Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068614.t1 | RHN54898.1 | 98.1 | 362 | 7 | 0 | 1 | 362 | 15 | 376 | 1.90E-207 | 731.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068614.t1 | Q9ZRF1 | 75.7 | 354 | 86 | 0 | 9 | 362 | 6 | 359 | 1.7e-164 | 580.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068614.t1 | G7KGI6 | 98.1 | 362 | 7 | 0 | 1 | 362 | 1 | 362 | 1.4e-207 | 731.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene068614 | 0.86606 | 3.76E-65 | -1.69E-46 |
| MS.gene049297 | MS.gene068614 | 0.832568 | 8.77E-56 | -1.69E-46 |
| MS.gene049681 | MS.gene068614 | 0.80381 | 2.92E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene068614 | 0.839691 | 1.36E-57 | -1.69E-46 |
| MS.gene050020 | MS.gene068614 | 0.819725 | 9.99E-53 | -1.69E-46 |
| MS.gene050128 | MS.gene068614 | 0.848319 | 6.61E-60 | -1.69E-46 |
| MS.gene050301 | MS.gene068614 | 0.828701 | 7.77E-55 | -1.69E-46 |
| MS.gene050584 | MS.gene068614 | 0.813324 | 2.71E-51 | -1.69E-46 |
| MS.gene050586 | MS.gene068614 | 0.839955 | 1.16E-57 | -1.69E-46 |
| MS.gene050807 | MS.gene068614 | 0.809197 | 2.13E-50 | -1.69E-46 |
| MS.gene051626 | MS.gene068614 | 0.813667 | 2.28E-51 | -1.69E-46 |
| MS.gene051662 | MS.gene068614 | 0.820045 | 8.44E-53 | -1.69E-46 |
| MS.gene051663 | MS.gene068614 | 0.833529 | 5.06E-56 | -1.69E-46 |
| MS.gene051789 | MS.gene068614 | 0.87174 | 5.43E-67 | -1.69E-46 |
| MS.gene051860 | MS.gene068614 | 0.824096 | 9.71E-54 | -1.69E-46 |
| MS.gene052078 | MS.gene068614 | 0.809794 | 1.59E-50 | -1.69E-46 |
| MS.gene052178 | MS.gene068614 | 0.867436 | 1.37E-65 | -1.69E-46 |
| MS.gene052287 | MS.gene068614 | 0.804779 | 1.83E-49 | -1.69E-46 |
| MS.gene052967 | MS.gene068614 | 0.803537 | 3.33E-49 | -1.69E-46 |
| MS.gene053074 | MS.gene068614 | 0.853989 | 1.66E-61 | -1.69E-46 |
| MS.gene053204 | MS.gene068614 | 0.814731 | 1.33E-51 | -1.69E-46 |
| MS.gene053630 | MS.gene068614 | 0.80456 | 2.04E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene068614 | 0.857153 | 1.98E-62 | -1.69E-46 |
| MS.gene054010 | MS.gene068614 | 0.815064 | 1.12E-51 | -1.69E-46 |
| MS.gene054011 | MS.gene068614 | 0.836248 | 1.05E-56 | -1.69E-46 |
| MS.gene054012 | MS.gene068614 | 0.837352 | 5.47E-57 | -1.69E-46 |
| MS.gene054013 | MS.gene068614 | 0.833159 | 6.26E-56 | -1.69E-46 |
| MS.gene054184 | MS.gene068614 | 0.814079 | 1.85E-51 | -1.69E-46 |
| MS.gene054185 | MS.gene068614 | 0.813741 | 2.20E-51 | -1.69E-46 |
| MS.gene054214 | MS.gene068614 | 0.876375 | 1.47E-68 | -1.69E-46 |
| MS.gene054473 | MS.gene068614 | 0.817248 | 3.64E-52 | -1.69E-46 |
| MS.gene05456 | MS.gene068614 | 0.816154 | 6.40E-52 | -1.69E-46 |
| MS.gene054596 | MS.gene068614 | 0.83377 | 4.41E-56 | -1.69E-46 |
| MS.gene054618 | MS.gene068614 | 0.812144 | 4.91E-51 | -1.69E-46 |
| MS.gene054942 | MS.gene068614 | 0.815977 | 7.01E-52 | -1.69E-46 |
| MS.gene055207 | MS.gene068614 | 0.81988 | 9.21E-53 | -1.69E-46 |
| MS.gene055277 | MS.gene068614 | 0.833053 | 6.65E-56 | -1.69E-46 |
| MS.gene055303 | MS.gene068614 | 0.812572 | 3.96E-51 | -1.69E-46 |
| MS.gene055422 | MS.gene068614 | 0.844789 | 6.08E-59 | -1.69E-46 |
| MS.gene055428 | MS.gene068614 | 0.849334 | 3.46E-60 | -1.69E-46 |
| MS.gene055604 | MS.gene068614 | 0.857472 | 1.59E-62 | -1.69E-46 |
| MS.gene055712 | MS.gene068614 | 0.807832 | 4.17E-50 | -1.69E-46 |
| MS.gene056069 | MS.gene068614 | -0.834707 | 2.57E-56 | -1.69E-46 |
| MS.gene056612 | MS.gene068614 | 0.805076 | 1.59E-49 | -1.69E-46 |
| MS.gene056629 | MS.gene068614 | 0.807748 | 4.34E-50 | -1.69E-46 |
| MS.gene056772 | MS.gene068614 | 0.869148 | 3.85E-66 | -1.69E-46 |
| MS.gene056875 | MS.gene068614 | 0.800758 | 1.24E-48 | -1.69E-46 |
| MS.gene056931 | MS.gene068614 | 0.807561 | 4.76E-50 | -1.69E-46 |
| MS.gene056933 | MS.gene068614 | 0.810994 | 8.74E-51 | -1.69E-46 |
| MS.gene05702 | MS.gene068614 | 0.813449 | 2.54E-51 | -1.69E-46 |
| MS.gene057121 | MS.gene068614 | 0.82181 | 3.31E-53 | -1.69E-46 |
| MS.gene057245 | MS.gene068614 | 0.81403 | 1.90E-51 | -1.69E-46 |
| MS.gene057260 | MS.gene068614 | 0.800955 | 1.13E-48 | -1.69E-46 |
| MS.gene057439 | MS.gene068614 | 0.835568 | 1.56E-56 | -1.69E-46 |
| MS.gene057469 | MS.gene068614 | 0.806381 | 8.46E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene068614 | 0.837482 | 5.06E-57 | -1.69E-46 |
| MS.gene05811 | MS.gene068614 | 0.826744 | 2.29E-54 | -1.69E-46 |
| MS.gene058168 | MS.gene068614 | 0.803889 | 2.81E-49 | -1.69E-46 |
| MS.gene058749 | MS.gene068614 | 0.820578 | 6.37E-53 | -1.69E-46 |
