AlfalfaGEDB | MS.gene027825

M. sativa cultivar XinJiangDaYe / MS.gene027825

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0008152 GO:0008270 GO:0016491 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0055114
PFAM: PF00107.29 PF08240.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene027825.t1	XP_003612973.2	97.8	361	8	0	1	361	33	393	9.80E-204	719.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene027825.t1	P93257	76.8	357	83	0	3	359	4	360	4.1e-166	585.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene027825.t1	G7KGH6	97.8	361	8	0	1	361	1	361	7.1e-204	719.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene002257	MS.gene027825	PPI
MS.gene002258	MS.gene027825	PPI
MS.gene008956	MS.gene027825	PPI
MS.gene027816	MS.gene027825	PPI
MS.gene027817	MS.gene027825	PPI
MS.gene027818	MS.gene027825	PPI
MS.gene027820	MS.gene027825	PPI
MS.gene027821	MS.gene027825	PPI
MS.gene027824	MS.gene027825	PPI
MS.gene027825	MS.gene070876	PPI

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	bit score
MS.gene027825.t1	MTR_5g031190	97.784	361	8	1	361	1	361	726
MS.gene027825.t1	MTR_5g031180	86.704	361	48	1	361	1	361	608
MS.gene027825.t1	MTR_8g068190	81.389	360	67	1	360	1	360	579
MS.gene027825.t1	MTR_5g031250	77.562	361	81	1	361	1	361	574
MS.gene027825.t1	MTR_5g031390	76.731	361	84	1	361	1	361	572
MS.gene027825.t1	MTR_5g031230	76.177	361	86	1	361	1	361	566
MS.gene027825.t1	MTR_5g031310	77.337	353	80	8	360	9	361	563
MS.gene027825.t1	MTR_5g031360	76.923	351	81	10	360	12	362	560
MS.gene027825.t1	MTR_4g115300	75.069	361	90	1	361	1	361	558
MS.gene027825.t1	MTR_5g031305	76.771	353	82	8	360	9	361	557

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene027825.t1	AT4G37970	66.197	355	120	0	6	360	7	361	8.09e-174	488
MS.gene027825.t1	AT4G37980	72.000	350	98	0	11	360	7	356	1.91e-173	486
MS.gene027825.t1	AT4G37990	72.571	350	96	0	11	360	7	356	3.09e-172	484
MS.gene027825.t1	AT4G39330	63.585	357	130	0	1	357	1	357	1.65e-169	477
MS.gene027825.t1	AT2G21730	61.891	349	131	2	11	357	5	353	7.88e-157	445
MS.gene027825.t1	AT2G21890	60.920	348	135	1	11	357	5	352	2.57e-155	441
MS.gene027825.t1	AT4G39330	62.783	309	115	0	1	309	1	309	1.23e-139	399
MS.gene027825.t1	AT4G37980	72.887	284	77	0	11	294	7	290	9.75e-136	389
MS.gene027825.t1	AT4G37970	65.398	289	100	0	6	294	7	295	1.76e-134	385
MS.gene027825.t1	AT3G19450	54.335	346	158	0	11	356	9	354	9.44e-119	348

