AlfalfaGEDB | MS.gene58124

M. sativa cultivar XinJiangDaYe / MS.gene58124

KEGG: K00083
GO: GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0008152 GO:0008270 GO:0016491 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0055114
PFAM: PF00107.29 PF08240.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58124.t1	O82515.1	94.6	373	6	1	1	373	1	359	2.10E-201	711.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58124.t1	O82515	94.6	373	6	1	1	373	1	359	5.1e-204	711.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58124.t1	Q53X16	94.6	373	6	1	1	373	1	359	1.5e-201	711.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050216	MS.gene58124	0.822328	2.51E-53	-1.69E-46
MS.gene050381	MS.gene58124	-0.80974	1.63E-50	-1.69E-46
MS.gene050868	MS.gene58124	0.830378	3.04E-55	-1.69E-46
MS.gene050871	MS.gene58124	0.830982	2.16E-55	-1.69E-46
MS.gene051138	MS.gene58124	-0.820618	6.24E-53	-1.69E-46
MS.gene051268	MS.gene58124	0.827993	1.15E-54	-1.69E-46
MS.gene051509	MS.gene58124	0.811633	6.35E-51	-1.69E-46
MS.gene051874	MS.gene58124	0.827284	1.70E-54	-1.69E-46
MS.gene053420	MS.gene58124	-0.821495	3.92E-53	-1.69E-46
MS.gene05494	MS.gene58124	0.81721	3.71E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene027821	MS.gene58124	PPI
MS.gene068611	MS.gene58124	PPI
MS.gene068614	MS.gene58124	PPI
MS.gene068619	MS.gene58124	PPI
MS.gene58124	MS.gene70270	PPI
MS.gene58124	MS.gene070869	PPI
MS.gene58124	MS.gene068613	PPI
MS.gene58124	MS.gene068614	PPI
MS.gene58124	MS.gene008956	PPI
MS.gene58124	MS.gene027816	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58124.t1	MTR_8g092630	93.370	362	10	1	12	373	69	416	0.0	688
MS.gene58124.t1	MTR_5g031230	63.612	371	120	2	1	370	1	357	4.21e-170	479
MS.gene58124.t1	MTR_5g031190	63.539	373	121	2	1	372	1	359	1.20e-167	473
MS.gene58124.t1	MTR_4g115300	62.803	371	123	2	1	370	1	357	2.17e-167	472
MS.gene58124.t1	MTR_5g031250	61.995	371	126	2	1	370	1	357	4.16e-164	464
MS.gene58124.t1	MTR_5g031390	61.126	373	130	2	1	372	1	359	6.40e-163	461
MS.gene58124.t1	MTR_5g031310	60.714	364	128	2	8	370	9	358	2.96e-162	459
MS.gene58124.t1	MTR_5g031360	61.433	363	125	2	9	370	11	359	2.66e-160	454
MS.gene58124.t1	MTR_5g031210	61.456	371	128	2	1	370	1	357	2.61e-158	449
MS.gene58124.t1	MTR_5g031305	60.165	364	130	2	8	370	9	358	3.32e-158	449

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58124.t1	AT4G39330	73.656	372	83	2	1	371	1	358	0.0	548
MS.gene58124.t1	AT2G21730	69.337	362	94	3	12	370	6	353	0.0	508
MS.gene58124.t1	AT2G21890	69.529	361	94	3	12	370	6	352	0.0	508
MS.gene58124.t1	AT4G39330	71.429	315	75	2	1	314	1	301	1.06e-157	445
MS.gene58124.t1	AT4G37970	58.108	370	140	2	4	372	5	360	6.92e-156	443
MS.gene58124.t1	AT4G37990	63.636	363	117	2	9	370	5	353	3.29e-153	436
MS.gene58124.t1	AT4G37980	62.259	363	122	2	9	370	5	353	1.32e-151	432
MS.gene58124.t1	AT4G37970	57.705	305	114	2	4	307	5	295	4.42e-122	355
MS.gene58124.t1	AT1G72680	50.843	356	159	3	16	370	14	354	5.17e-116	341
MS.gene58124.t1	AT4G37980	59.736	303	107	2	9	310	5	293	2.02e-115	338

