AlfalfaGEDB | MS.gene068621

M. sativa cultivar XinJiangDaYe / MS.gene068621

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0008152 GO:0008270 GO:0016491 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0055114
PFAM: PF00107.29 PF08240.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068621.t1	XP_003612972.2	96.1	361	14	0	1	361	1	361	6.00E-201	709.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068621.t1	Q9ZRF1	77.5	356	80	0	6	361	4	359	2.0e-165	583.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068621.t1	G7KGH5	96.1	361	14	0	1	361	1	361	4.3e-201	709.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050400	MS.gene068621	0.826449	2.70E-54	-1.69E-46
MS.gene050593	MS.gene068621	0.846073	2.73E-59	-1.69E-46
MS.gene050670	MS.gene068621	0.872001	4.45E-67	-1.69E-46
MS.gene05105	MS.gene068621	0.815635	8.36E-52	-1.69E-46
MS.gene051387	MS.gene068621	0.802604	5.19E-49	-1.69E-46
MS.gene051521	MS.gene068621	0.802346	5.86E-49	-1.69E-46
MS.gene051525	MS.gene068621	0.848255	6.89E-60	-1.69E-46
MS.gene051582	MS.gene068621	0.830234	3.29E-55	-1.69E-46
MS.gene052134	MS.gene068621	0.802504	5.44E-49	-1.69E-46
MS.gene052135	MS.gene068621	0.811974	5.35E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene002257	MS.gene068621	PPI
MS.gene002258	MS.gene068621	PPI
MS.gene008956	MS.gene068621	PPI
MS.gene027816	MS.gene068621	PPI
MS.gene027817	MS.gene068621	PPI
MS.gene027818	MS.gene068621	PPI
MS.gene027820	MS.gene068621	PPI
MS.gene027821	MS.gene068621	PPI
MS.gene027824	MS.gene068621	PPI
MS.gene027825	MS.gene068621	PPI

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	bit score
MS.gene068621.t1	MTR_5g031180	96.122	361	14	1	361	1	361	711
MS.gene068621.t1	MTR_5g031190	84.488	361	56	1	361	1	361	630
MS.gene068621.t1	MTR_8g068190	82.222	360	64	1	360	1	360	580
MS.gene068621.t1	MTR_5g031250	78.116	361	79	1	361	1	361	573
MS.gene068621.t1	MTR_5g031230	77.285	361	82	1	361	1	361	572
MS.gene068621.t1	MTR_5g031310	78.249	354	77	7	360	8	361	570
MS.gene068621.t1	MTR_5g031305	78.249	354	77	7	360	8	361	569
MS.gene068621.t1	MTR_5g031390	76.454	361	85	1	361	1	361	565
MS.gene068621.t1	MTR_4g115300	75.900	361	87	1	361	1	361	564
MS.gene068621.t1	MTR_5g031300	75.775	355	86	7	361	8	362	557

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068621.t1	AT4G37970	65.922	358	122	0	3	360	4	361	3.40e-171	481
MS.gene068621.t1	AT4G37980	69.714	350	106	0	11	360	7	356	6.07e-168	473
MS.gene068621.t1	AT4G37990	71.470	347	99	0	12	358	8	354	6.20e-167	470
MS.gene068621.t1	AT4G39330	63.025	357	132	0	1	357	1	357	2.51e-165	466
MS.gene068621.t1	AT2G21730	62.890	353	129	2	7	357	1	353	6.76e-157	445
MS.gene068621.t1	AT2G21890	62.216	352	132	1	7	357	1	352	4.98e-156	443
MS.gene068621.t1	AT4G39330	63.696	303	110	0	1	303	1	303	8.10e-138	394
MS.gene068621.t1	AT4G37970	65.068	292	102	0	3	294	4	295	1.10e-132	381
MS.gene068621.t1	AT4G37980	69.792	288	87	0	11	298	7	294	2.49e-131	377
MS.gene068621.t1	AT3G19450	53.623	345	160	0	12	356	10	354	9.26e-115	338

