Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070874.t1 | PNX92642.1 | 83.3 | 360 | 60 | 0 | 1 | 360 | 1 | 360 | 8.40E-179 | 636.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070874.t1 | Q9ZRF1 | 80.2 | 353 | 70 | 0 | 6 | 358 | 4 | 356 | 1.2e-168 | 594.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070874.t1 | A0A2K3MPD7 | 83.3 | 360 | 60 | 0 | 1 | 360 | 1 | 360 | 6.1e-179 | 636.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054277 | MS.gene070874 | 0.806247 | 9.02E-50 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070874.t1 | MTR_5g031390 | 80.000 | 360 | 72 | 0 | 1 | 360 | 1 | 360 | 0.0 | 588 |
| MS.gene070874.t1 | MTR_5g031250 | 79.722 | 360 | 73 | 0 | 1 | 360 | 1 | 360 | 0.0 | 583 |
| MS.gene070874.t1 | MTR_5g031230 | 79.167 | 360 | 75 | 0 | 1 | 360 | 1 | 360 | 0.0 | 582 |
| MS.gene070874.t1 | MTR_4g115300 | 78.333 | 360 | 78 | 0 | 1 | 360 | 1 | 360 | 0.0 | 574 |
| MS.gene070874.t1 | MTR_5g031305 | 78.177 | 362 | 78 | 1 | 1 | 361 | 1 | 362 | 0.0 | 572 |
| MS.gene070874.t1 | MTR_5g031300 | 77.839 | 361 | 79 | 1 | 1 | 360 | 1 | 361 | 0.0 | 572 |
| MS.gene070874.t1 | MTR_5g031190 | 75.833 | 360 | 87 | 0 | 1 | 360 | 1 | 360 | 0.0 | 570 |
| MS.gene070874.t1 | MTR_5g031310 | 78.177 | 362 | 78 | 1 | 1 | 361 | 1 | 362 | 0.0 | 569 |
| MS.gene070874.t1 | MTR_8g068190 | 78.611 | 360 | 77 | 0 | 1 | 360 | 1 | 360 | 0.0 | 557 |
| MS.gene070874.t1 | MTR_5g031180 | 80.000 | 360 | 72 | 0 | 1 | 360 | 1 | 360 | 0.0 | 557 |
| MS.gene070874.t1 | MTR_5g031210 | 76.944 | 360 | 83 | 0 | 1 | 360 | 1 | 360 | 0.0 | 553 |
| MS.gene070874.t1 | MTR_5g031360 | 76.136 | 352 | 84 | 0 | 10 | 361 | 12 | 363 | 0.0 | 546 |
| MS.gene070874.t1 | MTR_8g092630 | 63.025 | 357 | 126 | 2 | 8 | 359 | 60 | 415 | 4.98e-154 | 439 |
| MS.gene070874.t1 | MTR_5g031430 | 63.768 | 345 | 125 | 0 | 14 | 358 | 14 | 358 | 1.71e-151 | 431 |
| MS.gene070874.t1 | MTR_1g025950 | 60.458 | 349 | 137 | 1 | 8 | 355 | 7 | 355 | 1.00e-144 | 414 |
| MS.gene070874.t1 | MTR_5g031250 | 80.083 | 241 | 48 | 0 | 1 | 241 | 1 | 241 | 3.79e-136 | 388 |
| MS.gene070874.t1 | MTR_2g009810 | 55.780 | 346 | 151 | 2 | 14 | 358 | 62 | 406 | 5.27e-123 | 360 |
| MS.gene070874.t1 | MTR_1g107425 | 52.770 | 343 | 162 | 0 | 11 | 353 | 9 | 351 | 6.15e-123 | 358 |
| MS.gene070874.t1 | MTR_1g107425 | 53.125 | 288 | 135 | 0 | 11 | 298 | 9 | 296 | 1.08e-98 | 295 |
| MS.gene070874.t1 | MTR_5g031290 | 98.261 | 115 | 2 | 0 | 247 | 361 | 80 | 194 | 5.08e-74 | 228 |
| MS.gene070874.t1 | MTR_5g031290 | 96.250 | 80 | 2 | 1 | 1 | 79 | 1 | 80 | 4.35e-50 | 166 |
| MS.gene070874.t1 | MTR_2g009820 | 51.822 | 247 | 115 | 3 | 116 | 358 | 8 | 254 | 1.08e-67 | 214 |
| MS.gene070874.t1 | MTR_8g095220 | 27.609 | 297 | 183 | 10 | 10 | 278 | 51 | 343 | 5.76e-21 | 94.0 |
| MS.gene070874.t1 | MTR_8g095220 | 28.516 | 256 | 156 | 7 | 10 | 242 | 51 | 302 | 1.83e-20 | 90.9 |
| MS.gene070874.t1 | MTR_3g089977 | 23.797 | 374 | 249 | 11 | 11 | 354 | 12 | 379 | 1.69e-18 | 86.3 |
| MS.gene070874.t1 | MTR_3g089940 | 24.176 | 364 | 241 | 10 | 11 | 344 | 12 | 370 | 2.31e-18 | 85.9 |
| MS.gene070874.t1 | MTR_3g089940 | 23.901 | 364 | 242 | 10 | 11 | 344 | 12 | 370 | 4.79e-18 | 85.1 |
| MS.gene070874.t1 | MTR_3g089940 | 24.398 | 332 | 224 | 8 | 11 | 319 | 12 | 339 | 1.30e-16 | 80.5 |
| MS.gene070874.t1 | MTR_3g089970 | 23.757 | 362 | 241 | 10 | 13 | 344 | 15 | 371 | 1.42e-16 | 80.5 |
| MS.gene070874.t1 | MTR_0001s0660 | 25.948 | 343 | 223 | 12 | 38 | 353 | 35 | 373 | 1.50e-16 | 80.9 |
| MS.gene070874.t1 | MTR_3g089940 | 24.096 | 332 | 225 | 8 | 11 | 319 | 12 | 339 | 2.14e-16 | 79.7 |
| MS.gene070874.t1 | MTR_5g045710 | 25.225 | 333 | 210 | 12 | 38 | 338 | 35 | 360 | 7.98e-15 | 75.5 |
| MS.gene070874.t1 | MTR_1g069430 | 24.629 | 337 | 223 | 10 | 1 | 312 | 1 | 331 | 1.75e-13 | 71.2 |
| MS.gene070874.t1 | MTR_7g068320 | 25.852 | 352 | 195 | 16 | 39 | 341 | 48 | 382 | 9.67e-13 | 69.3 |
| MS.gene070874.t1 | MTR_7g068330 | 26.957 | 345 | 199 | 20 | 39 | 341 | 41 | 374 | 6.53e-12 | 66.6 |
| MS.gene070874.t1 | MTR_3g099460 | 24.534 | 322 | 187 | 11 | 39 | 319 | 37 | 343 | 1.13e-11 | 65.9 |
| MS.gene070874.t1 | MTR_3g099460 | 24.534 | 322 | 187 | 11 | 39 | 319 | 44 | 350 | 1.27e-11 | 65.9 |
| MS.gene070874.t1 | MTR_7g099040 | 23.547 | 327 | 219 | 9 | 11 | 312 | 13 | 333 | 2.42e-11 | 64.7 |
| MS.gene070874.t1 | MTR_3g099460 | 31.724 | 145 | 81 | 5 | 39 | 166 | 37 | 180 | 5.73e-11 | 63.2 |
| MS.gene070874.t1 | MTR_3g099460 | 31.724 | 145 | 81 | 5 | 39 | 166 | 44 | 187 | 6.31e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070874.t1 | AT4G37990 | 72.080 | 351 | 98 | 0 | 11 | 361 | 7 | 357 | 2.52e-173 | 486 |
| MS.gene070874.t1 | AT4G37980 | 70.085 | 351 | 105 | 0 | 11 | 361 | 7 | 357 | 3.68e-173 | 486 |
