AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036724

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036724.t1 MTR_4g115300 96.122 361 14 0 1 361 1 361 0.0 723
MS.gene036724.t1 MTR_5g031230 83.102 361 61 0 1 361 1 361 0.0 618
MS.gene036724.t1 MTR_5g031250 81.994 361 65 0 1 361 1 361 0.0 599
MS.gene036724.t1 MTR_5g031210 81.440 361 67 0 1 361 1 361 0.0 592
MS.gene036724.t1 MTR_5g031310 80.791 354 68 0 7 360 8 361 0.0 587
MS.gene036724.t1 MTR_5g031305 79.944 354 71 0 7 360 8 361 0.0 582
MS.gene036724.t1 MTR_5g031390 79.224 361 75 0 1 361 1 361 0.0 577
MS.gene036724.t1 MTR_5g031300 77.684 354 79 0 8 361 9 362 0.0 573
MS.gene036724.t1 MTR_5g031360 76.638 351 82 0 10 360 12 362 0.0 558
MS.gene036724.t1 MTR_5g031190 74.792 361 91 0 1 361 1 361 0.0 553
MS.gene036724.t1 MTR_8g068190 76.111 360 86 0 1 360 1 360 0.0 534
MS.gene036724.t1 MTR_5g031180 75.346 361 89 0 1 361 1 361 0.0 528
MS.gene036724.t1 MTR_8g092630 64.327 342 121 1 16 357 73 413 2.37e-153 438
MS.gene036724.t1 MTR_5g031430 63.188 345 127 0 14 358 14 358 5.14e-148 422
MS.gene036724.t1 MTR_5g031250 83.402 241 40 0 1 241 1 241 8.29e-144 408
MS.gene036724.t1 MTR_1g025950 56.897 348 149 1 9 355 8 355 9.27e-133 384
MS.gene036724.t1 MTR_1g107425 50.708 353 172 1 1 353 1 351 3.16e-119 349
MS.gene036724.t1 MTR_2g009810 53.468 346 159 2 14 358 62 406 5.09e-116 343
MS.gene036724.t1 MTR_1g107425 52.448 286 134 1 1 286 1 284 3.89e-95 286
MS.gene036724.t1 MTR_2g009820 49.794 243 97 2 130 358 23 254 2.52e-63 202
MS.gene036724.t1 MTR_5g031290 79.825 114 23 0 247 360 80 193 7.62e-57 184
MS.gene036724.t1 MTR_5g031290 78.750 80 16 1 1 79 1 80 2.56e-40 141
MS.gene036724.t1 MTR_8g095220 26.970 330 211 8 10 312 51 377 8.43e-25 104
MS.gene036724.t1 MTR_8g095220 27.953 254 160 5 10 242 51 302 6.74e-23 97.8
MS.gene036724.t1 MTR_0001s0660 26.453 344 220 12 38 353 35 373 3.80e-19 88.6
MS.gene036724.t1 MTR_3g089977 25.143 350 221 11 39 354 37 379 2.56e-16 79.7
MS.gene036724.t1 MTR_3g089940 24.484 339 218 9 39 344 37 370 1.01e-15 78.2
MS.gene036724.t1 MTR_3g089940 24.484 339 218 9 39 344 37 370 1.25e-15 77.8
MS.gene036724.t1 MTR_7g068320 26.923 338 209 13 39 341 48 382 3.02e-15 76.6
MS.gene036724.t1 MTR_3g089970 24.189 339 219 9 39 344 38 371 1.25e-14 74.7
MS.gene036724.t1 MTR_3g089940 24.756 307 201 7 39 319 37 339 2.96e-14 73.6
MS.gene036724.t1 MTR_3g089940 24.756 307 201 7 39 319 37 339 3.99e-14 73.2
MS.gene036724.t1 MTR_7g099040 27.900 319 191 13 39 327 38 347 5.79e-14 72.8
MS.gene036724.t1 MTR_3g099460 27.419 310 193 10 39 319 37 343 4.88e-13 70.1
MS.gene036724.t1 MTR_3g099460 27.419 310 193 10 39 319 44 350 4.93e-13 70.1
MS.gene036724.t1 MTR_5g045710 23.867 331 217 10 38 338 35 360 4.97e-13 70.1
MS.gene036724.t1 MTR_1g069430 25.959 339 211 13 39 349 36 362 1.01e-12 68.9
MS.gene036724.t1 MTR_5g031380 65.000 40 14 0 81 120 20 59 4.70e-12 62.4
MS.gene036724.t1 MTR_7g068330 26.923 338 208 15 39 341 41 374 9.84e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036724.t1 AT4G37980 68.678 348 109 0 13 360 9 356 7.72e-166 467