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Find 104 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCATCAAAGGCATTAG+TGG	0.416505	5.1:+21436619	None:intergenic
AAAGTTCAAAGTTGGAGACA+CGG	0.703241	5.1:-21437443	MS.gene068621:CDS
AACAAGCCTGGTTTACATGT+GGG	0.577892	5.1:-21437160	MS.gene068621:CDS
AAGAGTACCCGGGAACTAAA+GGG	0.498094	5.1:+21437602	None:intergenic
AAGGAAGCCATTGAACATTT+AGG	0.264479	5.1:-21437040	MS.gene068621:CDS
AAGGTGACAAAGTTCAAAGT+TGG	0.563516	5.1:-21437451	MS.gene068621:CDS
AATGGCTTTACAACCAGAGA+TGG	0.581578	5.1:-21441352	MS.gene068621:CDS
ACAACTTTGACATGAGTGGC+AGG	0.565146	5.1:+21437396	None:intergenic
ACCACACCCACATGTAAACC+AGG	0.610009	5.1:+21437154	None:intergenic
ACCTCCAATTAAAGAAAATG+CGG	0.577029	5.1:+21436537	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAATAGAAGCTCAAGA+TGG	+	chr5.1:21439030-21439049	None:intergenic	30.0%
AAACAAACAAACAAGATGTG+GGG	+	chr5.1:21436859-21436878	None:intergenic	30.0%
AAATTAACTCAAACACCATG+AGG	+	chr5.1:21436472-21436491	None:intergenic	30.0%
AATTTCGATCCATACCATTT+GGG	-	chr5.1:21436587-21436606	MS.gene068621:CDS	30.0%
AATTTGTGTTGAGTTAAGTG+GGG	+	chr5.1:21436627-21436646	None:intergenic	30.0%
ACAAACGAAAACGAATTTGT+CGG	+	chr5.1:21438365-21438384	None:intergenic	30.0%
ACCTCCAATTAAAGAAAATG+CGG	+	chr5.1:21441055-21441074	None:intergenic	30.0%
AGATTATGTGAATAGTGCAA+TGG	-	chr5.1:21441277-21441296	MS.gene068621:CDS	30.0%
AGTATAGTGAGAAGATAACT+TGG	-	chr5.1:21437538-21437557	MS.gene068621:intron	30.0%
AGTGTCAATAATACCATCAA+AGG	+	chr5.1:21440935-21440954	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	21436238	21441373	21436238	ID=MS.gene068621
chr5.1	mRNA	21436238	21441373	21436238	ID=MS.gene068621.t1;Parent=MS.gene068621
chr5.1	exon	21441276	21441373	21441276	ID=MS.gene068621.t1.exon1;Parent=MS.gene068621.t1
chr5.1	CDS	21441276	21441373	21441276	ID=cds.MS.gene068621.t1;Parent=MS.gene068621.t1
chr5.1	exon	21437610	21437723	21437610	ID=MS.gene068621.t1.exon2;Parent=MS.gene068621.t1
chr5.1	CDS	21437610	21437723	21437610	ID=cds.MS.gene068621.t1;Parent=MS.gene068621.t1
chr5.1	exon	21436997	21437510	21436997	ID=MS.gene068621.t1.exon3;Parent=MS.gene068621.t1
chr5.1	CDS	21436997	21437510	21436997	ID=cds.MS.gene068621.t1;Parent=MS.gene068621.t1
chr5.1	exon	21436539	21436692	21436539	ID=MS.gene068621.t1.exon4;Parent=MS.gene068621.t1
chr5.1	CDS	21436539	21436692	21436539	ID=cds.MS.gene068621.t1;Parent=MS.gene068621.t1
chr5.1	exon	21436238	21436443	21436238	ID=MS.gene068621.t1.exon5;Parent=MS.gene068621.t1
chr5.1	CDS	21436238	21436443	21436238	ID=cds.MS.gene068621.t1;Parent=MS.gene068621.t1