| MS.gene058833 | MS.gene068614 | 0.800358 | 1.50E-48 | -1.69E-46 |
| MS.gene059006 | MS.gene068614 | 0.84756 | 1.07E-59 | -1.69E-46 |
| MS.gene059228 | MS.gene068614 | 0.849924 | 2.37E-60 | -1.69E-46 |
| MS.gene059294 | MS.gene068614 | 0.813785 | 2.15E-51 | -1.69E-46 |
| MS.gene059518 | MS.gene068614 | 0.85274 | 3.78E-61 | -1.69E-46 |
| MS.gene05984 | MS.gene068614 | 0.839309 | 1.71E-57 | -1.69E-46 |
| MS.gene059894 | MS.gene068614 | 0.833129 | 6.37E-56 | -1.69E-46 |
| MS.gene059974 | MS.gene068614 | 0.80055 | 1.37E-48 | -1.69E-46 |
| MS.gene060005 | MS.gene068614 | 0.834229 | 3.38E-56 | -1.69E-46 |
| MS.gene06037 | MS.gene068614 | 0.829358 | 5.38E-55 | -1.69E-46 |
| MS.gene060476 | MS.gene068614 | 0.853159 | 2.87E-61 | -1.69E-46 |
| MS.gene060559 | MS.gene068614 | 0.819721 | 1.00E-52 | -1.69E-46 |
| MS.gene061049 | MS.gene068614 | 0.843177 | 1.65E-58 | -1.69E-46 |
| MS.gene061112 | MS.gene068614 | 0.82945 | 5.11E-55 | -1.69E-46 |
| MS.gene061113 | MS.gene068614 | 0.809112 | 2.22E-50 | -1.69E-46 |
| MS.gene061265 | MS.gene068614 | 0.832694 | 8.17E-56 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068614.t1 | MTR_5g031300 | 98.066 | 362 | 7 | 0 | 1 | 362 | 1 | 362 | 0.0 | 732 |
| MS.gene068614.t1 | MTR_5g031305 | 83.380 | 361 | 60 | 0 | 1 | 361 | 1 | 361 | 0.0 | 627 |
| MS.gene068614.t1 | MTR_5g031310 | 83.934 | 361 | 58 | 0 | 1 | 361 | 1 | 361 | 0.0 | 625 |
| MS.gene068614.t1 | MTR_5g031230 | 80.110 | 362 | 71 | 1 | 1 | 362 | 1 | 361 | 0.0 | 597 |
| MS.gene068614.t1 | MTR_4g115300 | 79.379 | 354 | 73 | 0 | 9 | 362 | 8 | 361 | 0.0 | 588 |
| MS.gene068614.t1 | MTR_5g031360 | 78.992 | 357 | 75 | 0 | 5 | 361 | 6 | 362 | 0.0 | 580 |
| MS.gene068614.t1 | MTR_5g031390 | 79.379 | 354 | 73 | 0 | 9 | 362 | 8 | 361 | 0.0 | 574 |
| MS.gene068614.t1 | MTR_5g031250 | 78.177 | 362 | 78 | 1 | 1 | 362 | 1 | 361 | 0.0 | 573 |
| MS.gene068614.t1 | MTR_5g031210 | 77.966 | 354 | 78 | 0 | 9 | 362 | 8 | 361 | 0.0 | 558 |
| MS.gene068614.t1 | MTR_5g031190 | 72.881 | 354 | 96 | 0 | 9 | 362 | 8 | 361 | 0.0 | 542 |
| MS.gene068614.t1 | MTR_5g031180 | 77.183 | 355 | 81 | 0 | 8 | 362 | 7 | 361 | 0.0 | 540 |
| MS.gene068614.t1 | MTR_8g068190 | 75.424 | 354 | 87 | 0 | 8 | 361 | 7 | 360 | 0.0 | 532 |
| MS.gene068614.t1 | MTR_8g092630 | 58.402 | 363 | 145 | 2 | 2 | 359 | 53 | 414 | 1.30e-148 | 426 |
| MS.gene068614.t1 | MTR_5g031430 | 60.580 | 345 | 136 | 0 | 15 | 359 | 14 | 358 | 3.80e-144 | 412 |
| MS.gene068614.t1 | MTR_5g031250 | 80.579 | 242 | 46 | 1 | 1 | 242 | 1 | 241 | 1.44e-136 | 389 |
| MS.gene068614.t1 | MTR_1g025950 | 55.587 | 349 | 154 | 1 | 9 | 356 | 7 | 355 | 2.82e-129 | 375 |
| MS.gene068614.t1 | MTR_1g107425 | 53.644 | 343 | 159 | 0 | 12 | 354 | 9 | 351 | 1.19e-122 | 358 |
| MS.gene068614.t1 | MTR_2g009810 | 52.890 | 346 | 161 | 2 | 15 | 359 | 62 | 406 | 1.07e-115 | 342 |
| MS.gene068614.t1 | MTR_1g107425 | 55.072 | 276 | 124 | 0 | 12 | 287 | 9 | 284 | 9.87e-98 | 292 |
| MS.gene068614.t1 | MTR_2g009820 | 51.073 | 233 | 109 | 2 | 131 | 359 | 23 | 254 | 2.90e-61 | 197 |
| MS.gene068614.t1 | MTR_5g031290 | 61.151 | 139 | 50 | 1 | 227 | 361 | 55 | 193 | 7.91e-52 | 171 |
| MS.gene068614.t1 | MTR_5g031290 | 85.185 | 81 | 10 | 2 | 1 | 80 | 1 | 80 | 8.15e-42 | 145 |
| MS.gene068614.t1 | MTR_8g095220 | 26.510 | 298 | 187 | 8 | 11 | 280 | 51 | 344 | 3.03e-20 | 91.7 |
| MS.gene068614.t1 | MTR_8g095220 | 28.516 | 256 | 156 | 7 | 11 | 243 | 51 | 302 | 4.01e-20 | 90.1 |
| MS.gene068614.t1 | MTR_0001s0660 | 27.483 | 302 | 191 | 9 | 39 | 317 | 35 | 331 | 1.20e-17 | 84.3 |
| MS.gene068614.t1 | MTR_6g466320 | 25.818 | 275 | 181 | 7 | 26 | 288 | 29 | 292 | 1.12e-16 | 80.9 |
| MS.gene068614.t1 | MTR_6g465010 | 25.818 | 275 | 181 | 7 | 26 | 288 | 29 | 292 | 1.12e-16 | 80.9 |
| MS.gene068614.t1 | MTR_6g465010 | 25.818 | 275 | 181 | 7 | 26 | 288 | 13 | 276 | 1.13e-16 | 80.5 |
| MS.gene068614.t1 | MTR_3g089940 | 21.958 | 378 | 254 | 12 | 1 | 345 | 1 | 370 | 1.08e-13 | 72.0 |
| MS.gene068614.t1 | MTR_3g089940 | 21.958 | 378 | 254 | 12 | 1 | 345 | 1 | 370 | 1.44e-13 | 71.6 |
| MS.gene068614.t1 | MTR_7g068320 | 26.301 | 346 | 205 | 12 | 40 | 344 | 48 | 384 | 1.52e-13 | 71.6 |
| MS.gene068614.t1 | MTR_3g089977 | 21.751 | 377 | 253 | 13 | 12 | 355 | 12 | 379 | 1.56e-13 | 71.6 |
| MS.gene068614.t1 | MTR_3g099460 | 27.937 | 315 | 185 | 14 | 40 | 320 | 44 | 350 | 3.15e-13 | 70.5 |
| MS.gene068614.t1 | MTR_3g099460 | 27.937 | 315 | 185 | 14 | 40 | 320 | 37 | 343 | 3.32e-13 | 70.5 |