MS.gene036724.t1 AT4G37970 62.817 355 132 0 6 360 7 361 2.38e-164 464
MS.gene036724.t1 AT4G37990 68.678 348 109 0 13 360 9 356 1.12e-162 459
MS.gene036724.t1 AT4G39330 61.003 359 140 0 1 359 1 359 7.68e-162 457
MS.gene036724.t1 AT2G21730 60.907 353 136 2 11 361 5 357 8.97e-154 437
MS.gene036724.t1 AT2G21890 61.080 352 136 1 11 361 5 356 1.78e-153 437
MS.gene036724.t1 AT4G39330 60.465 301 119 0 1 301 1 301 1.18e-129 374
MS.gene036724.t1 AT4G37980 68.421 285 90 0 13 297 9 293 8.23e-129 371
MS.gene036724.t1 AT4G37970 61.301 292 113 0 6 297 7 298 4.78e-127 367
MS.gene036724.t1 AT1G72680 52.299 348 165 1 11 358 9 355 4.07e-117 343
MS.gene036724.t1 AT3G19450 50.291 344 171 0 13 356 11 354 3.41e-109 324
MS.gene036724.t1 AT4G34230 52.507 339 161 0 15 353 12 350 1.53e-106 317
MS.gene036724.t1 AT4G34230 52.212 339 162 0 15 353 12 350 1.14e-105 315
MS.gene036724.t1 AT4G37970 61.088 239 93 0 6 244 7 245 3.39e-101 300
MS.gene036724.t1 AT4G37970 61.181 237 92 0 6 242 7 243 1.13e-100 298
MS.gene036724.t1 AT5G63620 29.181 281 167 9 25 278 70 345 8.21e-26 107
MS.gene036724.t1 AT5G63620 29.181 281 167 9 25 278 70 345 9.15e-26 107
MS.gene036724.t1 AT5G63620 30.000 240 141 8 25 242 70 304 6.87e-25 103
MS.gene036724.t1 AT1G64710 27.381 336 207 12 39 340 13 345 2.59e-19 88.6
MS.gene036724.t1 AT1G22430 28.146 302 186 10 39 312 42 340 2.76e-19 88.6
MS.gene036724.t1 AT1G22430 28.146 302 186 10 39 312 42 340 2.76e-19 88.6
MS.gene036724.t1 AT1G64710 27.381 336 207 12 39 340 36 368 2.87e-19 88.6
MS.gene036724.t1 AT1G32780 28.415 366 207 16 39 358 37 393 5.43e-17 82.0
MS.gene036724.t1 AT5G43940 25.974 308 196 9 39 319 36 338 1.33e-16 80.9
MS.gene036724.t1 AT5G43940 25.974 308 196 9 39 319 48 350 1.41e-16 80.9
MS.gene036724.t1 AT4G22110 27.483 302 188 11 39 312 43 341 3.76e-15 76.6
MS.gene036724.t1 AT4G22110 27.483 302 188 11 39 312 43 341 3.76e-15 76.6
MS.gene036724.t1 AT1G77120 22.414 348 239 8 36 354 33 378 8.44e-15 75.5
MS.gene036724.t1 AT1G22430 29.000 200 123 5 39 221 42 239 8.89e-15 74.7
MS.gene036724.t1 AT1G22430 29.000 200 123 5 39 221 42 239 1.18e-14 73.9
MS.gene036724.t1 AT1G22430 29.000 200 123 5 39 221 42 239 1.18e-14 73.9
MS.gene036724.t1 AT1G22440 26.646 319 183 13 39 319 40 345 3.04e-14 73.6
MS.gene036724.t1 AT4G22110 28.500 200 124 5 39 221 43 240 1.17e-12 68.2
MS.gene036724.t1 AT5G42250 23.701 308 206 8 39 319 45 350 6.03e-12 66.6

Find 89 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAGTCCTCTTCGATATTT+TGG 0.131767 8.2:+13271906 MS.gene036724:CDS
CCCCGTCTTTACTTTACTTT+CGG 0.214131 8.2:+13272336 MS.gene036724:CDS
GGTAGGCTTTACATTGTATT+TGG 0.226837 8.2:-13272673 None:intergenic
CCCGTCTTTACTTTACTTTC+GGG 0.233045 8.2:+13272337 MS.gene036724:CDS
GTTAAGTTTGCTAAAGCTTT+TGG 0.264666 8.2:+13271990 MS.gene036724:CDS
CATCCTCTCTCACCTCTAAT+TGG 0.269489 8.2:+13272253 MS.gene036724:CDS
ATAGTAGCTGGAAGTAATAT+TGG 0.310483 8.2:+13272612 MS.gene036724:CDS
GTTGTTGGTCTTGGTGGGCT+TGG 0.312818 8.2:+13271957 MS.gene036724:CDS