| MS.gene070874.t1 | AT4G39330 | 64.986 | 357 | 125 | 0 | 1 | 357 | 1 | 357 | 1.03e-170 | 480 |
| MS.gene070874.t1 | AT4G37970 | 64.225 | 355 | 127 | 0 | 6 | 360 | 7 | 361 | 5.35e-168 | 473 |
| MS.gene070874.t1 | AT2G21890 | 61.671 | 347 | 132 | 1 | 12 | 357 | 6 | 352 | 7.23e-156 | 443 |
| MS.gene070874.t1 | AT2G21730 | 62.069 | 348 | 130 | 2 | 12 | 357 | 6 | 353 | 3.00e-155 | 441 |
| MS.gene070874.t1 | AT4G39330 | 64.120 | 301 | 108 | 0 | 1 | 301 | 1 | 301 | 6.44e-138 | 395 |
| MS.gene070874.t1 | AT4G37980 | 69.686 | 287 | 87 | 0 | 11 | 297 | 7 | 293 | 1.16e-134 | 386 |
| MS.gene070874.t1 | AT4G37970 | 63.322 | 289 | 106 | 0 | 6 | 294 | 7 | 295 | 2.47e-129 | 372 |
| MS.gene070874.t1 | AT1G72680 | 53.644 | 343 | 158 | 1 | 16 | 358 | 14 | 355 | 1.42e-121 | 355 |
| MS.gene070874.t1 | AT3G19450 | 52.023 | 346 | 166 | 0 | 11 | 356 | 9 | 354 | 3.36e-113 | 334 |
| MS.gene070874.t1 | AT4G37970 | 62.500 | 240 | 90 | 0 | 6 | 245 | 7 | 246 | 9.85e-104 | 306 |
| MS.gene070874.t1 | AT4G34230 | 52.023 | 346 | 166 | 0 | 8 | 353 | 5 | 350 | 1.38e-103 | 309 |
| MS.gene070874.t1 | AT4G37970 | 62.869 | 237 | 88 | 0 | 6 | 242 | 7 | 243 | 1.05e-102 | 303 |
| MS.gene070874.t1 | AT4G34230 | 51.734 | 346 | 167 | 0 | 8 | 353 | 5 | 350 | 1.29e-102 | 306 |
| MS.gene070874.t1 | AT5G63620 | 25.517 | 290 | 188 | 7 | 15 | 278 | 58 | 345 | 3.30e-19 | 89.0 |
| MS.gene070874.t1 | AT5G63620 | 25.517 | 290 | 188 | 7 | 15 | 278 | 58 | 345 | 3.43e-19 | 88.6 |
| MS.gene070874.t1 | AT5G63620 | 26.506 | 249 | 160 | 5 | 15 | 242 | 58 | 304 | 2.03e-18 | 85.5 |
| MS.gene070874.t1 | AT5G43940 | 25.816 | 337 | 219 | 10 | 1 | 312 | 1 | 331 | 1.34e-17 | 83.6 |
| MS.gene070874.t1 | AT1G22430 | 26.756 | 299 | 184 | 10 | 39 | 307 | 42 | 335 | 1.37e-16 | 80.9 |
| MS.gene070874.t1 | AT1G22430 | 26.756 | 299 | 184 | 10 | 39 | 307 | 42 | 335 | 1.37e-16 | 80.9 |
| MS.gene070874.t1 | AT5G43940 | 25.753 | 299 | 194 | 8 | 39 | 312 | 48 | 343 | 1.73e-16 | 80.5 |
| MS.gene070874.t1 | AT1G32780 | 25.833 | 360 | 224 | 12 | 39 | 358 | 37 | 393 | 3.03e-16 | 79.7 |
| MS.gene070874.t1 | AT1G22440 | 26.578 | 301 | 182 | 11 | 39 | 307 | 40 | 333 | 8.37e-16 | 78.6 |
| MS.gene070874.t1 | AT1G77120 | 22.977 | 383 | 261 | 12 | 1 | 354 | 1 | 378 | 1.12e-15 | 77.8 |
| MS.gene070874.t1 | AT1G22430 | 28.141 | 199 | 124 | 5 | 39 | 219 | 42 | 239 | 6.39e-15 | 75.1 |
| MS.gene070874.t1 | AT1G22430 | 29.146 | 199 | 122 | 6 | 39 | 219 | 42 | 239 | 8.44e-15 | 74.3 |
| MS.gene070874.t1 | AT1G22430 | 29.146 | 199 | 122 | 6 | 39 | 219 | 42 | 239 | 8.44e-15 | 74.3 |
| MS.gene070874.t1 | AT1G64710 | 24.277 | 346 | 228 | 11 | 1 | 318 | 1 | 340 | 3.86e-14 | 73.6 |
| MS.gene070874.t1 | AT4G22110 | 26.688 | 311 | 169 | 12 | 39 | 307 | 43 | 336 | 7.68e-14 | 72.4 |
| MS.gene070874.t1 | AT4G22110 | 26.688 | 311 | 169 | 12 | 39 | 307 | 43 | 336 | 7.68e-14 | 72.4 |
| MS.gene070874.t1 | AT1G64710 | 24.351 | 308 | 202 | 10 | 39 | 318 | 13 | 317 | 1.70e-13 | 71.2 |
| MS.gene070874.t1 | AT5G51970 | 23.970 | 267 | 182 | 6 | 36 | 290 | 40 | 297 | 1.70e-13 | 71.2 |
| MS.gene070874.t1 | AT5G51970 | 23.970 | 267 | 182 | 6 | 36 | 290 | 40 | 297 | 1.70e-13 | 71.2 |
| MS.gene070874.t1 | AT4G22110 | 29.714 | 175 | 105 | 4 | 39 | 196 | 43 | 216 | 3.05e-13 | 69.7 |
Find 110 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAGCCCTCTTATATATTA+TGG | 0.179321 | 5.4:+21436017 | MS.gene070874:CDS |
| GTAAAATTTGCCAAAGCTTT+TGG | 0.190975 | 5.4:+21436101 | MS.gene070874:CDS |
| TTCTTTGGATGCTCGTATTC+AGG | 0.221302 | 5.4:-21433537 | None:intergenic |
| TCATGTGGGTGTGGTTGGCC+TGG | 0.239973 | 5.4:+21436058 | MS.gene070874:CDS |
| GCCCAACCAAAGGCCTTCTT+TGG | 0.253742 | 5.4:-21433552 | None:intergenic |
| GTGGTTGGCCTGGGTGGGTT+GGG | 0.269230 | 5.4:+21436068 | MS.gene070874:CDS |
| CCTGGGTGGGTTGGGCCATA+TGG | 0.283320 | 5.4:+21436076 | MS.gene070874:CDS |
| GTAAATCAATTAGGGGTAAG+AGG | 0.298660 | 5.4:-21436443 | None:intergenic |
| GGTAACTCAAGAGGCTTCTC+TGG | 0.324759 | 5.4:-21436501 | None:intergenic |
| CATGTGGGTGTGGTTGGCCT+GGG | 0.325106 | 5.4:+21436059 | MS.gene070874:CDS |
| TGTGGTTGGCCTGGGTGGGT+TGG | 0.331538 | 5.4:+21436067 | MS.gene070874:CDS |
| TTTACTTCTTATAGGGAAAC+AGG | 0.345430 | 5.4:+21434450 | MS.gene070874:intron |
| GGATGTGCCCCATCCGTTCT+TGG | 0.349233 | 5.4:-21434535 | None:intergenic |
| GCATCAAGTGGTAAGGTATT+AGG | 0.351624 | 5.4:-21435960 | None:intergenic |
| AGAGAAGCCTCTTGAGTTAC+CGG | 0.354673 | 5.4:+21436503 | MS.gene070874:CDS |
| CAAGACTGTCATCACAATCT+TGG | 0.357268 | 5.4:-21435821 | None:intergenic |
| AAACCTTACCCTGGAACTAA+TGG | 0.359391 | 5.4:-21434564 | None:intergenic |
| ATAGGTATAACTTCAATATC+AGG | 0.375109 | 5.4:-21436782 | None:intergenic |
| CACATTAACTCCAAAAGCTT+TGG | 0.387902 | 5.4:-21436111 | None:intergenic |
| GTGGGTGTGGTTGGCCTGGG+TGG | 0.391234 | 5.4:+21436062 | MS.gene070874:CDS |
