCTTGTAATGGTTGGTGGAGTGGCAAAGCCTCTAGAGCTTCCTGTATTTTCTTTACTTGGAGGTAAGCATATAAAAAATATTTCGATAGTATAGTTTTAAGACTAAATGCTAAATATGCAGTTTTAAATTCAAATTATGCAGAATGTTGATACTTGTATAAATTTCACATTATTTGTAGGGAGAAAGTTAGTAGCTGGAAGTTTAATTGGAGGGATAAAGGAGACTCAAGAAATGATTGATTTTGCGGCAAAACACAATGTAAAGCCTGATATTGAGGTTATTCCTATTGATTATGTCAACACAGCAGTGGAGCGTCTCGAGAAAGCAGACGTGAAATATCGATTCGTGATTGATATTGGAAATACGCTGAAACCAAGCCCTTAA

Protein sequence

>MS.gene068613.t1

MATETKVLEHPKKAFGWAARDPSGVLSPFNFSRRETGEKDVAFKVLYCGICHTDLHMMKNEWGNSIYPLVPGHELAGIVTEVGSKVEKFKVGDKVGVGYMVDSCRSCENCADDLENYCPQQTVTCGAKYRDGTVTYGGYSDSMVADEHFVIRIPDNLPLDVAGPLLCAGVTVYSPLRHFGLDKPGMNIGVVGLGGLGHMAVKFAKAFGANVTVISTSRNKEKEAIEHLGADSFLVSCDPDQMQAATGTLNGIIDTVSASHPILPLIGLLKSNGKLVMVGGVAKPLELPVFSLLGGRKLVAGSLIGGIKETQEMIDFAAKHNVKPDIEVIPIDYVNTAVERLEKADVKYRFVIDIGNTLKPSP