Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070881.t1 | XP_003612989.1 | 86 | 371 | 16 | 4 | 1 | 345 | 1 | 361 | 1.60E-174 | 622.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070881.t1 | Q9ZRF1 | 72.6 | 361 | 73 | 4 | 6 | 345 | 4 | 359 | 7.7e-146 | 518.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070881.t1 | G7KGJ2 | 86.0 | 371 | 16 | 4 | 1 | 345 | 1 | 361 | 1.1e-174 | 622.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070881.t1 | MTR_5g031390 | 86.885 | 366 | 22 | 3 | 1 | 345 | 1 | 361 | 0.0 | 606 |
| MS.gene070881.t1 | MTR_5g031230 | 74.863 | 366 | 66 | 4 | 1 | 345 | 1 | 361 | 0.0 | 526 |
| MS.gene070881.t1 | MTR_5g031310 | 75.410 | 366 | 63 | 5 | 1 | 344 | 1 | 361 | 0.0 | 518 |
| MS.gene070881.t1 | MTR_4g115300 | 73.913 | 368 | 66 | 4 | 1 | 345 | 1 | 361 | 0.0 | 518 |
| MS.gene070881.t1 | MTR_5g031250 | 74.044 | 366 | 69 | 4 | 1 | 345 | 1 | 361 | 0.0 | 516 |
| MS.gene070881.t1 | MTR_5g031305 | 73.585 | 371 | 61 | 5 | 1 | 344 | 1 | 361 | 0.0 | 513 |
| MS.gene070881.t1 | MTR_5g031190 | 69.945 | 366 | 84 | 4 | 1 | 345 | 1 | 361 | 3.62e-179 | 501 |
| MS.gene070881.t1 | MTR_5g031300 | 72.207 | 367 | 75 | 5 | 1 | 345 | 1 | 362 | 9.42e-179 | 499 |
| MS.gene070881.t1 | MTR_5g031210 | 72.404 | 366 | 75 | 4 | 1 | 345 | 1 | 361 | 5.47e-178 | 498 |
| MS.gene070881.t1 | MTR_5g031360 | 72.299 | 361 | 64 | 4 | 10 | 344 | 12 | 362 | 1.06e-174 | 489 |
| MS.gene070881.t1 | MTR_5g031180 | 72.404 | 366 | 75 | 4 | 1 | 345 | 1 | 361 | 1.70e-171 | 481 |
| MS.gene070881.t1 | MTR_8g068190 | 72.329 | 365 | 75 | 4 | 1 | 344 | 1 | 360 | 1.12e-169 | 476 |
| MS.gene070881.t1 | MTR_8g092630 | 58.287 | 362 | 119 | 6 | 8 | 343 | 60 | 415 | 9.44e-128 | 372 |
| MS.gene070881.t1 | MTR_5g031430 | 54.857 | 350 | 132 | 4 | 14 | 342 | 14 | 358 | 2.41e-121 | 354 |
| MS.gene070881.t1 | MTR_1g025950 | 51.841 | 353 | 143 | 4 | 9 | 339 | 8 | 355 | 9.42e-117 | 342 |
| MS.gene070881.t1 | MTR_5g031250 | 74.274 | 241 | 42 | 2 | 1 | 226 | 1 | 236 | 1.80e-116 | 338 |
| MS.gene070881.t1 | MTR_1g107425 | 46.571 | 350 | 157 | 4 | 11 | 337 | 9 | 351 | 7.07e-99 | 296 |
| MS.gene070881.t1 | MTR_2g009810 | 48.864 | 352 | 150 | 6 | 14 | 342 | 62 | 406 | 6.23e-97 | 293 |
| MS.gene070881.t1 | MTR_1g107425 | 46.207 | 290 | 125 | 5 | 11 | 277 | 9 | 290 | 9.05e-74 | 230 |
| MS.gene070881.t1 | MTR_5g031290 | 82.727 | 110 | 19 | 0 | 235 | 344 | 84 | 193 | 7.58e-59 | 188 |
| MS.gene070881.t1 | MTR_5g031290 | 86.250 | 80 | 10 | 1 | 1 | 79 | 1 | 80 | 9.28e-44 | 149 |
| MS.gene070881.t1 | MTR_2g009820 | 45.417 | 240 | 96 | 5 | 130 | 342 | 23 | 254 | 1.35e-44 | 154 |
| MS.gene070881.t1 | MTR_6g466320 | 28.632 | 234 | 146 | 7 | 1 | 223 | 6 | 229 | 1.40e-16 | 80.1 |
| MS.gene070881.t1 | MTR_6g465010 | 28.632 | 234 | 146 | 7 | 1 | 223 | 6 | 229 | 1.40e-16 | 80.1 |
| MS.gene070881.t1 | MTR_6g465010 | 29.091 | 220 | 136 | 6 | 15 | 223 | 3 | 213 | 1.69e-16 | 79.7 |
| MS.gene070881.t1 | MTR_5g031380 | 57.407 | 54 | 18 | 1 | 80 | 128 | 19 | 72 | 9.18e-15 | 70.1 |
| MS.gene070881.t1 | MTR_3g089977 | 23.677 | 359 | 199 | 13 | 39 | 338 | 37 | 379 | 1.21e-12 | 68.6 |
| MS.gene070881.t1 | MTR_3g089940 | 23.782 | 349 | 192 | 12 | 39 | 328 | 37 | 370 | 2.57e-12 | 67.8 |
| MS.gene070881.t1 | MTR_3g089940 | 23.782 | 349 | 192 | 12 | 39 | 328 | 37 | 370 | 2.66e-12 | 67.8 |
| MS.gene070881.t1 | MTR_3g089970 | 23.496 | 349 | 193 | 12 | 39 | 328 | 38 | 371 | 5.11e-12 | 66.6 |
| MS.gene070881.t1 | MTR_7g068320 | 25.788 | 349 | 206 | 14 | 39 | 337 | 48 | 393 | 7.67e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070881.t1 | AT4G37980 | 63.944 | 355 | 102 | 4 | 11 | 344 | 7 | 356 | 4.14e-143 | 409 |