TTTATACTTGCATCTTATCT+TGG 0.330447 8.2:-13272103 None:intergenic
AAAGTAGAAAAGTTTAAAGT+TGG 0.357138 8.2:+13271642 MS.gene036724:CDS
TCCACCTATCCACTAGTTCC+TGG 0.377216 8.2:+13271484 MS.gene036724:CDS
GCCCAACCAAAGGCCACATT+TGG 0.377376 8.2:-13270941 None:intergenic
ACATTTGGATGCTCAAATTC+AGG 0.378005 8.2:-13270926 None:intergenic
AAAGGAAGCAAGAGAACTCT+TGG 0.393117 8.2:+13272052 MS.gene036724:CDS
TGTTGGTATAGTGACAAAAC+TGG 0.395186 8.2:+13271614 MS.gene036724:CDS
GACTTCAGTAATCCAATTAG+AGG 0.398578 8.2:-13272265 None:intergenic
TCCAAATGTGGCCTTTGGTT+GGG 0.404435 8.2:+13270940 MS.gene036724:CDS
TTGTGTAGAATTTAAGAGCT+TGG 0.407998 8.2:-13272798 None:intergenic
TCTTGGTGGGCTTGGTCACA+TGG 0.411120 8.2:+13271965 MS.gene036724:CDS
CATATAGGTGTTGTTGGTCT+TGG 0.413940 8.2:+13271948 MS.gene036724:CDS
CCCCTTTCAATTTCTCCAGA+AGG 0.415467 8.2:+13270990 MS.gene036724:CDS
ACTTGTAATGGTTGGTGCTC+CGG 0.423564 8.2:+13272297 MS.gene036724:CDS
TCCACATGATTAAGAATGAA+TGG 0.429006 8.2:+13271455 MS.gene036724:CDS
ATAGGTGTTGTTGGTCTTGG+TGG 0.441219 8.2:+13271951 MS.gene036724:CDS
GCTGCTCCTCTTCTTTGTGC+TGG 0.441300 8.2:+13271873 MS.gene036724:CDS
GAGCATCCAAATGTGGCCTT+TGG 0.445115 8.2:+13270935 MS.gene036724:CDS
CCACATGATTAAGAATGAAT+GGG 0.451390 8.2:+13271456 MS.gene036724:CDS
TATCGATTTGTGATTGACAT+TGG 0.459329 8.2:+13272762 MS.gene036724:CDS
GGTATGCATATAGGTGTTGT+TGG 0.468283 8.2:+13271942 MS.gene036724:CDS
AAGTAATATTGGAGGGATGA+AGG 0.472105 8.2:+13272623 MS.gene036724:CDS
ATCCAAATGTGGCCTTTGGT+TGG 0.472346 8.2:+13270939 MS.gene036724:CDS
GCTTCAAGTGGTAAACCATC+AGG 0.481602 8.2:-13271849 None:intergenic
ACCTTCTGGAGAAATTGAAA+GGG 0.484740 8.2:-13270991 None:intergenic
GCAGGGAGAAAGATAGTAGC+TGG 0.485268 8.2:+13272600 MS.gene036724:intron
TACATCACCTAACAAAGAAA+AGG 0.487305 8.2:+13272034 MS.gene036724:CDS
AAATACAGACATGAGATTGT+TGG 0.489466 8.2:+13271597 MS.gene036724:intron
TACCATTGAAGTCATCCCTA+TGG 0.491456 8.2:+13272692 MS.gene036724:CDS
AACCTTCTGGAGAAATTGAA+AGG 0.496825 8.2:-13270992 None:intergenic
CGCTTTACAGCCACGTGCAG+TGG 0.500919 8.2:+13271747 MS.gene036724:CDS
GGTTGTAGACGAGCACTTTG+CGG 0.501852 8.2:+13271818 MS.gene036724:CDS
CCCGAAAGTAAAGTAAAGAC+GGG 0.510473 8.2:-13272337 None:intergenic
GACAAGCCTGGTATGCATAT+AGG 0.511811 8.2:+13271933 MS.gene036724:CDS
TAGGTGTTGTTGGTCTTGGT+GGG 0.518566 8.2:+13271952 MS.gene036724:CDS
TTTGCGGTTCACATTCCTGA+TGG 0.526271 8.2:+13271834 MS.gene036724:CDS
GTTTAAAGTTGGAGACAAAG+TGG 0.533040 8.2:+13271653 MS.gene036724:CDS
CGTGATGGCACCACCACATA+CGG 0.535685 8.2:+13271777 MS.gene036724:CDS
GTTGGAGACAAAGTGGGTGT+TGG 0.538424 8.2:+13271660 MS.gene036724:CDS
TTTAAAGTTGGAGACAAAGT+GGG 0.540239 8.2:+13271654 MS.gene036724:CDS
GTCTCTTGCTGCCCAACCAA+AGG 0.541338 8.2:-13270951 None:intergenic
ATCCATAGGGATGACTTCAA+TGG 0.541653 8.2:-13272694 None:intergenic
ATTGGATTACTGAAGTCTCA+TGG 0.542612 8.2:+13272271 MS.gene036724:CDS
GCAGTGTTCACATAATCCAT+AGG 0.547554 8.2:-13272708 None:intergenic
AAGGAAGCAAGAGAACTCTT+GGG 0.547722 8.2:+13272053 MS.gene036724:CDS
GGGAGCTCGAGAGGCTTCGC+CGG 0.548606 8.2:-13272316 None:intergenic
