Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069147.t1 | RHN54898.1 | 98.1 | 362 | 7 | 0 | 1 | 362 | 15 | 376 | 1.90E-207 | 731.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069147.t1 | Q9ZRF1 | 75.7 | 354 | 86 | 0 | 9 | 362 | 6 | 359 | 1.7e-164 | 580.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069147.t1 | G7KGI6 | 98.1 | 362 | 7 | 0 | 1 | 362 | 1 | 362 | 1.4e-207 | 731.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene069147 | 0.860247 | 2.36E-63 | -1.69E-46 |
| MS.gene049297 | MS.gene069147 | 0.832686 | 8.21E-56 | -1.69E-46 |
| MS.gene049758 | MS.gene069147 | 0.831913 | 1.27E-55 | -1.69E-46 |
| MS.gene050020 | MS.gene069147 | 0.814291 | 1.66E-51 | -1.69E-46 |
| MS.gene050099 | MS.gene069147 | 0.803027 | 4.24E-49 | -1.69E-46 |
| MS.gene050128 | MS.gene069147 | 0.835475 | 1.64E-56 | -1.69E-46 |
| MS.gene050301 | MS.gene069147 | 0.832227 | 1.07E-55 | -1.69E-46 |
| MS.gene050558 | MS.gene069147 | 0.800693 | 1.28E-48 | -1.69E-46 |
| MS.gene050584 | MS.gene069147 | 0.805728 | 1.16E-49 | -1.69E-46 |
| MS.gene050586 | MS.gene069147 | 0.83152 | 1.59E-55 | -1.69E-46 |
| MS.gene050807 | MS.gene069147 | 0.800033 | 1.74E-48 | -1.69E-46 |
| MS.gene051626 | MS.gene069147 | 0.809937 | 1.48E-50 | -1.69E-46 |
| MS.gene051662 | MS.gene069147 | 0.802123 | 6.51E-49 | -1.69E-46 |
| MS.gene051663 | MS.gene069147 | 0.815925 | 7.20E-52 | -1.69E-46 |
| MS.gene051789 | MS.gene069147 | 0.865917 | 4.17E-65 | -1.69E-46 |
| MS.gene051860 | MS.gene069147 | 0.816259 | 6.07E-52 | -1.69E-46 |
| MS.gene052078 | MS.gene069147 | 0.801465 | 8.89E-49 | -1.69E-46 |
| MS.gene052178 | MS.gene069147 | 0.870448 | 1.45E-66 | -1.69E-46 |
| MS.gene053074 | MS.gene069147 | 0.844716 | 6.36E-59 | -1.69E-46 |
| MS.gene053204 | MS.gene069147 | 0.81334 | 2.69E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene069147 | 0.851252 | 1.00E-60 | -1.69E-46 |
| MS.gene054010 | MS.gene069147 | 0.817741 | 2.82E-52 | -1.69E-46 |
| MS.gene054011 | MS.gene069147 | 0.83165 | 1.48E-55 | -1.69E-46 |
| MS.gene054012 | MS.gene069147 | 0.836195 | 1.08E-56 | -1.69E-46 |
| MS.gene054013 | MS.gene069147 | 0.834314 | 3.22E-56 | -1.69E-46 |
| MS.gene054184 | MS.gene069147 | 0.809062 | 2.28E-50 | -1.69E-46 |
| MS.gene054185 | MS.gene069147 | 0.810259 | 1.26E-50 | -1.69E-46 |
| MS.gene054214 | MS.gene069147 | 0.876131 | 1.78E-68 | -1.69E-46 |
| MS.gene054473 | MS.gene069147 | 0.810602 | 1.06E-50 | -1.69E-46 |
| MS.gene05456 | MS.gene069147 | 0.810814 | 9.56E-51 | -1.69E-46 |
| MS.gene054596 | MS.gene069147 | 0.814002 | 1.92E-51 | -1.69E-46 |
| MS.gene054942 | MS.gene069147 | 0.818675 | 1.73E-52 | -1.69E-46 |
| MS.gene055207 | MS.gene069147 | 0.827397 | 1.60E-54 | -1.69E-46 |
| MS.gene055277 | MS.gene069147 | 0.830441 | 2.93E-55 | -1.69E-46 |
| MS.gene055303 | MS.gene069147 | 0.822628 | 2.14E-53 | -1.69E-46 |
| MS.gene055422 | MS.gene069147 | 0.827704 | 1.35E-54 | -1.69E-46 |
| MS.gene055428 | MS.gene069147 | 0.847467 | 1.14E-59 | -1.69E-46 |
| MS.gene055604 | MS.gene069147 | 0.85964 | 3.60E-63 | -1.69E-46 |
| MS.gene056069 | MS.gene069147 | -0.82188 | 3.19E-53 | -1.69E-46 |
| MS.gene056612 | MS.gene069147 | 0.802825 | 4.67E-49 | -1.69E-46 |
| MS.gene056629 | MS.gene069147 | 0.832005 | 1.21E-55 | -1.69E-46 |
| MS.gene056772 | MS.gene069147 | 0.868613 | 5.73E-66 | -1.69E-46 |
| MS.gene056931 | MS.gene069147 | 0.807371 | 5.22E-50 | -1.69E-46 |
| MS.gene056933 | MS.gene069147 | 0.807659 | 4.54E-50 | -1.69E-46 |
| MS.gene05702 | MS.gene069147 | 0.804947 | 1.69E-49 | -1.69E-46 |
| MS.gene057121 | MS.gene069147 | 0.821301 | 4.34E-53 | -1.69E-46 |
| MS.gene057245 | MS.gene069147 | 0.812767 | 3.59E-51 | -1.69E-46 |
| MS.gene057439 | MS.gene069147 | 0.826273 | 2.97E-54 | -1.69E-46 |
| MS.gene057469 | MS.gene069147 | 0.807875 | 4.08E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene069147 | 0.839022 | 2.03E-57 | -1.69E-46 |
| MS.gene05811 | MS.gene069147 | 0.828183 | 1.04E-54 | -1.69E-46 |
| MS.gene058142 | MS.gene069147 | 0.804787 | 1.83E-49 | -1.69E-46 |
| MS.gene058749 | MS.gene069147 | 0.806915 | 6.52E-50 | -1.69E-46 |
| MS.gene058833 | MS.gene069147 | 0.816311 | 5.91E-52 | -1.69E-46 |
| MS.gene059006 | MS.gene069147 | 0.841489 | 4.61E-58 | -1.69E-46 |
| MS.gene05907 | MS.gene069147 | 0.801539 | 8.59E-49 | -1.69E-46 |
| MS.gene059228 | MS.gene069147 | 0.844876 | 5.76E-59 | -1.69E-46 |
| MS.gene059294 | MS.gene069147 | 0.812518 | 4.07E-51 | -1.69E-46 |