| MS.gene068614.t1 | MTR_7g099040 | 25.490 | 357 | 223 | 15 | 2 | 328 | 4 | 347 | 6.48e-13 | 69.7 |
| MS.gene068614.t1 | MTR_5g045710 | 24.024 | 333 | 222 | 8 | 39 | 343 | 35 | 364 | 2.35e-12 | 67.8 |
| MS.gene068614.t1 | MTR_1g069430 | 25.948 | 343 | 212 | 15 | 1 | 313 | 1 | 331 | 2.40e-12 | 67.8 |
| MS.gene068614.t1 | MTR_7g068330 | 27.616 | 344 | 202 | 17 | 40 | 344 | 41 | 376 | 2.72e-12 | 67.8 |
| MS.gene068614.t1 | MTR_3g089940 | 23.693 | 287 | 188 | 8 | 1 | 263 | 1 | 280 | 3.24e-12 | 67.4 |
| MS.gene068614.t1 | MTR_3g089940 | 23.693 | 287 | 188 | 8 | 1 | 263 | 1 | 280 | 3.97e-12 | 67.0 |
| MS.gene068614.t1 | MTR_3g089970 | 21.809 | 376 | 253 | 12 | 3 | 345 | 4 | 371 | 8.21e-12 | 66.2 |
| MS.gene068614.t1 | MTR_5g031380 | 58.537 | 41 | 17 | 0 | 81 | 121 | 19 | 59 | 3.63e-11 | 60.1 |
| MS.gene068614.t1 | MTR_3g099460 | 32.886 | 149 | 74 | 5 | 40 | 167 | 44 | 187 | 4.48e-11 | 63.5 |
| MS.gene068614.t1 | MTR_3g099460 | 32.886 | 149 | 74 | 5 | 40 | 167 | 37 | 180 | 4.58e-11 | 63.5 |
| MS.gene068614.t1 | MTR_3g079180 | 26.510 | 298 | 187 | 13 | 39 | 308 | 40 | 333 | 5.52e-11 | 63.9 |
| MS.gene068614.t1 | MTR_5g087710 | 26.100 | 341 | 212 | 12 | 40 | 345 | 46 | 381 | 8.90e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068614.t1 | AT4G37980 | 69.101 | 356 | 108 | 1 | 6 | 361 | 3 | 356 | 2.85e-173 | 486 |
| MS.gene068614.t1 | AT4G37990 | 68.857 | 350 | 109 | 0 | 12 | 361 | 7 | 356 | 8.02e-167 | 470 |
| MS.gene068614.t1 | AT4G37970 | 61.190 | 353 | 137 | 0 | 9 | 361 | 9 | 361 | 7.25e-163 | 460 |
| MS.gene068614.t1 | AT4G39330 | 60.340 | 353 | 140 | 0 | 8 | 360 | 7 | 359 | 3.49e-161 | 456 |
| MS.gene068614.t1 | AT2G21890 | 58.405 | 351 | 145 | 1 | 13 | 362 | 6 | 356 | 4.36e-151 | 431 |
| MS.gene068614.t1 | AT2G21730 | 58.807 | 352 | 143 | 2 | 13 | 362 | 6 | 357 | 1.97e-150 | 429 |
| MS.gene068614.t1 | AT4G37980 | 68.707 | 294 | 90 | 1 | 6 | 299 | 3 | 294 | 9.60e-135 | 386 |
| MS.gene068614.t1 | AT4G39330 | 59.322 | 295 | 120 | 0 | 8 | 302 | 7 | 301 | 5.02e-128 | 370 |
| MS.gene068614.t1 | AT4G37970 | 58.966 | 290 | 119 | 0 | 9 | 298 | 9 | 298 | 1.23e-123 | 358 |
| MS.gene068614.t1 | AT3G19450 | 54.046 | 346 | 159 | 0 | 12 | 357 | 9 | 354 | 5.69e-117 | 343 |
| MS.gene068614.t1 | AT1G72680 | 50.146 | 343 | 170 | 1 | 17 | 359 | 14 | 355 | 2.53e-113 | 334 |
| MS.gene068614.t1 | AT4G34230 | 52.586 | 348 | 165 | 0 | 7 | 354 | 3 | 350 | 6.27e-107 | 318 |
| MS.gene068614.t1 | AT4G34230 | 52.299 | 348 | 166 | 0 | 7 | 354 | 3 | 350 | 4.39e-106 | 315 |
| MS.gene068614.t1 | AT4G37970 | 59.072 | 237 | 97 | 0 | 9 | 245 | 9 | 245 | 2.70e-99 | 295 |
| MS.gene068614.t1 | AT4G37970 | 59.574 | 235 | 95 | 0 | 9 | 243 | 9 | 243 | 5.20e-99 | 294 |
| MS.gene068614.t1 | AT5G63620 | 25.685 | 292 | 187 | 7 | 16 | 280 | 58 | 346 | 1.13e-20 | 93.2 |
| MS.gene068614.t1 | AT5G63620 | 25.685 | 292 | 187 | 7 | 16 | 280 | 58 | 346 | 1.47e-20 | 92.8 |
| MS.gene068614.t1 | AT5G63620 | 28.390 | 236 | 146 | 5 | 16 | 230 | 58 | 291 | 3.77e-20 | 90.5 |
| MS.gene068614.t1 | AT1G22430 | 26.183 | 317 | 202 | 12 | 40 | 328 | 42 | 354 | 1.70e-17 | 83.6 |
| MS.gene068614.t1 | AT1G22430 | 26.183 | 317 | 202 | 12 | 40 | 328 | 42 | 354 | 1.70e-17 | 83.6 |
| MS.gene068614.t1 | AT1G64710 | 26.509 | 381 | 233 | 15 | 1 | 344 | 1 | 371 | 3.72e-17 | 82.4 |
| MS.gene068614.t1 | AT5G51970 | 26.562 | 256 | 167 | 6 | 37 | 280 | 40 | 286 | 6.90e-17 | 81.3 |
| MS.gene068614.t1 | AT5G51970 | 26.562 | 256 | 167 | 6 | 37 | 280 | 40 | 286 | 6.90e-17 | 81.3 |
| MS.gene068614.t1 | AT5G43940 | 25.964 | 389 | 239 | 16 | 1 | 353 | 1 | 376 | 1.18e-16 | 80.9 |
| MS.gene068614.t1 | AT1G64710 | 26.608 | 342 | 208 | 13 | 40 | 344 | 13 | 348 | 2.82e-16 | 79.7 |
| MS.gene068614.t1 | AT5G43940 | 26.000 | 350 | 214 | 13 | 40 | 353 | 48 | 388 | 3.80e-16 | 79.3 |
| MS.gene068614.t1 | AT1G32780 | 26.158 | 367 | 214 | 16 | 40 | 359 | 37 | 393 | 1.31e-15 | 77.8 |
| MS.gene068614.t1 | AT4G22110 | 24.927 | 341 | 215 | 16 | 40 | 344 | 43 | 378 | 1.86e-15 | 77.4 |
| MS.gene068614.t1 | AT4G22110 | 24.927 | 341 | 215 | 16 | 40 | 344 | 43 | 378 | 1.86e-15 | 77.4 |
| MS.gene068614.t1 | AT1G22430 | 26.500 | 200 | 128 | 5 | 40 | 222 | 42 | 239 | 4.82e-13 | 69.7 |
| MS.gene068614.t1 | AT1G22430 | 26.500 | 200 | 128 | 5 | 40 | 222 | 42 | 239 | 4.84e-13 | 69.3 |
| MS.gene068614.t1 | AT1G22430 | 26.500 | 200 | 128 | 5 | 40 | 222 | 42 | 239 | 4.84e-13 | 69.3 |
| MS.gene068614.t1 | AT1G22440 | 24.857 | 350 | 206 | 14 | 40 | 345 | 40 | 376 | 6.53e-13 | 69.7 |