CAGTGTTCACATAATCCATA+GGG 0.548716 8.2:-13272707 None:intergenic
CCACCTATCCACTAGTTCCT+GGG 0.558391 8.2:+13271485 MS.gene036724:CDS
ACGATATTTGCCACTGCACG+TGG 0.564598 8.2:-13271757 None:intergenic
CCCAGGAACTAGTGGATAGG+TGG 0.565658 8.2:-13271485 None:intergenic
CGGAGGTTACTCTGACTCAA+TGG 0.566334 8.2:+13271797 MS.gene036724:CDS
ACCCGAAAGTAAAGTAAAGA+CGG 0.569687 8.2:-13272338 None:intergenic
CCCATTCATTCTTAATCATG+TGG 0.570774 8.2:-13271456 None:intergenic
TGGGCAGCAAGAGACCAATC+TGG 0.572795 8.2:+13270959 MS.gene036724:CDS
GTAAAGACGGGGAGCTCGAG+AGG 0.576499 8.2:-13272325 None:intergenic
GTCTCATGGAAAACTTGTAA+TGG 0.588488 8.2:+13272285 MS.gene036724:CDS
GTAGCTGGAAGTAATATTGG+AGG 0.593394 8.2:+13272615 MS.gene036724:CDS
AAGGGGAGAGAAGACCAGAT+TGG 0.593974 8.2:-13270973 None:intergenic
AAAGCATACCCAGGAACTAG+TGG 0.598271 8.2:-13271493 None:intergenic
AATCCAATTAGAGGTGAGAG+AGG 0.598290 8.2:-13272256 None:intergenic
ATAGGGATGACTTCAATGGT+AGG 0.600678 8.2:-13272690 None:intergenic
GTCAGAGTAACCTCCGTATG+TGG 0.602930 8.2:-13271790 None:intergenic
GTGATACCAGCACAAAGAAG+AGG 0.605032 8.2:-13271879 None:intergenic
ACAACACCTATATGCATACC+AGG 0.605327 8.2:-13271939 None:intergenic
CATGGAAAACTTGTAATGGT+TGG 0.608863 8.2:+13272289 MS.gene036724:CDS
GCTTCAATGGATACATTAGA+CGG 0.612870 8.2:+13272205 MS.gene036724:CDS
GGATTATGTGAACACTGCAA+TGG 0.614440 8.2:+13272713 MS.gene036724:CDS
TAGCTGGAAGTAATATTGGA+GGG 0.622888 8.2:+13272616 MS.gene036724:CDS
TGCAGTGGCAAATATCGTGA+TGG 0.628846 8.2:+13271762 MS.gene036724:CDS
ATACCCAGGAACTAGTGGAT+AGG 0.629537 8.2:-13271488 None:intergenic
TGAATTTGAGCATCCAAATG+TGG 0.630535 8.2:+13270928 MS.gene036724:CDS
TATCATTGACACAGTTTCAG+CGG 0.641419 8.2:+13272228 MS.gene036724:CDS
CACATGATTAAGAATGAATG+GGG 0.641925 8.2:+13271457 MS.gene036724:CDS
CTGCACGTGGCTGTAAAGCG+AGG 0.642024 8.2:-13271744 None:intergenic
AGAGGAGCAGCAGCTTCAAG+TGG 0.642094 8.2:-13271861 None:intergenic
TCGAGTCCAAAATATCGAAG+AGG 0.642096 8.2:-13271912 None:intergenic
GTTGGTATAGTGACAAAACT+GGG 0.645105 8.2:+13271615 MS.gene036724:CDS
CCTTCTGGAGAAATTGAAAG+GGG 0.653235 8.2:-13270990 None:intergenic
AGAGTAACCTCCGTATGTGG+TGG 0.659164 8.2:-13271787 None:intergenic
CCGAAAGTAAAGTAAAGACG+GGG 0.692920 8.2:-13272336 None:intergenic
GATGGCACCACCACATACGG+AGG 0.719955 8.2:+13271780 MS.gene036724:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTATGTTAATAATTTTAT+AGG + chr8.2:13272183-13272202 MS.gene036724:intron 10.0%
!!! TATTTAATCTTTTCTTTTTT+TGG - chr8.2:13271086-13271105 None:intergenic 10.0%
!! AAATAAATATAGAAATGAAG+AGG - chr8.2:13271028-13271047 None:intergenic 15.0%
!! ACATTCTAATATTCTTAAAT+TGG + chr8.2:13272138-13272157 MS.gene036724:intron 15.0%
!! TAATATTCTTAAATTGGAAA+TGG + chr8.2:13272144-13272163 MS.gene036724:intron 15.0%
!! TTAGAATCAAAATAAAGTAA+TGG - chr8.2:13271567-13271586 None:intergenic 15.0%
!! TTTCTTATATATACAATTGA+AGG + chr8.2:13272442-13272461 MS.gene036724:intron 15.0%
!! ATAAATTAAAAAAACTGTGC+TGG - chr8.2:13271135-13271154 None:intergenic 20.0%