| MS.gene070881.t1 | AT4G37990 | 65.722 | 353 | 95 | 4 | 11 | 342 | 7 | 354 | 7.58e-143 | 409 |
| MS.gene070881.t1 | AT4G39330 | 56.077 | 362 | 133 | 5 | 1 | 341 | 1 | 357 | 1.05e-140 | 403 |
| MS.gene070881.t1 | AT4G37970 | 56.111 | 360 | 132 | 5 | 6 | 344 | 7 | 361 | 4.68e-134 | 386 |
| MS.gene070881.t1 | AT2G21890 | 54.545 | 352 | 133 | 4 | 12 | 341 | 6 | 352 | 7.10e-132 | 381 |
| MS.gene070881.t1 | AT2G21730 | 54.958 | 353 | 131 | 5 | 12 | 341 | 6 | 353 | 1.06e-131 | 381 |
| MS.gene070881.t1 | AT4G39330 | 54.545 | 308 | 114 | 5 | 1 | 287 | 1 | 303 | 1.84e-110 | 324 |
| MS.gene070881.t1 | AT4G37980 | 61.279 | 297 | 89 | 4 | 11 | 286 | 7 | 298 | 3.22e-104 | 308 |
| MS.gene070881.t1 | AT4G37970 | 52.525 | 297 | 115 | 5 | 6 | 281 | 7 | 298 | 6.45e-96 | 287 |
| MS.gene070881.t1 | AT1G72680 | 45.714 | 350 | 159 | 5 | 16 | 342 | 14 | 355 | 1.69e-93 | 283 |
| MS.gene070881.t1 | AT3G19450 | 46.439 | 351 | 162 | 4 | 11 | 340 | 9 | 354 | 1.85e-92 | 280 |
| MS.gene070881.t1 | AT4G34230 | 46.591 | 352 | 162 | 3 | 7 | 337 | 4 | 350 | 2.25e-84 | 259 |
| MS.gene070881.t1 | AT4G34230 | 46.307 | 352 | 163 | 3 | 7 | 337 | 4 | 350 | 1.84e-83 | 257 |
| MS.gene070881.t1 | AT4G37970 | 53.617 | 235 | 89 | 3 | 6 | 225 | 7 | 236 | 9.17e-78 | 239 |
| MS.gene070881.t1 | AT4G37970 | 53.617 | 235 | 89 | 3 | 6 | 225 | 7 | 236 | 1.15e-77 | 239 |
| MS.gene070881.t1 | AT5G43940 | 24.011 | 354 | 200 | 13 | 39 | 336 | 48 | 388 | 4.30e-12 | 67.0 |
| MS.gene070881.t1 | AT5G43940 | 24.011 | 354 | 200 | 13 | 39 | 336 | 36 | 376 | 4.59e-12 | 67.0 |
| MS.gene070881.t1 | AT4G22110 | 23.894 | 339 | 205 | 12 | 39 | 327 | 43 | 378 | 7.31e-11 | 63.2 |
| MS.gene070881.t1 | AT4G22110 | 23.894 | 339 | 205 | 12 | 39 | 327 | 43 | 378 | 7.31e-11 | 63.2 |
Find 80 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATATTTCACATCTGCTTTA+AGG | 0.136438 | 5.4:+21479932 | None:intergenic |
| GCTGGTTCCATCACTATATT+TGG | 0.170826 | 5.4:+21481371 | None:intergenic |
| TATCGATTTGTGATTGATAT+TGG | 0.198958 | 5.4:-21479913 | MS.gene070881:CDS |
| TTCTTTGGATGCTCAAATTC+AGG | 0.236168 | 5.4:+21482116 | None:intergenic |
| GCCCAACCAAATGCCTTCTT+TGG | 0.249082 | 5.4:+21482101 | None:intergenic |
| AATTAGTACATCACCTAAAA+AGG | 0.281212 | 5.4:-21481113 | MS.gene070881:CDS |
| TCTTGGTGGACTTGGCCATA+TGG | 0.337845 | 5.4:-21481176 | MS.gene070881:CDS |
| TACGAACTATCCACTAGTTC+CGG | 0.344610 | 5.4:-21481656 | MS.gene070881:CDS |
| TTTAGGTGATGTACTAATTA+CGG | 0.352263 | 5.4:+21481117 | None:intergenic |
| TGGACGAGCACTTTGTGTTT+CGG | 0.357600 | 5.4:-21481317 | MS.gene070881:CDS |
| GTGAAATTTGCCAAAGCCTT+TGG | 0.370310 | 5.4:-21481151 | MS.gene070881:CDS |
| GTTGTTGGTCTTGGTGGACT+TGG | 0.372585 | 5.4:-21481184 | MS.gene070881:CDS |
| CACATTAGCACCAAAGGCTT+TGG | 0.375006 | 5.4:+21481141 | None:intergenic |
| GAGCATCCAAAGAAGGCATT+TGG | 0.380999 | 5.4:-21482107 | MS.gene070881:CDS |
| ACCATCAGTGAGTGTCAATT+GGG | 0.382344 | 5.4:+21481395 | None:intergenic |
| ATAGGAATGATCTCAATATC+AGG | 0.391852 | 5.4:+21479985 | None:intergenic |
| CATCCTCTATTACCTCTGAT+TGG | 0.399993 | 5.4:-21480300 | MS.gene070881:CDS |
| AACCATCAGTGAGTGTCAAT+TGG | 0.401417 | 5.4:+21481394 | None:intergenic |
| ATAGGTGTTGTTGGTCTTGG+TGG | 0.407624 | 5.4:-21481190 | MS.gene070881:CDS |
| CCCCTTTCAATTTCTCCAGA+AGG | 0.415467 | 5.4:-21482052 | MS.gene070881:intron |
| AATATAGGTGTTGTTGGTCT+TGG | 0.416186 | 5.4:-21481193 | MS.gene070881:CDS |
| TGCTGCTCCTTCCTTTGTGC+TGG | 0.417199 | 5.4:-21481268 | MS.gene070881:CDS |