| TTAGAAATGAATCAGCTTTG+AGG | 0.399461 | 5.4:-21436181 | None:intergenic |
| CCCCTTTCAATTTCTCCAGA+AGG | 0.415467 | 5.4:+21433601 | MS.gene070874:CDS |
| GGTCTTCATGTGGGTGTGGT+TGG | 0.417830 | 5.4:+21436053 | MS.gene070874:CDS |
| CTAGGCCGCAACGGGGACTT+TGG | 0.422192 | 5.4:+21436386 | MS.gene070874:intron |
| GATATTTAACATCTGATTTG+AGG | 0.424894 | 5.4:-21436835 | None:intergenic |
| TCCAAAGAAGGCCTTTGGTT+GGG | 0.430490 | 5.4:+21433551 | MS.gene070874:CDS |
| TAGTGGAATGGGAGGGATGA+AGG | 0.430679 | 5.4:+21436715 | MS.gene070874:CDS |
| ATCTCATGGAAAGCTTGTAT+TGG | 0.439344 | 5.4:+21436470 | MS.gene070874:CDS |
| TCCACCTACCCATTAGTTCC+AGG | 0.440028 | 5.4:+21434555 | MS.gene070874:CDS |
| TGGGTGTGGTTGGCCTGGGT+GGG | 0.440635 | 5.4:+21436063 | MS.gene070874:CDS |
| TTGAGTCCATAATATATAAG+AGG | 0.440641 | 5.4:-21436023 | None:intergenic |
| AGGGCTATAAACAGTGATTC+CGG | 0.443059 | 5.4:-21436003 | None:intergenic |
| TGATTTACCTGCATTTGATC+CGG | 0.443468 | 5.4:-21436215 | None:intergenic |
| ATGGTAGCTGGTAGTGGAAT+GGG | 0.444794 | 5.4:+21436704 | MS.gene070874:CDS |
| GAGCATCCAAAGAAGGCCTT+TGG | 0.455342 | 5.4:+21433546 | MS.gene070874:CDS |
| ACAAAATTTATACTCACATA+TGG | 0.456413 | 5.4:+21435855 | MS.gene070874:CDS |
| ATTTCTAATTAGCCGTGATC+CGG | 0.457200 | 5.4:+21436196 | MS.gene070874:CDS |
| AACCTTACCCTGGAACTAAT+GGG | 0.457495 | 5.4:-21434563 | None:intergenic |
| TGGGCAGCTAGAGATCCTTC+TGG | 0.459135 | 5.4:+21433570 | MS.gene070874:CDS |
| TATCGATTTGTGATTGACAT+TGG | 0.459329 | 5.4:+21436854 | MS.gene070874:CDS |
| TGATATTGAAGTTATACCTA+TGG | 0.461411 | 5.4:+21436784 | MS.gene070874:CDS |
| GTGGGTGTGGGATGCTTAGT+TGG | 0.470176 | 5.4:+21435783 | MS.gene070874:CDS |
| GTGGTAAGGTATTAGGTATA+CGG | 0.486894 | 5.4:-21435953 | None:intergenic |
| ATTGATTTACTAAAATCTCA+TGG | 0.489141 | 5.4:+21436456 | MS.gene070874:CDS |
| AGTGATGGAAGTATCACATA+TGG | 0.490148 | 5.4:+21435888 | MS.gene070874:CDS |
| CATTCAAAGTGTTGTACTGC+GGG | 0.490748 | 5.4:+21434487 | MS.gene070874:CDS |
| AATTACAGGCACGAAATTGT+TGG | 0.492254 | 5.4:+21435708 | MS.gene070874:intron |
| TCCACATGGCCAAGAACGGA+TGG | 0.501341 | 5.4:+21434526 | MS.gene070874:CDS |
| ATATGCTTACCCACTAGTAA+AGG | 0.502268 | 5.4:-21436531 | None:intergenic |
| TAAATCAATTAGGGGTAAGA+GGG | 0.509447 | 5.4:-21436442 | None:intergenic |
| AATGGTAGCTGGTAGTGGAA+TGG | 0.509954 | 5.4:+21436703 | MS.gene070874:CDS |
| AACCTTCTGGAGAAATTGAA+AGG | 0.514629 | 5.4:-21433603 | None:intergenic |
| GCTGCTCCTCTCCTTTGCGC+CGG | 0.516341 | 5.4:+21435984 | MS.gene070874:CDS |
| GTAACTCAAGAGGCTTCTCT+GGG | 0.523989 | 5.4:-21436500 | None:intergenic |
| GCCTGGTCTTCATGTGGGTG+TGG | 0.527673 | 5.4:+21436049 | MS.gene070874:CDS |
| ACCTTCTGGAGAAATTGAAA+GGG | 0.532153 | 5.4:-21433602 | None:intergenic |
| ATCCAAAGAAGGCCTTTGGT+TGG | 0.536152 | 5.4:+21433550 | MS.gene070874:CDS |
| GCCGCAACGGGGACTTTGGA+TGG | 0.537370 | 5.4:+21436390 | MS.gene070874:CDS |
| CACATGGCCAAGAACGGATG+GGG | 0.541448 | 5.4:+21434528 | MS.gene070874:CDS |
| CCCACTAGTAAAGGCCATGC+CGG | 0.544245 | 5.4:-21436522 | None:intergenic |
| CCTGCATTTGATCCGGATCA+CGG | 0.544959 | 5.4:-21436208 | None:intergenic |
| CAACAAGCCTGGTCTTCATG+TGG | 0.547081 | 5.4:+21436043 | MS.gene070874:CDS |
| TGAATACGAGCATCCAAAGA+AGG | 0.550894 | 5.4:+21433539 | MS.gene070874:CDS |
| ACCGGCATGGCCTTTACTAG+TGG | 0.552437 | 5.4:+21436521 | MS.gene070874:CDS |
| CCGTGATCCGGATCAAATGC+AGG | 0.557363 | 5.4:+21436208 | MS.gene070874:CDS |
| CATGGAAAGCTTGTATTGGT+TGG | 0.560486 | 5.4:+21436474 | MS.gene070874:CDS |
| TTTCAAAGTTGATGACAAAG+TGG | 0.561295 | 5.4:+21435764 | MS.gene070874:CDS |
| TATTATGGACTCAACAAGCC+TGG | 0.561737 | 5.4:+21436032 | MS.gene070874:CDS |
| CCACATGGCCAAGAACGGAT+GGG | 0.561885 | 5.4:+21434527 | MS.gene070874:CDS |
| TTCAAAGTTGATGACAAAGT+GGG | 0.565826 | 5.4:+21435765 | MS.gene070874:CDS |
| ATCCGTTCTTGGCCATGTGG+AGG | 0.568436 | 5.4:-21434524 | None:intergenic |
| AGTTGATGACAAAGTGGGTG+TGG | 0.569131 | 5.4:+21435770 | MS.gene070874:CDS |
| CCCTGGAACTAATGGGTAGG+TGG | 0.570055 | 5.4:-21434556 | None:intergenic |
| CCGGCATGGCCTTTACTAGT+GGG | 0.570249 | 5.4:+21436522 | MS.gene070874:CDS |
| GGCGCAAAGGAGAGGAGCAG+CGG | 0.572739 | 5.4:-21435982 | None:intergenic |
| AGCAGCGGCATCAAGTGGTA+AGG | 0.575003 | 5.4:-21435967 | None:intergenic |
| ATCTCTAGCTGCCCAACCAA+AGG | 0.576625 | 5.4:-21433562 | None:intergenic |
| AAACAGTGATTCCGGCGCAA+AGG | 0.583315 | 5.4:-21435995 | None:intergenic |
| AACAAGCCTGGTCTTCATGT+GGG | 0.586032 | 5.4:+21436044 | MS.gene070874:CDS |
| TATGGTGCTAAATATAGTGA+TGG | 0.589474 | 5.4:+21435873 | MS.gene070874:CDS |
| GACCTCCACATGGCCAAGAA+CGG | 0.590217 | 5.4:+21434522 | MS.gene070874:CDS |
| TATTATTGACACAATTTCTG+CGG | 0.593485 | 5.4:+21436413 | MS.gene070874:CDS |
| GTGATTCCGGCGCAAAGGAG+AGG | 0.596204 | 5.4:-21435990 | None:intergenic |