!!! AAAGTAGAAAAGTTTAAAGT+TGG + chr8.2:13271642-13271661 MS.gene036724:CDS 20.0%
!!! AATAATTTTATAGGCTTCAA+TGG + chr8.2:13272192-13272211 MS.gene036724:intron 20.0%
!!! TAAGACAATTTCTAAGATAA+TGG - chr8.2:13271537-13271556 None:intergenic 20.0%
!!! TAATCTTTTCTTTTTTTGGT+TGG - chr8.2:13271082-13271101 None:intergenic 20.0%
! TTTATACTTGCATCTTATCT+TGG - chr8.2:13272106-13272125 None:intergenic 25.0%
!!! ATTTTAATTAAAGCATACCC+AGG - chr8.2:13271505-13271524 None:intergenic 25.0%
!!! TCACTCAAAATATTGTTTTG+TGG + chr8.2:13271415-13271434 MS.gene036724:CDS 25.0%
AAATACAGACATGAGATTGT+TGG + chr8.2:13271597-13271616 MS.gene036724:intron 30.0%
AACGCAAGAACATTAAAATG+AGG - chr8.2:13271267-13271286 None:intergenic 30.0%
ATAGTAGCTGGAAGTAATAT+TGG + chr8.2:13272612-13272631 MS.gene036724:CDS 30.0%
CAAATCAAACAAGAGATCTA+TGG - chr8.2:13272487-13272506 None:intergenic 30.0%
CACATGATTAAGAATGAATG+GGG + chr8.2:13271457-13271476 MS.gene036724:CDS 30.0%
CCACATGATTAAGAATGAAT+GGG + chr8.2:13271456-13271475 MS.gene036724:CDS 30.0%
GTGGGTAGTAATTGAATATT+TGG + chr8.2:13271311-13271330 MS.gene036724:intron 30.0%
TACATCACCTAACAAAGAAA+AGG + chr8.2:13272034-13272053 MS.gene036724:CDS 30.0%
TCCACATGATTAAGAATGAA+TGG + chr8.2:13271455-13271474 MS.gene036724:CDS 30.0%
TTAATGTTCTTGCGTTAGAT+CGG + chr8.2:13271271-13271290 MS.gene036724:intron 30.0%
! TAGCTAGCATATATTTTCTC+TGG + chr8.2:13272365-13272384 MS.gene036724:intron 30.0%
! TATAGTCCTCTTCGATATTT+TGG + chr8.2:13271906-13271925 MS.gene036724:CDS 30.0%
! TTTAAAGTTGGAGACAAAGT+GGG + chr8.2:13271654-13271673 MS.gene036724:CDS 30.0%
!! TATCGATTTGTGATTGACAT+TGG + chr8.2:13272762-13272781 MS.gene036724:CDS 30.0%
!!! GTTAAGTTTGCTAAAGCTTT+TGG + chr8.2:13271990-13272009 MS.gene036724:CDS 30.0%
!!! TCTTTTCTTTTTTTGGTTGG+AGG - chr8.2:13271079-13271098 None:intergenic 30.0%
AAGTAATATTGGAGGGATGA+AGG + chr8.2:13272623-13272642 MS.gene036724:CDS 35.0%
ACATTTGGATGCTCAAATTC+AGG - chr8.2:13270929-13270948 None:intergenic 35.0%
ACCCGAAAGTAAAGTAAAGA+CGG - chr8.2:13272341-13272360 None:intergenic 35.0%
ATTGGATTACTGAAGTCTCA+TGG + chr8.2:13272271-13272290 MS.gene036724:CDS 35.0%
ATTTGTGTCTCCAAACTTTC+AGG + chr8.2:13271371-13271390 MS.gene036724:intron 35.0%
CAGTGTTCACATAATCCATA+GGG - chr8.2:13272710-13272729 None:intergenic 35.0%
CATGGAAAACTTGTAATGGT+TGG + chr8.2:13272289-13272308 MS.gene036724:CDS 35.0%
CATTTGTTTCCCTGAAAGTT+TGG - chr8.2:13271384-13271403 None:intergenic 35.0%
CCCATTCATTCTTAATCATG+TGG - chr8.2:13271459-13271478 None:intergenic 35.0%
GACTTCAGTAATCCAATTAG+AGG - chr8.2:13272268-13272287 None:intergenic 35.0%
GCTTCAATGGATACATTAGA+CGG + chr8.2:13272205-13272224 MS.gene036724:CDS 35.0%
GGTAGGCTTTACATTGTATT+TGG - chr8.2:13272676-13272695 None:intergenic 35.0%
GTCTCATGGAAAACTTGTAA+TGG + chr8.2:13272285-13272304 MS.gene036724:CDS 35.0%
GTTGGTATAGTGACAAAACT+GGG + chr8.2:13271615-13271634 MS.gene036724:CDS 35.0%
TAGCTGGAAGTAATATTGGA+GGG + chr8.2:13272616-13272635 MS.gene036724:CDS 35.0%
TATCATTGACACAGTTTCAG+CGG + chr8.2:13272228-13272247 MS.gene036724:CDS 35.0%