| GCATCAAGAGGTAACTCATC+TGG | 0.417564 | 5.4:+21481291 | None:intergenic |
| ACGAACTATCCACTAGTTCC+GGG | 0.427510 | 5.4:-21481655 | MS.gene070881:CDS |
| TGGGCAGCTAGAGACTCTTC+TGG | 0.441511 | 5.4:-21482083 | MS.gene070881:CDS |
| TGGCAAATTTCACAGCCATA+TGG | 0.446571 | 5.4:+21481161 | None:intergenic |
| TCCAAAGAAGGCATTTGGTT+GGG | 0.449991 | 5.4:-21482102 | MS.gene070881:CDS |
| TTCATAAGGCGAAGAATGAA+TGG | 0.450733 | 5.4:-21481684 | MS.gene070881:CDS |
| GGTATGAATATAGGTGTTGT+TGG | 0.459605 | 5.4:-21481199 | MS.gene070881:CDS |
| GTAGGGAGAAAGATAGTGGC+TGG | 0.463044 | 5.4:-21480075 | MS.gene070881:intron |
| ATATACAGACATGAAATTGT+TGG | 0.463799 | 5.4:-21481543 | MS.gene070881:intron |
| GAATAATTTGTAGGCTGCAA+TGG | 0.469877 | 5.4:-21480363 | MS.gene070881:intron |
| AACCTTCTGGAGAAATTGAA+AGG | 0.475349 | 5.4:+21482050 | None:intergenic |
| GCTGTGTTGACGTAATCAAT+AGG | 0.480301 | 5.4:+21479967 | None:intergenic |
| ACCTTCTGGAGAAATTGAAA+GGG | 0.480545 | 5.4:+21482051 | None:intergenic |
| GTAGGCTGCAATGGGTACTT+TGG | 0.485806 | 5.4:-21480354 | MS.gene070881:intron |
| TCATAAGGCGAAGAATGAAT+GGG | 0.490720 | 5.4:-21481683 | MS.gene070881:CDS |
| AATAATTTGTAGGCTGCAAT+GGG | 0.491959 | 5.4:-21480362 | MS.gene070881:intron |
| ATTCATTCTTCGCCTTATGA+AGG | 0.497579 | 5.4:+21481686 | None:intergenic |
| ATGTCACTCGGACCTTCATA+AGG | 0.505748 | 5.4:-21481698 | MS.gene070881:CDS |
| CAGAGTAGGTGTCGGATGCT+TGG | 0.505785 | 5.4:-21481472 | MS.gene070881:CDS |
| ATAGTGGCTGGAAGTTTGAT+TGG | 0.509085 | 5.4:-21480063 | MS.gene070881:CDS |
| GACAAGCCTGGTATGAATAT+AGG | 0.509901 | 5.4:-21481208 | MS.gene070881:intron |
| ATTGGTTTACTCAAGTCTCA+TGG | 0.521108 | 5.4:-21480282 | MS.gene070881:CDS |
| AGAAAAGCCACCATGAGTGC+TGG | 0.530485 | 5.4:+21481353 | None:intergenic |
| ATCCAAAGAAGGCATTTGGT+TGG | 0.531418 | 5.4:-21482103 | MS.gene070881:CDS |
| TGAATTTGAGCATCCAAAGA+AGG | 0.538083 | 5.4:-21482114 | MS.gene070881:CDS |
| ATATATATACCTACAAGTAA+AGG | 0.539004 | 5.4:+21480207 | None:intergenic |
| AAAGTGAGCAAGTTCAAAGT+TGG | 0.541588 | 5.4:-21481498 | MS.gene070881:CDS |
| AGTGATGGAACCAGCACTCA+TGG | 0.542579 | 5.4:-21481363 | MS.gene070881:CDS |
| AAAGCTTACCCCGGAACTAG+TGG | 0.544688 | 5.4:+21481646 | None:intergenic |
| GCATTAAAAGTGTTGTATTG+TGG | 0.545788 | 5.4:-21481724 | MS.gene070881:CDS |
| AAACCAATCAGAGGTAATAG+AGG | 0.546078 | 5.4:+21480297 | None:intergenic |
| ATTGGTAGGGAGAAAGATAG+TGG | 0.553404 | 5.4:-21480079 | MS.gene070881:intron |
| GTCTCATGGAAAGCTTGTAA+TGG | 0.559201 | 5.4:-21480268 | MS.gene070881:CDS |
| TGGCTGGAAGTTTGATTGGT+GGG | 0.560766 | 5.4:-21480059 | MS.gene070881:CDS |
| TACGGTCACATTAGCACCAA+AGG | 0.563794 | 5.4:+21481135 | None:intergenic |
| GCTGCAATGGGTACTTTGGA+TGG | 0.565027 | 5.4:-21480350 | MS.gene070881:CDS |
| CCCCAATTGACACTCACTGA+TGG | 0.567667 | 5.4:-21481396 | MS.gene070881:CDS |
| GTTGGCATAGTTACAGAAGT+GGG | 0.578876 | 5.4:-21481525 | MS.gene070881:CDS |
| GTGGCTGGAAGTTTGATTGG+TGG | 0.585158 | 5.4:-21480060 | MS.gene070881:CDS |
| TGTTGGCATAGTTACAGAAG+TGG | 0.590305 | 5.4:-21481526 | MS.gene070881:CDS |
| GATGGTTCCAAATATAGTGA+TGG | 0.592641 | 5.4:-21481378 | MS.gene070881:CDS |
| CATGGAAAGCTTGTAATGGT+TGG | 0.604281 | 5.4:-21480264 | MS.gene070881:CDS |
| AGTAATACCAGCACAAAGGA+AGG | 0.605140 | 5.4:+21481261 | None:intergenic |
| ATTTCACATCTGCTTTAAGG+AGG | 0.611618 | 5.4:+21479935 | None:intergenic |
| ACGACTTATTAGAAATGAGT+CGG | 0.622330 | 5.4:+21481063 | None:intergenic |
| TGATTACGTCAACACAGCGA+TGG | 0.626468 | 5.4:-21479962 | MS.gene070881:CDS |
| GAAGGAGCAGCAGCATCAAG+AGG | 0.628449 | 5.4:+21481279 | None:intergenic |
