Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065692.t1 | P31656.1 | 99.7 | 358 | 1 | 0 | 1 | 358 | 1 | 358 | 1.70E-203 | 718.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065692.t1 | P31656 | 99.7 | 358 | 1 | 0 | 1 | 358 | 1 | 358 | 4.0e-206 | 718.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065692.t1 | A0A072VPZ8 | 98.9 | 358 | 4 | 0 | 1 | 358 | 1 | 358 | 3.0e-202 | 713.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050646 | MS.gene065692 | 0.805774 | 1.13E-49 | -1.69E-46 |
| MS.gene057174 | MS.gene065692 | 0.81935 | 1.22E-52 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065692.t1 | MTR_1g107425 | 98.883 | 358 | 4 | 0 | 1 | 358 | 1 | 358 | 0.0 | 724 |
| MS.gene065692.t1 | MTR_1g107425 | 97.973 | 296 | 6 | 0 | 1 | 296 | 1 | 296 | 0.0 | 593 |
| MS.gene065692.t1 | MTR_5g031360 | 51.862 | 349 | 168 | 0 | 6 | 354 | 10 | 358 | 3.55e-124 | 362 |
| MS.gene065692.t1 | MTR_5g031190 | 51.312 | 343 | 167 | 0 | 9 | 351 | 11 | 353 | 6.30e-123 | 358 |
| MS.gene065692.t1 | MTR_5g031300 | 52.770 | 343 | 162 | 0 | 9 | 351 | 12 | 354 | 6.64e-122 | 356 |
| MS.gene065692.t1 | MTR_5g031250 | 52.507 | 339 | 161 | 0 | 13 | 351 | 15 | 353 | 1.57e-121 | 355 |
| MS.gene065692.t1 | MTR_5g031310 | 50.729 | 343 | 169 | 0 | 9 | 351 | 12 | 354 | 2.53e-120 | 352 |
| MS.gene065692.t1 | MTR_4g115300 | 51.622 | 339 | 164 | 0 | 13 | 351 | 15 | 353 | 2.58e-120 | 352 |
| MS.gene065692.t1 | MTR_5g031305 | 50.146 | 343 | 171 | 0 | 9 | 351 | 12 | 354 | 6.89e-120 | 351 |
| MS.gene065692.t1 | MTR_5g031230 | 52.507 | 339 | 161 | 0 | 13 | 351 | 15 | 353 | 1.80e-119 | 350 |
| MS.gene065692.t1 | MTR_5g031390 | 50.729 | 343 | 169 | 0 | 9 | 351 | 11 | 353 | 7.16e-119 | 348 |
| MS.gene065692.t1 | MTR_8g068190 | 52.478 | 343 | 163 | 0 | 9 | 351 | 11 | 353 | 1.21e-118 | 347 |
| MS.gene065692.t1 | MTR_5g031210 | 53.097 | 339 | 159 | 0 | 13 | 351 | 15 | 353 | 2.09e-116 | 342 |
| MS.gene065692.t1 | MTR_5g031430 | 51.297 | 347 | 169 | 0 | 8 | 354 | 10 | 356 | 9.38e-114 | 335 |
| MS.gene065692.t1 | MTR_5g031180 | 51.020 | 343 | 168 | 0 | 9 | 351 | 11 | 353 | 1.63e-112 | 332 |
| MS.gene065692.t1 | MTR_1g025950 | 49.280 | 347 | 175 | 1 | 9 | 354 | 10 | 356 | 6.14e-109 | 323 |
| MS.gene065692.t1 | MTR_8g092630 | 50.294 | 340 | 168 | 1 | 15 | 354 | 74 | 412 | 4.82e-107 | 320 |