TGAATTTGAGCATCCAAATG+TGG + chr8.2:13270928-13270947 MS.gene036724:CDS 35.0%
TGTTGGTATAGTGACAAAAC+TGG + chr8.2:13271614-13271633 MS.gene036724:CDS 35.0%
TTTGTGTCTCCAAACTTTCA+GGG + chr8.2:13271372-13271391 MS.gene036724:intron 35.0%
! AACCTTCTGGAGAAATTGAA+AGG - chr8.2:13270995-13271014 None:intergenic 35.0%
! ACCTTCTGGAGAAATTGAAA+GGG - chr8.2:13270994-13271013 None:intergenic 35.0%
! CTTGCTTCCTTTTCTTTGTT+AGG - chr8.2:13272044-13272063 None:intergenic 35.0%
! GTTTAAAGTTGGAGACAAAG+TGG + chr8.2:13271653-13271672 MS.gene036724:CDS 35.0%
!! TTTGATGATGCTAGCATTCA+TGG + chr8.2:13272578-13272597 MS.gene036724:intron 35.0%
AAAGGAAGCAAGAGAACTCT+TGG + chr8.2:13272052-13272071 MS.gene036724:CDS 40.0%
AAGGAAGCAAGAGAACTCTT+GGG + chr8.2:13272053-13272072 MS.gene036724:CDS 40.0%
AATCCAATTAGAGGTGAGAG+AGG - chr8.2:13272259-13272278 None:intergenic 40.0%
ACAACACCTATATGCATACC+AGG - chr8.2:13271942-13271961 None:intergenic 40.0%
ACCCACAATCCAATTCAACA+GGG - chr8.2:13271297-13271316 None:intergenic 40.0%
AGGTGAATGAATGAACCTTC+TGG - chr8.2:13271008-13271027 None:intergenic 40.0%
ATAGGGATGACTTCAATGGT+AGG - chr8.2:13272693-13272712 None:intergenic 40.0%
ATCCATAGGGATGACTTCAA+TGG - chr8.2:13272697-13272716 None:intergenic 40.0%
CCCCGTCTTTACTTTACTTT+CGG + chr8.2:13272336-13272355 MS.gene036724:CDS 40.0%
CCCGAAAGTAAAGTAAAGAC+GGG - chr8.2:13272340-13272359 None:intergenic 40.0%
CCCGTCTTTACTTTACTTTC+GGG + chr8.2:13272337-13272356 MS.gene036724:CDS 40.0%
CCGAAAGTAAAGTAAAGACG+GGG - chr8.2:13272339-13272358 None:intergenic 40.0%
GCAGTGTTCACATAATCCAT+AGG - chr8.2:13272711-13272730 None:intergenic 40.0%
GGATTATGTGAACACTGCAA+TGG + chr8.2:13272713-13272732 MS.gene036724:CDS 40.0%
GTAGCTGGAAGTAATATTGG+AGG + chr8.2:13272615-13272634 MS.gene036724:CDS 40.0%
TACCATTGAAGTCATCCCTA+TGG + chr8.2:13272692-13272711 MS.gene036724:CDS 40.0%
TACCCACAATCCAATTCAAC+AGG - chr8.2:13271298-13271317 None:intergenic 40.0%
TCGAGTCCAAAATATCGAAG+AGG - chr8.2:13271915-13271934 None:intergenic 40.0%
! CCTTCTGGAGAAATTGAAAG+GGG - chr8.2:13270993-13271012 None:intergenic 40.0%
! GGTATGCATATAGGTGTTGT+TGG + chr8.2:13271942-13271961 MS.gene036724:CDS 40.0%
!! CATATAGGTGTTGTTGGTCT+TGG + chr8.2:13271948-13271967 MS.gene036724:CDS 40.0%
AAAGCATACCCAGGAACTAG+TGG - chr8.2:13271496-13271515 None:intergenic 45.0%
ATCCAAATGTGGCCTTTGGT+TGG + chr8.2:13270939-13270958 MS.gene036724:CDS 45.0%
ATGATGCTAGCATTCATGGC+AGG + chr8.2:13272582-13272601 MS.gene036724:intron 45.0%
CATCCTCTCTCACCTCTAAT+TGG + chr8.2:13272253-13272272 MS.gene036724:CDS 45.0%
CCCCTTTCAATTTCTCCAGA+AGG + chr8.2:13270990-13271009 MS.gene036724:CDS 45.0%
GACAAGCCTGGTATGCATAT+AGG + chr8.2:13271933-13271952 MS.gene036724:CDS 45.0%
GCCCTGTTGAATTGGATTGT+GGG + chr8.2:13271293-13271312 MS.gene036724:intron 45.0%
GCTTCAAGTGGTAAACCATC+AGG - chr8.2:13271852-13271871 None:intergenic 45.0%
GTGATACCAGCACAAAGAAG+AGG - chr8.2:13271882-13271901 None:intergenic 45.0%
TCCAAATGTGGCCTTTGGTT+GGG + chr8.2:13270940-13270959 MS.gene036724:CDS 45.0%
TGATGCTAGCATTCATGGCA+GGG + chr8.2:13272583-13272602 MS.gene036724:intron 45.0%
