AlfalfaGEDB | MS.gene93004

M. sativa cultivar XinJiangDaYe / MS.gene93004

KEGG: K00083
GO: GO:0003674 GO:0003824 GO:0005488 GO:0008150 GO:0008152 GO:0008270 GO:0016491 GO:0043167 GO:0043169 GO:0046872 GO:0046914 GO:0055114
PFAM: PF00107.29 PF08240.15

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93004.t1	P31656.1	100	358	0	0	1	358	1	358	7.50E-204	719.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93004.t1	P31656	100.0	358	0	0	1	358	1	358	1.8e-206	719.5

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93004.t1	A0A072VPZ8	98.6	358	5	0	1	358	1	358	1.1e-201	711.8

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04918	MS.gene93004	0.801939	7.11E-49	-1.69E-46
MS.gene04920	MS.gene93004	0.805609	1.23E-49	-1.69E-46
MS.gene050646	MS.gene93004	0.81351	2.47E-51	-1.69E-46
MS.gene050737	MS.gene93004	0.812024	5.22E-51	-1.69E-46
MS.gene051209	MS.gene93004	0.803989	2.68E-49	-1.69E-46
MS.gene053931	MS.gene93004	0.80232	5.93E-49	-1.69E-46
MS.gene054892	MS.gene93004	0.803984	2.68E-49	-1.69E-46
MS.gene054893	MS.gene93004	0.80462	1.98E-49	-1.69E-46
MS.gene056699	MS.gene93004	0.809938	1.48E-50	-1.69E-46
MS.gene057174	MS.gene93004	0.808279	3.35E-50	-1.69E-46
MS.gene057371	MS.gene93004	0.807989	3.86E-50	-1.69E-46
MS.gene058292	MS.gene93004	0.808782	2.62E-50	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene93004	MS.gene069148	PPI
MS.gene93004	MS.gene28444	PPI
MS.gene93004	MS.gene068612	PPI
MS.gene93004	MS.gene008956	PPI
MS.gene93004	MS.gene027825	PPI
MS.gene93004	MS.gene02214	PPI
MS.gene93004	MS.gene027818	PPI
MS.gene93004	MS.gene027824	PPI
MS.gene93004	MS.gene069152	PPI
MS.gene93004	MS.gene070877	PPI
MS.gene93004	MS.gene90766	PPI
MS.gene93004	MS.gene070872	PPI
MS.gene93004	MS.gene036724	PPI
MS.gene93004	MS.gene01230	PPI
MS.gene93004	MS.gene58045	PPI
MS.gene93004	MS.gene068621	PPI
MS.gene068619	MS.gene93004	PPI
MS.gene93004	MS.gene069151	PPI
MS.gene93004	MS.gene070879	PPI
MS.gene068613	MS.gene93004	PPI
MS.gene068614	MS.gene93004	PPI
MS.gene027821	MS.gene93004	PPI
MS.gene93004	MS.gene027817	PPI
MS.gene93004	MS.gene030674	PPI
MS.gene58124	MS.gene93004	PPI
MS.gene93004	MS.gene048392	PPI
MS.gene93004	MS.gene070871	PPI
MS.gene002258	MS.gene93004	PPI
MS.gene93004	MS.gene069146	PPI
MS.gene93004	MS.gene070874	PPI
MS.gene93004	MS.gene46316	PPI
MS.gene93004	MS.gene068618	PPI
MS.gene93004	MS.gene070881	PPI
MS.gene002257	MS.gene93004	PPI
MS.gene93004	MS.gene068615	PPI
MS.gene93004	MS.gene068620	PPI
MS.gene93004	MS.gene027819	PPI
MS.gene93004	MS.gene069144	PPI
MS.gene93004	MS.gene069145	PPI
MS.gene93004	MS.gene070868	PPI
MS.gene068611	MS.gene93004	PPI
MS.gene93004	MS.gene070876	PPI
MS.gene93004	MS.gene70270	PPI
MS.gene93004	MS.gene070869	PPI
MS.gene93004	MS.gene027816	PPI
MS.gene93004	MS.gene069153	PPI
MS.gene93004	MS.gene027823	PPI
MS.gene93004	MS.gene069154	PPI
MS.gene93004	MS.gene027820	PPI
MS.gene93004	MS.gene069147	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93004.t1	MTR_1g107425	98.603	358	5	0	1	358	1	358	0.0	723
MS.gene93004.t1	MTR_1g107425	97.635	296	7	0	1	296	1	296	0.0	592
MS.gene93004.t1	MTR_5g031360	52.023	346	166	0	9	354	13	358	4.51e-124	361
MS.gene93004.t1	MTR_5g031190	51.312	343	167	0	9	351	11	353	5.47e-123	358
MS.gene93004.t1	MTR_5g031300	52.000	350	168	0	2	351	5	354	3.98e-122	356
MS.gene93004.t1	MTR_5g031250	52.507	339	161	0	13	351	15	353	1.24e-121	355
MS.gene93004.t1	MTR_4g115300	50.708	353	172	1	1	351	1	353	1.99e-120	352
MS.gene93004.t1	MTR_5g031310	50.729	343	169	0	9	351	12	354	2.19e-120	352