| MS.gene059518 | MS.gene069147 | 0.840082 | 1.08E-57 | -1.69E-46 |
| MS.gene05984 | MS.gene069147 | 0.83522 | 1.91E-56 | -1.69E-46 |
| MS.gene059894 | MS.gene069147 | 0.829086 | 6.27E-55 | -1.69E-46 |
| MS.gene059974 | MS.gene069147 | 0.808834 | 2.55E-50 | -1.69E-46 |
| MS.gene060005 | MS.gene069147 | 0.832002 | 1.21E-55 | -1.69E-46 |
| MS.gene06037 | MS.gene069147 | 0.813229 | 2.85E-51 | -1.69E-46 |
| MS.gene060476 | MS.gene069147 | 0.845554 | 3.78E-59 | -1.69E-46 |
| MS.gene060559 | MS.gene069147 | 0.818163 | 2.26E-52 | -1.69E-46 |
| MS.gene061049 | MS.gene069147 | 0.831925 | 1.27E-55 | -1.69E-46 |
| MS.gene061112 | MS.gene069147 | 0.831768 | 1.38E-55 | -1.69E-46 |
| MS.gene061113 | MS.gene069147 | 0.809281 | 2.05E-50 | -1.69E-46 |
| MS.gene061265 | MS.gene069147 | 0.83782 | 4.15E-57 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069147.t1 | MTR_5g031300 | 98.066 | 362 | 7 | 0 | 1 | 362 | 1 | 362 | 0.0 | 732 |
| MS.gene069147.t1 | MTR_5g031305 | 83.380 | 361 | 60 | 0 | 1 | 361 | 1 | 361 | 0.0 | 627 |
| MS.gene069147.t1 | MTR_5g031310 | 83.934 | 361 | 58 | 0 | 1 | 361 | 1 | 361 | 0.0 | 625 |
| MS.gene069147.t1 | MTR_5g031230 | 80.110 | 362 | 71 | 1 | 1 | 362 | 1 | 361 | 0.0 | 597 |
| MS.gene069147.t1 | MTR_4g115300 | 79.379 | 354 | 73 | 0 | 9 | 362 | 8 | 361 | 0.0 | 588 |
| MS.gene069147.t1 | MTR_5g031360 | 78.992 | 357 | 75 | 0 | 5 | 361 | 6 | 362 | 0.0 | 580 |
| MS.gene069147.t1 | MTR_5g031390 | 79.379 | 354 | 73 | 0 | 9 | 362 | 8 | 361 | 0.0 | 574 |
| MS.gene069147.t1 | MTR_5g031250 | 78.177 | 362 | 78 | 1 | 1 | 362 | 1 | 361 | 0.0 | 573 |
| MS.gene069147.t1 | MTR_5g031210 | 77.966 | 354 | 78 | 0 | 9 | 362 | 8 | 361 | 0.0 | 558 |
| MS.gene069147.t1 | MTR_5g031190 | 72.881 | 354 | 96 | 0 | 9 | 362 | 8 | 361 | 0.0 | 542 |
| MS.gene069147.t1 | MTR_5g031180 | 77.183 | 355 | 81 | 0 | 8 | 362 | 7 | 361 | 0.0 | 540 |
| MS.gene069147.t1 | MTR_8g068190 | 75.424 | 354 | 87 | 0 | 8 | 361 | 7 | 360 | 0.0 | 532 |
| MS.gene069147.t1 | MTR_8g092630 | 58.402 | 363 | 145 | 2 | 2 | 359 | 53 | 414 | 1.30e-148 | 426 |
| MS.gene069147.t1 | MTR_5g031430 | 60.580 | 345 | 136 | 0 | 15 | 359 | 14 | 358 | 3.80e-144 | 412 |
| MS.gene069147.t1 | MTR_5g031250 | 80.579 | 242 | 46 | 1 | 1 | 242 | 1 | 241 | 1.44e-136 | 389 |
| MS.gene069147.t1 | MTR_1g025950 | 55.587 | 349 | 154 | 1 | 9 | 356 | 7 | 355 | 2.82e-129 | 375 |
| MS.gene069147.t1 | MTR_1g107425 | 53.644 | 343 | 159 | 0 | 12 | 354 | 9 | 351 | 1.19e-122 | 358 |
| MS.gene069147.t1 | MTR_2g009810 | 52.890 | 346 | 161 | 2 | 15 | 359 | 62 | 406 | 1.07e-115 | 342 |
| MS.gene069147.t1 | MTR_1g107425 | 55.072 | 276 | 124 | 0 | 12 | 287 | 9 | 284 | 9.87e-98 | 292 |
| MS.gene069147.t1 | MTR_2g009820 | 51.073 | 233 | 109 | 2 | 131 | 359 | 23 | 254 | 2.90e-61 | 197 |
| MS.gene069147.t1 | MTR_5g031290 | 61.151 | 139 | 50 | 1 | 227 | 361 | 55 | 193 | 7.91e-52 | 171 |
| MS.gene069147.t1 | MTR_5g031290 | 85.185 | 81 | 10 | 2 | 1 | 80 | 1 | 80 | 8.15e-42 | 145 |
| MS.gene069147.t1 | MTR_8g095220 | 26.510 | 298 | 187 | 8 | 11 | 280 | 51 | 344 | 3.03e-20 | 91.7 |
| MS.gene069147.t1 | MTR_8g095220 | 28.516 | 256 | 156 | 7 | 11 | 243 | 51 | 302 | 4.01e-20 | 90.1 |
| MS.gene069147.t1 | MTR_0001s0660 | 27.483 | 302 | 191 | 9 | 39 | 317 | 35 | 331 | 1.20e-17 | 84.3 |
| MS.gene069147.t1 | MTR_6g466320 | 25.818 | 275 | 181 | 7 | 26 | 288 | 29 | 292 | 1.12e-16 | 80.9 |
| MS.gene069147.t1 | MTR_6g465010 | 25.818 | 275 | 181 | 7 | 26 | 288 | 29 | 292 | 1.12e-16 | 80.9 |
| MS.gene069147.t1 | MTR_6g465010 | 25.818 | 275 | 181 | 7 | 26 | 288 | 13 | 276 | 1.13e-16 | 80.5 |
| MS.gene069147.t1 | MTR_3g089940 | 21.958 | 378 | 254 | 12 | 1 | 345 | 1 | 370 | 1.08e-13 | 72.0 |
| MS.gene069147.t1 | MTR_3g089940 | 21.958 | 378 | 254 | 12 | 1 | 345 | 1 | 370 | 1.44e-13 | 71.6 |
| MS.gene069147.t1 | MTR_7g068320 | 26.301 | 346 | 205 | 12 | 40 | 344 | 48 | 384 | 1.52e-13 | 71.6 |
| MS.gene069147.t1 | MTR_3g089977 | 21.751 | 377 | 253 | 13 | 12 | 355 | 12 | 379 | 1.56e-13 | 71.6 |
| MS.gene069147.t1 | MTR_3g099460 | 27.937 | 315 | 185 | 14 | 40 | 320 | 44 | 350 | 3.15e-13 | 70.5 |
| MS.gene069147.t1 | MTR_3g099460 | 27.937 | 315 | 185 | 14 | 40 | 320 | 37 | 343 | 3.32e-13 | 70.5 |
| MS.gene069147.t1 | MTR_7g099040 | 25.490 | 357 | 223 | 15 | 2 | 328 | 4 | 347 | 6.48e-13 | 69.7 |
| MS.gene069147.t1 | MTR_5g045710 | 24.024 | 333 | 222 | 8 | 39 | 343 | 35 | 364 | 2.35e-12 | 67.8 |
| MS.gene069147.t1 | MTR_1g069430 | 25.948 | 343 | 212 | 15 | 1 | 313 | 1 | 331 | 2.40e-12 | 67.8 |