| TTCAAAGTTGGAGACAGAGT+AGG | 0.639117 | 5.4:-21481486 | MS.gene070881:CDS |
| GTTGGAGACAGAGTAGGTGT+CGG | 0.649941 | 5.4:-21481480 | MS.gene070881:CDS |
| ACAACACCTATATTCATACC+AGG | 0.652836 | 5.4:+21481202 | None:intergenic |
| CCTTCTGGAGAAATTGAAAG+GGG | 0.653235 | 5.4:+21482052 | None:intergenic |
| CCATCAGTGAGTGTCAATTG+GGG | 0.658178 | 5.4:+21481396 | None:intergenic |
| CATAAGGCGAAGAATGAATG+GGG | 0.693942 | 5.4:-21481682 | MS.gene070881:CDS |
| GACTTGAGTAAACCAATCAG+AGG | 0.695064 | 5.4:+21480288 | None:intergenic |
| CGAACTATCCACTAGTTCCG+GGG | 0.700828 | 5.4:-21481654 | MS.gene070881:intron |
| ACACAGTAATACCAGCACAA+AGG | 0.701903 | 5.4:+21481257 | None:intergenic |
| GATGGAACCAGCACTCATGG+TGG | 0.728708 | 5.4:-21481360 | MS.gene070881:CDS |
| GTATTGTGGAATATGTCACT+CGG | 0.739362 | 5.4:-21481710 | MS.gene070881:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTAATATAAATTGAATA+TGG | + | chr5.4:21480237-21480256 | None:intergenic | 10.0% |
| !!! | ATATTTTGATTTATATGTTT+GGG | + | chr5.4:21480420-21480439 | None:intergenic | 10.0% |
| !!! | ATTTAATTTAAACATTTAGA+AGG | + | chr5.4:21481884-21481903 | None:intergenic | 10.0% |
| !!! | TATATTTTGATTTATATGTT+TGG | + | chr5.4:21480421-21480440 | None:intergenic | 10.0% |
| !!! | TTTAATTTAAACATTTAGAA+GGG | + | chr5.4:21481883-21481902 | None:intergenic | 10.0% |
| !! | AAATTCAATTTGATTCTAAT+TGG | - | chr5.4:21480440-21480459 | MS.gene070881:intron | 15.0% |
| !! | ATATTATGTTTAGAAAGAAA+AGG | + | chr5.4:21480012-21480031 | None:intergenic | 15.0% |
| !! | TATTCCTTCAAAAAAAAAAA+AGG | + | chr5.4:21481481-21481500 | None:intergenic | 15.0% |
| !!! | ATATAGTTGCTTTTTTTTTT+TGG | - | chr5.4:21481030-21481049 | MS.gene070881:intron | 15.0% |
| !!! | TAAACCTTTTTTTTTTTTGA+AGG | - | chr5.4:21481474-21481493 | MS.gene070881:CDS | 15.0% |
| !! | AAAAGGTTTAAATGTGTAAT+TGG | + | chr5.4:21481464-21481483 | None:intergenic | 20.0% |
| !! | AAATAACATCATGAAAAAAG+TGG | - | chr5.4:21480147-21480166 | MS.gene070881:intron | 20.0% |
| !! | ATATATATACCTACAAGTAA+AGG | + | chr5.4:21481812-21481831 | None:intergenic | 20.0% |
| !! | CTTTGTAAAAATATTGGTAT+TGG | + | chr5.4:21481218-21481199 | None:intergenic | 20.0% |
| !! | TATAGTTGCTTATTTAGAAA+CGG | - | chr5.4:21481499-21481518 | MS.gene070881:CDS | 20.0% |
| !!! | ATCAATCTAGAATAATTTGT+AGG | - | chr5.4:21481644-21481663 | MS.gene070881:intron | 20.0% |
| !!! | CTTTGAAAAAATATTGGTAT+TGG | - | chr5.4:21481230-21481249 | MS.gene070881:intron | 20.0% |
| !!! | TATGTTTGGGTTTTTTTAAA+TGG | + | chr5.4:21480407-21480426 | None:intergenic | 20.0% |
| !!! | TTTTGGTTTAAATGTGTAAT+TGG | - | chr5.4:21481047-21481066 | MS.gene070881:intron | 20.0% |
| ! | AAGTATTTCACATTATTGGT+AGG | - | chr5.4:21481923-21481942 | MS.gene070881:intron | 25.0% |
| ! | AATTAGTACATCACCTAAAA+AGG | - | chr5.4:21480903-21480922 | MS.gene070881:intron | 25.0% |
| ! | AGTATTTCACATTATTGGTA+GGG | - | chr5.4:21481924-21481943 | MS.gene070881:intron | 25.0% |
| ! | ATATACAGACATGAAATTGT+TGG | - | chr5.4:21480473-21480492 | MS.gene070881:intron | 25.0% |
| ! | ATGCTTTACATTTGTTTGTA+AGG | - | chr5.4:21480087-21480106 | MS.gene070881:intron | 25.0% |
| ! | ATTACTATGTCAAATTTCCA+GGG | - | chr5.4:21480249-21480268 | MS.gene070881:CDS | 25.0% |
| ! | CTAATTGTCAACTTCTAAAT+CGG | + | chr5.4:21481617-21481636 | None:intergenic | 25.0% |
| ! | CTTTGTAAAAATATTGGCAT+TGG | - | chr5.4:21481138-21481157 | MS.gene070881:CDS | 25.0% |
| ! | CTTTGTAAAAATATTGGCAT+TGG | + | chr5.4:21481157-21481138 | None:intergenic | 25.0% |
| ! | GAAAAAGTGAGCAAATAAAA+TGG | + | chr5.4:21480061-21480080 | None:intergenic | 25.0% |