MS.gene93004.t1	MTR_5g031305	50.146	343	171	0	9	351	12	354	7.20e-120	351
MS.gene93004.t1	MTR_5g031230	52.507	339	161	0	13	351	15	353	1.37e-119	350
MS.gene93004.t1	MTR_5g031390	50.729	343	169	0	9	351	11	353	6.08e-119	348
MS.gene93004.t1	MTR_8g068190	52.478	343	163	0	9	351	11	353	1.57e-118	347
MS.gene93004.t1	MTR_5g031210	53.097	339	159	0	13	351	15	353	1.70e-116	342
MS.gene93004.t1	MTR_5g031430	51.297	347	169	0	8	354	10	356	8.14e-114	335
MS.gene93004.t1	MTR_5g031180	51.020	343	168	0	9	351	11	353	1.16e-112	332
MS.gene93004.t1	MTR_1g025950	49.280	347	175	1	9	354	10	356	5.11e-109	323
MS.gene93004.t1	MTR_8g092630	50.294	340	168	1	15	354	74	412	4.28e-107	320
MS.gene93004.t1	MTR_2g009810	44.759	353	193	2	3	354	53	404	2.26e-99	300
MS.gene93004.t1	MTR_5g031250	55.895	229	101	0	11	239	13	241	1.28e-83	254
MS.gene93004.t1	MTR_2g009820	41.463	246	138	4	114	354	8	252	2.10e-51	172
MS.gene93004.t1	MTR_5g031290	43.636	110	62	0	245	354	80	189	1.91e-26	104
MS.gene93004.t1	MTR_5g031290	52.174	69	32	1	9	76	11	79	1.21e-18	83.2
MS.gene93004.t1	MTR_8g095220	25.269	372	242	10	13	351	56	424	6.82e-24	102
MS.gene93004.t1	MTR_8g095220	28.689	244	149	6	13	234	56	296	6.52e-21	92.4
MS.gene93004.t1	MTR_5g087710	25.000	340	221	9	35	342	44	381	6.04e-13	69.7
MS.gene93004.t1	MTR_3g089977	23.582	335	226	8	37	342	37	370	4.04e-11	64.3
MS.gene93004.t1	MTR_3g089940	23.881	335	225	8	37	342	37	370	4.04e-11	64.3
MS.gene93004.t1	MTR_3g089940	23.881	335	225	8	37	342	37	370	4.15e-11	63.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93004.t1	AT3G19450	76.536	358	84	0	1	358	1	358	0.0	525
MS.gene93004.t1	AT4G34230	77.311	357	80	1	1	357	1	356	5.13e-178	498
MS.gene93004.t1	AT4G34230	77.031	357	81	1	1	357	1	356	5.96e-177	495
MS.gene93004.t1	AT2G21890	49.432	352	177	1	8	358	4	355	2.22e-121	355
MS.gene93004.t1	AT4G39330	50.877	342	168	0	13	354	15	356	2.32e-120	352
MS.gene93004.t1	AT2G21730	49.292	353	177	2	8	358	4	356	6.24e-120	351
MS.gene93004.t1	AT4G37970	48.830	342	175	0	13	354	16	357	3.57e-118	347
MS.gene93004.t1	AT4G37990	51.009	347	170	0	8	354	6	352	1.49e-113	335
MS.gene93004.t1	AT4G37980	47.839	347	181	0	8	354	6	352	7.60e-108	320
MS.gene93004.t1	AT1G72680	43.503	354	199	1	1	354	1	353	1.51e-97	293
MS.gene93004.t1	AT4G39330	49.481	289	146	0	13	301	15	303	1.31e-96	290
MS.gene93004.t1	AT4G37970	47.857	280	146	0	13	292	16	295	2.03e-89	271
MS.gene93004.t1	AT4G37980	48.239	284	146	1	8	290	6	289	1.04e-82	254
MS.gene93004.t1	AT4G37970	50.000	228	114	0	13	240	16	243	7.24e-75	232
MS.gene93004.t1	AT4G37970	50.000	228	114	0	13	240	16	243	1.10e-74	232
MS.gene93004.t1	AT5G63620	26.005	373	238	12	13	351	58	426	5.38e-24	102
MS.gene93004.t1	AT5G63620	25.737	373	239	12	13	351	58	426	8.65e-24	102
MS.gene93004.t1	AT5G63620	28.870	239	145	6	13	229	58	293	1.71e-21	94.0
MS.gene93004.t1	AT1G32780	25.439	342	215	10	37	339	37	377	4.65e-14	73.2
MS.gene93004.t1	AT1G22430	26.254	339	211	13	37	340	42	376	1.95e-13	71.2
MS.gene93004.t1	AT1G22430	26.254	339	211	13	37	340	42	376	1.95e-13	71.2
MS.gene93004.t1	AT1G64710	23.512	336	224	10	37	340	13	347	1.33e-11	65.5
MS.gene93004.t1	AT1G64710	23.512	336	224	10	37	340	36	370	1.72e-11	65.5
MS.gene93004.t1	AT4G22110	24.478	335	218	11	37	338	43	375	2.13e-11	65.1
MS.gene93004.t1	AT4G22110	24.478	335	218	11	37	338	43	375	2.13e-11	65.1

Find 87 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TACAGTCCACTTTCACATTT+TGG	0.140332	1.2:+80177874	MS.gene93004:CDS
CAGAGGAGATGTTGGAGTTT+TGG	0.195897	1.2:+80178664	MS.gene93004:CDS
CCCAGGAACCATAGGATAAT+TGG	0.245188	1.2:-80176789	None:intergenic