| MS.gene069147.t1 | MTR_7g068330 | 27.616 | 344 | 202 | 17 | 40 | 344 | 41 | 376 | 2.72e-12 | 67.8 |
| MS.gene069147.t1 | MTR_3g089940 | 23.693 | 287 | 188 | 8 | 1 | 263 | 1 | 280 | 3.24e-12 | 67.4 |
| MS.gene069147.t1 | MTR_3g089940 | 23.693 | 287 | 188 | 8 | 1 | 263 | 1 | 280 | 3.97e-12 | 67.0 |
| MS.gene069147.t1 | MTR_3g089970 | 21.809 | 376 | 253 | 12 | 3 | 345 | 4 | 371 | 8.21e-12 | 66.2 |
| MS.gene069147.t1 | MTR_5g031380 | 58.537 | 41 | 17 | 0 | 81 | 121 | 19 | 59 | 3.63e-11 | 60.1 |
| MS.gene069147.t1 | MTR_3g099460 | 32.886 | 149 | 74 | 5 | 40 | 167 | 44 | 187 | 4.48e-11 | 63.5 |
| MS.gene069147.t1 | MTR_3g099460 | 32.886 | 149 | 74 | 5 | 40 | 167 | 37 | 180 | 4.58e-11 | 63.5 |
| MS.gene069147.t1 | MTR_3g079180 | 26.510 | 298 | 187 | 13 | 39 | 308 | 40 | 333 | 5.52e-11 | 63.9 |
| MS.gene069147.t1 | MTR_5g087710 | 26.100 | 341 | 212 | 12 | 40 | 345 | 46 | 381 | 8.90e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069147.t1 | AT4G37980 | 69.101 | 356 | 108 | 1 | 6 | 361 | 3 | 356 | 2.85e-173 | 486 |
| MS.gene069147.t1 | AT4G37990 | 68.857 | 350 | 109 | 0 | 12 | 361 | 7 | 356 | 8.02e-167 | 470 |
| MS.gene069147.t1 | AT4G37970 | 61.190 | 353 | 137 | 0 | 9 | 361 | 9 | 361 | 7.25e-163 | 460 |
| MS.gene069147.t1 | AT4G39330 | 60.340 | 353 | 140 | 0 | 8 | 360 | 7 | 359 | 3.49e-161 | 456 |
| MS.gene069147.t1 | AT2G21890 | 58.405 | 351 | 145 | 1 | 13 | 362 | 6 | 356 | 4.36e-151 | 431 |
| MS.gene069147.t1 | AT2G21730 | 58.807 | 352 | 143 | 2 | 13 | 362 | 6 | 357 | 1.97e-150 | 429 |
| MS.gene069147.t1 | AT4G37980 | 68.707 | 294 | 90 | 1 | 6 | 299 | 3 | 294 | 9.60e-135 | 386 |
| MS.gene069147.t1 | AT4G39330 | 59.322 | 295 | 120 | 0 | 8 | 302 | 7 | 301 | 5.02e-128 | 370 |
| MS.gene069147.t1 | AT4G37970 | 58.966 | 290 | 119 | 0 | 9 | 298 | 9 | 298 | 1.23e-123 | 358 |
| MS.gene069147.t1 | AT3G19450 | 54.046 | 346 | 159 | 0 | 12 | 357 | 9 | 354 | 5.69e-117 | 343 |
| MS.gene069147.t1 | AT1G72680 | 50.146 | 343 | 170 | 1 | 17 | 359 | 14 | 355 | 2.53e-113 | 334 |
| MS.gene069147.t1 | AT4G34230 | 52.586 | 348 | 165 | 0 | 7 | 354 | 3 | 350 | 6.27e-107 | 318 |
| MS.gene069147.t1 | AT4G34230 | 52.299 | 348 | 166 | 0 | 7 | 354 | 3 | 350 | 4.39e-106 | 315 |
| MS.gene069147.t1 | AT4G37970 | 59.072 | 237 | 97 | 0 | 9 | 245 | 9 | 245 | 2.70e-99 | 295 |
| MS.gene069147.t1 | AT4G37970 | 59.574 | 235 | 95 | 0 | 9 | 243 | 9 | 243 | 5.20e-99 | 294 |
| MS.gene069147.t1 | AT5G63620 | 25.685 | 292 | 187 | 7 | 16 | 280 | 58 | 346 | 1.13e-20 | 93.2 |
| MS.gene069147.t1 | AT5G63620 | 25.685 | 292 | 187 | 7 | 16 | 280 | 58 | 346 | 1.47e-20 | 92.8 |
| MS.gene069147.t1 | AT5G63620 | 28.390 | 236 | 146 | 5 | 16 | 230 | 58 | 291 | 3.77e-20 | 90.5 |
| MS.gene069147.t1 | AT1G22430 | 26.183 | 317 | 202 | 12 | 40 | 328 | 42 | 354 | 1.70e-17 | 83.6 |
| MS.gene069147.t1 | AT1G22430 | 26.183 | 317 | 202 | 12 | 40 | 328 | 42 | 354 | 1.70e-17 | 83.6 |
| MS.gene069147.t1 | AT1G64710 | 26.509 | 381 | 233 | 15 | 1 | 344 | 1 | 371 | 3.72e-17 | 82.4 |
| MS.gene069147.t1 | AT5G51970 | 26.562 | 256 | 167 | 6 | 37 | 280 | 40 | 286 | 6.90e-17 | 81.3 |
| MS.gene069147.t1 | AT5G51970 | 26.562 | 256 | 167 | 6 | 37 | 280 | 40 | 286 | 6.90e-17 | 81.3 |
| MS.gene069147.t1 | AT5G43940 | 25.964 | 389 | 239 | 16 | 1 | 353 | 1 | 376 | 1.18e-16 | 80.9 |
| MS.gene069147.t1 | AT1G64710 | 26.608 | 342 | 208 | 13 | 40 | 344 | 13 | 348 | 2.82e-16 | 79.7 |
| MS.gene069147.t1 | AT5G43940 | 26.000 | 350 | 214 | 13 | 40 | 353 | 48 | 388 | 3.80e-16 | 79.3 |
| MS.gene069147.t1 | AT1G32780 | 26.158 | 367 | 214 | 16 | 40 | 359 | 37 | 393 | 1.31e-15 | 77.8 |
| MS.gene069147.t1 | AT4G22110 | 24.927 | 341 | 215 | 16 | 40 | 344 | 43 | 378 | 1.86e-15 | 77.4 |
| MS.gene069147.t1 | AT4G22110 | 24.927 | 341 | 215 | 16 | 40 | 344 | 43 | 378 | 1.86e-15 | 77.4 |
| MS.gene069147.t1 | AT1G22430 | 26.500 | 200 | 128 | 5 | 40 | 222 | 42 | 239 | 4.82e-13 | 69.7 |
| MS.gene069147.t1 | AT1G22430 | 26.500 | 200 | 128 | 5 | 40 | 222 | 42 | 239 | 4.84e-13 | 69.3 |
| MS.gene069147.t1 | AT1G22430 | 26.500 | 200 | 128 | 5 | 40 | 222 | 42 | 239 | 4.84e-13 | 69.3 |
| MS.gene069147.t1 | AT1G22440 | 24.857 | 350 | 206 | 14 | 40 | 345 | 40 | 376 | 6.53e-13 | 69.7 |
| MS.gene069147.t1 | AT5G42250 | 25.000 | 296 | 193 | 9 | 40 | 308 | 45 | 338 | 4.88e-12 | 67.0 |
| MS.gene069147.t1 | AT1G77120 | 22.338 | 385 | 262 | 14 | 1 | 355 | 1 | 378 | 1.74e-11 | 65.5 |