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Find 97 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTCAAAGTTGGAGAC+AGG	0.459613	5.2:-21529052	MS.gene027825:CDS
AAACTTCAAAGTTGGAGACA+GGG	0.615703	5.2:-21529051	MS.gene027825:CDS
AAAGTGTTCGTCGACAACCA+TGG	0.696527	5.2:+21528887	None:intergenic
AAGCTTTCGGATGGGCAGCT+AGG	0.490753	5.2:-21530009	MS.gene027825:CDS
AAGGAAGCCATTGAACACTT+AGG	0.565621	5.2:-21528648	MS.gene027825:CDS
AATATGTTATAGGCTGTAAT+GGG	0.459443	5.2:-21528470	MS.gene027825:intron
AATGGCCTCAAATCCAGAAA+CGG	0.577912	5.2:-21530044	MS.gene027825:CDS
AATGGTAAACTTGTTATGGT+TGG	0.469139	5.2:-21528374	MS.gene027825:CDS
ACAACTTTGACATGAATGGC+AGG	0.589783	5.2:+21529004	None:intergenic
ACAATTGGTGGGAGTATGAT+TGG	0.420703	5.2:-21528210	MS.gene027825:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAACATCTCATAAACGA+TGG	-	chr5.2:21528393-21528412	MS.gene027825:CDS	30.0%
AAGGTGAAAAACTTCAAAGT+TGG	-	chr5.2:21529019-21529038	MS.gene027825:CDS	30.0%
ACTAAAAATATAAACCGACG+TGG	+	chr5.2:21528269-21528288	None:intergenic	30.0%
AGAAACATCTCATAAACGAT+GGG	-	chr5.2:21528394-21528413	MS.gene027825:CDS	30.0%
CAATATGTTATAGGCTGTAA+TGG	-	chr5.2:21529607-21529626	MS.gene027825:intron	30.0%
CTAAAAATATAAACCGACGT+GGG	+	chr5.2:21528268-21528287	None:intergenic	30.0%
CTTGGTCTATTGAAGAATAA+TGG	-	chr5.2:21529686-21529705	MS.gene027825:intron	30.0%
GGATTATGTAAATACTGCAA+TGG	-	chr5.2:21529969-21529988	MS.gene027825:CDS	30.0%
TACTTCTCCTAACAAAAAGA+AGG	-	chr5.2:21529411-21529430	MS.gene027825:intron	30.0%
TGCTTAAACAATGCTAATCA+AGG	-	chr5.2:21528315-21528334	MS.gene027825:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	21528035	21530065	21528035	ID=MS.gene027825
chr5.2	mRNA	21528035	21530065	21528035	ID=MS.gene027825.t1;Parent=MS.gene027825
chr5.2	exon	21529968	21530065	21529968	ID=MS.gene027825.t1.exon1;Parent=MS.gene027825.t1
chr5.2	CDS	21529968	21530065	21529968	ID=cds.MS.gene027825.t1;Parent=MS.gene027825.t1
chr5.2	exon	21529233	21529346	21529233	ID=MS.gene027825.t1.exon2;Parent=MS.gene027825.t1
chr5.2	CDS	21529233	21529346	21529233	ID=cds.MS.gene027825.t1;Parent=MS.gene027825.t1
chr5.2	exon	21528605	21529118	21528605	ID=MS.gene027825.t1.exon3;Parent=MS.gene027825.t1
chr5.2	CDS	21528605	21529118	21528605	ID=cds.MS.gene027825.t1;Parent=MS.gene027825.t1
chr5.2	exon	21528327	21528480	21528327	ID=MS.gene027825.t1.exon4;Parent=MS.gene027825.t1
chr5.2	CDS	21528327	21528480	21528327	ID=cds.MS.gene027825.t1;Parent=MS.gene027825.t1
chr5.2	exon	21528035	21528240	21528035	ID=MS.gene027825.t1.exon5;Parent=MS.gene027825.t1
chr5.2	CDS	21528035	21528240	21528035	ID=cds.MS.gene027825.t1;Parent=MS.gene027825.t1