CATGATTGAAATTGTAACTA+TGG	0.253443	1.2:+80178707	MS.gene93004:CDS
TCCAATTATCCTATGGTTCC+TGG	0.314697	1.2:+80176788	MS.gene93004:CDS
CTTTCATTGCTCAAAATTGA+TGG	0.339894	1.2:+80178153	MS.gene93004:CDS
TGGGCTAAGAGGTGGAATAT+TGG	0.354895	1.2:+80177909	MS.gene93004:CDS
TCAATTACTGGAAGCTTTGT+TGG	0.375046	1.2:+80178627	MS.gene93004:CDS
GGGCTAAGAGGTGGAATATT+GGG	0.377765	1.2:+80177910	MS.gene93004:CDS
CATAGTTACAATTTCAATCA+TGG	0.394791	1.2:-80178706	None:intergenic
GGCTCAAGAGGGTGACCAAC+AGG	0.414159	1.2:-80178126	None:intergenic
TCTTCAATTTGTTACACCTA+TGG	0.415794	1.2:+80178209	MS.gene93004:CDS
GTAGGGAGGAAGTCAATTAC+TGG	0.421387	1.2:+80178615	MS.gene93004:intron
AAAGAGGCACTTGAGGATCT+TGG	0.422297	1.2:+80178021	MS.gene93004:CDS
TGATGGGAAATTGATCTTGA+TGG	0.430428	1.2:+80178170	MS.gene93004:CDS
AACAATGGTGCAACTTGCTC+TGG	0.430947	1.2:-80177832	None:intergenic
TGCTCTGGTGCCAATCCCTC+TGG	0.434175	1.2:-80177817	None:intergenic
CAATTACTGGAAGCTTTGTT+GGG	0.441579	1.2:+80178628	MS.gene93004:CDS
GTGAAAGTAGCAAAGGCATT+AGG	0.442216	1.2:+80177958	MS.gene93004:CDS
AGAAGAATGATGTGAGGTAT+AGG	0.457166	1.2:+80178760	MS.gene93004:CDS
TTGTTAGCTCAGATACTGTT+GGG	0.467194	1.2:+80178058	MS.gene93004:CDS
AATACTGTAACAAGAAGATC+TGG	0.467552	1.2:+80177134	MS.gene93004:CDS
CTTGTTAGCTCAGATACTGT+TGG	0.468029	1.2:+80178057	MS.gene93004:CDS
GGTTGGTGAGGTGCTAGAGG+TGG	0.474335	1.2:+80177012	MS.gene93004:CDS
TGGCATGTCCAATTATCCTA+TGG	0.476856	1.2:+80176781	MS.gene93004:CDS
GAAGGAGACAGAGGAGATGT+TGG	0.486422	1.2:+80178656	MS.gene93004:CDS
TACAATGATGTTTACACTGA+CGG	0.486763	1.2:+80177160	MS.gene93004:CDS
CTCCATACACATACACTCTC+AGG	0.487023	1.2:+80176537	MS.gene93004:CDS
TTTCATTGCTCAAAATTGAT+GGG	0.487627	1.2:+80178154	MS.gene93004:CDS
TGTGAAAATACCAGAGGGAT+TGG	0.495073	1.2:+80177807	MS.gene93004:CDS
TTGGCTGCAAAAGACCCTTC+CGG	0.496088	1.2:+80176506	MS.gene93004:CDS
CACCTGAGAGTGTATGTGTA+TGG	0.504281	1.2:-80176539	None:intergenic
TTCAGCCCAAAATGTGAAAG+TGG	0.506368	1.2:-80177880	None:intergenic
AGAGGTGGAATATTGGGTCT+TGG	0.506833	1.2:+80177916	MS.gene93004:CDS
GTTGCACCATTGTTGTGTGC+AGG	0.511420	1.2:+80177841	MS.gene93004:CDS
CTTGGTGGAGTAGGACACAT+GGG	0.512497	1.2:+80177934	MS.gene93004:CDS
TGTGTATGGAGTGAGAATTC+CGG	0.512818	1.2:-80176525	None:intergenic
GGTGGAATATTGGGTCTTGG+TGG	0.517471	1.2:+80177919	MS.gene93004:CDS
CTGAAAACACCTGGGCTAAG+AGG	0.518039	1.2:+80177898	MS.gene93004:CDS
CCAATTATCCTATGGTTCCT+GGG	0.521261	1.2:+80176789	MS.gene93004:CDS
GTGGGAGTTGGTCTTCTCGT+TGG	0.525528	1.2:+80177070	MS.gene93004:CDS
GTTCAAAGTGGGAGAAATTG+TGG	0.526442	1.2:+80177051	MS.gene93004:CDS
GTGGGAGAAATTGTGGGAGT+TGG	0.528018	1.2:+80177058	MS.gene93004:CDS
AGAAAGAACAACAGTAGGAT+TGG	0.528316	1.2:+80176487	MS.gene93004:CDS
GAAGAAGAAAGAGGCACTTG+AGG	0.529985	1.2:+80178014	MS.gene93004:CDS
TGTCAAAGGAAGTAAATTTG+AGG	0.531733	1.2:+80178794	MS.gene93004:CDS
CATACATACCCAGGAACCAT+AGG	0.538858	1.2:-80176797	None:intergenic
GATGGGAAATTGATCTTGAT+GGG	0.539815	1.2:+80178171	MS.gene93004:CDS
GTTACACCTATGGTCATGCT+AGG	0.542756	1.2:+80178219	MS.gene93004:CDS
TTCAAAGTGGGAGAAATTGT+GGG	0.545521	1.2:+80177052	MS.gene93004:CDS
ATCATTGACACTGTTCCTGT+TGG	0.558930	1.2:+80178111	MS.gene93004:CDS
ATATTGGGTCTTGGTGGAGT+AGG	0.559461	1.2:+80177925	MS.gene93004:CDS
TTCTGATAAGAAGAAGAAAG+AGG	0.560483	1.2:+80178005	MS.gene93004:CDS
AGGTGGGTTCAAATGTTACA+AGG	0.565769	1.2:+80177029	MS.gene93004:CDS
GTTGGTGAGGTGCTAGAGGT+GGG	0.571361	1.2:+80177013	MS.gene93004:CDS
AGGTTCGTTGTGGATGTCAA+AGG	0.573106	1.2:+80178780	MS.gene93004:CDS
TACATCAAAATTCATTACTG+TGG	0.582501	1.2:+80176719	MS.gene93004:CDS
TTGGTGGAGTAGGACACATG+GGG	0.596788	1.2:+80177935	MS.gene93004:CDS