| MS.gene069147.t1 | AT4G22110 | 26.267 | 217 | 138 | 9 | 40 | 237 | 43 | 256 | 2.60e-11 | 63.9 |
Find 90 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCACATGTGACTACAAATT+TGG | 0.137677 | 5.3:+20347386 | None:intergenic |
| TATCGATTTGTGATTGATAT+TGG | 0.198958 | 5.3:-20346455 | MS.gene069147:CDS |
| GCCCAACCAAAGGCCTTCTT+TGG | 0.253742 | 5.3:+20348570 | None:intergenic |
| TCCATTTATCCACTTGTTCC+TGG | 0.254331 | 5.3:-20347783 | MS.gene069147:CDS |
| CCCAGGAACAAGTGGATAAA+TGG | 0.269203 | 5.3:+20347782 | None:intergenic |
| CAAGATTGTCATTACAATCT+TGG | 0.292744 | 5.3:+20347421 | None:intergenic |
| CCACATGTGACTACAAATTT+GGG | 0.308824 | 5.3:+20347387 | None:intergenic |
| CCTGAATATACTTTAATTCA+AGG | 0.316011 | 5.3:-20346784 | MS.gene069147:intron |
| GTGAAATTTGCCAAAGCTTT+CGG | 0.316975 | 5.3:-20347141 | MS.gene069147:CDS |
| GAGTCAAGTTGGAGGGTTAA+AGG | 0.329887 | 5.3:-20346594 | MS.gene069147:CDS |
| TCTTGGTGGACTTGGCCATA+TGG | 0.337845 | 5.3:-20347166 | MS.gene069147:CDS |
| GGTTTACATATAGGTGTTGT+TGG | 0.340460 | 5.3:-20347189 | MS.gene069147:CDS |
| TATGGTACCTGAATCTGCTT+TGG | 0.345939 | 5.3:+20347027 | None:intergenic |
| CCTTGAATTAAAGTATATTC+AGG | 0.347223 | 5.3:+20346784 | None:intergenic |
| CATATAGGTGTTGTTGGTCT+TGG | 0.355070 | 5.3:-20347183 | MS.gene069147:CDS |
| CCCATTCATTCTTCGCCATA+TGG | 0.361451 | 5.3:+20347811 | None:intergenic |
| TAGTGACCCAAAGCAGATTC+AGG | 0.370893 | 5.3:-20347034 | MS.gene069147:intron |
| GTTGTTGGTCTTGGTGGACT+TGG | 0.372585 | 5.3:-20347174 | MS.gene069147:CDS |
| AACATACCTCTTGAATTTGC+TGG | 0.378852 | 5.3:-20347276 | MS.gene069147:CDS |
| CATCCTCTCTTACCAATGAT+TGG | 0.384438 | 5.3:-20346868 | MS.gene069147:CDS |
| TCCTGCAAAGTTTAAGAGCT+TGG | 0.390576 | 5.3:+20346419 | None:intergenic |
| GTTAGGCGATGTACTAATTA+CGG | 0.396532 | 5.3:+20347107 | None:intergenic |
| CCCCTTTCAATTTCTCAAGA+AGG | 0.406895 | 5.3:-20348521 | MS.gene069147:intron |
| TTAGGCTGCAATTGGTACTT+TGG | 0.409947 | 5.3:-20346920 | MS.gene069147:intron |
| CACATTAGCACCGAAAGCTT+TGG | 0.413943 | 5.3:+20347131 | None:intergenic |
| AAATATAGGCATGAGCTTGC+GGG | 0.415703 | 5.3:-20347534 | MS.gene069147:intron |
| GATAAGCCTGGTTTACATAT+AGG | 0.416506 | 5.3:-20347198 | MS.gene069147:CDS |
| GCTGGTCCTCTCCTTTGTGC+TGG | 0.419633 | 5.3:-20347258 | MS.gene069147:CDS |
| AAATCGAAGAGGACTATATA+CGG | 0.426441 | 5.3:+20347230 | None:intergenic |
| CCATTTATCCACTTGTTCCT+GGG | 0.426610 | 5.3:-20347782 | MS.gene069147:intron |
| ATAGGTGTTGTTGGTCTTGG+TGG | 0.429450 | 5.3:-20347180 | MS.gene069147:CDS |
| TCCAAAGAAGGCCTTTGGTT+GGG | 0.430490 | 5.3:-20348571 | MS.gene069147:CDS |
| GAGCATCCAAAGAAGGCCTT+TGG | 0.441279 | 5.3:-20348576 | MS.gene069147:CDS |
| CGTGATGGAACCGTCACATA+TGG | 0.443014 | 5.3:-20347354 | MS.gene069147:CDS |
| ATGGTACCTGAATCTGCTTT+GGG | 0.444222 | 5.3:+20347028 | None:intergenic |
| TCCATATGGCGAAGAATGAA+TGG | 0.444643 | 5.3:-20347812 | MS.gene069147:CDS |
| TGGCAAATTTCACAGCCATA+TGG | 0.446571 | 5.3:+20347151 | None:intergenic |
| AATTCAAGAGGTATGTTGTC+AGG | 0.452593 | 5.3:+20347282 | None:intergenic |
| GACGGTTCCATCACGATACT+TGG | 0.454045 | 5.3:+20347362 | None:intergenic |
| AAAGTGGAGAAATTTAAAGT+TGG | 0.458834 | 5.3:-20347489 | MS.gene069147:CDS |
| AACCTTCTTGAGAAATTGAA+AGG | 0.464941 | 5.3:+20348519 | None:intergenic |
| ATTGGAACAACCTCGATATC+CGG | 0.466094 | 5.3:+20346527 | None:intergenic |
| GCTGCAATTGGTACTTTGGA+TGG | 0.470582 | 5.3:-20346916 | MS.gene069147:CDS |
| TTTAAAGTTGGAGACAAAGT+AGG | 0.474364 | 5.3:-20347477 | MS.gene069147:CDS |
| ATTGGTCTCTTGAAGTCTCA+TGG | 0.481856 | 5.3:-20346850 | MS.gene069147:CDS |
| GCTGTGTTGACATAATCAAT+TGG | 0.493044 | 5.3:+20346509 | None:intergenic |
| CCATATGGCGAAGAATGAAT+GGG | 0.494659 | 5.3:-20347811 | MS.gene069147:CDS |
| AGCAATGGAGCGTCTTGCTA+AGG | 0.496567 | 5.3:-20346489 | MS.gene069147:CDS |
| CATGGAAAGCTTATAATGCT+TGG | 0.504127 | 5.3:-20346832 | MS.gene069147:CDS |
| ATGTCACTCTGATCTCCATA+TGG | 0.507753 | 5.3:-20347826 | MS.gene069147:CDS |
| ATATTAGCTGGGAGTCAAGT+TGG | 0.515176 | 5.3:-20346605 | MS.gene069147:CDS |
| AGTAGTAGAGCATCCAAAGA+AGG | 0.516872 | 5.3:-20348583 | MS.gene069147:CDS |
| ACCTTCTTGAGAAATTGAAA+GGG | 0.517167 | 5.3:+20348520 | None:intergenic |
| ATCCAAAGAAGGCCTTTGGT+TGG | 0.536152 | 5.3:-20348572 | MS.gene069147:CDS |
| GAGAGGATGAACAGCTGAAA+CGG | 0.539263 | 5.3:+20346882 | None:intergenic |
| TACATCGCCTAACAAAGAAA+AGG | 0.540053 | 5.3:-20347097 | MS.gene069147:CDS |
| TGGGCAGCTAGAGATCCATC+TGG | 0.544091 | 5.3:-20348552 | MS.gene069147:CDS |