TGCAGTGGCAAATATCGTGA+TGG + chr8.2:13271762-13271781 MS.gene036724:CDS 45.0%
TTAGATCGGCCCTGTTGAAT+TGG + chr8.2:13271285-13271304 MS.gene036724:intron 45.0%
TTTGCGGTTCACATTCCTGA+TGG + chr8.2:13271834-13271853 MS.gene036724:CDS 45.0%
! ACTTGTAATGGTTGGTGCTC+CGG + chr8.2:13272297-13272316 MS.gene036724:CDS 45.0%
! ATACCCAGGAACTAGTGGAT+AGG - chr8.2:13271491-13271510 None:intergenic 45.0%
!! ATAGGTGTTGTTGGTCTTGG+TGG + chr8.2:13271951-13271970 MS.gene036724:CDS 45.0%
!! TAGGTGTTGTTGGTCTTGGT+GGG + chr8.2:13271952-13271971 MS.gene036724:CDS 45.0%
!! TATTTTGGACTCGACAAGCC+TGG + chr8.2:13271921-13271940 MS.gene036724:CDS 45.0%
AAGGGGAGAGAAGACCAGAT+TGG - chr8.2:13270976-13270995 None:intergenic 50.0%
ACGATATTTGCCACTGCACG+TGG - chr8.2:13271760-13271779 None:intergenic 50.0%
AGAGTAACCTCCGTATGTGG+TGG - chr8.2:13271790-13271809 None:intergenic 50.0%
CCACCTATCCACTAGTTCCT+GGG + chr8.2:13271485-13271504 MS.gene036724:CDS 50.0%
CGGAGGTTACTCTGACTCAA+TGG + chr8.2:13271797-13271816 MS.gene036724:CDS 50.0%
GAGCATCCAAATGTGGCCTT+TGG + chr8.2:13270935-13270954 MS.gene036724:CDS 50.0%
GCAGGGAGAAAGATAGTAGC+TGG + chr8.2:13272600-13272619 MS.gene036724:intron 50.0%
GGCCCTGTTGAATTGGATTG+TGG + chr8.2:13271292-13271311 MS.gene036724:intron 50.0%
GGTTGTAGACGAGCACTTTG+CGG + chr8.2:13271818-13271837 MS.gene036724:CDS 50.0%
GTCAGAGTAACCTCCGTATG+TGG - chr8.2:13271793-13271812 None:intergenic 50.0%
GTTGGAGACAAAGTGGGTGT+TGG + chr8.2:13271660-13271679 MS.gene036724:CDS 50.0%
TCCACCTATCCACTAGTTCC+TGG + chr8.2:13271484-13271503 MS.gene036724:CDS 50.0%
AGAGGAGCAGCAGCTTCAAG+TGG - chr8.2:13271864-13271883 None:intergenic 55.0%
CGTGATGGCACCACCACATA+CGG + chr8.2:13271777-13271796 MS.gene036724:CDS 55.0%
GCCCAACCAAAGGCCACATT+TGG - chr8.2:13270944-13270963 None:intergenic 55.0%
GCTGCTCCTCTTCTTTGTGC+TGG + chr8.2:13271873-13271892 MS.gene036724:CDS 55.0%
GTCTCTTGCTGCCCAACCAA+AGG - chr8.2:13270954-13270973 None:intergenic 55.0%
TGGGCAGCAAGAGACCAATC+TGG + chr8.2:13270959-13270978 MS.gene036724:CDS 55.0%
! CCCAGGAACTAGTGGATAGG+TGG - chr8.2:13271488-13271507 None:intergenic 55.0%
!! GTTGTTGGTCTTGGTGGGCT+TGG + chr8.2:13271957-13271976 MS.gene036724:CDS 55.0%
!! TCTTGGTGGGCTTGGTCACA+TGG + chr8.2:13271965-13271984 MS.gene036724:CDS 55.0%
CGCTTTACAGCCACGTGCAG+TGG + chr8.2:13271747-13271766 MS.gene036724:CDS 60.0%
CTGCACGTGGCTGTAAAGCG+AGG - chr8.2:13271747-13271766 None:intergenic 60.0%
GATGGCACCACCACATACGG+AGG + chr8.2:13271780-13271799 MS.gene036724:CDS 60.0%
GTAAAGACGGGGAGCTCGAG+AGG - chr8.2:13272328-13272347 None:intergenic 60.0%
GGGAGCTCGAGAGGCTTCGC+CGG - chr8.2:13272319-13272338 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 13270914 13272809 13270914 ID=MS.gene036724
chr8.2 mRNA 13270914 13272809 13270914 ID=MS.gene036724.t1;Parent=MS.gene036724
chr8.2 exon 13270914 13271011 13270914 ID=MS.gene036724.t1.exon1;Parent=MS.gene036724.t1
chr8.2 CDS 13270914 13271011 13270914 ID=cds.MS.gene036724.t1;Parent=MS.gene036724.t1