AAATGTTACAAGGTTCAAAG+TGG	0.597798	1.2:+80177039	MS.gene93004:CDS
AATGTTACAAGGTTCAAAGT+GGG	0.599126	1.2:+80177040	MS.gene93004:CDS
TAGGTGTAACAAATTGAAGA+GGG	0.600517	1.2:-80178206	None:intergenic
ATAGGTGTAACAAATTGAAG+AGG	0.601584	1.2:-80178207	None:intergenic
AATATTCCACCTCTTAGCCC+AGG	0.603820	1.2:-80177907	None:intergenic
AAAACACCTGGGCTAAGAGG+TGG	0.604672	1.2:+80177901	MS.gene93004:CDS
AATGAAAGATAAGGCTCAAG+AGG	0.608696	1.2:-80178138	None:intergenic
TCTTGGTGGAGTAGGACACA+TGG	0.610428	1.2:+80177933	MS.gene93004:CDS
GCTGCAGAAAGAACAACAGT+AGG	0.613158	1.2:+80176482	MS.gene93004:CDS
TGTGAGGTATAGGTTCGTTG+TGG	0.619087	1.2:+80178770	MS.gene93004:CDS
AAGCTTTGTTGGGAGCGTGA+AGG	0.622128	1.2:+80178638	MS.gene93004:CDS
TTTGTTGTGAAAATACCAGA+GGG	0.624457	1.2:+80177802	MS.gene93004:CDS
AGTGGTTGGTGAGGTGCTAG+AGG	0.628978	1.2:+80177009	MS.gene93004:CDS
CACTGACGGAAAGATCACTC+AGG	0.632595	1.2:+80177174	MS.gene93004:CDS
CATATGCAGAAACACAGGAC+CGG	0.644502	1.2:+80176688	MS.gene93004:intron
GTCACACCTGCACACAACAA+TGG	0.650120	1.2:-80177847	None:intergenic
TGGGAGCGTGAAGGAGACAG+AGG	0.652158	1.2:+80178647	MS.gene93004:CDS
ATGAAAGATAAGGCTCAAGA+GGG	0.658619	1.2:-80178137	None:intergenic
GATTGGAGAAGAATGATGTG+AGG	0.663743	1.2:+80178754	MS.gene93004:CDS
AAAACCATATGCAGAAACAC+AGG	0.664236	1.2:+80176683	MS.gene93004:intron
GTTTGTTGTGAAAATACCAG+AGG	0.664399	1.2:+80177801	MS.gene93004:CDS
CAGGCATGAAGTGGTTGGTG+AGG	0.675201	1.2:+80177000	MS.gene93004:intron
ACTGACGGAAAGATCACTCA+GGG	0.682017	1.2:+80177175	MS.gene93004:CDS
TATGGAGTGAGAATTCCGGA+AGG	0.698628	1.2:-80176521	None:intergenic
ATGGAGTGAGAATTCCGGAA+GGG	0.705897	1.2:-80176520	None:intergenic
AAGAGCTTATCACAGTGACA+TGG	0.707377	1.2:-80177984	None:intergenic
AGGTGTAACAAATTGAAGAG+GGG	0.708980	1.2:-80178205	None:intergenic
GACGGAAAGATCACTCAGGG+TGG	0.713421	1.2:+80177178	MS.gene93004:CDS
TGGTGGAGTAGGACACATGG+GGG	0.751756	1.2:+80177936	MS.gene93004:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATAAAAGTAATTAATTTAGT+TGG	-	chr1.2:80177685-80177704	None:intergenic	10.0%
!!	TAAAAATTACTAACAAATTT+AGG	-	chr1.2:80178366-80178385	None:intergenic	10.0%
!!	TAAAAGTAATTAATTTAGTT+GGG	-	chr1.2:80177684-80177703	None:intergenic	10.0%
!!!	AATCATCAATGTTTTTTAAA+TGG	-	chr1.2:80177339-80177358	None:intergenic	15.0%
!!!	ATCATCAATGTTTTTTAAAT+GGG	-	chr1.2:80177338-80177357	None:intergenic	15.0%
!!!	ATGTTATGAAAAATGTTTTA+TGG	+	chr1.2:80177504-80177523	MS.gene93004:intron	15.0%
!!!	CTTTTAAATAACTTGTAATT+AGG	+	chr1.2:80178415-80178434	MS.gene93004:intron	15.0%
!!!	TTATTTAAAAATCTAGTTCA+AGG	+	chr1.2:80178465-80178484	MS.gene93004:intron	15.0%
!!	AGTTCACAGTAAAAAAAATA+TGG	-	chr1.2:80177647-80177666	None:intergenic	20.0%
!!	ATGTATCAAATTATTATGTC+CGG	+	chr1.2:80176877-80176896	MS.gene93004:intron	20.0%
!!	TTAAAATCTTCAATAGTCAA+GGG	-	chr1.2:80178308-80178327	None:intergenic	20.0%
!!	TTAGAAGATATCATTACAAT+TGG	-	chr1.2:80178576-80178595	None:intergenic	20.0%
!!	TTTAAACTGATTATGTGTTT+GGG	+	chr1.2:80177764-80177783	MS.gene93004:intron	20.0%
!!!	ATTAATTACTTTTATGAACC+TGG	+	chr1.2:80177690-80177709	MS.gene93004:intron	20.0%
!!!	CTTTAAGTTATTGAACAATT+TGG	-	chr1.2:80178507-80178526	None:intergenic	20.0%
!!!	TCATCAATGTTTTTTAAATG+GGG	-	chr1.2:80177337-80177356	None:intergenic	20.0%
!!!	TTATGATTGTTTTGAAAAAC+AGG	+	chr1.2:80176981-80177000	MS.gene93004:intron	20.0%
!!!	TTTAAAATCTTCAATAGTCA+AGG	-	chr1.2:80178309-80178328	None:intergenic	20.0%
!!!	TTTTAAACTGATTATGTGTT+TGG	+	chr1.2:80177763-80177782	MS.gene93004:intron	20.0%
!	AATTTAGATATGTTCGATTG+TGG	+	chr1.2:80177600-80177619	MS.gene93004:intron	25.0%