| TAAATATAGGCATGAGCTTG+CGG | 0.545464 | 5.3:-20347535 | MS.gene069147:intron |
| GTATATTCAGGAAGCTGCAA+AGG | 0.546317 | 5.3:+20346796 | None:intergenic |
| CTCCACTTTACTTCCCACTT+CGG | 0.546580 | 5.3:+20347503 | None:intergenic |
| TGGAGGTTACTCCGACTCAA+TGG | 0.547063 | 5.3:-20347334 | MS.gene069147:CDS |
| AACCGAAGTGGGAAGTAAAG+TGG | 0.553032 | 5.3:-20347505 | MS.gene069147:CDS |
| GACTTCAAGAGACCAATCAT+TGG | 0.565239 | 5.3:+20346856 | None:intergenic |
| GCAATGGAGCGTCTTGCTAA+GGG | 0.567348 | 5.3:-20346488 | MS.gene069147:CDS |
| GGCAGAACACAATGTAAAGC+CGG | 0.571570 | 5.3:-20346546 | MS.gene069147:CDS |
| ATCTCTAGCTGCCCAACCAA+AGG | 0.580130 | 5.3:+20348560 | None:intergenic |
| AAAACATACCCAGGAACAAG+TGG | 0.582294 | 5.3:+20347774 | None:intergenic |
| CTCGTCTGCAACCATTGAGT+CGG | 0.587984 | 5.3:+20347323 | None:intergenic |
| AGTTGGAGACAAAGTAGGTG+TGG | 0.589771 | 5.3:-20347472 | MS.gene069147:CDS |
| AGACCAATCATTGGTAAGAG+AGG | 0.590479 | 5.3:+20346865 | None:intergenic |
| AAGGAAGCAATAGAACACTT+AGG | 0.590978 | 5.3:-20347078 | MS.gene069147:CDS |
| AAAGGGGAGAGAACACCAGA+TGG | 0.597060 | 5.3:+20348537 | None:intergenic |
| TGATTATGTCAACACAGCAA+TGG | 0.603631 | 5.3:-20346504 | MS.gene069147:CDS |
| CAATGTAAAGCCGGATATCG+AGG | 0.604709 | 5.3:-20346537 | MS.gene069147:CDS |
| CCTTCTTGAGAAATTGAAAG+GGG | 0.611092 | 5.3:+20348521 | None:intergenic |
| GTTGGAGACAAAGTAGGTGT+GGG | 0.615995 | 5.3:-20347471 | MS.gene069147:CDS |
| TAGCTGGGAGTCAAGTTGGA+GGG | 0.620945 | 5.3:-20346601 | MS.gene069147:CDS |
| GCGGGTGTAGTAACCGAAGT+GGG | 0.625376 | 5.3:-20347516 | MS.gene069147:CDS |
| TTAGCTGGGAGTCAAGTTGG+AGG | 0.628577 | 5.3:-20346602 | MS.gene069147:CDS |
| TGCGGGTGTAGTAACCGAAG+TGG | 0.637661 | 5.3:-20347517 | MS.gene069147:CDS |
| ACAACACCTATATGTAAACC+AGG | 0.637734 | 5.3:+20347192 | None:intergenic |
| CCCAAATTTGTAGTCACATG+TGG | 0.638631 | 5.3:-20347387 | MS.gene069147:CDS |
| AGAGGACCAGCAAATTCAAG+AGG | 0.642176 | 5.3:+20347270 | None:intergenic |
| GATGGAACCGTCACATATGG+AGG | 0.644175 | 5.3:-20347351 | MS.gene069147:CDS |
| TGTGGTGCCAAGTATCGTGA+TGG | 0.659003 | 5.3:-20347369 | MS.gene069147:CDS |
| GGAGTAACCTCCATATGTGA+CGG | 0.672635 | 5.3:+20347344 | None:intergenic |
| CACATGTGACTACAAATTTG+GGG | 0.672670 | 5.3:+20347388 | None:intergenic |
| GTGACACCAGCACAAAGGAG+AGG | 0.674659 | 5.3:+20347252 | None:intergenic |
| CATATGGCGAAGAATGAATG+GGG | 0.702857 | 5.3:-20347810 | MS.gene069147:CDS |
| ATACGGTGACACCAGCACAA+AGG | 0.718821 | 5.3:+20347247 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAACAAAGATAATAAAA+AGG | + | chr5.3:20347287-20347306 | None:intergenic | 10.0% |
| !! | TTAATTTCATATTATTGATA+GGG | - | chr5.3:20348396-20348415 | MS.gene069147:intron | 10.0% |
| !!! | AATACTATTGATAATTTTTT+AGG | - | chr5.3:20348092-20348111 | MS.gene069147:intron | 10.0% |
| !! | CAAAATAAATAAGAATAGAT+CGG | - | chr5.3:20346741-20346760 | MS.gene069147:intron | 15.0% |
| !! | CATAGATCTAAATAATTTAA+AGG | + | chr5.3:20347091-20347110 | None:intergenic | 15.0% |
| !! | GTAATTGATGTAATAAATAT+AGG | - | chr5.3:20347482-20347501 | MS.gene069147:CDS | 15.0% |
| !! | GTTAATTTCATATTATTGAT+AGG | - | chr5.3:20348395-20348414 | MS.gene069147:intron | 15.0% |
| !!! | GTTTAATTTAGATGTAATTT+TGG | + | chr5.3:20346970-20346989 | None:intergenic | 15.0% |
| !! | AAAAGATTAAAACAAGGAAT+TGG | - | chr5.3:20346654-20346673 | MS.gene069147:intron | 20.0% |
| !! | ACTGATAAAAGATTAAAACA+AGG | - | chr5.3:20346648-20346667 | MS.gene069147:intron | 20.0% |
| !! | ATTATTTAGATCTATGTTTC+TGG | - | chr5.3:20347095-20347114 | MS.gene069147:CDS | 20.0% |
| !! | CAAATGAATTACATATTGTA+TGG | + | chr5.3:20348024-20348043 | None:intergenic | 20.0% |
| !! | GATACTAATTAATTCAACTT+TGG | - | chr5.3:20347117-20347136 | MS.gene069147:CDS | 20.0% |
| !! | TAATATTTCTTGAATGTGTT+TGG | - | chr5.3:20346716-20346735 | MS.gene069147:intron | 20.0% |
| !! | TTAGTTTAGTATTAGAGTTA+TGG | + | chr5.3:20346785-20346804 | None:intergenic | 20.0% |
| !!! | CGATCTATTCTTATTTATTT+TGG | + | chr5.3:20346743-20346762 | None:intergenic | 20.0% |
| !!! | TTGTTTTAATCTTTTATCAG+TGG | + | chr5.3:20346649-20346668 | None:intergenic | 20.0% |
| ! | ATAATTGAACCAAACTTCAT+TGG | - | chr5.3:20347060-20347079 | MS.gene069147:CDS | 25.0% |
| ! | ATATATATATTCCCTTGGAA+TGG | - | chr5.3:20348294-20348313 | MS.gene069147:intron | 25.0% |
| ! | ATTCCAAGGGAATATATATA+TGG | + | chr5.3:20348295-20348314 | None:intergenic | 25.0% |