| MS.gene068614.t1 | AT5G42250 | 25.000 | 296 | 193 | 9 | 40 | 308 | 45 | 338 | 4.88e-12 | 67.0 |
| MS.gene068614.t1 | AT1G77120 | 22.338 | 385 | 262 | 14 | 1 | 355 | 1 | 378 | 1.74e-11 | 65.5 |
| MS.gene068614.t1 | AT4G22110 | 26.267 | 217 | 138 | 9 | 40 | 237 | 43 | 256 | 2.60e-11 | 63.9 |
Find 91 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCACATGTGACTACAAATT+TGG | 0.137677 | 5.1:+21569888 | None:intergenic |
| TATCGATTTGTGATTGATAT+TGG | 0.198958 | 5.1:-21568957 | MS.gene068614:CDS |
| GCCCAACCAAAGGCCTTCTT+TGG | 0.253742 | 5.1:+21571059 | None:intergenic |
| TCCATTTATCCACTTGTTCC+TGG | 0.254331 | 5.1:-21570285 | MS.gene068614:CDS |
| CCCAGGAACAAGTGGATAAA+TGG | 0.269203 | 5.1:+21570284 | None:intergenic |
| CAAGATTGTCATTACAATCT+TGG | 0.292744 | 5.1:+21569923 | None:intergenic |
| CCACATGTGACTACAAATTT+GGG | 0.308824 | 5.1:+21569889 | None:intergenic |
| CCTGAATATACTTTAATTCA+AGG | 0.316011 | 5.1:-21569286 | MS.gene068614:intron |
| GTGAAATTTGCCAAAGCTTT+CGG | 0.316975 | 5.1:-21569643 | MS.gene068614:CDS |
| GAGTCAAGTTGGAGGGTTAA+AGG | 0.329887 | 5.1:-21569096 | MS.gene068614:CDS |
| TCTTGGTGGACTTGGCCATA+TGG | 0.337845 | 5.1:-21569668 | MS.gene068614:CDS |
| GGTTTACATATAGGTGTTGT+TGG | 0.340460 | 5.1:-21569691 | MS.gene068614:CDS |
| TATGGTACCTGAATCTGCTT+TGG | 0.345939 | 5.1:+21569529 | None:intergenic |
| CCTTGAATTAAAGTATATTC+AGG | 0.347223 | 5.1:+21569286 | None:intergenic |
| CATATAGGTGTTGTTGGTCT+TGG | 0.355070 | 5.1:-21569685 | MS.gene068614:CDS |
| CCCATTCATTCTTCGCCATA+TGG | 0.361451 | 5.1:+21570313 | None:intergenic |
| TAGTGACCCAAAGCAGATTC+AGG | 0.370893 | 5.1:-21569536 | MS.gene068614:intron |
| GTTGTTGGTCTTGGTGGACT+TGG | 0.372585 | 5.1:-21569676 | MS.gene068614:CDS |
| AACATACCTCTTGAATTTGC+TGG | 0.378852 | 5.1:-21569778 | MS.gene068614:CDS |
| CATCCTCTCTTACCAATGAT+TGG | 0.384438 | 5.1:-21569370 | MS.gene068614:CDS |
| TCCTGCAAAGTTTAAGAGCT+TGG | 0.390576 | 5.1:+21568921 | None:intergenic |
| GTTAGGCGATGTACTAATTA+CGG | 0.396532 | 5.1:+21569609 | None:intergenic |
| CCCCTTTCAATTTCTCAAGA+AGG | 0.406895 | 5.1:-21571010 | MS.gene068614:intron |
| TTAGGCTGCAATTGGTACTT+TGG | 0.409947 | 5.1:-21569422 | MS.gene068614:intron |
| CACATTAGCACCGAAAGCTT+TGG | 0.413943 | 5.1:+21569633 | None:intergenic |
| AAATATAGGCATGAGCTTGC+GGG | 0.415703 | 5.1:-21570036 | MS.gene068614:intron |
| GATAAGCCTGGTTTACATAT+AGG | 0.416506 | 5.1:-21569700 | MS.gene068614:CDS |
| GCTGGTCCTCTCCTTTGTGC+TGG | 0.419633 | 5.1:-21569760 | MS.gene068614:CDS |
| AAATCGAAGAGGACTATATA+CGG | 0.426441 | 5.1:+21569732 | None:intergenic |
| CCATTTATCCACTTGTTCCT+GGG | 0.426610 | 5.1:-21570284 | MS.gene068614:intron |
| ATAGGTGTTGTTGGTCTTGG+TGG | 0.429450 | 5.1:-21569682 | MS.gene068614:CDS |
| TCCAAAGAAGGCCTTTGGTT+GGG | 0.430490 | 5.1:-21571060 | MS.gene068614:CDS |
| GAGCATCCAAAGAAGGCCTT+TGG | 0.441279 | 5.1:-21571065 | MS.gene068614:CDS |
| CGTGATGGAACCGTCACATA+TGG | 0.443014 | 5.1:-21569856 | MS.gene068614:CDS |
| ATGGTACCTGAATCTGCTTT+GGG | 0.444222 | 5.1:+21569530 | None:intergenic |
| TCCATATGGCGAAGAATGAA+TGG | 0.444643 | 5.1:-21570314 | MS.gene068614:CDS |
| TGGCAAATTTCACAGCCATA+TGG | 0.446571 | 5.1:+21569653 | None:intergenic |
| AATTCAAGAGGTATGTTGTC+AGG | 0.452593 | 5.1:+21569784 | None:intergenic |
| GACGGTTCCATCACGATACT+TGG | 0.454045 | 5.1:+21569864 | None:intergenic |
| AAAGTGGAGAAATTTAAAGT+TGG | 0.458834 | 5.1:-21569991 | MS.gene068614:CDS |
| AACCTTCTTGAGAAATTGAA+AGG | 0.464941 | 5.1:+21571008 | None:intergenic |
| ATTGGAACAACCTCGATATC+CGG | 0.466094 | 5.1:+21569029 | None:intergenic |
| GCTGCAATTGGTACTTTGGA+TGG | 0.470582 | 5.1:-21569418 | MS.gene068614:CDS |
| TTTAAAGTTGGAGACAAAGT+AGG | 0.474364 | 5.1:-21569979 | MS.gene068614:CDS |
| ATTGGTCTCTTGAAGTCTCA+TGG | 0.481856 | 5.1:-21569352 | MS.gene068614:CDS |
| GCTGTGTTGACATAATCAAT+TGG | 0.493044 | 5.1:+21569011 | None:intergenic |
| AAAGTGCTCGTCTGCAACCA+TGG | 0.493280 | 5.1:+21569819 | None:intergenic |
| CCATATGGCGAAGAATGAAT+GGG | 0.494659 | 5.1:-21570313 | MS.gene068614:CDS |
| AGCAATGGAGCGTCTTGCTA+AGG | 0.496567 | 5.1:-21568991 | MS.gene068614:CDS |
| CATGGAAAGCTTATAATGCT+TGG | 0.504127 | 5.1:-21569334 | MS.gene068614:CDS |
| ATGTCACTCTGATCTCCATA+TGG | 0.507753 | 5.1:-21570328 | MS.gene068614:CDS |
| ATATTAGCTGGGAGTCAAGT+TGG | 0.515176 | 5.1:-21569107 | MS.gene068614:CDS |
| AGTAGTAGAGCATCCAAAGA+AGG | 0.516872 | 5.1:-21571072 | MS.gene068614:CDS |
| ACCTTCTTGAGAAATTGAAA+GGG | 0.517167 | 5.1:+21571009 | None:intergenic |
| ATCCAAAGAAGGCCTTTGGT+TGG | 0.536152 | 5.1:-21571061 | MS.gene068614:CDS |