chr8.2 exon 13271393 13271506 13271393 ID=MS.gene036724.t1.exon2;Parent=MS.gene036724.t1
chr8.2 CDS 13271393 13271506 13271393 ID=cds.MS.gene036724.t1;Parent=MS.gene036724.t1
chr8.2 exon 13271605 13272118 13271605 ID=MS.gene036724.t1.exon3;Parent=MS.gene036724.t1
chr8.2 CDS 13271605 13272118 13271605 ID=cds.MS.gene036724.t1;Parent=MS.gene036724.t1
chr8.2 exon 13272205 13272358 13272205 ID=MS.gene036724.t1.exon4;Parent=MS.gene036724.t1
chr8.2 CDS 13272205 13272358 13272205 ID=cds.MS.gene036724.t1;Parent=MS.gene036724.t1
chr8.2 exon 13272604 13272809 13272604 ID=MS.gene036724.t1.exon5;Parent=MS.gene036724.t1
chr8.2 CDS 13272604 13272809 13272604 ID=cds.MS.gene036724.t1;Parent=MS.gene036724.t1
Gene Sequence

>MS.gene036724

ATGGGATCACAACCTGAATTTGAGCATCCAAATGTGGCCTTTGGTTGGGCAGCAAGAGACCAATCTGGTCTTCTCTCCCCTTTCAATTTCTCCAGAAGGTTCATTCATTCACCTCTTCATTTCTATATTTATTTAACTACATTTTTTGTAAATGTCTTTAAGCCTCCAACCAAAAAAAGAAAAGATTAAATACAGTTATCAGATGATAAAGTTTTATTCCAGCACAGTTTTTTTAATTTATACTAGAACATTATACACATTGATCATTGACACATTTTTAATTTACTTGCAAAACAATTAGTTTATTTTTATAAAATCTAGTTTTTATGTTCTTTTTTTTACATAAATTACCTCATTTTAATGTTCTTGCGTTAGATCGGCCCTGTTGAATTGGATTGTGGGTAGTAATTGAATATTTGGACATGTTTAGAGTCAAAGTGTTAGCTAAATAACTCACATTTGTGTCTCCAAACTTTCAGGGAAACAAATGAAAAAGATGTGTCACTCAAAATATTGTTTTGTGGAATATGTCACACAGATCTCCACATGATTAAGAATGAATGGGGCATATCCACCTATCCACTAGTTCCTGGGTATGCTTTAATTAAAATCACTACTCACCATTATCTTAGAAATTGTCTTAGCTTTTTCCATTACTTTATTTTGATTCTAATTTATATAAGAAATACAGACATGAGATTGTTGGTATAGTGACAAAACTGGGAAGCAAAGTAGAAAAGTTTAAAGTTGGAGACAAAGTGGGTGTTGGCTTCATGATCGATTCATGTCGATCATGTCAAAATTGTGCTGAAAATCTCGAAAGTTATTGTCCTCGCTTTACAGCCACGTGCAGTGGCAAATATCGTGATGGCACCACCACATACGGAGGTTACTCTGACTCAATGGTTGTAGACGAGCACTTTGCGGTTCACATTCCTGATGGTTTACCACTTGAAGCTGCTGCTCCTCTTCTTTGTGCTGGTATCACAGTGTATAGTCCTCTTCGATATTTTGGACTCGACAAGCCTGGTATGCATATAGGTGTTGTTGGTCTTGGTGGGCTTGGTCACATGGCTGTTAAGTTTGCTAAAGCTTTTGGTGCTAATGTGACTGTGATTAGTACATCACCTAACAAAGAAAAGGAAGCAAGAGAACTCTTGGGAGCTGACTCATTTTTGATAAGTCGTGACCAAGATAAGATGCAAGTATAAATACAATAGTTAAACATTCTAATATTCTTAAATTGGAAATGGTAATCAATTAGTAATTAACTATGTTAATAATTTTATAGGCTTCAATGGATACATTAGACGGTATCATTGACACAGTTTCAGCGGAACATCCTCTCTCACCTCTAATTGGATTACTGAAGTCTCATGGAAAACTTGTAATGGTTGGTGCTCCGGCGAAGCCTCTCGAGCTCCCCGTCTTTACTTTACTTTCGGGTAAGTTAGCTAGCATATATTTTCTCTGGTCTCATATATAAGACTAATTAGTCTAAATACGTTAACTTTTATTGATTCGACTTTTTCTTATATATACAATTGAAGGTAGTATATGAAAAACGCGTCCATAGATCTCTTGTTTGATTTGAAGCAATAACAAAGTGCATATATATAAGTATAATGCACATGAGAATATTAATTTAATTTATAAATAAACATTTTGATGATGCTAGCATTCATGGCAGGGAGAAAGATAGTAGCTGGAAGTAATATTGGAGGGATGAAGGAGACTCAAGATATGATTGATTTTGCTGCCAAATACAATGTAAAGCCTACCATTGAAGTCATCCCTATGGATTATGTGAACACTGCAATGGAGCGACTCGTCAAAGCAGATGTCAAATATCGATTTGTGATTGACATTGGAAACACTCTCAAACCAAGCTCTTAA
Protein sequence

>MS.gene036724.t1

MGSQPEFEHPNVAFGWAARDQSGLLSPFNFSRRETNEKDVSLKILFCGICHTDLHMIKNEWGISTYPLVPGHEIVGIVTKLGSKVEKFKVGDKVGVGFMIDSCRSCQNCAENLESYCPRFTATCSGKYRDGTTTYGGYSDSMVVDEHFAVHIPDGLPLEAAAPLLCAGITVYSPLRYFGLDKPGMHIGVVGLGGLGHMAVKFAKAFGANVTVISTSPNKEKEARELLGADSFLISRDQDKMQASMDTLDGIIDTVSAEHPLSPLIGLLKSHGKLVMVGAPAKPLELPVFTLLSGRKIVAGSNIGGMKETQDMIDFAAKYNVKPTIEVIPMDYVNTAMERLVKADVKYRFVIDIGNTLKPSS