!	AGCTTAGTTAGTTATTGAAT+AGG	+	chr1.2:80178278-80178297	MS.gene93004:intron	25.0%
!	CATAGTTACAATTTCAATCA+TGG	-	chr1.2:80178709-80178728	None:intergenic	25.0%
!	CATGATTGAAATTGTAACTA+TGG	+	chr1.2:80178707-80178726	MS.gene93004:CDS	25.0%
!	CCTTAAAATTAATCGAAACA+CGG	-	chr1.2:80176919-80176938	None:intergenic	25.0%
!	GTAATTAGGTCTTGAATTTA+GGG	+	chr1.2:80178429-80178448	MS.gene93004:intron	25.0%
!	TAACAGGTGTGAAAAAAATT+GGG	-	chr1.2:80177533-80177552	None:intergenic	25.0%
!	TACATCAAAATTCATTACTG+TGG	+	chr1.2:80176719-80176738	MS.gene93004:CDS	25.0%
!	TGTAATTAGGTCTTGAATTT+AGG	+	chr1.2:80178428-80178447	MS.gene93004:intron	25.0%
!	TTAAACTGATTATGTGTTTG+GGG	+	chr1.2:80177765-80177784	MS.gene93004:intron	25.0%
!	TTAACAGGTGTGAAAAAAAT+TGG	-	chr1.2:80177534-80177553	None:intergenic	25.0%
!	TTAGTTAGTTATTGAATAGG+TGG	+	chr1.2:80178281-80178300	MS.gene93004:intron	25.0%
!	TTTCATTGCTCAAAATTGAT+GGG	+	chr1.2:80178154-80178173	MS.gene93004:CDS	25.0%
!!	ATTTTGAGCAATGAAAGATA+AGG	-	chr1.2:80178150-80178169	None:intergenic	25.0%
!!	TTTTTCATAACATAAGCGTT+TGG	-	chr1.2:80177497-80177516	None:intergenic	25.0%
!!!	ATTTTGATGTAAACATCATC+CGG	-	chr1.2:80176710-80176729	None:intergenic	25.0%
!!!	TAACAAAGCTTTTGAAAGAT+TGG	+	chr1.2:80178737-80178756	MS.gene93004:CDS	25.0%
!!!	TAATTACTTTTGTTCAACGA+CGG	-	chr1.2:80177218-80177237	None:intergenic	25.0%
	AAATGTTACAAGGTTCAAAG+TGG	+	chr1.2:80177039-80177058	MS.gene93004:CDS	30.0%
	AATACTGTAACAAGAAGATC+TGG	+	chr1.2:80177134-80177153	MS.gene93004:CDS	30.0%
	AATGTTACAAGGTTCAAAGT+GGG	+	chr1.2:80177040-80177059	MS.gene93004:CDS	30.0%
	ATAGGTGTAACAAATTGAAG+AGG	-	chr1.2:80178210-80178229	None:intergenic	30.0%
	ATCATTGATGAGAAAGAAGA+AGG	-	chr1.2:80178254-80178273	None:intergenic	30.0%
	CAAGTTTGTATGTGATTAAC+AGG	-	chr1.2:80177549-80177568	None:intergenic	30.0%
	CACCAAATCAAAAATGATCT+TGG	+	chr1.2:80176761-80176780	MS.gene93004:CDS	30.0%
	CTTTCATTGCTCAAAATTGA+TGG	+	chr1.2:80178153-80178172	MS.gene93004:CDS	30.0%
	TACAATGATGTTTACACTGA+CGG	+	chr1.2:80177160-80177179	MS.gene93004:CDS	30.0%
	TAGGTGTAACAAATTGAAGA+GGG	-	chr1.2:80178209-80178228	None:intergenic	30.0%
	TATTGATGTTGTGTTACGTA+GGG	+	chr1.2:80178598-80178617	MS.gene93004:intron	30.0%
	TGTCAAAGGAAGTAAATTTG+AGG	+	chr1.2:80178794-80178813	MS.gene93004:CDS	30.0%
	TTCTGATAAGAAGAAGAAAG+AGG	+	chr1.2:80178005-80178024	MS.gene93004:CDS	30.0%
!	CCGTGTTTCGATTAATTTTA+AGG	+	chr1.2:80176916-80176935	MS.gene93004:intron	30.0%
!	TTTGTTGTGAAAATACCAGA+GGG	+	chr1.2:80177802-80177821	MS.gene93004:CDS	30.0%
!	TTTTATGAACCTGGTGTAAA+AGG	+	chr1.2:80177699-80177718	MS.gene93004:intron	30.0%
!!	GTGTGGAATTTAATTTGACA+CGG	-	chr1.2:80177293-80177312	None:intergenic	30.0%
!!	TCTTCAATTTGTTACACCTA+TGG	+	chr1.2:80178209-80178228	MS.gene93004:CDS	30.0%
!!	TGCCAAGATCATTTTTGATT+TGG	-	chr1.2:80176766-80176785	None:intergenic	30.0%
	AAAACCATATGCAGAAACAC+AGG	+	chr1.2:80176683-80176702	MS.gene93004:intron	35.0%
	AATGAAAGATAAGGCTCAAG+AGG	-	chr1.2:80178141-80178160	None:intergenic	35.0%
	AGAAAGAACAACAGTAGGAT+TGG	+	chr1.2:80176487-80176506	MS.gene93004:CDS	35.0%
	AGAAGAATGATGTGAGGTAT+AGG	+	chr1.2:80178760-80178779	MS.gene93004:CDS	35.0%
	AGAAGTTAACATACATACCC+AGG	-	chr1.2:80176809-80176828	None:intergenic	35.0%
	AGGTGTAACAAATTGAAGAG+GGG	-	chr1.2:80178208-80178227	None:intergenic	35.0%
	ATGAAAGATAAGGCTCAAGA+GGG	-	chr1.2:80178140-80178159	None:intergenic	35.0%
	ATTGATGAGAAAGAAGAAGG+TGG	-	chr1.2:80178251-80178270	None:intergenic	35.0%
	CTATTGATGTTGTGTTACGT+AGG	+	chr1.2:80178597-80178616	MS.gene93004:intron	35.0%