Gene Sequence

>MS.gene068621

ATGGCTTTACAACCAGAGATGGAGCATCCTAACAAGGCTTTCGGATGGGCAGCTAGGGACTCATCTGGAGTCCTGTCTCCATTCAAATTCTCTAGAAGGTACCTACACATGTATTCATTCACCATTTGTTTCTGTTTTTCATATAGTCATTTGCTTGCTATAACAATAAAAGCTTATCAACAAGGTTTCCTTTTACCTTCATCAAGCATGGCTGATACACTGATACTTTTACCTCATGGTGTTTGAGTTAATTTTAATGTATCCCCTATATATTTTATTTAAACATTGTAATTTAAAGTTTTTCTTTTTCTTTTATACCTCCATCGCATCAAATTTTAAAATTAAAGATAATTTCGATCCATACCATTTGGGTAAATTTTTATATACCCCACTTAACTCAACACAAATTTTGTAAAATCATATTTCACAAAGGTTTAAAAGTAAATAATCATTTAATTACAAAATTGGCATCTAAATTTTTTTTACGGATGGCAAACTGGAATTTGCTCCATTAACATGGGACAAAAGTACATCTAACCTTGATATTTTTATTAAAAATGATATTTTCATATGTCTAAGGAGTAATTTGAACATCATCGTTTGATACATATACAAATACCCCACATCTTGTTTGTTTGTTTATTTTTCTTGGAGTCCCCACATCGTTTGGGGACTAAAAGTCGAAAAAATATTTAGAGGGACTAAAACGAAAAGTTGATATATTTATAAGGACTAAAAATATATTTAATCCAATATTGTATGAACTAGTCAGCAAAAGTTAACACCAAATCAATTTGAACTTGATACATTAAAAGAAGAACGTTTCAAGATCTCAAACATACACGACTAAATTATCCCATTGTTGATTGGCTTGTAACTTCCATAATTTAAGTTTTTAAGAAGGAAAAAAATGTATAAATTTTAAAAGATAAAACTAAAGATCGGACGAGGAGGGACAATATAAATAGAGTTTATTGATGGTGGATCGACACTACAAAACAACTTTGTACACACGTCCAATCAAAATATTTAGAATTTACTACATCAATTAATGTTTTTAATTTATGTTACAATTGCAAAATTGATATAGGCGTATTATCTTTTAAAAAAAATATGGGTGTAATAAAAATATGGGCATATTAATTTAAAGTTGATATAGACTTATGGACAAGTTAACATGACCCTTATTAATAATATACAAAACATAATTGACATAAAATTATTGGCATATATATTGGGAAAAACCCAAGTCCCTCAAATTGGTGATTTTCCCCATTTTGAGTTTGAGGGGGACTACTAGAGTATAGTGAGAAGATAACTTGGAGAGCAAGCAATCTAGTAGAAAGTTAGTTAGGGAGTTAGTTACTCCAAGTCACTATAAATAAGCTACACCTATGTACTATTTCACTATCTTTTATACAATTGTTTCTTGGTAATGACTCCTAGAGAGAATTACACAATCTATCTTTCCATTGCATTTGACCTAGAACCATGGAATCCTCTGATTCATAACATGGTATCAGAGCTTTATGGAGATAGCGATTTTGATCCAGTTTCTGATGAAGAAGAAGATTCCAATGGTGATGAAGAAGAAGATCTTGAAGCTTCCGCATCAGCAATCTTGTGTTCTTCCGCTTCGCAAATTTCAGTTGTTTTCGGTAGCTTTGGCGGTTCCGTTTCCACTCACGTTTCTTCACCATGGATCGCACCAGAAACTGATGGATTCACCATCAAGATCGGTGACGTTCCTAGTTTTCTCGTTGATTCACATTGCAGCGATCGCAACTCTGTTTTTGACGCTTCGGAAGAAAACTAGAAAACACCGATTCTTGATTCGGAGTTGATCGTTTTTGCCAAATCAACGAATTCAAACAATCGCGAATCTGAGTTCACAGTTTCTGAAGCCGCAATCAAGAATTCGAAGCATCTCATCATCGATACTGTTTTCTCATGCTATGGACCTGTTTACGACGCTTCTGTCTTCGTCGGAAAACAGGCTGAACAACTTGTTTTCACCGTTAGCAATCAGCTTCACGTTTTCGAATTACATGACGAATCAATCGTCGATTTTGATCCCGGTGGAAGAATTGGTCTGTGTTCGCTGCTGTCAGTTTTCAACGTTCTCCGACAAATTCGTTTTCGTTTGTGGGGGATCCCTTGGGATAGAGGAAAGAACTGCTTGCCTTCGTTTGATTCACACAGTTATCGCGAGGGAGGATGTATTGTTTCACAATCGCAATTCAGAATCTTAACAGATCAAGAACCAGAACTGCATCATTTTGTTCTTCAATTTCAAGGACTCATAGTTCAGCAGTGAAAAGCGATTTCGCTTCAAATTGGCTTCGAACATCAGTCTCAAATAATCACAGTTCTGAATGTGTCTGGGTGCAATGGAATTTCGTTATTCCACTATTGTTGTTGAACGACAGTGATATGGTTTGTAGAATCACGTTTGCAGCACCTTGTTCTCAGAGTCATGTTTACATAATTGCTTTTGCAGCATCGTGTTACAGAAGCGTCTTGGAGAGTTCGGTTCAGATTTTGGAAAAGCTAGTTTAGGACAAACGTGTTTTGCATAAGGCATATGTTGTTTTGGTTGAATAAAACGCATTCCAGAAACGCGTTTTTTTAGATAAGCTGTTTTGGTTCAGATATGGCATTTTCGTGTTTGCAGAAAGCGCGTTTAAGAAAGCTACTGGAATTGCATTTTCAAGGAGCAAAGTCTTGCTGCATTCACAACTCCTCTCAGCTTTCGTTTTGGGCCTGCGCTTGCTCAACATCTCTGGATTCCATCTTGAGCTTCTATTGTTTTCTATCAGTGTTTTGTTTTTACTAGTGTACCTTAGTTTTTATTTAGTTACTACATTATATCTAATCAAAGTGTGTTGTCATTGTATTTCAAACTCAAATTGGTAAAATTTCCACTTTGAGTTTGATGGGGACTATTAGAGTATAGAACGAATAAACTAGAGTTACTTAGTGGTAACTATAGTAGAAAGTTAGTTAGGGAGTTAGTTACTCCAAATCACTATAAATAAGCTGCACCTATGTACTATTTCACATTTTTATTCATTTGTATCTTTGTAATGACTCCTAGAGAGAATTACATAATCTACCTTTCCATTGCATTTGACCTAGAACCATGGAATCCTCTGATTCATAACACTATAGATCTGAGAGCAACAAAACAAAATTCAAATTGATAATTAATTATGTTAAGAAATGGTTAATGAGTATAACTCGTGTAAATATTCAATTAATCATAATCGTATTATATTAATCACTAATTTTAGCTTGATTCACCGAGATTTTTTTATATGTTTAAATCTATAGGTAGATTTTTTTTCTAATTCAATCTATGTGTTGGTGAACTGTTGAAAATTATAGTTAATCATGTTCAAATTCGTAGTTATAATAAAGTTATTAATCATCTATTGAATATTAAACACGTAATTGAACGGTGTTAATTGTAAAAGTTGTTTAGATTTAGGTGTGCAAAAATCATTTCATTTATTTGGATGATAAAATAAAACAAAACATTTTTTTTTGAAGGAAAAACAAAACATATTATGATTGATGACATGTGATGTCAAATGTTGATTTTATTTTCCTATACTATAAAAATACATAATGTTGTTGTTGCTTTTCAGGGAAACAGGAGAAAAAGATGTGGCATTCAAAGTACTATATTGTGGTATTTGTCATTCGGATCTCCACATGCTGAAGAACGAGTGGGGCAGTTCTATTTACCCTTTAGTTCCCGGGTACTCTTAACATCATAAAACAAACTAAATTTTATTTTTCAATTATTTAAACAAAACTCCATCACAAAATAATCTTTTCCCTTTCTCTATTATGTAAAGGCATGAAGTTTCTGGTGAAGTGACAAAGGTGGGAAGCAAGGTGACAAAGTTCAAAGTTGGAGACACGGTAGGTGTGGGGTGCATGGTTGGATCCTGCCACTCATGTCAAAGTTGTGGTGATGATCTCGAGAATTACTGTTCAAAGATGATTCTCACATATGGCGCCAAGAATATTGATGGAACAATCACATATGGAGGCTACTCTGATACCATGGTTGCCGACGAACACTTCGTGATCCGTATTCCTGATGCCTTACCACTTGATGCCGTTGCTCCTCTTCTTTGCGCGGGGATCACAGTGTATAGCCCGTTGAAATATTTTGAACTTAACAAGCCTGGTTTACATGTGGGTGTGGTTGGTCTTGGTGGATTAGGTCATATGGCTGTGAAATTTGCTAAAGCTTTTGGTGCTCATGTAACAGTGATAAGCACTTCTCCTAACAAAAAGAAGGAAGCCATTGAACATTTAGGAGCTGACTCATTTGTGGTTAGCCACGAACAAGACCAAATGCAGGTGCATACCAATAGCTCGCTTTTAATAACTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGATTCTCATTTTTTTTTTAAAATTCCATAAAAAACAAATGAAAACTTTTGAAAGTGATTATTTTAAAAGAATGTGATTTATATATTGAAAAAATATATTGTAACAAACGGGCTCTTAAGTCAGTCACTTAATAGAGATTTTTTTTGTGATATATATATTATGTGACAAATGTGAAATCAGTTATACTCTTCTAACATTGTTCATTATGTTATAGGCTGCAATGGGCACCTTTGATGGTATTATTGACACTGTTTCAGCACTCCATCCACTAATGCCTTTGATGGGTTTATTGAAGAATCATGGTAAACTTGTTATAGTTGGAGCTCCAGAGAAGCCTTTGGAGCTTCCCGCATTTTCTTTAATTGGAGGTAAGCGTATAAAAAAAACAATGTCATATACAGATATTATACCCTATATTAAAACATATTTTAAGAAAGTTGTCAATTCTTCAAAATGCTGGCAGGGAGAAAGATGATTGGCGGGAGTATGATTGGAGGGATAAAGGAGACACAAGAAATGATTAATTTTGCAGCCAAACATGGTGTGAAACCTAACATTGAGGTTATTCCAATAGATTATGTGAATAGTGCAATGGATCGCCTACTCAAAGCTGATGTGAAATATCGATTTGTTATTGACATTGGAAACACGTTGAAAGCAAGCTCTTGA

Protein sequence

>MS.gene068621.t1

MALQPEMEHPNKAFGWAARDSSGVLSPFKFSRRETGEKDVAFKVLYCGICHSDLHMLKNEWGSSIYPLVPGHEVSGEVTKVGSKVTKFKVGDTVGVGCMVGSCHSCQSCGDDLENYCSKMILTYGAKNIDGTITYGGYSDTMVADEHFVIRIPDALPLDAVAPLLCAGITVYSPLKYFELNKPGLHVGVVGLGGLGHMAVKFAKAFGAHVTVISTSPNKKKEAIEHLGADSFVVSHEQDQMQAAMGTFDGIIDTVSALHPLMPLMGLLKNHGKLVIVGAPEKPLELPAFSLIGGRKMIGGSMIGGIKETQEMINFAAKHGVKPNIEVIPIDYVNSAMDRLLKADVKYRFVIDIGNTLKASS