| AGAGGAGCAGCGGCATCAAG+TGG | 0.598337 | 5.4:-21435972 | None:intergenic |
| TGAGTCCATAATATATAAGA+GGG | 0.600060 | 5.4:-21436022 | None:intergenic |
| ACCACACCCACATGAAGACC+AGG | 0.605885 | 5.4:-21436050 | None:intergenic |
| GTAGCTGGTAGTGGAATGGG+AGG | 0.609728 | 5.4:+21436707 | MS.gene070874:CDS |
| GCTGTATTGACATAATCCAT+AGG | 0.609776 | 5.4:-21436800 | None:intergenic |
| GGCCATGCCGGTAACTCAAG+AGG | 0.610420 | 5.4:-21436510 | None:intergenic |
| CCCATCCGTTCTTGGCCATG+TGG | 0.610999 | 5.4:-21434527 | None:intergenic |
| CCATATGGCCCAACCCACCC+AGG | 0.614779 | 5.4:-21436076 | None:intergenic |
| GGATTATGTCAATACAGCAA+TGG | 0.623261 | 5.4:+21436805 | MS.gene070874:CDS |
| GTTGGTGTAGTGACTGAGGT+GGG | 0.627215 | 5.4:+21435726 | MS.gene070874:CDS |
| TGGAGGCTACTCTGACTCGA+TGG | 0.628568 | 5.4:+21435908 | MS.gene070874:CDS |
| CCACCTACCCATTAGTTCCA+GGG | 0.631579 | 5.4:+21434556 | MS.gene070874:CDS |
| AAAGGGGAGAGAACACCAGA+AGG | 0.635132 | 5.4:-21433585 | None:intergenic |
| GATGGAAGTATCACATATGG+AGG | 0.637694 | 5.4:+21435891 | MS.gene070874:CDS |
| GTTGATGACAAAGTGGGTGT+GGG | 0.640763 | 5.4:+21435771 | MS.gene070874:CDS |
| ATGCCACACGGACCTCCACA+TGG | 0.649847 | 5.4:+21434512 | MS.gene070874:CDS |
| ACCATCCAAAGTCCCCGTTG+CGG | 0.650835 | 5.4:-21436391 | None:intergenic |
| CCTTCTGGAGAAATTGAAAG+GGG | 0.653235 | 5.4:-21433601 | None:intergenic |
| TGTTGGTGTAGTGACTGAGG+TGG | 0.664351 | 5.4:+21435725 | MS.gene070874:CDS |
| TTACCCTGGAACTAATGGGT+AGG | 0.664593 | 5.4:-21434559 | None:intergenic |
| AGCCTCTTGAGTTACCGGCA+TGG | 0.673664 | 5.4:+21436508 | MS.gene070874:CDS |
| GTACTGCGGGATATGCCACA+CGG | 0.688920 | 5.4:+21434500 | MS.gene070874:CDS |
| GCATTCAAAGTGTTGTACTG+CGG | 0.697031 | 5.4:+21434486 | MS.gene070874:CDS |
| TAGCTGGTAGTGGAATGGGA+GGG | 0.704913 | 5.4:+21436708 | MS.gene070874:CDS |
| TGGCCATGTGGAGGTCCGTG+TGG | 0.712135 | 5.4:-21434515 | None:intergenic |
| AATTGTTGGTGTAGTGACTG+AGG | 0.753175 | 5.4:+21435722 | MS.gene070874:CDS |
| TAACTCAAGAGGCTTCTCTG+GGG | 0.760143 | 5.4:-21436499 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTAGTCAATTATAAAT+TGG | - | chr5.4:21434837-21434856 | None:intergenic | 10.0% |
| !! | AATTTAGTCAATTATAAATT+GGG | - | chr5.4:21434836-21434855 | None:intergenic | 10.0% |
| !! | TACTAGTTAAATATTTATTA+TGG | - | chr5.4:21434059-21434078 | None:intergenic | 10.0% |
| !! | TATTAAATTTACTTCTTATA+GGG | + | chr5.4:21434443-21434462 | MS.gene070874:intron | 10.0% |
| !! | AAGGTAAAATAATTTATGTT+TGG | - | chr5.4:21434926-21434945 | None:intergenic | 15.0% |
| !! | AATAAATGTATAAAATGAAG+AGG | - | chr5.4:21433636-21433655 | None:intergenic | 15.0% |
| !! | ATAATCATCATGATTATATA+AGG | - | chr5.4:21434392-21434411 | None:intergenic | 15.0% |
| !! | ATTTAGTCAATTATAAATTG+GGG | - | chr5.4:21434835-21434854 | None:intergenic | 15.0% |
| !! | CACTTTAATTCTAAATAATT+AGG | - | chr5.4:21434334-21434353 | None:intergenic | 15.0% |
| !! | CTATAAGAAGTAAATTTAAT+AGG | - | chr5.4:21434444-21434463 | None:intergenic | 15.0% |
| !! | CTATTAAATTTACTTCTTAT+AGG | + | chr5.4:21434442-21434461 | MS.gene070874:intron | 15.0% |
| !! | GTTATCAAAAAAAAAAATCT+AGG | + | chr5.4:21433931-21433950 | MS.gene070874:intron | 15.0% |
| !! | TAATCATCATGATTATATAA+GGG | - | chr5.4:21434391-21434410 | None:intergenic | 15.0% |
| !! | TGATAGATAAAAATGAAAAA+GGG | + | chr5.4:21433958-21433977 | MS.gene070874:intron | 15.0% |
| !! | TTTAATTCTAAATAATTAGG+TGG | - | chr5.4:21434331-21434350 | None:intergenic | 15.0% |
| !!! | AATTATCATTAATTTTTCGA+TGG | + | chr5.4:21434140-21434159 | MS.gene070874:intron | 15.0% |
| !!! | AGATTTTAGTAAATCAATTA+GGG | - | chr5.4:21436454-21436473 | None:intergenic | 15.0% |
| !!! | ATAAATGTTGATAATTTTCT+AGG | + | chr5.4:21436368-21436387 | MS.gene070874:intron | 15.0% |
| !!! | ATTTGAAGTAACAATTAAAT+AGG | + | chr5.4:21433885-21433904 | MS.gene070874:intron | 15.0% |
| !!! | TAATATTTTGATGTATTGTA+GGG | + | chr5.4:21436675-21436694 | MS.gene070874:intron | 15.0% |
| !!! | TATGTATTTTTTTTTCAACT+TGG | + | chr5.4:21436256-21436275 | MS.gene070874:intron | 15.0% |
| !!! | TTAATATTTTGATGTATTGT+AGG | + | chr5.4:21436674-21436693 | MS.gene070874:intron | 15.0% |
| !!! | TTTATTAACATTTTGTTTCA+TGG | + | chr5.4:21434591-21434610 | MS.gene070874:intron | 15.0% |
| !! | AAATCATTTAATCTCTGTTA+AGG | + | chr5.4:21434174-21434193 | MS.gene070874:intron | 20.0% |
| !! | AACTCTACTTATATAAGTAA+CGG | + | chr5.4:21434633-21434652 | MS.gene070874:intron | 20.0% |
| !! | AATAGGAACAAAAAATTTCT+AGG | + | chr5.4:21433902-21433921 | MS.gene070874:intron | 20.0% |
| !! | AATTGTAGTATAAAAGATGT+TGG | - | chr5.4:21435529-21435548 | None:intergenic | 20.0% |
| !! | ACAAAATTTATACTCACATA+TGG | + | chr5.4:21435855-21435874 | MS.gene070874:CDS | 20.0% |
| !! | AGAACATATCTTAGTTAAAT+AGG | + | chr5.4:21436571-21436590 | MS.gene070874:intron | 20.0% |