| ! | TATTACTATGTCAAATTTCC+AGG | - | chr5.4:21480248-21480267 | MS.gene070881:CDS | 25.0% |
| ! | TCACAAGTATTTCACATTAT+TGG | - | chr5.4:21481919-21481938 | MS.gene070881:intron | 25.0% |
| ! | TCGTCAAAATTAGTAGAAAT+AGG | + | chr5.4:21480121-21480140 | None:intergenic | 25.0% |
| ! | TGAAATACTTGTGAGTTTAA+AGG | + | chr5.4:21481913-21481932 | None:intergenic | 25.0% |
| ! | TTTAGGTGATGTACTAATTA+CGG | + | chr5.4:21480902-21480921 | None:intergenic | 25.0% |
| !! | CTTTGGAAAAATATTGGTAT+TGG | + | chr5.4:21481282-21481301 | None:intergenic | 25.0% |
| !!! | ACTTTTTTTTTGTTTGGCAT+TGG | - | chr5.4:21481168-21481187 | MS.gene070881:CDS | 25.0% |
| !!! | CAATATTTTTACAAAGTGCA+GGG | - | chr5.4:21481317-21481336 | MS.gene070881:CDS | 25.0% |
| !!! | CAATATTTTTACAAAGTGCA+GGG | + | chr5.4:21481336-21481317 | None:intergenic | 25.0% |
| !!! | CAATATTTTTTCAAAGTGCA+GGG | + | chr5.4:21481226-21481245 | None:intergenic | 25.0% |
| !!! | TATCGATTTGTGATTGATAT+TGG | - | chr5.4:21482103-21482122 | MS.gene070881:CDS | 25.0% |
| AATGAATGAATTGAACCTTC+TGG | + | chr5.4:21479982-21480001 | None:intergenic | 30.0% | |
| ACGACTTATTAGAAATGAGT+CGG | + | chr5.4:21480956-21480975 | None:intergenic | 30.0% | |
| ATAGGAATGATCTCAATATC+AGG | + | chr5.4:21482034-21482053 | None:intergenic | 30.0% | |
| ATGATGATAATCAAACACCT+AGG | + | chr5.4:21480197-21480216 | None:intergenic | 30.0% | |
| CCTGCACTTTGTAAAAATAT+TGG | - | chr5.4:21481132-21481151 | MS.gene070881:CDS | 30.0% | |
| CCTGCACTTTGTAAAAATAT+TGG | + | chr5.4:21481151-21481132 | None:intergenic | 30.0% | |
| GATATTTCACATCTGCTTTA+AGG | + | chr5.4:21482087-21482106 | None:intergenic | 30.0% | |
| GCATTATCTTATTATGTCCT+AGG | - | chr5.4:21480177-21480196 | MS.gene070881:intron | 30.0% | |
| TAACATCATGAAAAAAGTGG+AGG | - | chr5.4:21480150-21480169 | MS.gene070881:intron | 30.0% | |
| TACATCACCTAAAAAGGAAA+AGG | - | chr5.4:21480909-21480928 | MS.gene070881:intron | 30.0% | |
| TATTGTACCTTCATCTGATT+CGG | + | chr5.4:21480982-21481001 | None:intergenic | 30.0% | |
| TCATTCACAAAATTACTCAG+CGG | - | chr5.4:21481591-21481610 | MS.gene070881:intron | 30.0% | |
| ! | AATAATTTGTAGGCTGCAAT+GGG | - | chr5.4:21481654-21481673 | MS.gene070881:intron | 30.0% |
| ! | ATTGCTTCCTTTTCCTTTTT+AGG | + | chr5.4:21480919-21480938 | None:intergenic | 30.0% |
| ! | CAAAATCTGTTAAAAGTGCA+GGG | + | chr5.4:21481074-21481093 | None:intergenic | 30.0% |
| ! | CAATATTTTTCCAAAGTGCA+GGG | - | chr5.4:21481286-21481305 | MS.gene070881:CDS | 30.0% |
| ! | CCAAACAAAAAAAAAGTGCA+GGG | + | chr5.4:21481165-21481184 | None:intergenic | 30.0% |
| ! | CCTGCACTTTGAAAAAATAT+TGG | - | chr5.4:21481224-21481243 | MS.gene070881:intron | 30.0% |
| ! | CTTTTCTAACTCAATGGTTT+TGG | - | chr5.4:21480679-21480698 | MS.gene070881:intron | 30.0% |
| !! | CCAATATTTTTACAAAGTGC+AGG | - | chr5.4:21481316-21481335 | MS.gene070881:CDS | 30.0% |
| !! | CCAATATTTTTACAAAGTGC+AGG | + | chr5.4:21481335-21481316 | None:intergenic | 30.0% |
| !! | GCATTAAAAGTGTTGTATTG+TGG | - | chr5.4:21480292-21480311 | MS.gene070881:CDS | 30.0% |
| !!! | CACTTTTTTTTGTTTGGCAT+TGG | - | chr5.4:21481107-21481126 | MS.gene070881:CDS | 30.0% |
| !!! | CACTTTTTTTTGTTTGGCAT+TGG | + | chr5.4:21481126-21481107 | None:intergenic | 30.0% |
| !!! | CCAATATTTTTTCAAAGTGC+AGG | + | chr5.4:21481227-21481246 | None:intergenic | 30.0% |
| AAACCAATCAGAGGTAATAG+AGG | + | chr5.4:21481722-21481741 | None:intergenic | 35.0% | |
| AAAGTGAGCAAGTTCAAAGT+TGG | - | chr5.4:21480518-21480537 | MS.gene070881:intron | 35.0% | |