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Find 103 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTTTGAGTGGGAGTT+CGG	0.429852	4.2:-9636633	None:intergenic
AAAATCAGAATAGCCACCAT+AGG	0.602620	4.2:-9638604	None:intergenic
AAAGGGACACGAACCTATGG+TGG	0.638008	4.2:+9638591	MS.gene58124:CDS
AAATCAACACGGCCATGGAA+AGG	0.552965	4.2:+9640066	MS.gene58124:CDS
AACCTTCGAGAGAAATGAAA+GGG	0.510126	4.2:-9636692	None:intergenic
AACTTCAGTAGACCAAGCAG+TGG	0.689529	4.2:-9639634	None:intergenic
AAGTGGAGCACCAGCGTCAA+GGG	0.477411	4.2:-9638673	None:intergenic
AATGGGAAACTGGTCACTGT+AGG	0.556394	4.2:+9639658	MS.gene58124:CDS
ACAAAGCTGATGTGAAATAT+CGG	0.393376	4.2:+9640093	MS.gene58124:CDS
ACACACTCTCAAGAACGATT+GGG	0.475053	4.2:+9636877	MS.gene58124:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAAGCTGATGTGAAATAT+CGG	+	chr4.2:9640093-9640112	MS.gene58124:CDS	30.0%
ACCCCTCAAATTAAAATTAG+AGG	+	chr4.2:9637117-9637136	MS.gene58124:intron	30.0%
ACCTATAACTCTCCTTATAA+AGG	+	chr4.2:9638573-9638592	MS.gene58124:CDS	30.0%
ACGAAATAAGAGTAAAACAG+CGG	-	chr4.2:9638989-9639008	None:intergenic	30.0%
AGTTATATGAAGGTAAAACC+AGG	+	chr4.2:9638348-9638367	MS.gene58124:intron	30.0%
CAAATTAAAATTAGAGGTGG+AGG	+	chr4.2:9637123-9637142	MS.gene58124:intron	30.0%
CAATGTGAAAAAATTCAGAG+TGG	+	chr4.2:9638455-9638474	MS.gene58124:CDS	30.0%
CCTATAACTCTCCTTATAAA+GGG	+	chr4.2:9638574-9638593	MS.gene58124:CDS	30.0%
CCTCAAATTAAAATTAGAGG+TGG	+	chr4.2:9637120-9637139	MS.gene58124:intron	30.0%
CCTGAGTTTGAATAATAGAA+AGG	+	chr4.2:9639356-9639375	MS.gene58124:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	9636614	9640154	9636614	ID=MS.gene58124
chr4.2	mRNA	9636614	9640154	9636614	ID=MS.gene58124.t1;Parent=MS.gene58124
chr4.2	exon	9636614	9636753	9636614	ID=MS.gene58124.t1.exon1;Parent=MS.gene58124.t1
chr4.2	CDS	9636614	9636753	9636614	ID=cds.MS.gene58124.t1;Parent=MS.gene58124.t1
chr4.2	exon	9636814	9636927	9636814	ID=MS.gene58124.t1.exon2;Parent=MS.gene58124.t1
chr4.2	CDS	9636814	9636927	9636814	ID=cds.MS.gene58124.t1;Parent=MS.gene58124.t1
chr4.2	exon	9638419	9638929	9638419	ID=MS.gene58124.t1.exon3;Parent=MS.gene58124.t1
chr4.2	CDS	9638419	9638929	9638419	ID=cds.MS.gene58124.t1;Parent=MS.gene58124.t1
chr4.2	exon	9639574	9639727	9639574	ID=MS.gene58124.t1.exon4;Parent=MS.gene58124.t1
chr4.2	CDS	9639574	9639727	9639574	ID=cds.MS.gene58124.t1;Parent=MS.gene58124.t1
chr4.2	exon	9639952	9640154	9639952	ID=MS.gene58124.t1.exon5;Parent=MS.gene58124.t1
chr4.2	CDS	9639952	9640154	9639952	ID=cds.MS.gene58124.t1;Parent=MS.gene58124.t1