| !! | AGGAAAAAATTTATCACAAA+AGG | - | chr5.4:21434361-21434380 | None:intergenic | 20.0% |
| !! | ATTATTAACATGGGATAATT+TGG | - | chr5.4:21435072-21435091 | None:intergenic | 20.0% |
| !! | CATTCAATTATTAGATAAAC+AGG | - | chr5.4:21434731-21434750 | None:intergenic | 20.0% |
| !! | CTAATAAGTTAAACATTACT+CGG | + | chr5.4:21435320-21435339 | MS.gene070874:intron | 20.0% |
| !! | GATACATTAATGTATTAGAA+AGG | - | chr5.4:21434904-21434923 | None:intergenic | 20.0% |
| !! | GTGATAGATAAAAATGAAAA+AGG | + | chr5.4:21433957-21433976 | MS.gene070874:intron | 20.0% |
| !! | TTTAGTCAATTATAAATTGG+GGG | - | chr5.4:21434834-21434853 | None:intergenic | 20.0% |
| !! | TTTCACTTCAAACAATTTAA+AGG | + | chr5.4:21435036-21435055 | MS.gene070874:intron | 20.0% |
| !!! | AGTACTATTACATTTTTGTT+TGG | + | chr5.4:21434075-21434094 | MS.gene070874:intron | 20.0% |
| !!! | ATTGATTTACTAAAATCTCA+TGG | + | chr5.4:21436456-21436475 | MS.gene070874:CDS | 20.0% |
| !!! | GAGATTTTAGTAAATCAATT+AGG | - | chr5.4:21436455-21436474 | None:intergenic | 20.0% |
| !!! | GATTTTAGTAAATCAATTAG+GGG | - | chr5.4:21436453-21436472 | None:intergenic | 20.0% |
| !!! | GGATTTTTTTTTTTAAACGT+TGG | - | chr5.4:21435508-21435527 | None:intergenic | 20.0% |
| !!! | TTGTGATAAATTTTTTCCTT+GGG | + | chr5.4:21434362-21434381 | MS.gene070874:intron | 20.0% |
| !!! | TTTGTGATAAATTTTTTCCT+TGG | + | chr5.4:21434361-21434380 | MS.gene070874:intron | 20.0% |
| ! | AAAGATAACTTCGTATTTAC+AGG | + | chr5.4:21435012-21435031 | MS.gene070874:intron | 25.0% |
| ! | ACATTAATGTATTAGAAAGG+AGG | - | chr5.4:21434901-21434920 | None:intergenic | 25.0% |
| ! | ACATTACTCGGTAATTTATT+AGG | + | chr5.4:21435332-21435351 | MS.gene070874:intron | 25.0% |
| ! | AGACCTAACAATTATTAACA+TGG | - | chr5.4:21435082-21435101 | None:intergenic | 25.0% |
| ! | ATAGGTATAACTTCAATATC+AGG | - | chr5.4:21436785-21436804 | None:intergenic | 25.0% |
| ! | ATCCCATGTTAATAATTGTT+AGG | + | chr5.4:21435076-21435095 | MS.gene070874:intron | 25.0% |
| ! | ATTAATGTATTAGAAAGGAG+GGG | - | chr5.4:21434899-21434918 | None:intergenic | 25.0% |
| ! | CATTAATGTATTAGAAAGGA+GGG | - | chr5.4:21434900-21434919 | None:intergenic | 25.0% |
| ! | GAAAAAAAAATACATAGACC+TGG | - | chr5.4:21436252-21436271 | None:intergenic | 25.0% |
| ! | GAATATATCAGTCATACATA+TGG | + | chr5.4:21434655-21434674 | MS.gene070874:intron | 25.0% |
| ! | GACCTAACAATTATTAACAT+GGG | - | chr5.4:21435081-21435100 | None:intergenic | 25.0% |
| ! | TATAGCCCTCTTATATATTA+TGG | + | chr5.4:21436017-21436036 | MS.gene070874:CDS | 25.0% |
| ! | TATTATTGACACAATTTCTG+CGG | + | chr5.4:21436413-21436432 | MS.gene070874:CDS | 25.0% |
| ! | TCAAACTAAATCATTTGAGA+CGG | + | chr5.4:21435610-21435629 | MS.gene070874:intron | 25.0% |
| ! | TGAGTCCATAATATATAAGA+GGG | - | chr5.4:21436025-21436044 | None:intergenic | 25.0% |
| ! | TGATATTGAAGTTATACCTA+TGG | + | chr5.4:21436784-21436803 | MS.gene070874:CDS | 25.0% |
| ! | TGTCTATGTTAGTAATTCAT+AGG | + | chr5.4:21436332-21436351 | MS.gene070874:intron | 25.0% |
| ! | TTGAGTCCATAATATATAAG+AGG | - | chr5.4:21436026-21436045 | None:intergenic | 25.0% |
| ! | TTTAGCTAAAAGTGACTAAA+AGG | - | chr5.4:21434945-21434964 | None:intergenic | 25.0% |
| !! | AAGTAGAGTTTTCTTAAACA+TGG | - | chr5.4:21434623-21434642 | None:intergenic | 25.0% |
| !! | ACTTATTCCTCAAAATGTTT+TGG | - | chr5.4:21434007-21434026 | None:intergenic | 25.0% |
| !! | CGAGTAATGTTTAACTTATT+AGG | - | chr5.4:21435322-21435341 | None:intergenic | 25.0% |
| !! | GATATTTAACATCTGATTTG+AGG | - | chr5.4:21436838-21436857 | None:intergenic | 25.0% |
| !! | TATTTTCTAACCGTGATTTA+GGG | + | chr5.4:21435136-21435155 | MS.gene070874:intron | 25.0% |
| !!! | AATGGATTTGTTTTGGTAAT+CGG | - | chr5.4:21435665-21435684 | None:intergenic | 25.0% |
| !!! | AATTGTTAGGTCTTTTTTAG+AGG | + | chr5.4:21435089-21435108 | MS.gene070874:intron | 25.0% |
| !!! | AGCTCTAAAAGATGATATTT+GGG | + | chr5.4:21434791-21434810 | MS.gene070874:intron | 25.0% |
| !!! | TTTTTTTTCAACTTGGTATC+TGG | + | chr5.4:21436263-21436282 | MS.gene070874:intron | 25.0% |
| AATCATTAGTCCCTAAATCA+CGG | - | chr5.4:21435149-21435168 | None:intergenic | 30.0% | |
| ACAATCGGTATAAGAATTAC+AGG | + | chr5.4:21435694-21435713 | MS.gene070874:intron | 30.0% | |
| AGATATGCAAACATTAGAGA+TGG | + | chr5.4:21433712-21433731 | MS.gene070874:intron | 30.0% | |
| ATGTATTGTAGGGAGAAAAA+TGG | + | chr5.4:21436685-21436704 | MS.gene070874:intron | 30.0% | |
| TAAATCAATTAGGGGTAAGA+GGG | - | chr5.4:21436445-21436464 | None:intergenic | 30.0% | |
| TAAATCACATATATACGTCC+AGG | + | chr5.4:21436231-21436250 | MS.gene070874:intron | 30.0% | |
| TACATCACCAAACAAAAAGA+AGG | + | chr5.4:21436145-21436164 | MS.gene070874:CDS | 30.0% | |
| TCCATTTCCATTCTAACAAT+CGG | + | chr5.4:21435679-21435698 | MS.gene070874:intron | 30.0% | |