| ACAACACCTATATTCATACC+AGG | + | chr5.4:21480817-21480836 | None:intergenic | 35.0% | |
| AGGGCATATTTAGCATCATA+TGG | + | chr5.4:21481864-21481883 | None:intergenic | 35.0% | |
| ATTCATTCTTCGCCTTATGA+AGG | + | chr5.4:21480333-21480352 | None:intergenic | 35.0% | |
| CCTACAAGTAAAGGAAAAAC+AGG | + | chr5.4:21481803-21481822 | None:intergenic | 35.0% | |
| GATGGTTCCAAATATAGTGA+TGG | - | chr5.4:21480638-21480657 | MS.gene070881:intron | 35.0% | |
| GTATTGTGGAATATGTCACT+CGG | - | chr5.4:21480306-21480325 | MS.gene070881:CDS | 35.0% | |
| TAAAAGTAGAAAGCTTACCC+CGG | + | chr5.4:21480382-21480401 | None:intergenic | 35.0% | |
| TCATAAGGCGAAGAATGAAT+GGG | - | chr5.4:21480333-21480352 | MS.gene070881:CDS | 35.0% | |
| TGAATTTGAGCATCCAAAGA+AGG | - | chr5.4:21479902-21479921 | MS.gene070881:CDS | 35.0% | |
| TTCATAAGGCGAAGAATGAA+TGG | - | chr5.4:21480332-21480351 | MS.gene070881:CDS | 35.0% | |
| TTCTTTGGATGCTCAAATTC+AGG | + | chr5.4:21479903-21479922 | None:intergenic | 35.0% | |
| ! | AACCTTCTGGAGAAATTGAA+AGG | + | chr5.4:21479969-21479988 | None:intergenic | 35.0% |
| ! | ACCTTCTGGAGAAATTGAAA+GGG | + | chr5.4:21479968-21479987 | None:intergenic | 35.0% |
| ! | ATTGGTTTACTCAAGTCTCA+TGG | - | chr5.4:21481734-21481753 | MS.gene070881:CDS | 35.0% |
| ! | CAAAATCTGTTGAAAGTGCA+GGG | - | chr5.4:21481437-21481456 | MS.gene070881:CDS | 35.0% |
| ! | CCAAAATCTGTTAAAAGTGC+AGG | + | chr5.4:21481075-21481094 | None:intergenic | 35.0% |
| ! | CCAATATTTTTCCAAAGTGC+AGG | - | chr5.4:21481285-21481304 | MS.gene070881:CDS | 35.0% |
| ! | CCTGCACTTTGGAAAAATAT+TGG | + | chr5.4:21481288-21481307 | None:intergenic | 35.0% |
| ! | CCTGCACTTTTAACAGATTT+TGG | - | chr5.4:21481072-21481091 | MS.gene070881:CDS | 35.0% |
| ! | GAATAATTTGTAGGCTGCAA+TGG | - | chr5.4:21481653-21481672 | MS.gene070881:intron | 35.0% |
| ! | GCCAAACAAAAAAAAAGTGC+AGG | + | chr5.4:21481166-21481185 | None:intergenic | 35.0% |
| ! | GCCAAACAAAAAAAAGTGCA+GGG | - | chr5.4:21481346-21481365 | MS.gene070881:CDS | 35.0% |
| ! | GCCAAACAAAAAAAAGTGCA+GGG | + | chr5.4:21481365-21481346 | None:intergenic | 35.0% |
| ! | GGTATGAATATAGGTGTTGT+TGG | - | chr5.4:21480817-21480836 | MS.gene070881:intron | 35.0% |
| ! | TGCCAAACAAAAAAAAGTGC+AGG | - | chr5.4:21481345-21481364 | MS.gene070881:CDS | 35.0% |
| ! | TGCCAAACAAAAAAAAGTGC+AGG | + | chr5.4:21481364-21481345 | None:intergenic | 35.0% |
| !! | AATATAGGTGTTGTTGGTCT+TGG | - | chr5.4:21480823-21480842 | MS.gene070881:intron | 35.0% |
| !! | ATTTCACATCTGCTTTAAGG+AGG | + | chr5.4:21482084-21482103 | None:intergenic | 35.0% |
| !! | CCTGTTTTTCCTTTACTTGT+AGG | - | chr5.4:21481800-21481819 | MS.gene070881:intron | 35.0% |
| !! | CTTTCAACAGATTTTGGCAT+TGG | + | chr5.4:21481433-21481452 | None:intergenic | 35.0% |
| !! | CTTTTAACAGATTTTGGCAC+TGG | - | chr5.4:21481078-21481097 | MS.gene070881:CDS | 35.0% |
| !!! | CCCTGCACTTTTTTTTTGTT+TGG | - | chr5.4:21481162-21481181 | MS.gene070881:CDS | 35.0% |
| !!! | TCCCTGCACTTTTTTTTGTT+TGG | - | chr5.4:21481101-21481120 | MS.gene070881:CDS | 35.0% |
| !!! | TCCCTGCACTTTTTTTTGTT+TGG | + | chr5.4:21481120-21481101 | None:intergenic | 35.0% |
| AACCATCAGTGAGTGTCAAT+TGG | + | chr5.4:21480625-21480644 | None:intergenic | 40.0% | |
| ACACAGTAATACCAGCACAA+AGG | + | chr5.4:21480762-21480781 | None:intergenic | 40.0% | |
| ACCATCAGTGAGTGTCAATT+GGG | + | chr5.4:21480624-21480643 | None:intergenic | 40.0% | |
| AGTAATACCAGCACAAAGGA+AGG | + | chr5.4:21480758-21480777 | None:intergenic | 40.0% | |
| ATAGTGGCTGGAAGTTTGAT+TGG | - | chr5.4:21481953-21481972 | MS.gene070881:intron | 40.0% | |