| GAGAGGATGAACAGCTGAAA+CGG | 0.539263 | 5.1:+21569384 | None:intergenic |
| TACATCGCCTAACAAAGAAA+AGG | 0.540053 | 5.1:-21569599 | MS.gene068614:CDS |
| TGGGCAGCTAGAGATCCATC+TGG | 0.544091 | 5.1:-21571041 | MS.gene068614:CDS |
| TAAATATAGGCATGAGCTTG+CGG | 0.545464 | 5.1:-21570037 | MS.gene068614:intron |
| GTATATTCAGGAAGCTGCAA+AGG | 0.546317 | 5.1:+21569298 | None:intergenic |
| CTCCACTTTACTTCCCACTT+CGG | 0.546580 | 5.1:+21570005 | None:intergenic |
| AACCGAAGTGGGAAGTAAAG+TGG | 0.553032 | 5.1:-21570007 | MS.gene068614:CDS |
| CTCGTCTGCAACCATGGAGT+CGG | 0.560041 | 5.1:+21569825 | None:intergenic |
| GACTTCAAGAGACCAATCAT+TGG | 0.565239 | 5.1:+21569358 | None:intergenic |
| GCAATGGAGCGTCTTGCTAA+GGG | 0.567348 | 5.1:-21568990 | MS.gene068614:CDS |
| GGCAGAACACAATGTAAAGC+CGG | 0.571570 | 5.1:-21569048 | MS.gene068614:CDS |
| ATCTCTAGCTGCCCAACCAA+AGG | 0.580130 | 5.1:+21571049 | None:intergenic |
| AAAACATACCCAGGAACAAG+TGG | 0.582294 | 5.1:+21570276 | None:intergenic |
| TGGAGGTTACTCCGACTCCA+TGG | 0.586646 | 5.1:-21569836 | MS.gene068614:CDS |
| AGTTGGAGACAAAGTAGGTG+TGG | 0.589771 | 5.1:-21569974 | MS.gene068614:CDS |
| AGACCAATCATTGGTAAGAG+AGG | 0.590479 | 5.1:+21569367 | None:intergenic |
| AAGGAAGCAATAGAACACTT+AGG | 0.590978 | 5.1:-21569580 | MS.gene068614:CDS |
| AAAGGGGAGAGAACACCAGA+TGG | 0.597060 | 5.1:+21571026 | None:intergenic |
| TGATTATGTCAACACAGCAA+TGG | 0.603631 | 5.1:-21569006 | MS.gene068614:CDS |
| CAATGTAAAGCCGGATATCG+AGG | 0.604709 | 5.1:-21569039 | MS.gene068614:CDS |
| CCTTCTTGAGAAATTGAAAG+GGG | 0.611092 | 5.1:+21571010 | None:intergenic |
| GTTGGAGACAAAGTAGGTGT+GGG | 0.615995 | 5.1:-21569973 | MS.gene068614:CDS |
| TAGCTGGGAGTCAAGTTGGA+GGG | 0.620945 | 5.1:-21569103 | MS.gene068614:CDS |
| GCGGGTGTAGTAACCGAAGT+GGG | 0.625376 | 5.1:-21570018 | MS.gene068614:CDS |
| TTAGCTGGGAGTCAAGTTGG+AGG | 0.628577 | 5.1:-21569104 | MS.gene068614:CDS |
| TGCGGGTGTAGTAACCGAAG+TGG | 0.637661 | 5.1:-21570019 | MS.gene068614:CDS |
| ACAACACCTATATGTAAACC+AGG | 0.637734 | 5.1:+21569694 | None:intergenic |
| CCCAAATTTGTAGTCACATG+TGG | 0.638631 | 5.1:-21569889 | MS.gene068614:CDS |
| AGAGGACCAGCAAATTCAAG+AGG | 0.642176 | 5.1:+21569772 | None:intergenic |
| GATGGAACCGTCACATATGG+AGG | 0.644175 | 5.1:-21569853 | MS.gene068614:CDS |
| TGTGGTGCCAAGTATCGTGA+TGG | 0.659003 | 5.1:-21569871 | MS.gene068614:CDS |
| GGAGTAACCTCCATATGTGA+CGG | 0.672635 | 5.1:+21569846 | None:intergenic |
| CACATGTGACTACAAATTTG+GGG | 0.672670 | 5.1:+21569890 | None:intergenic |
| GTGACACCAGCACAAAGGAG+AGG | 0.674659 | 5.1:+21569754 | None:intergenic |
| CATATGGCGAAGAATGAATG+GGG | 0.702857 | 5.1:-21570312 | MS.gene068614:CDS |
| ATACGGTGACACCAGCACAA+AGG | 0.718821 | 5.1:+21569749 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAACAAAGATAATAAAA+AGG | + | chr5.1:21569776-21569795 | None:intergenic | 10.0% |
| !! | TTAATTTCATATTATTGATA+GGG | - | chr5.1:21570885-21570904 | MS.gene068614:intron | 10.0% |
| !!! | AATACTATTGATAATTTTTT+AGG | - | chr5.1:21570581-21570600 | MS.gene068614:intron | 10.0% |
| !! | CAAAATAAATAAGAATAGAT+CGG | - | chr5.1:21569243-21569262 | MS.gene068614:intron | 15.0% |
| !! | CATAGATCTAAATAATTTAA+AGG | + | chr5.1:21569580-21569599 | None:intergenic | 15.0% |
| !! | GTAATTGATGTAATAAATAT+AGG | - | chr5.1:21569971-21569990 | MS.gene068614:CDS | 15.0% |
| !! | GTTAATTTCATATTATTGAT+AGG | - | chr5.1:21570884-21570903 | MS.gene068614:intron | 15.0% |
| !!! | GTTTAATTTAGATGTAATTT+TGG | + | chr5.1:21569459-21569478 | None:intergenic | 15.0% |
| !! | AAAAGATTAAAACAAGGAAT+TGG | - | chr5.1:21569156-21569175 | MS.gene068614:intron | 20.0% |
| !! | ACTGATAAAAGATTAAAACA+AGG | - | chr5.1:21569150-21569169 | MS.gene068614:intron | 20.0% |
| !! | ATTATTTAGATCTATGTTTC+TGG | - | chr5.1:21569584-21569603 | MS.gene068614:CDS | 20.0% |
| !! | CAAATGAATTACATATTGTA+TGG | + | chr5.1:21570513-21570532 | None:intergenic | 20.0% |
| !! | GATACTAATTAATTCAACTT+TGG | - | chr5.1:21569606-21569625 | MS.gene068614:CDS | 20.0% |
| !! | TAATATTTCTTGAATGTGTT+TGG | - | chr5.1:21569218-21569237 | MS.gene068614:intron | 20.0% |
| !!! | CGATCTATTCTTATTTATTT+TGG | + | chr5.1:21569245-21569264 | None:intergenic | 20.0% |
| !!! | TTGTTTTAATCTTTTATCAG+TGG | + | chr5.1:21569151-21569170 | None:intergenic | 20.0% |
| ! | ATAATTGAACCAAACTTCAT+TGG | - | chr5.1:21569549-21569568 | MS.gene068614:CDS | 25.0% |
| ! | ATATATATATTCCCTTGGAA+TGG | - | chr5.1:21570783-21570802 | MS.gene068614:intron | 25.0% |