| TGCTGAAATTAAATGCAACT+TGG | - | chr5.4:21433842-21433861 | None:intergenic | 30.0% | |
| TGTTAAGGCTAACAATGTTT+GGG | + | chr5.4:21434189-21434208 | MS.gene070874:intron | 30.0% | |
| TTAGAAATGAATCAGCTTTG+AGG | - | chr5.4:21436184-21436203 | None:intergenic | 30.0% | |
| TTTACTTCTTATAGGGAAAC+AGG | + | chr5.4:21434450-21434469 | MS.gene070874:intron | 30.0% | |
| ! | ATTGCTTCCTTCTTTTTGTT+TGG | - | chr5.4:21436155-21436174 | None:intergenic | 30.0% |
| ! | CTATTTTCTAACCGTGATTT+AGG | + | chr5.4:21435135-21435154 | MS.gene070874:intron | 30.0% |
| ! | GTAAAATTTGCCAAAGCTTT+TGG | + | chr5.4:21436101-21436120 | MS.gene070874:CDS | 30.0% |
| ! | TATGGTGCTAAATATAGTGA+TGG | + | chr5.4:21435873-21435892 | MS.gene070874:CDS | 30.0% |
| ! | TCTTATACCGATTGTTAGAA+TGG | - | chr5.4:21435689-21435708 | None:intergenic | 30.0% |
| ! | TTTGTTTGCTACTGTTGTAT+TGG | - | chr5.4:21433785-21433804 | None:intergenic | 30.0% |
| !! | GAATGGAAATGGATTTGTTT+TGG | - | chr5.4:21435672-21435691 | None:intergenic | 30.0% |
| !! | GAGCTCTAAAAGATGATATT+TGG | + | chr5.4:21434790-21434809 | MS.gene070874:intron | 30.0% |
| !! | TATCGATTTGTGATTGACAT+TGG | + | chr5.4:21436854-21436873 | MS.gene070874:CDS | 30.0% |
| !! | TTCAAAGTTGATGACAAAGT+GGG | + | chr5.4:21435765-21435784 | MS.gene070874:CDS | 30.0% |
| !! | TTTCAAAGTTGATGACAAAG+TGG | + | chr5.4:21435764-21435783 | MS.gene070874:CDS | 30.0% |
| !!! | TTCCTCAAAATGTTTTGGTT+AGG | - | chr5.4:21434002-21434021 | None:intergenic | 30.0% |
| !!! | TTTGGACTTTTTCAGAGATT+AGG | - | chr5.4:21434241-21434260 | None:intergenic | 30.0% |
| AATTACAGGCACGAAATTGT+TGG | + | chr5.4:21435708-21435727 | MS.gene070874:intron | 35.0% | |
| ACCGATTGTTAGAATGGAAA+TGG | - | chr5.4:21435683-21435702 | None:intergenic | 35.0% | |
| ATAAAGTAGAAACCTTACCC+TGG | - | chr5.4:21434576-21434595 | None:intergenic | 35.0% | |
| ATATGCTTACCCACTAGTAA+AGG | - | chr5.4:21436534-21436553 | None:intergenic | 35.0% | |
| ATCTCATGGAAAGCTTGTAT+TGG | + | chr5.4:21436470-21436489 | MS.gene070874:CDS | 35.0% | |
| ATTTCTAATTAGCCGTGATC+CGG | + | chr5.4:21436196-21436215 | MS.gene070874:CDS | 35.0% | |
| CACATTAACTCCAAAAGCTT+TGG | - | chr5.4:21436114-21436133 | None:intergenic | 35.0% | |
| CGGTTAGAAAATAGACGATT+AGG | - | chr5.4:21435129-21435148 | None:intergenic | 35.0% | |
| CTGTTAAGGCTAACAATGTT+TGG | + | chr5.4:21434188-21434207 | MS.gene070874:intron | 35.0% | |
| GATAAAAGAGTCATATGTGG+AGG | - | chr5.4:21434309-21434328 | None:intergenic | 35.0% | |
| GGAAAATACATACTATCTGC+AGG | + | chr5.4:21433733-21433752 | MS.gene070874:intron | 35.0% | |
| GGATTATGTCAATACAGCAA+TGG | + | chr5.4:21436805-21436824 | MS.gene070874:CDS | 35.0% | |
| GTAAATCAATTAGGGGTAAG+AGG | - | chr5.4:21436446-21436465 | None:intergenic | 35.0% | |
| GTGGATAAAAGAGTCATATG+TGG | - | chr5.4:21434312-21434331 | None:intergenic | 35.0% | |
| TACTCACAAGAGGAGAAAAT+TGG | + | chr5.4:21435233-21435252 | MS.gene070874:intron | 35.0% | |
| TGATTTACCTGCATTTGATC+CGG | - | chr5.4:21436218-21436237 | None:intergenic | 35.0% | |
| ! | AACCTTCTGGAGAAATTGAA+AGG | - | chr5.4:21433606-21433625 | None:intergenic | 35.0% |
| ! | ACCTTCTGGAGAAATTGAAA+GGG | - | chr5.4:21433605-21433624 | None:intergenic | 35.0% |
| ! | GACCTAACCAAAACATTTTG+AGG | + | chr5.4:21433997-21434016 | MS.gene070874:intron | 35.0% |
| ! | GCTGTATTGACATAATCCAT+AGG | - | chr5.4:21436803-21436822 | None:intergenic | 35.0% |
| ! | GTGGTAAGGTATTAGGTATA+CGG | - | chr5.4:21435956-21435975 | None:intergenic | 35.0% |
| ! | TGGCAAATTTTACAGCCATA+TGG | - | chr5.4:21436094-21436113 | None:intergenic | 35.0% |
| !! | AGTGATGGAAGTATCACATA+TGG | + | chr5.4:21435888-21435907 | MS.gene070874:CDS | 35.0% |
| AAACCTTACCCTGGAACTAA+TGG | - | chr5.4:21434567-21434586 | None:intergenic | 40.0% | |
| AACCTTACCCTGGAACTAAT+GGG | - | chr5.4:21434566-21434585 | None:intergenic | 40.0% | |
| AAGAGGTAAAGTGAACCTTC+TGG | - | chr5.4:21433619-21433638 | None:intergenic | 40.0% | |
| AATTGTTGGTGTAGTGACTG+AGG | + | chr5.4:21435722-21435741 | MS.gene070874:CDS | 40.0% | |
| ACTGCATGCATGACAAACAA+TGG | + | chr5.4:21434680-21434699 | MS.gene070874:intron | 40.0% | |
| AGAAAAATGGTAGCTGGTAG+TGG | + | chr5.4:21436698-21436717 | MS.gene070874:CDS | 40.0% | |
| AGGGCTATAAACAGTGATTC+CGG | - | chr5.4:21436006-21436025 | None:intergenic | 40.0% | |
| CAAGACTGTCATCACAATCT+TGG | - | chr5.4:21435824-21435843 | None:intergenic | 40.0% | |
| GGTATCTGGTCACTAATTTG+AGG | + | chr5.4:21436277-21436296 | MS.gene070874:intron | 40.0% | |
| TAGACATGAACGTTCGTTAG+TGG | - | chr5.4:21436318-21436337 | None:intergenic | 40.0% | |
| TATTATGGACTCAACAAGCC+TGG | + | chr5.4:21436032-21436051 | MS.gene070874:CDS | 40.0% | |
| TGAATACGAGCATCCAAAGA+AGG | + | chr5.4:21433539-21433558 | MS.gene070874:CDS | 40.0% | |