| ATTGGTAGGGAGAAAGATAG+TGG | - | chr5.4:21481937-21481956 | MS.gene070881:intron | 40.0% | |
| CATAAGGCGAAGAATGAATG+GGG | - | chr5.4:21480334-21480353 | MS.gene070881:CDS | 40.0% | |
| CATCCTCTATTACCTCTGAT+TGG | - | chr5.4:21481716-21481735 | MS.gene070881:CDS | 40.0% | |
| CATGGAAAGCTTGTAATGGT+TGG | - | chr5.4:21481752-21481771 | MS.gene070881:intron | 40.0% | |
| GACAAGCCTGGTATGAATAT+AGG | - | chr5.4:21480808-21480827 | MS.gene070881:intron | 40.0% | |
| GACTTGAGTAAACCAATCAG+AGG | + | chr5.4:21481731-21481750 | None:intergenic | 40.0% | |
| GTCTCATGGAAAGCTTGTAA+TGG | - | chr5.4:21481748-21481767 | MS.gene070881:CDS | 40.0% | |
| GTGAAATTTGCCAAAGCCTT+TGG | - | chr5.4:21480865-21480884 | MS.gene070881:intron | 40.0% | |
| GTTGGCATAGTTACAGAAGT+GGG | - | chr5.4:21480491-21480510 | MS.gene070881:intron | 40.0% | |
| TACGAACTATCCACTAGTTC+CGG | - | chr5.4:21480360-21480379 | MS.gene070881:intron | 40.0% | |
| TCGAGTTCAAAATGTCGAAG+AGG | + | chr5.4:21480790-21480809 | None:intergenic | 40.0% | |
| TGGCAAATTTCACAGCCATA+TGG | + | chr5.4:21480858-21480877 | None:intergenic | 40.0% | |
| TGTTGGCATAGTTACAGAAG+TGG | - | chr5.4:21480490-21480509 | MS.gene070881:intron | 40.0% | |
| TTCAAAGTTGGAGACAGAGT+AGG | - | chr5.4:21480530-21480549 | MS.gene070881:intron | 40.0% | |
| ! | CCAAAATCTGTTGAAAGTGC+AGG | - | chr5.4:21481436-21481455 | MS.gene070881:CDS | 40.0% |
| ! | CCTGCACTTTCAACAGATTT+TGG | + | chr5.4:21481439-21481458 | None:intergenic | 40.0% |
| ! | CCTTCTGGAGAAATTGAAAG+GGG | + | chr5.4:21479967-21479986 | None:intergenic | 40.0% |
| ! | GCTGGTTCCATCACTATATT+TGG | + | chr5.4:21480648-21480667 | None:intergenic | 40.0% |
| ! | GCTGTGTTGACGTAATCAAT+AGG | + | chr5.4:21482052-21482071 | None:intergenic | 40.0% |
| ! | TGGTGGCTTTTCTAACTCAA+TGG | - | chr5.4:21480673-21480692 | MS.gene070881:intron | 40.0% |
| !! | ATCCAAAGAAGGCATTTGGT+TGG | - | chr5.4:21479913-21479932 | MS.gene070881:CDS | 40.0% |
| !! | TCCAAAGAAGGCATTTGGTT+GGG | - | chr5.4:21479914-21479933 | MS.gene070881:CDS | 40.0% |
| ACGAACTATCCACTAGTTCC+GGG | - | chr5.4:21480361-21480380 | MS.gene070881:intron | 45.0% | |
| ATGTCACTCGGACCTTCATA+AGG | - | chr5.4:21480318-21480337 | MS.gene070881:CDS | 45.0% | |
| CACATTAGCACCAAAGGCTT+TGG | + | chr5.4:21480878-21480897 | None:intergenic | 45.0% | |
| CCACGTGGCATGAAATGATT+GGG | - | chr5.4:21481255-21481274 | MS.gene070881:CDS | 45.0% | |
| CCATCAGTGAGTGTCAATTG+GGG | + | chr5.4:21480623-21480642 | None:intergenic | 45.0% | |
| CCCCTTTCAATTTCTCCAGA+AGG | - | chr5.4:21479964-21479983 | MS.gene070881:CDS | 45.0% | |
| GCATCAAGAGGTAACTCATC+TGG | + | chr5.4:21480728-21480747 | None:intergenic | 45.0% | |
| GTCTTTCTCAGATGTTTCCC+TGG | + | chr5.4:21480269-21480288 | None:intergenic | 45.0% | |
| TACGGTCACATTAGCACCAA+AGG | + | chr5.4:21480884-21480903 | None:intergenic | 45.0% | |
| TCGTGATCCGAATCAGATGA+AGG | - | chr5.4:21480972-21480991 | MS.gene070881:intron | 45.0% | |
| TGATTACGTCAACACAGCGA+TGG | - | chr5.4:21482054-21482073 | MS.gene070881:CDS | 45.0% | |
| TGGACGAGCACTTTGTGTTT+CGG | - | chr5.4:21480699-21480718 | MS.gene070881:intron | 45.0% | |
| TGGCTGGAAGTTTGATTGGT+GGG | - | chr5.4:21481957-21481976 | MS.gene070881:intron | 45.0% | |
| ! | CATTTTGAACTCGACAAGCC+TGG | - | chr5.4:21480796-21480815 | MS.gene070881:intron | 45.0% |
| !! | ATAGGTGTTGTTGGTCTTGG+TGG | - | chr5.4:21480826-21480845 | MS.gene070881:intron | 45.0% |
| !! | ATATTGGTATTGGTGCCACG+TGG | - | chr5.4:21481240-21481259 | MS.gene070881:intron | 45.0% |
| !! | GAGCATCCAAAGAAGGCATT+TGG | - | chr5.4:21479909-21479928 | MS.gene070881:CDS | 45.0% |