| ! | CCTGAATATACTTTAATTCA+AGG | - | chr5.3:20348246-20348265 | MS.gene069147:intron | 25.0% |
| ! | CCTTGAATTAAAGTATATTC+AGG | + | chr5.3:20348249-20348268 | None:intergenic | 25.0% |
| ! | GAGTATTATATTTACAGACA+TGG | + | chr5.3:20347323-20347342 | None:intergenic | 25.0% |
| ! | GTGAGCATAAAATTTATACA+TGG | + | chr5.3:20348370-20348389 | None:intergenic | 25.0% |
| ! | TAAATAAGAATAGATCGGTT+CGG | - | chr5.3:20346746-20346765 | MS.gene069147:intron | 25.0% |
| ! | TTTATCAGTGGAAAAAGAAA+AGG | + | chr5.3:20346637-20346656 | None:intergenic | 25.0% |
| ! | TTTCCATATATATATTCCCT+TGG | - | chr5.3:20348289-20348308 | MS.gene069147:intron | 25.0% |
| !! | AAAGTGGAGAAATTTAAAGT+TGG | - | chr5.3:20347541-20347560 | MS.gene069147:intron | 25.0% |
| !! | AAGAATGTATGATGATAATG+CGG | + | chr5.3:20346993-20347012 | None:intergenic | 25.0% |
| !! | GGCAAAAAATAATTCTAGTT+TGG | + | chr5.3:20347038-20347057 | None:intergenic | 25.0% |
| !! | GTCACTAATTTTTAATGATG+TGG | + | chr5.3:20346809-20346828 | None:intergenic | 25.0% |
| !!! | AACTAACAGATTTTAAGTAG+AGG | + | chr5.3:20346885-20346904 | None:intergenic | 25.0% |
| !!! | AATTCTAGTTTGGTTCATTT+TGG | + | chr5.3:20347028-20347047 | None:intergenic | 25.0% |
| !!! | ATAATTTTTTAGGCTGCAAT+TGG | - | chr5.3:20348102-20348121 | MS.gene069147:intron | 25.0% |
| !!! | TATCGATTTGTGATTGATAT+TGG | - | chr5.3:20348575-20348594 | MS.gene069147:CDS | 25.0% |
| !!! | TCAAGAAATGATTGATTTTG+CGG | - | chr5.3:20348463-20348482 | MS.gene069147:intron | 25.0% |
| AAATCGAAGAGGACTATATA+CGG | + | chr5.3:20347803-20347822 | None:intergenic | 30.0% | |
| AACCTTCTTGAGAAATTGAA+AGG | + | chr5.3:20346514-20346533 | None:intergenic | 30.0% | |
| AATTTCCTTGAAACTAGTAG+TGG | + | chr5.3:20346604-20346623 | None:intergenic | 30.0% | |
| ACCTTCTTGAGAAATTGAAA+GGG | + | chr5.3:20346513-20346532 | None:intergenic | 30.0% | |
| ATAGGGAGAAAAATATTAGC+TGG | - | chr5.3:20348413-20348432 | MS.gene069147:intron | 30.0% | |
| ATTTCCTTGAAACTAGTAGT+GGG | + | chr5.3:20346603-20346622 | None:intergenic | 30.0% | |
| CAAGATTGTCATTACAATCT+TGG | + | chr5.3:20347612-20347631 | None:intergenic | 30.0% | |
| GATTAAAACAAGGAATTGGA+TGG | - | chr5.3:20346658-20346677 | MS.gene069147:intron | 30.0% | |
| TAGGGAGAAAAATATTAGCT+GGG | - | chr5.3:20348414-20348433 | MS.gene069147:intron | 30.0% | |
| TGAAAAAGATGTAGCATTCA+AGG | - | chr5.3:20347165-20347184 | MS.gene069147:CDS | 30.0% | |
| ! | AACTTTTTGACACACATCAA+AGG | - | chr5.3:20346840-20346859 | MS.gene069147:CDS | 30.0% |
| ! | AGAATGTATGATGATAATGC+GGG | + | chr5.3:20346992-20347011 | None:intergenic | 30.0% |
| ! | AGCAAAAGTATATGCTACAT+TGG | + | chr5.3:20347462-20347481 | None:intergenic | 30.0% |
| ! | ATTGCTTCCTTTTCTTTGTT+AGG | + | chr5.3:20347943-20347962 | None:intergenic | 30.0% |
| ! | TGAAGTTTGGTTCAATTATG+AGG | + | chr5.3:20347059-20347078 | None:intergenic | 30.0% |
| ! | TTTAAAGTTGGAGACAAAGT+AGG | - | chr5.3:20347553-20347572 | MS.gene069147:intron | 30.0% |
| !! | CATTCAAGGTTTTGTATTGT+GGG | - | chr5.3:20347179-20347198 | MS.gene069147:CDS | 30.0% |
| !! | TTTGGTGCACCAAAATTTTA+GGG | - | chr5.3:20347135-20347154 | MS.gene069147:CDS | 30.0% |
| !!! | TATAGTCCTCTTCGATTTTT+TGG | - | chr5.3:20347805-20347824 | MS.gene069147:CDS | 30.0% |
| AACATACCTCTTGAATTTGC+TGG | - | chr5.3:20347754-20347773 | MS.gene069147:intron | 35.0% | |
| AAGGAAGCAATAGAACACTT+AGG | - | chr5.3:20347952-20347971 | MS.gene069147:intron | 35.0% | |
| ACAACACCTATATGTAAACC+AGG | + | chr5.3:20347841-20347860 | None:intergenic | 35.0% | |
| ACCACATGTGACTACAAATT+TGG | + | chr5.3:20347647-20347666 | None:intergenic | 35.0% | |
| CACATGTGACTACAAATTTG+GGG | + | chr5.3:20347645-20347664 | None:intergenic | 35.0% | |
| CATGGAAAGCTTATAATGCT+TGG | - | chr5.3:20348198-20348217 | MS.gene069147:intron | 35.0% | |
| CCACATGTGACTACAAATTT+GGG | + | chr5.3:20347646-20347665 | None:intergenic | 35.0% | |
| CCTTCTTGAGAAATTGAAAG+GGG | + | chr5.3:20346512-20346531 | None:intergenic | 35.0% | |
| GATAAGCCTGGTTTACATAT+AGG | - | chr5.3:20347832-20347851 | MS.gene069147:CDS | 35.0% | |
| GTGAAATTTGCCAAAGCTTT+CGG | - | chr5.3:20347889-20347908 | MS.gene069147:intron | 35.0% | |
| GTTAGGCGATGTACTAATTA+CGG | + | chr5.3:20347926-20347945 | None:intergenic | 35.0% | |
| TAAATATAGGCATGAGCTTG+CGG | - | chr5.3:20347495-20347514 | MS.gene069147:CDS | 35.0% | |
| TACATCGCCTAACAAAGAAA+AGG | - | chr5.3:20347933-20347952 | MS.gene069147:intron | 35.0% | |