| ! | ATTCCAAGGGAATATATATA+TGG | + | chr5.1:21570784-21570803 | None:intergenic | 25.0% |
| ! | CCTGAATATACTTTAATTCA+AGG | - | chr5.1:21570735-21570754 | MS.gene068614:intron | 25.0% |
| ! | CCTTGAATTAAAGTATATTC+AGG | + | chr5.1:21570738-21570757 | None:intergenic | 25.0% |
| ! | GAGTATTATATTTACAGACA+TGG | + | chr5.1:21569812-21569831 | None:intergenic | 25.0% |
| ! | GTGAGCATAAAATTTATACA+TGG | + | chr5.1:21570859-21570878 | None:intergenic | 25.0% |
| ! | TAAATAAGAATAGATCGGTT+CGG | - | chr5.1:21569248-21569267 | MS.gene068614:intron | 25.0% |
| ! | TTTATCAGTGGAAAAAGAAA+AGG | + | chr5.1:21569139-21569158 | None:intergenic | 25.0% |
| ! | TTTCCATATATATATTCCCT+TGG | - | chr5.1:21570778-21570797 | MS.gene068614:intron | 25.0% |
| !! | AAAGTGGAGAAATTTAAAGT+TGG | - | chr5.1:21570030-21570049 | MS.gene068614:CDS | 25.0% |
| !! | AAGAATGTATGATGATAATG+CGG | + | chr5.1:21569482-21569501 | None:intergenic | 25.0% |
| !! | GGCAAAAAATAATTCTAGTT+TGG | + | chr5.1:21569527-21569546 | None:intergenic | 25.0% |
| !! | GTCACTAATTTTTAATGATG+TGG | + | chr5.1:21569298-21569317 | None:intergenic | 25.0% |
| !!! | AACTAACAGATTTTAAGTAG+AGG | + | chr5.1:21569374-21569393 | None:intergenic | 25.0% |
| !!! | AATTCTAGTTTGGTTCATTT+TGG | + | chr5.1:21569517-21569536 | None:intergenic | 25.0% |
| !!! | ATAATTTTTTAGGCTGCAAT+TGG | - | chr5.1:21570591-21570610 | MS.gene068614:intron | 25.0% |
| !!! | TATCGATTTGTGATTGATAT+TGG | - | chr5.1:21571064-21571083 | MS.gene068614:CDS | 25.0% |
| !!! | TCAAGAAATGATTGATTTTG+CGG | - | chr5.1:21570952-21570971 | MS.gene068614:intron | 25.0% |
| AAATCGAAGAGGACTATATA+CGG | + | chr5.1:21570292-21570311 | None:intergenic | 30.0% | |
| AACCTTCTTGAGAAATTGAA+AGG | + | chr5.1:21569016-21569035 | None:intergenic | 30.0% | |
| AATTTCCTTGAAACTAGTAG+TGG | + | chr5.1:21569106-21569125 | None:intergenic | 30.0% | |
| ACCTTCTTGAGAAATTGAAA+GGG | + | chr5.1:21569015-21569034 | None:intergenic | 30.0% | |
| ATAGGGAGAAAAATATTAGC+TGG | - | chr5.1:21570902-21570921 | MS.gene068614:intron | 30.0% | |
| ATTTCCTTGAAACTAGTAGT+GGG | + | chr5.1:21569105-21569124 | None:intergenic | 30.0% | |
| CAAGATTGTCATTACAATCT+TGG | + | chr5.1:21570101-21570120 | None:intergenic | 30.0% | |
| GATTAAAACAAGGAATTGGA+TGG | - | chr5.1:21569160-21569179 | MS.gene068614:intron | 30.0% | |
| TAGGGAGAAAAATATTAGCT+GGG | - | chr5.1:21570903-21570922 | MS.gene068614:intron | 30.0% | |
| TGAAAAAGATGTAGCATTCA+AGG | - | chr5.1:21569654-21569673 | MS.gene068614:CDS | 30.0% | |
| ! | AACTTTTTGACACACATCAA+AGG | - | chr5.1:21569329-21569348 | MS.gene068614:CDS | 30.0% |
| ! | AGAATGTATGATGATAATGC+GGG | + | chr5.1:21569481-21569500 | None:intergenic | 30.0% |
| ! | AGCAAAAGTATATGCTACAT+TGG | + | chr5.1:21569951-21569970 | None:intergenic | 30.0% |
| ! | ATTGCTTCCTTTTCTTTGTT+AGG | + | chr5.1:21570432-21570451 | None:intergenic | 30.0% |
| ! | TGAAGTTTGGTTCAATTATG+AGG | + | chr5.1:21569548-21569567 | None:intergenic | 30.0% |
| ! | TTTAAAGTTGGAGACAAAGT+AGG | - | chr5.1:21570042-21570061 | MS.gene068614:intron | 30.0% |
| !! | CATTCAAGGTTTTGTATTGT+GGG | - | chr5.1:21569668-21569687 | MS.gene068614:CDS | 30.0% |
| !! | TTTGGTGCACCAAAATTTTA+GGG | - | chr5.1:21569624-21569643 | MS.gene068614:CDS | 30.0% |
| !!! | TATAGTCCTCTTCGATTTTT+TGG | - | chr5.1:21570294-21570313 | MS.gene068614:CDS | 30.0% |
| AACATACCTCTTGAATTTGC+TGG | - | chr5.1:21570243-21570262 | MS.gene068614:intron | 35.0% | |
| AAGGAAGCAATAGAACACTT+AGG | - | chr5.1:21570441-21570460 | MS.gene068614:intron | 35.0% | |
| ACAACACCTATATGTAAACC+AGG | + | chr5.1:21570330-21570349 | None:intergenic | 35.0% | |
| ACCACATGTGACTACAAATT+TGG | + | chr5.1:21570136-21570155 | None:intergenic | 35.0% | |
| CACATGTGACTACAAATTTG+GGG | + | chr5.1:21570134-21570153 | None:intergenic | 35.0% | |
| CATGGAAAGCTTATAATGCT+TGG | - | chr5.1:21570687-21570706 | MS.gene068614:intron | 35.0% | |
| CCACATGTGACTACAAATTT+GGG | + | chr5.1:21570135-21570154 | None:intergenic | 35.0% | |
| CCTTCTTGAGAAATTGAAAG+GGG | + | chr5.1:21569014-21569033 | None:intergenic | 35.0% | |
| GATAAGCCTGGTTTACATAT+AGG | - | chr5.1:21570321-21570340 | MS.gene068614:CDS | 35.0% | |
| GTGAAATTTGCCAAAGCTTT+CGG | - | chr5.1:21570378-21570397 | MS.gene068614:CDS | 35.0% | |
| GTTAGGCGATGTACTAATTA+CGG | + | chr5.1:21570415-21570434 | None:intergenic | 35.0% | |
| TAAATATAGGCATGAGCTTG+CGG | - | chr5.1:21569984-21570003 | MS.gene068614:CDS | 35.0% | |
| TACATCGCCTAACAAAGAAA+AGG | - | chr5.1:21570422-21570441 | MS.gene068614:intron | 35.0% | |