Gene Sequence

>MS.gene027825

ATGGCCTCAAATCCAGAAACGGAGCATCCCAAAAAAGCTTTCGGATGGGCAGCTAGGGACACATCTGGAGTCCTTTCTCCTTTCAAGTTCTCTAGAAGGTATGTAACCATTCATGTATTCATGCAGCCTTAGTGAAATTATTATAATGACAACAATAAAAGCTACATTTTACATTATCCTTGCGTGTCCCTTTTTTCCTTCATCAAACATTGGCGATGCATATAAAACTTCCCACGTCGGTTTATATTTTTAGTTTGTTTAAATATAAAGATTAACTAATTGCTTAAACAATGCTAATCAAGGTGGTTTTCACTTGGTATGATGATTTATGTTGTTTGATTGTTGAGTGATAAAGTAAAAGAAACATCTCATAAACGATGGGGACTGGATCATCTCTAGCGAACGGAGAGTCCAGTGCAATTTAGGTCATCAAGAAGTTAAAAGATTTAAAGACAGGGTGTGAATTGTCCCGCTTGAGAAAACATAAGAGATTTTCATTGTAGAGATTCATCCTGAATGTTGATGTGTGATGTAAAATCCTGATTTTTTTTTTTTATGGATAATGCTAATTAAAGATCGAGAAGCATTGTTATAGCGAAAATAACAATTGACATATGATTTATTTTAATTGGCTCCTTCACGAGCACATCACTCGCGAGAAATAACACTGCTCTTTTTTATATATATTTAAATCGATAATATTTTTCATTCCTTTTCAGGGAAACAGGGGAGAAGGATGTGGCATTCAAAGTACTATTTTGCGGTATATGTCACTCGGACCTCCACATGGCTAAGAATGAGTGGGGCAGTACTACTTACCCAGTAGTTCCTGGGTACTCTAACATCAAAAAACAAACCATTGTTTATTTAATTTTCAATGAGTTAAACATTACTCCATCATAAAACAAACTAATTTTTTTGTTTCTTTCTCATCTCATTTGTTGAAGACATGAAGTTGCTGGTGAAGTGACAGAGGTGGGAAGCAAGGTGAAAAACTTCAAAGTTGGAGACAGGGTTGGTGTGGGGTGCATGGTGGGATCCTGCCATTCATGTCAAAGTTGTCGCGAGGATCTCGAAAATTACTGCTCAAAGATGATTCAGACATACAGTTCCAAGAATGTTGATGGCACTATCACATATGGAGGCTACTCTGACACCATGGTTGTCGACGAACACTTTGTTGTCCGTATTCCTGATGCCTTATCACTTGATGCTGCTGCTCCTCTCCTTTGTGCTGGGATCACAGTGTATAGCCCAATGAAACATTTTGGATTAGACAAACCTGGACTGCATATAGGTGTGGTTGGTCTTGGTGGATTAGGTCATATGGCTGTGAAGTTCGCCAAAGCTTTTGGTGTAAAGGTAACTGTGGTAAGTACTTCTCCTAACAAAAAGAAGGAAGCCATTGAACACTTAGGAGCTGACTCATTCGTGGTTAGTCGCGAACAAGACCAGATGAAGGTGCGTACCAATAATTCGCTTTTAATGACTAATTTAGAAACCAAATCTATTTCTATATAGTAATCGATTTATCGACGATCTAAAAAATTGACCTTTAATTCTAATGTTGTTCAATATGTTATAGGCTGTAATGGGCACGTTTGATGGAATCATCGACACCGTTTCAGCACTCCATCCTCTAATGCCTTTGCTTGGTCTATTGAAGAATAATGGTAAACTTGTTATGGTTGGAGCTCCAGAGAAGCCTTTGGAGTTTCCAGTATTTTCTTTGATTGTGGGTAAGCATATGATAAAAATTCTATACAGACTATGTTATATTAAAATATGAAAATTGTTAAATATACATCACATTAATTGTTGGCAGGGAGAAAGACAATTGGTGGGAGTATGATTGGAGGGATGAAGGAAACACAAGAAATGATTGATTTTGCAGCCAAGCATGGCGTAAAACCTGATATTGAGGTTGTTCCAGTGGATTATGTAAATACTGCAATGGAGCGCTTACTCAAAGCTGATGTGAAATATCGATTTGTTATTGACATTGGAAACACAATGAAGGCAAGCTCTTAA

Protein sequence

>MS.gene027825.t1

MASNPETEHPKKAFGWAARDTSGVLSPFKFSRRETGEKDVAFKVLFCGICHSDLHMAKNEWGSTTYPVVPGHEVAGEVTEVGSKVKNFKVGDRVGVGCMVGSCHSCQSCREDLENYCSKMIQTYSSKNVDGTITYGGYSDTMVVDEHFVVRIPDALSLDAAAPLLCAGITVYSPMKHFGLDKPGLHIGVVGLGGLGHMAVKFAKAFGVKVTVVSTSPNKKKEAIEHLGADSFVVSREQDQMKAVMGTFDGIIDTVSALHPLMPLLGLLKNNGKLVMVGAPEKPLEFPVFSLIVGRKTIGGSMIGGMKETQEMIDFAAKHGVKPDIEVVPVDYVNTAMERLLKADVKYRFVIDIGNTMKASS