| MS.gene065692.t1 | MTR_2g009810 | 45.349 | 344 | 186 | 2 | 12 | 354 | 62 | 404 | 2.93e-99 | 300 |
| MS.gene065692.t1 | MTR_5g031250 | 55.895 | 229 | 101 | 0 | 11 | 239 | 13 | 241 | 1.39e-83 | 254 |
| MS.gene065692.t1 | MTR_2g009820 | 41.463 | 246 | 138 | 4 | 114 | 354 | 8 | 252 | 2.14e-51 | 172 |
| MS.gene065692.t1 | MTR_5g031290 | 43.636 | 110 | 62 | 0 | 245 | 354 | 80 | 189 | 2.01e-26 | 104 |
| MS.gene065692.t1 | MTR_5g031290 | 52.174 | 69 | 32 | 1 | 9 | 76 | 11 | 79 | 1.21e-18 | 83.2 |
| MS.gene065692.t1 | MTR_8g095220 | 25.269 | 372 | 242 | 10 | 13 | 351 | 56 | 424 | 5.67e-24 | 102 |
| MS.gene065692.t1 | MTR_8g095220 | 28.689 | 244 | 149 | 6 | 13 | 234 | 56 | 296 | 5.97e-21 | 92.4 |
| MS.gene065692.t1 | MTR_5g087710 | 25.000 | 340 | 221 | 9 | 35 | 342 | 44 | 381 | 6.56e-13 | 69.7 |
| MS.gene065692.t1 | MTR_3g089977 | 23.582 | 335 | 226 | 8 | 37 | 342 | 37 | 370 | 4.27e-11 | 63.9 |
| MS.gene065692.t1 | MTR_3g089940 | 23.881 | 335 | 225 | 8 | 37 | 342 | 37 | 370 | 4.34e-11 | 63.9 |
| MS.gene065692.t1 | MTR_3g089940 | 23.881 | 335 | 225 | 8 | 37 | 342 | 37 | 370 | 4.34e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065692.t1 | AT3G19450 | 76.257 | 358 | 85 | 0 | 1 | 358 | 1 | 358 | 0.0 | 523 |
| MS.gene065692.t1 | AT4G34230 | 77.311 | 357 | 80 | 1 | 1 | 357 | 1 | 356 | 4.36e-178 | 498 |
| MS.gene065692.t1 | AT4G34230 | 77.031 | 357 | 81 | 1 | 1 | 357 | 1 | 356 | 4.53e-177 | 496 |
| MS.gene065692.t1 | AT2G21890 | 49.435 | 354 | 178 | 1 | 6 | 358 | 2 | 355 | 1.18e-121 | 356 |
| MS.gene065692.t1 | AT2G21730 | 49.296 | 355 | 178 | 2 | 6 | 358 | 2 | 356 | 2.94e-120 | 352 |
| MS.gene065692.t1 | AT4G39330 | 50.877 | 342 | 168 | 0 | 13 | 354 | 15 | 356 | 3.29e-120 | 352 |
| MS.gene065692.t1 | AT4G37970 | 48.830 | 342 | 175 | 0 | 13 | 354 | 16 | 357 | 2.16e-118 | 347 |
| MS.gene065692.t1 | AT4G37990 | 50.857 | 350 | 172 | 0 | 5 | 354 | 3 | 352 | 5.46e-114 | 336 |
| MS.gene065692.t1 | AT4G37980 | 47.714 | 350 | 183 | 0 | 5 | 354 | 3 | 352 | 3.44e-108 | 321 |
| MS.gene065692.t1 | AT1G72680 | 43.503 | 354 | 199 | 1 | 1 | 354 | 1 | 353 | 4.02e-97 | 293 |
| MS.gene065692.t1 | AT4G39330 | 49.481 | 289 | 146 | 0 | 13 | 301 | 15 | 303 | 1.61e-96 | 289 |
| MS.gene065692.t1 | AT4G37970 | 47.857 | 280 | 146 | 0 | 13 | 292 | 16 | 295 | 2.08e-89 | 271 |