	GATGGGAAATTGATCTTGAT+GGG	+	chr1.2:80178171-80178190	MS.gene93004:CDS	35.0%
	TCAGAAATGCATAAAACGTG+TGG	-	chr1.2:80177310-80177329	None:intergenic	35.0%
	TGATGGGAAATTGATCTTGA+TGG	+	chr1.2:80178170-80178189	MS.gene93004:CDS	35.0%
	TTATTATGTCCGGTGTTTGT+TGG	+	chr1.2:80176887-80176906	MS.gene93004:intron	35.0%
	TTCAAAGTGGGAGAAATTGT+GGG	+	chr1.2:80177052-80177071	MS.gene93004:CDS	35.0%
	TTGATGAGAAAGAAGAAGGT+GGG	-	chr1.2:80178250-80178269	None:intergenic	35.0%
	TTGTTAGCTCAGATACTGTT+GGG	+	chr1.2:80178058-80178077	MS.gene93004:CDS	35.0%
	TTTGAAAAACAGGCATGAAG+TGG	+	chr1.2:80176991-80177010	MS.gene93004:intron	35.0%
!	ACAGTCCACTTTCACATTTT+GGG	+	chr1.2:80177875-80177894	MS.gene93004:CDS	35.0%
!	TACAGTCCACTTTCACATTT+TGG	+	chr1.2:80177874-80177893	MS.gene93004:CDS	35.0%
!	TCAATTACTGGAAGCTTTGT+TGG	+	chr1.2:80178627-80178646	MS.gene93004:CDS	35.0%
!	TTTCTAACACCTTTTACACC+AGG	-	chr1.2:80177711-80177730	None:intergenic	35.0%
!!	CAATTACTGGAAGCTTTGTT+GGG	+	chr1.2:80178628-80178647	MS.gene93004:CDS	35.0%
!!	GTTTGTTGTGAAAATACCAG+AGG	+	chr1.2:80177801-80177820	MS.gene93004:CDS	35.0%
!!!	TTGGAGTTTTGGAAAGAGAA+GGG	+	chr1.2:80178675-80178694	MS.gene93004:CDS	35.0%
	AAAAACAGGCATGAAGTGGT+TGG	+	chr1.2:80176995-80177014	MS.gene93004:intron	40.0%
	AAGAGCTTATCACAGTGACA+TGG	-	chr1.2:80177987-80178006	None:intergenic	40.0%
	ATCATTGACACTGTTCCTGT+TGG	+	chr1.2:80178111-80178130	MS.gene93004:CDS	40.0%
	CCAATTATCCTATGGTTCCT+GGG	+	chr1.2:80176789-80176808	MS.gene93004:CDS	40.0%
	CTTGTTAGCTCAGATACTGT+TGG	+	chr1.2:80178057-80178076	MS.gene93004:CDS	40.0%
	GATTGGAGAAGAATGATGTG+AGG	+	chr1.2:80178754-80178773	MS.gene93004:CDS	40.0%
	GGTGATTAGATTACACTCTC+AGG	+	chr1.2:80176558-80176577	MS.gene93004:intron	40.0%
	GTTCAAAGTGGGAGAAATTG+TGG	+	chr1.2:80177051-80177070	MS.gene93004:CDS	40.0%
	TCCAATTATCCTATGGTTCC+TGG	+	chr1.2:80176788-80176807	MS.gene93004:CDS	40.0%
	TGATCAATCGAAGATGTGTC+TGG	+	chr1.2:80176835-80176854	MS.gene93004:intron	40.0%
	TGGCATGTCCAATTATCCTA+TGG	+	chr1.2:80176781-80176800	MS.gene93004:CDS	40.0%
	TGTGAAAATACCAGAGGGAT+TGG	+	chr1.2:80177807-80177826	MS.gene93004:CDS	40.0%
	TGTGTATGGAGTGAGAATTC+CGG	-	chr1.2:80176528-80176547	None:intergenic	40.0%
	TGTTTGGGGATATTACTGTC+AGG	+	chr1.2:80177779-80177798	MS.gene93004:intron	40.0%
	TTCAGCCCAAAATGTGAAAG+TGG	-	chr1.2:80177883-80177902	None:intergenic	40.0%
!	AGGTGGGTTCAAATGTTACA+AGG	+	chr1.2:80177029-80177048	MS.gene93004:CDS	40.0%
!	ATTTTGGGCTGAAAACACCT+GGG	+	chr1.2:80177890-80177909	MS.gene93004:CDS	40.0%
!	GTTTTACCTAGCATGACCAT+AGG	-	chr1.2:80178228-80178247	None:intergenic	40.0%
!!	GTGAAAGTAGCAAAGGCATT+AGG	+	chr1.2:80177958-80177977	MS.gene93004:CDS	40.0%
!!	TTACTTTTGTTCAACGACGG+TGG	-	chr1.2:80177215-80177234	None:intergenic	40.0%
!!!	GTTGGAGTTTTGGAAAGAGA+AGG	+	chr1.2:80178674-80178693	MS.gene93004:CDS	40.0%
	AATATTCCACCTCTTAGCCC+AGG	-	chr1.2:80177910-80177929	None:intergenic	45.0%
	ACTGACGGAAAGATCACTCA+GGG	+	chr1.2:80177175-80177194	MS.gene93004:CDS	45.0%
	AGAGGTGGAATATTGGGTCT+TGG	+	chr1.2:80177916-80177935	MS.gene93004:CDS	45.0%
	AGGTTCGTTGTGGATGTCAA+AGG	+	chr1.2:80178780-80178799	MS.gene93004:CDS	45.0%
	ATATTGGGTCTTGGTGGAGT+AGG	+	chr1.2:80177925-80177944	MS.gene93004:CDS	45.0%
	ATGGAGTGAGAATTCCGGAA+GGG	-	chr1.2:80176523-80176542	None:intergenic	45.0%
	CATACATACCCAGGAACCAT+AGG	-	chr1.2:80176800-80176819	None:intergenic	45.0%
	CATATGCAGAAACACAGGAC+CGG	+	chr1.2:80176688-80176707	MS.gene93004:intron	45.0%
	CCCAGGAACCATAGGATAAT+TGG	-	chr1.2:80176792-80176811	None:intergenic	45.0%
	CGGACATATCCAACAAACAC+CGG	-	chr1.2:80176899-80176918	None:intergenic	45.0%