| TGATTATGTCAACACAGCAA+TGG | - | chr5.3:20348526-20348545 | MS.gene069147:CDS | 35.0% | |
| TTTCCTTGAAACTAGTAGTG+GGG | + | chr5.3:20346602-20346621 | None:intergenic | 35.0% | |
| ! | AATTCAAGAGGTATGTTGTC+AGG | + | chr5.3:20347751-20347770 | None:intergenic | 35.0% |
| ! | CACCTGTTTCCCTAAAATTT+TGG | + | chr5.3:20347147-20347166 | None:intergenic | 35.0% |
| ! | GCTGTGTTGACATAATCAAT+TGG | + | chr5.3:20348524-20348543 | None:intergenic | 35.0% |
| ! | GGTTTACATATAGGTGTTGT+TGG | - | chr5.3:20347841-20347860 | MS.gene069147:CDS | 35.0% |
| !! | CACCAAAATTTTAGGGAAAC+AGG | - | chr5.3:20347142-20347161 | MS.gene069147:CDS | 35.0% |
| !! | CTTTGGTGCACCAAAATTTT+AGG | - | chr5.3:20347134-20347153 | MS.gene069147:CDS | 35.0% |
| !! | GCATTCAAGGTTTTGTATTG+TGG | - | chr5.3:20347178-20347197 | MS.gene069147:CDS | 35.0% |
| AAAACATACCCAGGAACAAG+TGG | + | chr5.3:20347259-20347278 | None:intergenic | 40.0% | |
| AAATATAGGCATGAGCTTGC+GGG | - | chr5.3:20347496-20347515 | MS.gene069147:CDS | 40.0% | |
| AAGGAGTTCAAAACATACCC+AGG | + | chr5.3:20347268-20347287 | None:intergenic | 40.0% | |
| AGACCAATCATTGGTAAGAG+AGG | + | chr5.3:20348168-20348187 | None:intergenic | 40.0% | |
| ATATTAGCTGGGAGTCAAGT+TGG | - | chr5.3:20348425-20348444 | MS.gene069147:intron | 40.0% | |
| ATATTCCCTTGGAATGGTTC+AGG | - | chr5.3:20348300-20348319 | MS.gene069147:intron | 40.0% | |
| ATGGTACCTGAATCTGCTTT+GGG | + | chr5.3:20348005-20348024 | None:intergenic | 40.0% | |
| ATGTCACTCTGATCTCCATA+TGG | - | chr5.3:20347204-20347223 | MS.gene069147:CDS | 40.0% | |
| ATTGGAACAACCTCGATATC+CGG | + | chr5.3:20348506-20348525 | None:intergenic | 40.0% | |
| CATATGGCGAAGAATGAATG+GGG | - | chr5.3:20347220-20347239 | MS.gene069147:CDS | 40.0% | |
| CATCCTCTCTTACCAATGAT+TGG | - | chr5.3:20348162-20348181 | MS.gene069147:intron | 40.0% | |
| CCATATGGCGAAGAATGAAT+GGG | - | chr5.3:20347219-20347238 | MS.gene069147:CDS | 40.0% | |
| CCATTTATCCACTTGTTCCT+GGG | - | chr5.3:20347248-20347267 | MS.gene069147:CDS | 40.0% | |
| CCCAAATTTGTAGTCACATG+TGG | - | chr5.3:20347643-20347662 | MS.gene069147:intron | 40.0% | |
| CCCCTTTCAATTTCTCAAGA+AGG | - | chr5.3:20346509-20346528 | MS.gene069147:CDS | 40.0% | |
| GACTTCAAGAGACCAATCAT+TGG | + | chr5.3:20348177-20348196 | None:intergenic | 40.0% | |
| GTATATTCAGGAAGCTGCAA+AGG | + | chr5.3:20348237-20348256 | None:intergenic | 40.0% | |
| TATGGTACCTGAATCTGCTT+TGG | + | chr5.3:20348006-20348025 | None:intergenic | 40.0% | |
| TCCATATGGCGAAGAATGAA+TGG | - | chr5.3:20347218-20347237 | MS.gene069147:CDS | 40.0% | |
| TCCATTTATCCACTTGTTCC+TGG | - | chr5.3:20347247-20347266 | MS.gene069147:CDS | 40.0% | |
| TCGAGTCCAAAAAATCGAAG+AGG | + | chr5.3:20347814-20347833 | None:intergenic | 40.0% | |
| TGGCAAATTTCACAGCCATA+TGG | + | chr5.3:20347882-20347901 | None:intergenic | 40.0% | |
| TTAGGCTGCAATTGGTACTT+TGG | - | chr5.3:20348110-20348129 | MS.gene069147:intron | 40.0% | |
| TTCCTTGAAACTAGTAGTGG+GGG | + | chr5.3:20346601-20346620 | None:intergenic | 40.0% | |
| TTTCTCCTGAACCATTCCAA+GGG | + | chr5.3:20348308-20348327 | None:intergenic | 40.0% | |
| ! | AGTAGTAGAGCATCCAAAGA+AGG | - | chr5.3:20346447-20346466 | MS.gene069147:CDS | 40.0% |
| ! | ATTGGTCTCTTGAAGTCTCA+TGG | - | chr5.3:20348180-20348199 | MS.gene069147:intron | 40.0% |
| ! | TTTTCTCCTGAACCATTCCA+AGG | + | chr5.3:20348309-20348328 | None:intergenic | 40.0% |
| !! | AAGGTGTTGCCAATGAAGTT+TGG | + | chr5.3:20347072-20347091 | None:intergenic | 40.0% |
| !! | AAGTAGAGGCATCAAGATGT+TGG | + | chr5.3:20346871-20346890 | None:intergenic | 40.0% |
| !! | CATATAGGTGTTGTTGGTCT+TGG | - | chr5.3:20347847-20347866 | MS.gene069147:CDS | 40.0% |
| !!! | TTTTTTGGACTCGATAAGCC+TGG | - | chr5.3:20347820-20347839 | MS.gene069147:CDS | 40.0% |
| AACCGAAGTGGGAAGTAAAG+TGG | - | chr5.3:20347525-20347544 | MS.gene069147:CDS | 45.0% | |
| AGAGGACCAGCAAATTCAAG+AGG | + | chr5.3:20347763-20347782 | None:intergenic | 45.0% | |
| AGTTGGAGACAAAGTAGGTG+TGG | - | chr5.3:20347558-20347577 | MS.gene069147:intron | 45.0% | |
| ATCCAAAGAAGGCCTTTGGT+TGG | - | chr5.3:20346458-20346477 | MS.gene069147:CDS | 45.0% | |
| CAATGTAAAGCCGGATATCG+AGG | - | chr5.3:20348493-20348512 | MS.gene069147:intron | 45.0% | |
| CCCAGGAACAAGTGGATAAA+TGG | + | chr5.3:20347251-20347270 | None:intergenic | 45.0% | |
| CCCATTCATTCTTCGCCATA+TGG | + | chr5.3:20347222-20347241 | None:intergenic | 45.0% | |
| CTCCACTTTACTTCCCACTT+CGG | + | chr5.3:20347530-20347549 | None:intergenic | 45.0% | |