| TTCTCTCTCATACTCACAAG+AGG | + | chr5.4:21435223-21435242 | MS.gene070874:intron | 40.0% | |
| TTCTTTGGATGCTCGTATTC+AGG | - | chr5.4:21433540-21433559 | None:intergenic | 40.0% | |
| ! | ATAATTTTCTAGGCCGCAAC+GGG | + | chr5.4:21436378-21436397 | MS.gene070874:intron | 40.0% |
| ! | CATGGAAAGCTTGTATTGGT+TGG | + | chr5.4:21436474-21436493 | MS.gene070874:CDS | 40.0% |
| ! | CCTTCTGGAGAAATTGAAAG+GGG | - | chr5.4:21433604-21433623 | None:intergenic | 40.0% |
| ! | CTGTTGTATTGGTGTTTGCA+TGG | - | chr5.4:21433774-21433793 | None:intergenic | 40.0% |
| ! | GATAATTTTCTAGGCCGCAA+CGG | + | chr5.4:21436377-21436396 | MS.gene070874:intron | 40.0% |
| ! | GCATCAAGTGGTAAGGTATT+AGG | - | chr5.4:21435963-21435982 | None:intergenic | 40.0% |
| !! | CATTCAAAGTGTTGTACTGC+GGG | + | chr5.4:21434487-21434506 | MS.gene070874:CDS | 40.0% |
| !! | GATGGAAGTATCACATATGG+AGG | + | chr5.4:21435891-21435910 | MS.gene070874:CDS | 40.0% |
| !! | GCATTCAAAGTGTTGTACTG+CGG | + | chr5.4:21434486-21434505 | MS.gene070874:CDS | 40.0% |
| AGAGAAGCCTCTTGAGTTAC+CGG | + | chr5.4:21436503-21436522 | MS.gene070874:CDS | 45.0% | |
| ATCCAAAGAAGGCCTTTGGT+TGG | + | chr5.4:21433550-21433569 | MS.gene070874:CDS | 45.0% | |
| CCCCTTTCAATTTCTCCAGA+AGG | + | chr5.4:21433601-21433620 | MS.gene070874:CDS | 45.0% | |
| GATTATATAAGGGCGACCCA+AGG | - | chr5.4:21434381-21434400 | None:intergenic | 45.0% | |
| GTAACTCAAGAGGCTTCTCT+GGG | - | chr5.4:21436503-21436522 | None:intergenic | 45.0% | |
| GTAGGGAGAAAAATGGTAGC+TGG | + | chr5.4:21436692-21436711 | MS.gene070874:intron | 45.0% | |
| TAACTCAAGAGGCTTCTCTG+GGG | - | chr5.4:21436502-21436521 | None:intergenic | 45.0% | |
| TACCCATTAGTTCCAGGGTA+AGG | + | chr5.4:21434561-21434580 | MS.gene070874:intron | 45.0% | |
| TCCAAAGAAGGCCTTTGGTT+GGG | + | chr5.4:21433551-21433570 | MS.gene070874:CDS | 45.0% | |
| ! | AACAAGCCTGGTCTTCATGT+GGG | + | chr5.4:21436044-21436063 | MS.gene070874:CDS | 45.0% |
| ! | AACATCGACTGGTCGAAGTT+GGG | - | chr5.4:21434264-21434283 | None:intergenic | 45.0% |
| ! | TAATTTTCTAGGCCGCAACG+GGG | + | chr5.4:21436379-21436398 | MS.gene070874:intron | 45.0% |
| ! | TCGTTAGTGGACAGTGGAAT+TGG | - | chr5.4:21436305-21436324 | None:intergenic | 45.0% |
| ! | TTACCCTGGAACTAATGGGT+AGG | - | chr5.4:21434562-21434581 | None:intergenic | 45.0% |
| !! | AATGGTAGCTGGTAGTGGAA+TGG | + | chr5.4:21436703-21436722 | MS.gene070874:CDS | 45.0% |
| !! | AGTTGATGACAAAGTGGGTG+TGG | + | chr5.4:21435770-21435789 | MS.gene070874:CDS | 45.0% |
| !! | ATGGTAGCTGGTAGTGGAAT+GGG | + | chr5.4:21436704-21436723 | MS.gene070874:CDS | 45.0% |
| !! | GTTGATGACAAAGTGGGTGT+GGG | + | chr5.4:21435771-21435790 | MS.gene070874:CDS | 45.0% |
| !! | TAATAATTAAAATATGTTAT+AGG | + | chr5.4:21435573-21435592 | MS.gene070874:intron | 5.0% |
| !!! | AAAAATTGATTTTTTTTTTT+TGG | + | chr5.4:21435435-21435454 | MS.gene070874:intron | 5.0% |
| AAACAGTGATTCCGGCGCAA+AGG | - | chr5.4:21435998-21436017 | None:intergenic | 50.0% | |
| AAAGGGGAGAGAACACCAGA+AGG | - | chr5.4:21433588-21433607 | None:intergenic | 50.0% | |
| ACTATCCAGCCAACATCGAC+TGG | - | chr5.4:21434275-21434294 | None:intergenic | 50.0% | |
| ATCTCTAGCTGCCCAACCAA+AGG | - | chr5.4:21433565-21433584 | None:intergenic | 50.0% | |
| CAACTTCGACCAGTCGATGT+TGG | + | chr5.4:21434263-21434282 | MS.gene070874:intron | 50.0% | |
| CCACCTACCCATTAGTTCCA+GGG | + | chr5.4:21434556-21434575 | MS.gene070874:CDS | 50.0% | |
| CCTGCATTTGATCCGGATCA+CGG | - | chr5.4:21436211-21436230 | None:intergenic | 50.0% | |
| GAGCATCCAAAGAAGGCCTT+TGG | + | chr5.4:21433546-21433565 | MS.gene070874:CDS | 50.0% | |
| GGTAACTCAAGAGGCTTCTC+TGG | - | chr5.4:21436504-21436523 | None:intergenic | 50.0% | |
| GTTGGTGTAGTGACTGAGGT+GGG | + | chr5.4:21435726-21435745 | MS.gene070874:CDS | 50.0% | |
| TAGTGGAATGGGAGGGATGA+AGG | + | chr5.4:21436715-21436734 | MS.gene070874:CDS | 50.0% | |
| TCCACCTACCCATTAGTTCC+AGG | + | chr5.4:21434555-21434574 | MS.gene070874:CDS | 50.0% | |
| TGTTGGTGTAGTGACTGAGG+TGG | + | chr5.4:21435725-21435744 | MS.gene070874:CDS | 50.0% | |
| ! | CAACAAGCCTGGTCTTCATG+TGG | + | chr5.4:21436043-21436062 | MS.gene070874:CDS | 50.0% |
| ! | CAACATCGACTGGTCGAAGT+TGG | - | chr5.4:21434265-21434284 | None:intergenic | 50.0% |
| ! | GAACGTTCGTTAGTGGACAG+TGG | - | chr5.4:21436311-21436330 | None:intergenic | 50.0% |
| !! | TAGCTGGTAGTGGAATGGGA+GGG | + | chr5.4:21436708-21436727 | MS.gene070874:CDS | 50.0% |
| ACCACACCCACATGAAGACC+AGG | - | chr5.4:21436053-21436072 | None:intergenic | 55.0% | |
| ACCATCCAAAGTCCCCGTTG+CGG | - | chr5.4:21436394-21436413 | None:intergenic | 55.0% | |
| ACCGGCATGGCCTTTACTAG+TGG | + | chr5.4:21436521-21436540 | MS.gene070874:CDS | 55.0% | |
| AGCAGCGGCATCAAGTGGTA+AGG | - | chr5.4:21435970-21435989 | None:intergenic | 55.0% | |