	CTCCATACACATACACTCTC+AGG	+	chr1.2:80176537-80176556	MS.gene93004:CDS	45.0%
	GCTGCAGAAAGAACAACAGT+AGG	+	chr1.2:80176482-80176501	MS.gene93004:CDS	45.0%
	GGGCTAAGAGGTGGAATATT+GGG	+	chr1.2:80177910-80177929	MS.gene93004:CDS	45.0%
	GTAGGGAGGAAGTCAATTAC+TGG	+	chr1.2:80178615-80178634	MS.gene93004:intron	45.0%
	GTTACACCTATGGTCATGCT+AGG	+	chr1.2:80178219-80178238	MS.gene93004:CDS	45.0%
	TATGGAGTGAGAATTCCGGA+AGG	-	chr1.2:80176524-80176543	None:intergenic	45.0%
	TGATGTTGTGTTACGTAGGG+AGG	+	chr1.2:80178601-80178620	MS.gene93004:intron	45.0%
	TGGGCTAAGAGGTGGAATAT+TGG	+	chr1.2:80177909-80177928	MS.gene93004:CDS	45.0%
	TGTGAGGTATAGGTTCGTTG+TGG	+	chr1.2:80178770-80178789	MS.gene93004:CDS	45.0%
!	AACAATGGTGCAACTTGCTC+TGG	-	chr1.2:80177835-80177854	None:intergenic	45.0%
!	CACCTGAGAGTGTATGTGTA+TGG	-	chr1.2:80176542-80176561	None:intergenic	45.0%
!	CAGAGGAGATGTTGGAGTTT+TGG	+	chr1.2:80178664-80178683	MS.gene93004:CDS	45.0%
!	CATTTTGGGCTGAAAACACC+TGG	+	chr1.2:80177889-80177908	MS.gene93004:CDS	45.0%
!!	AAAGAGGCACTTGAGGATCT+TGG	+	chr1.2:80178021-80178040	MS.gene93004:CDS	45.0%
!!	GAAGAAGAAAGAGGCACTTG+AGG	+	chr1.2:80178014-80178033	MS.gene93004:CDS	45.0%
!!!	TAAACTTTTTTTTTTTAATT+TGG	+	chr1.2:80178384-80178403	MS.gene93004:intron	5.0%
!!!	TTTTTAAATAATTTATGTTT+AGG	-	chr1.2:80178456-80178475	None:intergenic	5.0%
	AAAACACCTGGGCTAAGAGG+TGG	+	chr1.2:80177901-80177920	MS.gene93004:CDS	50.0%
	CACTGACGGAAAGATCACTC+AGG	+	chr1.2:80177174-80177193	MS.gene93004:CDS	50.0%
	CATGGGGGTGAAAGTAGCAA+AGG	+	chr1.2:80177951-80177970	MS.gene93004:CDS	50.0%
	CTGAAAACACCTGGGCTAAG+AGG	+	chr1.2:80177898-80177917	MS.gene93004:CDS	50.0%
	CTTGGTGGAGTAGGACACAT+GGG	+	chr1.2:80177934-80177953	MS.gene93004:CDS	50.0%
	GAAGGAGACAGAGGAGATGT+TGG	+	chr1.2:80178656-80178675	MS.gene93004:CDS	50.0%
	GGTGGAATATTGGGTCTTGG+TGG	+	chr1.2:80177919-80177938	MS.gene93004:CDS	50.0%
	GTCACACCTGCACACAACAA+TGG	-	chr1.2:80177850-80177869	None:intergenic	50.0%
	GTGGGAGAAATTGTGGGAGT+TGG	+	chr1.2:80177058-80177077	MS.gene93004:CDS	50.0%
	GTTGCACCATTGTTGTGTGC+AGG	+	chr1.2:80177841-80177860	MS.gene93004:CDS	50.0%
	TCTTGGTGGAGTAGGACACA+TGG	+	chr1.2:80177933-80177952	MS.gene93004:CDS	50.0%
	TTGGCTGCAAAAGACCCTTC+CGG	+	chr1.2:80176506-80176525	MS.gene93004:CDS	50.0%
	TTGGTGGAGTAGGACACATG+GGG	+	chr1.2:80177935-80177954	MS.gene93004:CDS	50.0%
!	CGGTCCTGTGTTTCTGCATA+TGG	-	chr1.2:80176690-80176709	None:intergenic	50.0%
!!	AAGCTTTGTTGGGAGCGTGA+AGG	+	chr1.2:80178638-80178657	MS.gene93004:CDS	50.0%
	GACGGAAAGATCACTCAGGG+TGG	+	chr1.2:80177178-80177197	MS.gene93004:CDS	55.0%
	TGGTGGAGTAGGACACATGG+GGG	+	chr1.2:80177936-80177955	MS.gene93004:CDS	55.0%
!	CAGGCATGAAGTGGTTGGTG+AGG	+	chr1.2:80177000-80177019	MS.gene93004:intron	55.0%
!	GTTGGTGAGGTGCTAGAGGT+GGG	+	chr1.2:80177013-80177032	MS.gene93004:CDS	55.0%
!!	AGTGGTTGGTGAGGTGCTAG+AGG	+	chr1.2:80177009-80177028	MS.gene93004:CDS	55.0%
!!	GTGGGAGTTGGTCTTCTCGT+TGG	+	chr1.2:80177070-80177089	MS.gene93004:CDS	55.0%
	GGCTCAAGAGGGTGACCAAC+AGG	-	chr1.2:80178129-80178148	None:intergenic	60.0%
!	TGCTCTGGTGCCAATCCCTC+TGG	-	chr1.2:80177820-80177839	None:intergenic	60.0%
!	TGGGAGCGTGAAGGAGACAG+AGG	+	chr1.2:80178647-80178666	MS.gene93004:CDS	60.0%
!!	GGTTGGTGAGGTGCTAGAGG+TGG	+	chr1.2:80177012-80177031	MS.gene93004:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	80176467	80178821	80176467	ID=MS.gene93004
chr1.2	mRNA	80176467	80178821	80176467	ID=MS.gene93004.t1;Parent=MS.gene93004
chr1.2	exon	80176467	80176558	80176467	ID=MS.gene93004.t1.exon1;Parent=MS.gene93004.t1