Gene Sequence

>MS.gene58124

ATGGCGAAATCACCCGAAACCGAACTCCCACTCAAAGCTTTTGGTTGGGCTGCTAGAGACACTTCTGGCACACTCTCTCCCTTTCATTTCTCTCGAAGGTTCTTTTCTTTTCTTTTTTTTTTCTTTTTCTTTTCATCTCAGTCTTTATAATTTTTTACGTGATTAATTTTTATTTTTATTTTTATTTTTATTTTTTGTAGGGAAAATGGTGATGATGATGTAAGTGTGAAAATTCTATATTGTGGAGTTTGTCATTCTGATCTACACACTCTCAAGAACGATTGGGGTTTCACTACTTACCCTGTTGTTCCTGGGTATGTCTGTTTTTCTTTTCTCTCTTTCTTTTACATTTTGCAGTGCATAATAGTATCATGCAAATCTCACTCTCTGATAGTATTTTTAATTATTATTATTATTATATTATTATATTCGACTTTGTTTATTGCCGTCTTTCTGTTGAATTGAATAGAAAAATGGATACAATAGTTGAATCCCAGTTCTTTACCCCTCAAATTAAAATTAGAGGTGGAGGTTGTTTTTAAACTTAAAATATAATATATGATCTCACATCATGAATTATATATTGTTACTTTTTTCACTAAAAGACGCTCTGCCTGCTTGATGATTATGTCATACTCATACATACTTGTCTATTAGAATTTGGATCTAAATTCTTAATTCACTTTATTTACCTTTGGAATTATGTGTATGTTTGGATTGTTTTATTTGAGTTTATCTATTGACATAAGTTTTGTGAGATTGTTTGAAAGAACTTGTGAAAACACCTTATGAGAATTTTCATAAGCTTTTTTTAACTTATTTTCGTAAGTTCTTTGATATAGCTTATAAAAACAACTTATATCATATACAAAAACAATTTAACATTATTTTTTCTCTAGCTATAAAAATAGCTTATGCAAGCTTATACATAAGCGCTTATCATGATAAGTAAGTGCATGTACTTCAAGCTTCAAATAAGTTGTTTATCCAAACAAGCCCTTACGAACAGATAATTAAATAAACCTATTATATGAATAACCACCTACCTGTTTTTAATCATGTTTAACACACTTAGGCACTACATCACCTTAATTTGAATCCTCAAAAGTGAATAGTTGCAAAGCTATGAAGCACGGATACGGACACCGGACACTGACACGCCGACACACTAATAATTTGAAAAAATCACATAATTAAGTGTAATTACAAGTGTCGGTCTCGTGTTGGTGTCGGACATGTGTCCGACACCAGGACACGCCTAATCCGAGGAGTGTCCGTGCTTCATAGTTGCAAAGTATATCTATCATTGATTAATAAGTTAATCAATGAGCGTGTTGAAATATCAAATTTTTCATTCTTTTTCATTAATGGTTTATGGTACTTAAGTTTCTTCTTCATTAATCCTAGTAAACTATTGGCCCATGTAACCTCAAAATTACATAATGTGTCTGTGTTACAAATGAAGTCTAGGTGTGTTACAATTTTACAACTAATAATTATTCAAGTGCACTGCAAAGACTGGAAATAAGGATGATATGTATGCGATTTTTGGTGGAAATGATGCAATATTCCCGATCTAGAAGCGGAAACTTTCACTGCAGTTTTCTATCTTTGGAGGAAATGATGCAATATTTGATTGTTAAATTAGTTGGTTTCTCATCCTTGACTATTGATTGATAGTTTATGCGTGCATGGCTTTGTGCAATAGTCAATATTGGACATTACTTGCTTATAAGTTATATGAAGGTAAAACCAGGACATCTTTGGGATTAACTTGCATTGACTTTTGTGGTTGTGTTTTGCAGGCATGAAATTGTTGGCGTTGTGACAAAAGTTGGAATCAATGTGAAAAAATTCAGAGTGGGTGATAACGTTGGTGTTGGTGTAATTGTCGAGTCTTGTCAGACTTGTGAGAATTGCAATCAAGATTTGGAGCAGTACTGTCCTAAACCTGTATTTACCTATAACTCTCCTTATAAAGGGACACGAACCTATGGTGGCTATTCTGATTTTGTGGTTGTTCACCAGCGGTATGTAGTTCAGTTTCCTGACAACTTACCCCTTGACGCTGGTGCTCCACTTCTGTGTGCCGGGATCACCGTGTATAGCCCGATGAAGTATTATGGTATGACTGAACCAGGCAAACATTTGGGAGTGGCAGGGCTTGGTGGGTTAGGCCATGTTGCAATCAAATTCGGTAAAGCATTTGGGCTGAAGGTTACTGTTATTAGTACCTCTCCAAACAAGGAAACTGAGGCCATTGATAAACTTGGTGCTGATTCTTTCCTTGTTTCCAAAGACCCTGAGAAAATGAAGGTAAGATACCACACCATTAACTTTAAAACCAACCTGTTTCGTCTAGGTTATGCTCTCCGCTGTTTTACTCTTATTTCGTCATACAGTTCTATATAGGAGTTGTTATGGATAATGATATCCATAGTTTACTTATAAATGGGCAGGTCGCTAGGGACGGATGCATGTGTGATGTGGTGTGGGCTTGTGCCTACACAAAATATTTTAAATTTTTATTTTTAAGTAGAATAATATAGTAATTGTTGGCATTTAGACCAAATAACCTACACTTATTCTCTCTTTGCCCACACTTAAATCACACTTGACACAACAACACAACCTTATTTCTGAATATATATTTAATGCTTCCAATTAATATATATAGTGCCCCCAGTTTTCAAAATTTCTGGATCCGTCAATGAGTATATAAACAAAATTAAATCTTGTAAACCTGAGTTTGAATAATAGAAAGGCACTGCAGTTTGCAGCAACTCTGCAGTCACAGATGTAGGCAAAATTGGTTGAACTCCATAATCAAATCATGTGTTCTCTGTTTGCGTTTTTCATATTTGTTTTCTTTTGGACCAGGTTGTTGTAACAAAAACAATGGATTGATTGGTTTAATATCTGCTTATAATGCATTTGTGTTTAAATACAATTTTATGCAGGCTGCTATGGGAACCATGGACTACATCATAGACACAATATCTGCTGCTCATTCCCTGATGCCACTGCTTGGTCTACTGAAGTTGAATGGGAAACTGGTCACTGTAGGGTTGCCTAGCAAGCCCCTTGAGCTCTCTGTCTTTCCATTAGTTGCAGGTAAACCATCAATAATTCTCTGTCAATTCTTTAATGCAATAATATGTGAATTTGAATTGATGTTTGAAACCAAGAATGAGTCTGTTACTTCCAAATCTGACCTGAAACATTTATACATGCTCATCTATTCTTGAAACTTTCAACTACTCTACATTTCATTATGATACAGAGATTTTGACCAATGAATTATCCAAATTTTCACATGTCTAATGTCTTGACTGCAGGACGGAAGCTTATCGGAGGGAGTAACATTGGAGGGATGAAAGAGACTCAGGAGATGCTCGATTTCTGCGGCAAGCACAACATAACTGCAGATATTGAGTTGATTAAGATGCATGAAATCAACACGGCCATGGAAAGGCTTCACAAAGCTGATGTGAAATATCGGTTTGTGATTGATGTGGCCAACTCCTTCTCAAGTTTGTAG

Protein sequence

>MS.gene58124.t1

MAKSPETELPLKAFGWAARDTSGTLSPFHFSRRFFSFLFFFFFFSSQENGDDDVSVKILYCGVCHSDLHTLKNDWGFTTYPVVPGHEIVGVVTKVGINVKKFRVGDNVGVGVIVESCQTCENCNQDLEQYCPKPVFTYNSPYKGTRTYGGYSDFVVVHQRYVVQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKFGKAFGLKVTVISTSPNKETEAIDKLGADSFLVSKDPEKMKAAMGTMDYIIDTISAAHSLMPLLGLLKLNGKLVTVGLPSKPLELSVFPLVAGRKLIGGSNIGGMKETQEMLDFCGKHNITADIELIKMHEINTAMERLHKADVKYRFVIDVANSFSSL