| AGCCTCTTGAGTTACCGGCA+TGG | + | chr5.4:21436508-21436527 | MS.gene070874:CDS | 55.0% | |
| ATCCGTTCTTGGCCATGTGG+AGG | - | chr5.4:21434527-21434546 | None:intergenic | 55.0% | |
| CACATGGCCAAGAACGGATG+GGG | + | chr5.4:21434528-21434547 | MS.gene070874:CDS | 55.0% | |
| CCACATGGCCAAGAACGGAT+GGG | + | chr5.4:21434527-21434546 | MS.gene070874:CDS | 55.0% | |
| CCCACTAGTAAAGGCCATGC+CGG | - | chr5.4:21436525-21436544 | None:intergenic | 55.0% | |
| CCGGCATGGCCTTTACTAGT+GGG | + | chr5.4:21436522-21436541 | MS.gene070874:CDS | 55.0% | |
| CCGTGATCCGGATCAAATGC+AGG | + | chr5.4:21436208-21436227 | MS.gene070874:CDS | 55.0% | |
| GACCTCCACATGGCCAAGAA+CGG | + | chr5.4:21434522-21434541 | MS.gene070874:CDS | 55.0% | |
| GCCCAACCAAAGGCCTTCTT+TGG | - | chr5.4:21433555-21433574 | None:intergenic | 55.0% | |
| GGTCTTCATGTGGGTGTGGT+TGG | + | chr5.4:21436053-21436072 | MS.gene070874:CDS | 55.0% | |
| GTACTGCGGGATATGCCACA+CGG | + | chr5.4:21434500-21434519 | MS.gene070874:CDS | 55.0% | |
| GTGGGTGTGGGATGCTTAGT+TGG | + | chr5.4:21435783-21435802 | MS.gene070874:CDS | 55.0% | |
| TCCACATGGCCAAGAACGGA+TGG | + | chr5.4:21434526-21434545 | MS.gene070874:CDS | 55.0% | |
| TGGGCAGCTAGAGATCCTTC+TGG | + | chr5.4:21433570-21433589 | MS.gene070874:CDS | 55.0% | |
| TTCGACCAGTCGATGTTGGC+TGG | + | chr5.4:21434267-21434286 | MS.gene070874:intron | 55.0% | |
| ! | CCCTGGAACTAATGGGTAGG+TGG | - | chr5.4:21434559-21434578 | None:intergenic | 55.0% |
| ! | CGACTGGTCGAAGTTGGGTT+TGG | - | chr5.4:21434259-21434278 | None:intergenic | 55.0% |
| ! | TGGAGGCTACTCTGACTCGA+TGG | + | chr5.4:21435908-21435927 | MS.gene070874:CDS | 55.0% |
| !! | GTAGCTGGTAGTGGAATGGG+AGG | + | chr5.4:21436707-21436726 | MS.gene070874:CDS | 55.0% |
| AGAGGAGCAGCGGCATCAAG+TGG | - | chr5.4:21435975-21435994 | None:intergenic | 60.0% | |
| ATGCCACACGGACCTCCACA+TGG | + | chr5.4:21434512-21434531 | MS.gene070874:CDS | 60.0% | |
| CCCATCCGTTCTTGGCCATG+TGG | - | chr5.4:21434530-21434549 | None:intergenic | 60.0% | |
| GGATGTGCCCCATCCGTTCT+TGG | - | chr5.4:21434538-21434557 | None:intergenic | 60.0% | |
| GGCCATGCCGGTAACTCAAG+AGG | - | chr5.4:21436513-21436532 | None:intergenic | 60.0% | |
| GTGATTCCGGCGCAAAGGAG+AGG | - | chr5.4:21435993-21436012 | None:intergenic | 60.0% | |
| ! | GCCTGGTCTTCATGTGGGTG+TGG | + | chr5.4:21436049-21436068 | MS.gene070874:CDS | 60.0% |
| ! | TCATGTGGGTGTGGTTGGCC+TGG | + | chr5.4:21436058-21436077 | MS.gene070874:CDS | 60.0% |
| !! | CATGTGGGTGTGGTTGGCCT+GGG | + | chr5.4:21436059-21436078 | MS.gene070874:CDS | 60.0% |
| CCATATGGCCCAACCCACCC+AGG | - | chr5.4:21436079-21436098 | None:intergenic | 65.0% | |
| CTAGGCCGCAACGGGGACTT+TGG | + | chr5.4:21436386-21436405 | MS.gene070874:intron | 65.0% | |
| GCCGCAACGGGGACTTTGGA+TGG | + | chr5.4:21436390-21436409 | MS.gene070874:CDS | 65.0% | |
| GCTGCTCCTCTCCTTTGCGC+CGG | + | chr5.4:21435984-21436003 | MS.gene070874:CDS | 65.0% | |
| GGCGCAAAGGAGAGGAGCAG+CGG | - | chr5.4:21435985-21436004 | None:intergenic | 65.0% | |
| TGGCCATGTGGAGGTCCGTG+TGG | - | chr5.4:21434518-21434537 | None:intergenic | 65.0% | |
| !! | CCTGGGTGGGTTGGGCCATA+TGG | + | chr5.4:21436076-21436095 | MS.gene070874:CDS | 65.0% |
| !! | GTGGTTGGCCTGGGTGGGTT+GGG | + | chr5.4:21436068-21436087 | MS.gene070874:CDS | 65.0% |
| !! | TGGGTGTGGTTGGCCTGGGT+GGG | + | chr5.4:21436063-21436082 | MS.gene070874:CDS | 65.0% |
| !! | TGTGGTTGGCCTGGGTGGGT+TGG | + | chr5.4:21436067-21436086 | MS.gene070874:CDS | 65.0% |
| !! | GTGGGTGTGGTTGGCCTGGG+TGG | + | chr5.4:21436062-21436081 | MS.gene070874:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 21433525 | 21436901 | 21433525 | ID=MS.gene070874 |
| chr5.4 | mRNA | 21433525 | 21436901 | 21433525 | ID=MS.gene070874.t1;Parent=MS.gene070874 |
| chr5.4 | exon | 21433525 | 21433622 | 21433525 | ID=MS.gene070874.t1.exon1;Parent=MS.gene070874.t1 |
| chr5.4 | CDS | 21433525 | 21433622 | 21433525 | ID=cds.MS.gene070874.t1;Parent=MS.gene070874.t1 |
| chr5.4 | exon | 21434464 | 21434577 | 21434464 | ID=MS.gene070874.t1.exon2;Parent=MS.gene070874.t1 |
| chr5.4 | CDS | 21434464 | 21434577 | 21434464 | ID=cds.MS.gene070874.t1;Parent=MS.gene070874.t1 |
| chr5.4 | exon | 21435716 | 21436229 | 21435716 | ID=MS.gene070874.t1.exon3;Parent=MS.gene070874.t1 |
| chr5.4 | CDS | 21435716 | 21436229 | 21435716 | ID=cds.MS.gene070874.t1;Parent=MS.gene070874.t1 |
| chr5.4 | exon | 21436390 | 21436543 | 21436390 | ID=MS.gene070874.t1.exon4;Parent=MS.gene070874.t1 |
| chr5.4 | CDS | 21436390 | 21436543 | 21436390 | ID=cds.MS.gene070874.t1;Parent=MS.gene070874.t1 |
| chr5.4 | exon | 21436696 | 21436901 | 21436696 | ID=MS.gene070874.t1.exon5;Parent=MS.gene070874.t1 |
| chr5.4 | CDS | 21436696 | 21436901 | 21436696 | ID=cds.MS.gene070874.t1;Parent=MS.gene070874.t1 |
| Gene Sequence |
| Protein sequence |