chr1.2	CDS	80176467	80176558	80176467	ID=cds.MS.gene93004.t1;Parent=MS.gene93004.t1
chr1.2	exon	80176697	80176810	80176697	ID=MS.gene93004.t1.exon2;Parent=MS.gene93004.t1
chr1.2	CDS	80176697	80176810	80176697	ID=cds.MS.gene93004.t1;Parent=MS.gene93004.t1
chr1.2	exon	80177003	80177230	80177003	ID=MS.gene93004.t1.exon3;Parent=MS.gene93004.t1
chr1.2	CDS	80177003	80177230	80177003	ID=cds.MS.gene93004.t1;Parent=MS.gene93004.t1
chr1.2	exon	80177801	80178240	80177801	ID=MS.gene93004.t1.exon4;Parent=MS.gene93004.t1
chr1.2	CDS	80177801	80178240	80177801	ID=cds.MS.gene93004.t1;Parent=MS.gene93004.t1
chr1.2	exon	80178619	80178821	80178619	ID=MS.gene93004.t1.exon5;Parent=MS.gene93004.t1
chr1.2	CDS	80178619	80178821	80178619	ID=cds.MS.gene93004.t1;Parent=MS.gene93004.t1

Gene Sequence

>MS.gene93004

ATGGGTAGCATTGAAGCTGCAGAAAGAACAACAGTAGGATTGGCTGCAAAAGACCCTTCCGGAATTCTCACTCCATACACATACACTCTCAGGTGATTAGATTACACTCTCAGGTGTAAATAAACGTCTTCTGATTTATTTATTATATACTTATATTTGTTTTTTGTGACAATACGTACGTGACGATTAATAATATATAATATTATTGTTATGCTTAAAACCATATGCAGAAACACAGGACCGGATGATGTTTACATCAAAATTCATTACTGTGGAGTCTGTCATTCTGATCTTCACCAAATCAAAAATGATCTTGGCATGTCCAATTATCCTATGGTTCCTGGGTATGTATGTTAACTTCTTAACTCTGATCAATCGAAGATGTGTCTGGTGTCTGATACATACGACGTATGTATCAAATTATTATGTCCGGTGTTTGTTGGATATGTCCGTGTTTCGATTAATTTTAAGGTTCTTAATTAGTGTTGTATCTTTTGTTGAGAAAAATTAACGTTTATGATTGTTTTGAAAAACAGGCATGAAGTGGTTGGTGAGGTGCTAGAGGTGGGTTCAAATGTTACAAGGTTCAAAGTGGGAGAAATTGTGGGAGTTGGTCTTCTCGTTGGTTGCTGCAAAAGCTGCAGAGCATGTGATTCTGAGATTGAGCAATACTGTAACAAGAAGATCTGGTCTTACAATGATGTTTACACTGACGGAAAGATCACTCAGGGTGGCTTTGCTGAATCCACCGTCGTTGAACAAAAGTAATTAATAATCATAAAATTAAATTAAATTAAATTATTTTCTCATTTTTTATTCTTTTCCGTGTCAAATTAAATTCCACACGTTTTATGCATTTCTGAAAAACCCCATTTAAAAAACATTGATGATTTGATGTCTGTTTAGATTATTTTCAGCTTATTTTCAACTTATTGTCAAATCTGTGTATACTTCATATGAAATGAAAATTGTTTGATCTTATTTGACTTTTTCATTATTGATATAACTTATGTTATAAGTTGTTTATCCAAACGCTTATGTTATGAAAAATGTTTTATGGACGCCCAATTTTTTTCACACCTGTTAATCACATACAAACTTGTGATTGATTTGATTCAATTGAGTAGATAATTAATTTAGATATGTTCGATTGTGGTTAATTATGTAGTTGAATTGACCATATTTTTTTTACTGTGAACTAAATTAACTGTGTACCCAACTAAATTAATTACTTTTATGAACCTGGTGTAAAAGGTGTTAGAAAAAATAGATGTTTGAATATTATTACTGAGTTTATTTTAAACTGATTATGTGTTTGGGGATATTACTGTCAGGTTTGTTGTGAAAATACCAGAGGGATTGGCACCAGAGCAAGTTGCACCATTGTTGTGTGCAGGTGTGACTGTGTACAGTCCACTTTCACATTTTGGGCTGAAAACACCTGGGCTAAGAGGTGGAATATTGGGTCTTGGTGGAGTAGGACACATGGGGGTGAAAGTAGCAAAGGCATTAGGTCACCATGTCACTGTGATAAGCTCTTCTGATAAGAAGAAGAAAGAGGCACTTGAGGATCTTGGAGCTGACAATTATCTTGTTAGCTCAGATACTGTTGGGATGCAAGAAGCTGCTGATTCACTTGATTATATCATTGACACTGTTCCTGTTGGTCACCCTCTTGAGCCTTATCTTTCATTGCTCAAAATTGATGGGAAATTGATCTTGATGGGTGTTATTAACACCCCTCTTCAATTTGTTACACCTATGGTCATGCTAGGTAAAACCCACCTTCTTCTTTCTCATCAATGATTTTTAGCTTAGTTAGTTATTGAATAGGTGGTCCCTTGACTATTGAAGATTTTAAAATTATTCATTGAGCTGAAAAAATTGTAATCATATCCTAAATTTGTTAGTAATTTTTAAACTTTTTTTTTTTAATTTGGTCTCTCAACTTTTAAATAACTTGTAATTAGGTCTTGAATTTAGGGACCTAAACATAAATTATTTAAAAATCTAGTTCAAGGATATATTTGAAAATCTCCAAATTGTTCAATAACTTAAAGAGTAATTAATTTTTTTTTTATTTTTTTTTTTTTGCTTTTGATTTTTCCAATTGTAATGATATCTTCTAATCTATTGATGTTGTGTTACGTAGGGAGGAAGTCAATTACTGGAAGCTTTGTTGGGAGCGTGAAGGAGACAGAGGAGATGTTGGAGTTTTGGAAAGAGAAGGGTCTAACTTCCATGATTGAAATTGTAACTATGGATTACATTAACAAAGCTTTTGAAAGATTGGAGAAGAATGATGTGAGGTATAGGTTCGTTGTGGATGTCAAAGGAAGTAAATTTGAGGAGTGA

Protein sequence

>MS.gene93004.t1

MGSIEAAERTTVGLAAKDPSGILTPYTYTLRNTGPDDVYIKIHYCGVCHSDLHQIKNDLGMSNYPMVPGHEVVGEVLEVGSNVTRFKVGEIVGVGLLVGCCKSCRACDSEIEQYCNKKIWSYNDVYTDGKITQGGFAESTVVEQKFVVKIPEGLAPEQVAPLLCAGVTVYSPLSHFGLKTPGLRGGILGLGGVGHMGVKVAKALGHHVTVISSSDKKKKEALEDLGADNYLVSSDTVGMQEAADSLDYIIDTVPVGHPLEPYLSLLKIDGKLILMGVINTPLQFVTPMVMLGRKSITGSFVGSVKETEEMLEFWKEKGLTSMIEIVTMDYINKAFERLEKNDVRYRFVVDVKGSKFEE