| TGATTATGTCAACACAGCAA+TGG | - | chr5.1:21571015-21571034 | MS.gene068614:CDS | 35.0% | |
| TTTCCTTGAAACTAGTAGTG+GGG | + | chr5.1:21569104-21569123 | None:intergenic | 35.0% | |
| ! | AATTCAAGAGGTATGTTGTC+AGG | + | chr5.1:21570240-21570259 | None:intergenic | 35.0% |
| ! | CACCTGTTTCCCTAAAATTT+TGG | + | chr5.1:21569636-21569655 | None:intergenic | 35.0% |
| ! | GCTGTGTTGACATAATCAAT+TGG | + | chr5.1:21571013-21571032 | None:intergenic | 35.0% |
| ! | GGTTTACATATAGGTGTTGT+TGG | - | chr5.1:21570330-21570349 | MS.gene068614:CDS | 35.0% |
| !! | CACCAAAATTTTAGGGAAAC+AGG | - | chr5.1:21569631-21569650 | MS.gene068614:CDS | 35.0% |
| !! | CTTTGGTGCACCAAAATTTT+AGG | - | chr5.1:21569623-21569642 | MS.gene068614:CDS | 35.0% |
| !! | GCATTCAAGGTTTTGTATTG+TGG | - | chr5.1:21569667-21569686 | MS.gene068614:CDS | 35.0% |
| AAAACATACCCAGGAACAAG+TGG | + | chr5.1:21569748-21569767 | None:intergenic | 40.0% | |
| AAATATAGGCATGAGCTTGC+GGG | - | chr5.1:21569985-21570004 | MS.gene068614:CDS | 40.0% | |
| AAGGAGTTCAAAACATACCC+AGG | + | chr5.1:21569757-21569776 | None:intergenic | 40.0% | |
| AGACCAATCATTGGTAAGAG+AGG | + | chr5.1:21570657-21570676 | None:intergenic | 40.0% | |
| ATATTAGCTGGGAGTCAAGT+TGG | - | chr5.1:21570914-21570933 | MS.gene068614:intron | 40.0% | |
| ATATTCCCTTGGAATGGTTC+AGG | - | chr5.1:21570789-21570808 | MS.gene068614:intron | 40.0% | |
| ATGGTACCTGAATCTGCTTT+GGG | + | chr5.1:21570494-21570513 | None:intergenic | 40.0% | |
| ATGTCACTCTGATCTCCATA+TGG | - | chr5.1:21569693-21569712 | MS.gene068614:CDS | 40.0% | |
| ATTGGAACAACCTCGATATC+CGG | + | chr5.1:21570995-21571014 | None:intergenic | 40.0% | |
| CATATGGCGAAGAATGAATG+GGG | - | chr5.1:21569709-21569728 | MS.gene068614:CDS | 40.0% | |
| CATCCTCTCTTACCAATGAT+TGG | - | chr5.1:21570651-21570670 | MS.gene068614:intron | 40.0% | |
| CCATATGGCGAAGAATGAAT+GGG | - | chr5.1:21569708-21569727 | MS.gene068614:CDS | 40.0% | |
| CCATTTATCCACTTGTTCCT+GGG | - | chr5.1:21569737-21569756 | MS.gene068614:CDS | 40.0% | |
| CCCAAATTTGTAGTCACATG+TGG | - | chr5.1:21570132-21570151 | MS.gene068614:intron | 40.0% | |
| CCCCTTTCAATTTCTCAAGA+AGG | - | chr5.1:21569011-21569030 | MS.gene068614:CDS | 40.0% | |
| GACTTCAAGAGACCAATCAT+TGG | + | chr5.1:21570666-21570685 | None:intergenic | 40.0% | |
| GTATATTCAGGAAGCTGCAA+AGG | + | chr5.1:21570726-21570745 | None:intergenic | 40.0% | |
| TATGGTACCTGAATCTGCTT+TGG | + | chr5.1:21570495-21570514 | None:intergenic | 40.0% | |
| TCCATATGGCGAAGAATGAA+TGG | - | chr5.1:21569707-21569726 | MS.gene068614:CDS | 40.0% | |
| TCCATTTATCCACTTGTTCC+TGG | - | chr5.1:21569736-21569755 | MS.gene068614:CDS | 40.0% | |
| TCGAGTCCAAAAAATCGAAG+AGG | + | chr5.1:21570303-21570322 | None:intergenic | 40.0% | |
| TGGCAAATTTCACAGCCATA+TGG | + | chr5.1:21570371-21570390 | None:intergenic | 40.0% | |
| TTAGGCTGCAATTGGTACTT+TGG | - | chr5.1:21570599-21570618 | MS.gene068614:intron | 40.0% | |
| TTCCTTGAAACTAGTAGTGG+GGG | + | chr5.1:21569103-21569122 | None:intergenic | 40.0% | |
| TTTCTCCTGAACCATTCCAA+GGG | + | chr5.1:21570797-21570816 | None:intergenic | 40.0% | |
| ! | AGTAGTAGAGCATCCAAAGA+AGG | - | chr5.1:21568949-21568968 | MS.gene068614:CDS | 40.0% |
| ! | ATTGGTCTCTTGAAGTCTCA+TGG | - | chr5.1:21570669-21570688 | MS.gene068614:intron | 40.0% |
| ! | TTTTCTCCTGAACCATTCCA+AGG | + | chr5.1:21570798-21570817 | None:intergenic | 40.0% |
| !! | AAGGTGTTGCCAATGAAGTT+TGG | + | chr5.1:21569561-21569580 | None:intergenic | 40.0% |
| !! | AAGTAGAGGCATCAAGATGT+TGG | + | chr5.1:21569360-21569379 | None:intergenic | 40.0% |
| !! | CATATAGGTGTTGTTGGTCT+TGG | - | chr5.1:21570336-21570355 | MS.gene068614:CDS | 40.0% |
| !!! | TTTTTTGGACTCGATAAGCC+TGG | - | chr5.1:21570309-21570328 | MS.gene068614:CDS | 40.0% |
| AACCGAAGTGGGAAGTAAAG+TGG | - | chr5.1:21570014-21570033 | MS.gene068614:CDS | 45.0% | |
| AGAGGACCAGCAAATTCAAG+AGG | + | chr5.1:21570252-21570271 | None:intergenic | 45.0% | |
| AGTTGGAGACAAAGTAGGTG+TGG | - | chr5.1:21570047-21570066 | MS.gene068614:intron | 45.0% | |
| ATCCAAAGAAGGCCTTTGGT+TGG | - | chr5.1:21568960-21568979 | MS.gene068614:CDS | 45.0% | |
| CAATGTAAAGCCGGATATCG+AGG | - | chr5.1:21570982-21571001 | MS.gene068614:intron | 45.0% | |
| CCCAGGAACAAGTGGATAAA+TGG | + | chr5.1:21569740-21569759 | None:intergenic | 45.0% | |
| CCCATTCATTCTTCGCCATA+TGG | + | chr5.1:21569711-21569730 | None:intergenic | 45.0% | |
| CTCCACTTTACTTCCCACTT+CGG | + | chr5.1:21570019-21570038 | None:intergenic | 45.0% | |
| GAGAGGATGAACAGCTGAAA+CGG | + | chr5.1:21570640-21570659 | None:intergenic | 45.0% | |