| AAAGCTTACCCCGGAACTAG+TGG | + | chr5.4:21480373-21480392 | None:intergenic | 50.0% | |
| AGAAAAGCCACCATGAGTGC+TGG | + | chr5.4:21480666-21480685 | None:intergenic | 50.0% | |
| CCCAATCATTTCATGCCACG+TGG | + | chr5.4:21481258-21481277 | None:intergenic | 50.0% | |
| CCCCAATTGACACTCACTGA+TGG | - | chr5.4:21480620-21480639 | MS.gene070881:intron | 50.0% | |
| CGAACTATCCACTAGTTCCG+GGG | - | chr5.4:21480362-21480381 | MS.gene070881:intron | 50.0% | |
| GCCACGTGGCATGAAATGAT+TGG | - | chr5.4:21481254-21481273 | MS.gene070881:CDS | 50.0% | |
| GCCCAACCAAATGCCTTCTT+TGG | + | chr5.4:21479918-21479937 | None:intergenic | 50.0% | |
| GCTGCAATGGGTACTTTGGA+TGG | - | chr5.4:21481666-21481685 | MS.gene070881:CDS | 50.0% | |
| GGAAAAACAGGAAGCTCGAG+AGG | + | chr5.4:21481791-21481810 | None:intergenic | 50.0% | |
| GTAGGCTGCAATGGGTACTT+TGG | - | chr5.4:21481662-21481681 | MS.gene070881:CDS | 50.0% | |
| GTGGCTGGAAGTTTGATTGG+TGG | - | chr5.4:21481956-21481975 | MS.gene070881:intron | 50.0% | |
| GTTGGAGACAGAGTAGGTGT+CGG | - | chr5.4:21480536-21480555 | MS.gene070881:intron | 50.0% | |
| ! | AGTGATGGAACCAGCACTCA+TGG | - | chr5.4:21480653-21480672 | MS.gene070881:intron | 50.0% |
| ! | GTAGGGAGAAAGATAGTGGC+TGG | - | chr5.4:21481941-21481960 | MS.gene070881:intron | 50.0% |
| !! | GTTGTTGGTCTTGGTGGACT+TGG | - | chr5.4:21480832-21480851 | MS.gene070881:intron | 50.0% |
| !! | TCTTGGTGGACTTGGCCATA+TGG | - | chr5.4:21480840-21480859 | MS.gene070881:intron | 50.0% |
| !! | TGGTATTGGTCCCTGCACTT+TGG | + | chr5.4:21481299-21481318 | None:intergenic | 50.0% |
| GAAGGAGCAGCAGCATCAAG+AGG | + | chr5.4:21480740-21480759 | None:intergenic | 55.0% | |
| GATGGAACCAGCACTCATGG+TGG | - | chr5.4:21480656-21480675 | MS.gene070881:intron | 55.0% | |
| TGCTGCTCCTTCCTTTGTGC+TGG | - | chr5.4:21480748-21480767 | MS.gene070881:intron | 55.0% | |
| TGGGCAGCTAGAGACTCTTC+TGG | - | chr5.4:21479933-21479952 | MS.gene070881:CDS | 55.0% | |
| ! | GGAAGCTCGAGAGGCTTTTC+AGG | + | chr5.4:21481782-21481801 | None:intergenic | 55.0% |
| !! | CAGAGTAGGTGTCGGATGCT+TGG | - | chr5.4:21480544-21480563 | MS.gene070881:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 21479888 | 21482150 | 21479888 | ID=MS.gene070881 |
| chr5.4 | mRNA | 21479888 | 21482150 | 21479888 | ID=MS.gene070881.t1;Parent=MS.gene070881 |
| chr5.4 | exon | 21482053 | 21482150 | 21482053 | ID=MS.gene070881.t1.exon1;Parent=MS.gene070881.t1 |
| chr5.4 | CDS | 21482053 | 21482150 | 21482053 | ID=cds.MS.gene070881.t1;Parent=MS.gene070881.t1 |
| chr5.4 | exon | 21481655 | 21481768 | 21481655 | ID=MS.gene070881.t1.exon2;Parent=MS.gene070881.t1 |
| chr5.4 | CDS | 21481655 | 21481768 | 21481655 | ID=cds.MS.gene070881.t1;Parent=MS.gene070881.t1 |
| chr5.4 | exon | 21481254 | 21481557 | 21481254 | ID=MS.gene070881.t1.exon3;Parent=MS.gene070881.t1 |
| chr5.4 | CDS | 21481254 | 21481557 | 21481254 | ID=cds.MS.gene070881.t1;Parent=MS.gene070881.t1 |
| chr5.4 | exon | 21481065 | 21481224 | 21481065 | ID=MS.gene070881.t1.exon4;Parent=MS.gene070881.t1 |
| chr5.4 | CDS | 21481065 | 21481224 | 21481065 | ID=cds.MS.gene070881.t1;Parent=MS.gene070881.t1 |
| chr5.4 | exon | 21480217 | 21480372 | 21480217 | ID=MS.gene070881.t1.exon5;Parent=MS.gene070881.t1 |
| chr5.4 | CDS | 21480217 | 21480372 | 21480217 | ID=cds.MS.gene070881.t1;Parent=MS.gene070881.t1 |
| chr5.4 | exon | 21479888 | 21480093 | 21479888 | ID=MS.gene070881.t1.exon6;Parent=MS.gene070881.t1 |
| chr5.4 | CDS | 21479888 | 21480093 | 21479888 | ID=cds.MS.gene070881.t1;Parent=MS.gene070881.t1 |
| Gene Sequence |
| Protein sequence |