| GAGAGGATGAACAGCTGAAA+CGG | + | chr5.3:20348151-20348170 | None:intergenic | 45.0% | |
| GCTGCAATTGGTACTTTGGA+TGG | - | chr5.3:20348114-20348133 | MS.gene069147:intron | 45.0% | |
| GGAGTAACCTCCATATGTGA+CGG | + | chr5.3:20347689-20347708 | None:intergenic | 45.0% | |
| GGCAGAACACAATGTAAAGC+CGG | - | chr5.3:20348484-20348503 | MS.gene069147:intron | 45.0% | |
| GTTGGAGACAAAGTAGGTGT+GGG | - | chr5.3:20347559-20347578 | MS.gene069147:intron | 45.0% | |
| TAGTGACCCAAAGCAGATTC+AGG | - | chr5.3:20347996-20348015 | MS.gene069147:intron | 45.0% | |
| TCCAAAGAAGGCCTTTGGTT+GGG | - | chr5.3:20346459-20346478 | MS.gene069147:CDS | 45.0% | |
| ! | CACATTAGCACCGAAAGCTT+TGG | + | chr5.3:20347902-20347921 | None:intergenic | 45.0% |
| ! | TTCCCCCACTACTAGTTTCA+AGG | - | chr5.3:20346596-20346615 | MS.gene069147:CDS | 45.0% |
| !! | ATAGGTGTTGTTGGTCTTGG+TGG | - | chr5.3:20347850-20347869 | MS.gene069147:CDS | 45.0% |
| !! | GAGTCAAGTTGGAGGGTTAA+AGG | - | chr5.3:20348436-20348455 | MS.gene069147:intron | 45.0% |
| !! | TAATTAAAATATAAATGAAA+GGG | - | chr5.3:20347423-20347442 | MS.gene069147:CDS | 5.0% |
| !! | TTAATTAAAATATAAATGAA+AGG | - | chr5.3:20347422-20347441 | MS.gene069147:CDS | 5.0% |
| AAAGGGGAGAGAACACCAGA+TGG | + | chr5.3:20346496-20346515 | None:intergenic | 50.0% | |
| ATACGGTGACACCAGCACAA+AGG | + | chr5.3:20347786-20347805 | None:intergenic | 50.0% | |
| ATCTCTAGCTGCCCAACCAA+AGG | + | chr5.3:20346473-20346492 | None:intergenic | 50.0% | |
| CTCGTCTGCAACCATTGAGT+CGG | + | chr5.3:20347710-20347729 | None:intergenic | 50.0% | |
| GACGGTTCCATCACGATACT+TGG | + | chr5.3:20347671-20347690 | None:intergenic | 50.0% | |
| GAGCATCCAAAGAAGGCCTT+TGG | - | chr5.3:20346454-20346473 | MS.gene069147:CDS | 50.0% | |
| GATGGAACCGTCACATATGG+AGG | - | chr5.3:20347679-20347698 | MS.gene069147:intron | 50.0% | |
| TGGAGGTTACTCCGACTCAA+TGG | - | chr5.3:20347696-20347715 | MS.gene069147:intron | 50.0% | |
| ! | AGCAATGGAGCGTCTTGCTA+AGG | - | chr5.3:20348541-20348560 | MS.gene069147:CDS | 50.0% |
| ! | CGTGATGGAACCGTCACATA+TGG | - | chr5.3:20347676-20347695 | MS.gene069147:intron | 50.0% |
| ! | GCAATGGAGCGTCTTGCTAA+GGG | - | chr5.3:20348542-20348561 | MS.gene069147:CDS | 50.0% |
| ! | TGTGGTGCCAAGTATCGTGA+TGG | - | chr5.3:20347661-20347680 | MS.gene069147:intron | 50.0% |
| !! | GTTGTTGGTCTTGGTGGACT+TGG | - | chr5.3:20347856-20347875 | MS.gene069147:CDS | 50.0% |
| !! | TAGCTGGGAGTCAAGTTGGA+GGG | - | chr5.3:20348429-20348448 | MS.gene069147:intron | 50.0% |
| !! | TCTTGGTGGACTTGGCCATA+TGG | - | chr5.3:20347864-20347883 | MS.gene069147:CDS | 50.0% |
| !! | TTAGCTGGGAGTCAAGTTGG+AGG | - | chr5.3:20348428-20348447 | MS.gene069147:intron | 50.0% |
| GCCCAACCAAAGGCCTTCTT+TGG | + | chr5.3:20346463-20346482 | None:intergenic | 55.0% | |
| GCGGGTGTAGTAACCGAAGT+GGG | - | chr5.3:20347514-20347533 | MS.gene069147:CDS | 55.0% | |
| GTGACACCAGCACAAAGGAG+AGG | + | chr5.3:20347781-20347800 | None:intergenic | 55.0% | |
| TGCGGGTGTAGTAACCGAAG+TGG | - | chr5.3:20347513-20347532 | MS.gene069147:CDS | 55.0% | |
| TGGGCAGCTAGAGATCCATC+TGG | - | chr5.3:20346478-20346497 | MS.gene069147:CDS | 55.0% | |
| GCTGGTCCTCTCCTTTGTGC+TGG | - | chr5.3:20347772-20347791 | MS.gene069147:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 20346430 | 20348622 | 20346430 | ID=MS.gene069147 |
| chr5.3 | mRNA | 20346430 | 20348622 | 20346430 | ID=MS.gene069147.t1;Parent=MS.gene069147 |
| chr5.3 | exon | 20348522 | 20348622 | 20348522 | ID=MS.gene069147.t1.exon1;Parent=MS.gene069147.t1 |
| chr5.3 | CDS | 20348522 | 20348622 | 20348522 | ID=cds.MS.gene069147.t1;Parent=MS.gene069147.t1 |
| chr5.3 | exon | 20347783 | 20347896 | 20347783 | ID=MS.gene069147.t1.exon2;Parent=MS.gene069147.t1 |
| chr5.3 | CDS | 20347783 | 20347896 | 20347783 | ID=cds.MS.gene069147.t1;Parent=MS.gene069147.t1 |
| chr5.3 | exon | 20347035 | 20347548 | 20347035 | ID=MS.gene069147.t1.exon3;Parent=MS.gene069147.t1 |
| chr5.3 | CDS | 20347035 | 20347548 | 20347035 | ID=cds.MS.gene069147.t1;Parent=MS.gene069147.t1 |
| chr5.3 | exon | 20346785 | 20346938 | 20346785 | ID=MS.gene069147.t1.exon4;Parent=MS.gene069147.t1 |
| chr5.3 | CDS | 20346785 | 20346938 | 20346785 | ID=cds.MS.gene069147.t1;Parent=MS.gene069147.t1 |
| chr5.3 | exon | 20346430 | 20346635 | 20346430 | ID=MS.gene069147.t1.exon5;Parent=MS.gene069147.t1 |
| chr5.3 | CDS | 20346430 | 20346635 | 20346430 | ID=cds.MS.gene069147.t1;Parent=MS.gene069147.t1 |
| Gene Sequence |
| Protein sequence |