| GCTGCAATTGGTACTTTGGA+TGG | - | chr5.1:21570603-21570622 | MS.gene068614:intron | 45.0% | |
| GGAGTAACCTCCATATGTGA+CGG | + | chr5.1:21570178-21570197 | None:intergenic | 45.0% | |
| GGCAGAACACAATGTAAAGC+CGG | - | chr5.1:21570973-21570992 | MS.gene068614:intron | 45.0% | |
| GTTGGAGACAAAGTAGGTGT+GGG | - | chr5.1:21570048-21570067 | MS.gene068614:intron | 45.0% | |
| TAGTGACCCAAAGCAGATTC+AGG | - | chr5.1:21570485-21570504 | MS.gene068614:intron | 45.0% | |
| TCCAAAGAAGGCCTTTGGTT+GGG | - | chr5.1:21568961-21568980 | MS.gene068614:CDS | 45.0% | |
| ! | CACATTAGCACCGAAAGCTT+TGG | + | chr5.1:21570391-21570410 | None:intergenic | 45.0% |
| ! | TTCCCCCACTACTAGTTTCA+AGG | - | chr5.1:21569098-21569117 | MS.gene068614:CDS | 45.0% |
| !! | ATAGGTGTTGTTGGTCTTGG+TGG | - | chr5.1:21570339-21570358 | MS.gene068614:CDS | 45.0% |
| !! | GAGTCAAGTTGGAGGGTTAA+AGG | - | chr5.1:21570925-21570944 | MS.gene068614:intron | 45.0% |
| !! | TAATTAAAATATAAATGAAA+GGG | - | chr5.1:21569912-21569931 | MS.gene068614:CDS | 5.0% |
| !! | TTAATTAAAATATAAATGAA+AGG | - | chr5.1:21569911-21569930 | MS.gene068614:CDS | 5.0% |
| AAAGGGGAGAGAACACCAGA+TGG | + | chr5.1:21568998-21569017 | None:intergenic | 50.0% | |
| ATACGGTGACACCAGCACAA+AGG | + | chr5.1:21570275-21570294 | None:intergenic | 50.0% | |
| ATCTCTAGCTGCCCAACCAA+AGG | + | chr5.1:21568975-21568994 | None:intergenic | 50.0% | |
| GACGGTTCCATCACGATACT+TGG | + | chr5.1:21570160-21570179 | None:intergenic | 50.0% | |
| GAGCATCCAAAGAAGGCCTT+TGG | - | chr5.1:21568956-21568975 | MS.gene068614:CDS | 50.0% | |
| GATGGAACCGTCACATATGG+AGG | - | chr5.1:21570168-21570187 | MS.gene068614:intron | 50.0% | |
| ! | AAAGTGCTCGTCTGCAACCA+TGG | + | chr5.1:21570205-21570224 | None:intergenic | 50.0% |
| ! | AGCAATGGAGCGTCTTGCTA+AGG | - | chr5.1:21571030-21571049 | MS.gene068614:CDS | 50.0% |
| ! | CGTGATGGAACCGTCACATA+TGG | - | chr5.1:21570165-21570184 | MS.gene068614:intron | 50.0% |
| ! | GCAATGGAGCGTCTTGCTAA+GGG | - | chr5.1:21571031-21571050 | MS.gene068614:CDS | 50.0% |
| ! | TGTGGTGCCAAGTATCGTGA+TGG | - | chr5.1:21570150-21570169 | MS.gene068614:intron | 50.0% |
| !! | GTTGTTGGTCTTGGTGGACT+TGG | - | chr5.1:21570345-21570364 | MS.gene068614:CDS | 50.0% |
| !! | TAGCTGGGAGTCAAGTTGGA+GGG | - | chr5.1:21570918-21570937 | MS.gene068614:intron | 50.0% |
| !! | TCTTGGTGGACTTGGCCATA+TGG | - | chr5.1:21570353-21570372 | MS.gene068614:CDS | 50.0% |
| !! | TTAGCTGGGAGTCAAGTTGG+AGG | - | chr5.1:21570917-21570936 | MS.gene068614:intron | 50.0% |
| CTCGTCTGCAACCATGGAGT+CGG | + | chr5.1:21570199-21570218 | None:intergenic | 55.0% | |
| GCCCAACCAAAGGCCTTCTT+TGG | + | chr5.1:21568965-21568984 | None:intergenic | 55.0% | |
| GCGGGTGTAGTAACCGAAGT+GGG | - | chr5.1:21570003-21570022 | MS.gene068614:CDS | 55.0% | |
| GTGACACCAGCACAAAGGAG+AGG | + | chr5.1:21570270-21570289 | None:intergenic | 55.0% | |
| TGCGGGTGTAGTAACCGAAG+TGG | - | chr5.1:21570002-21570021 | MS.gene068614:CDS | 55.0% | |
| TGGAGGTTACTCCGACTCCA+TGG | - | chr5.1:21570185-21570204 | MS.gene068614:intron | 55.0% | |
| TGGGCAGCTAGAGATCCATC+TGG | - | chr5.1:21568980-21568999 | MS.gene068614:CDS | 55.0% | |
| GCTGGTCCTCTCCTTTGTGC+TGG | - | chr5.1:21570261-21570280 | MS.gene068614:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 21568932 | 21571111 | 21568932 | ID=MS.gene068614 |
| chr5.1 | mRNA | 21568932 | 21571111 | 21568932 | ID=MS.gene068614.t1;Parent=MS.gene068614 |
| chr5.1 | exon | 21571011 | 21571111 | 21571011 | ID=MS.gene068614.t1.exon1;Parent=MS.gene068614.t1 |
| chr5.1 | CDS | 21571011 | 21571111 | 21571011 | ID=cds.MS.gene068614.t1;Parent=MS.gene068614.t1 |
| chr5.1 | exon | 21570285 | 21570398 | 21570285 | ID=MS.gene068614.t1.exon2;Parent=MS.gene068614.t1 |
| chr5.1 | CDS | 21570285 | 21570398 | 21570285 | ID=cds.MS.gene068614.t1;Parent=MS.gene068614.t1 |
| chr5.1 | exon | 21569537 | 21570050 | 21569537 | ID=MS.gene068614.t1.exon3;Parent=MS.gene068614.t1 |
| chr5.1 | CDS | 21569537 | 21570050 | 21569537 | ID=cds.MS.gene068614.t1;Parent=MS.gene068614.t1 |
| chr5.1 | exon | 21569287 | 21569440 | 21569287 | ID=MS.gene068614.t1.exon4;Parent=MS.gene068614.t1 |
| chr5.1 | CDS | 21569287 | 21569440 | 21569287 | ID=cds.MS.gene068614.t1;Parent=MS.gene068614.t1 |
| chr5.1 | exon | 21568932 | 21569137 | 21568932 | ID=MS.gene068614.t1.exon5;Parent=MS.gene068614.t1 |
| chr5.1 | CDS | 21568932 | 21569137 | 21568932 | ID=cds.MS.gene068614.t1;Parent=MS.gene068614.t1 |
| Gene Sequence |
| Protein sequence |