| MS.gene065692.t1 | AT4G37980 | 48.084 | 287 | 148 | 1 | 5 | 290 | 3 | 289 | 4.14e-83 | 254 |
| MS.gene065692.t1 | AT4G37970 | 50.000 | 228 | 114 | 0 | 13 | 240 | 16 | 243 | 7.09e-75 | 232 |
| MS.gene065692.t1 | AT4G37970 | 50.000 | 228 | 114 | 0 | 13 | 240 | 16 | 243 | 1.12e-74 | 232 |
| MS.gene065692.t1 | AT5G63620 | 26.005 | 373 | 238 | 12 | 13 | 351 | 58 | 426 | 4.93e-24 | 102 |
| MS.gene065692.t1 | AT5G63620 | 25.737 | 373 | 239 | 12 | 13 | 351 | 58 | 426 | 9.44e-24 | 102 |
| MS.gene065692.t1 | AT5G63620 | 28.870 | 239 | 145 | 6 | 13 | 229 | 58 | 293 | 1.71e-21 | 94.0 |
| MS.gene065692.t1 | AT1G32780 | 25.439 | 342 | 215 | 10 | 37 | 339 | 37 | 377 | 4.16e-14 | 73.2 |
| MS.gene065692.t1 | AT1G22430 | 26.254 | 339 | 211 | 13 | 37 | 340 | 42 | 376 | 1.75e-13 | 71.2 |
| MS.gene065692.t1 | AT1G22430 | 26.254 | 339 | 211 | 13 | 37 | 340 | 42 | 376 | 1.75e-13 | 71.2 |
| MS.gene065692.t1 | AT1G64710 | 23.512 | 336 | 224 | 10 | 37 | 340 | 13 | 347 | 1.33e-11 | 65.5 |
| MS.gene065692.t1 | AT1G64710 | 23.512 | 336 | 224 | 10 | 37 | 340 | 36 | 370 | 1.50e-11 | 65.5 |
| MS.gene065692.t1 | AT4G22110 | 24.478 | 335 | 218 | 11 | 37 | 338 | 43 | 375 | 1.93e-11 | 65.1 |
| MS.gene065692.t1 | AT4G22110 | 24.478 | 335 | 218 | 11 | 37 | 338 | 43 | 375 | 1.93e-11 | 65.1 |
Find 87 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAGTCCACTTTCACATTT+TGG | 0.140332 | 1.4:+82839993 | MS.gene065692:CDS |
| CAGAGGAGATGTTGGAGTTT+TGG | 0.195897 | 1.4:+82840770 | MS.gene065692:CDS |
| CCCGGGAACCATAGGATAAT+TGG | 0.253265 | 1.4:-82838916 | None:intergenic |
| CATGATTGAAATTGTAACTA+TGG | 0.253443 | 1.4:+82840813 | MS.gene065692:CDS |
| CTTTCATTGCTCAAAATTGA+TGG | 0.339894 | 1.4:+82840272 | MS.gene065692:CDS |
| TCCAATTATCCTATGGTTCC+CGG | 0.349038 | 1.4:+82838915 | MS.gene065692:CDS |
| TGGGCTAAGAGGTGGAATAT+TGG | 0.354895 | 1.4:+82840028 | MS.gene065692:CDS |
| TCAATTACTGGAAGCTTTGT+TGG | 0.375046 | 1.4:+82840733 | MS.gene065692:CDS |
| GGGCTAAGAGGTGGAATATT+GGG | 0.377765 | 1.4:+82840029 | MS.gene065692:CDS |
| CATAGTTACAATTTCAATCA+TGG | 0.394791 | 1.4:-82840812 | None:intergenic |
| GGCTCAAGAGGGTGACCAAC+AGG | 0.414159 | 1.4:-82840245 | None:intergenic |
| TCTTCAATTTGTTACACCTA+TGG | 0.415794 | 1.4:+82840328 | MS.gene065692:CDS |
| AAAGAGGCACTTGAGGATCT+TGG | 0.422297 | 1.4:+82840140 | MS.gene065692:CDS |
| TGATGGGAAATTGATCTTGA+TGG | 0.430428 | 1.4:+82840289 | MS.gene065692:CDS |
| AACAATGGTGCAACTTGCTC+TGG | 0.430947 | 1.4:-82839951 | None:intergenic |
| TGCTCTGGTGCCAATCCCTC+TGG | 0.434175 | 1.4:-82839936 | None:intergenic |
| CAATTACTGGAAGCTTTGTT+GGG | 0.441579 | 1.4:+82840734 | MS.gene065692:CDS |
| GTGAAAGTAGCAAAGGCATT+AGG | 0.442216 | 1.4:+82840077 | MS.gene065692:CDS |
| AGAAGAATGATGTGAGGTAT+AGG | 0.457166 | 1.4:+82840866 | MS.gene065692:CDS |
| CACCTGAGAGTGTAGGTGTA+TGG | 0.459569 | 1.4:-82838705 | None:intergenic |
| GTAGGGAGGAAGTCAATTAC+TGG | 0.465862 | 1.4:+82840721 | MS.gene065692:intron |
| TTGTTAGCTCAGATACTGTT+GGG | 0.467194 | 1.4:+82840177 | MS.gene065692:CDS |
| AATACTGTAACAAGAAGATC+TGG | 0.467552 | 1.4:+82839258 | MS.gene065692:CDS |
| CTTGTTAGCTCAGATACTGT+TGG | 0.468029 | 1.4:+82840176 | MS.gene065692:CDS |
| GGTGTATGGAGTGAGAATTC+CGG | 0.472955 | 1.4:-82838691 | None:intergenic |
| TGGCATGTCCAATTATCCTA+TGG | 0.476856 | 1.4:+82838908 | MS.gene065692:CDS |
| GAAGGAGACAGAGGAGATGT+TGG | 0.486422 | 1.4:+82840762 | MS.gene065692:CDS |
| TACAATGATGTTTACACTGA+CGG | 0.486763 | 1.4:+82839284 | MS.gene065692:CDS |
| TTTCATTGCTCAAAATTGAT+GGG | 0.487627 | 1.4:+82840273 | MS.gene065692:CDS |
| CTCCATACACCTACACTCTC+AGG | 0.489319 | 1.4:+82838703 | MS.gene065692:CDS |
| TGTGAAAATACCAGAGGGAT+TGG | 0.495073 | 1.4:+82839926 | MS.gene065692:CDS |
| TTAGCTGCAAAAGACCCTTC+CGG | 0.497005 | 1.4:+82838672 | MS.gene065692:CDS |
| TTCAGCCCAAAATGTGAAAG+TGG | 0.506368 | 1.4:-82839999 | None:intergenic |
| AGAGGTGGAATATTGGGTCT+TGG | 0.506833 | 1.4:+82840035 | MS.gene065692:CDS |
| GTTGCACCATTGTTGTGTGC+AGG | 0.511420 | 1.4:+82839960 | MS.gene065692:CDS |
| CTTGGTGGAGTAGGACACAT+GGG | 0.512497 | 1.4:+82840053 | MS.gene065692:CDS |
| GGTGGAATATTGGGTCTTGG+TGG | 0.517471 | 1.4:+82840038 | MS.gene065692:CDS |
| CTGAAAACACCTGGGCTAAG+AGG | 0.518039 | 1.4:+82840017 | MS.gene065692:CDS |
| GTGGGAGTTGGTCTTCTCGT+TGG | 0.525528 | 1.4:+82839194 | MS.gene065692:CDS |
| GTTCAAAGTGGGAGAAATTG+TGG | 0.526442 | 1.4:+82839175 | MS.gene065692:CDS |
| GTGGGAGAAATTGTGGGAGT+TGG | 0.528018 | 1.4:+82839182 | MS.gene065692:CDS |
| GAAGAAGAAAGAGGCACTTG+AGG | 0.529985 | 1.4:+82840133 | MS.gene065692:CDS |
| TGTCAAAGGAAGTAAATTTG+AGG | 0.531733 | 1.4:+82840900 | MS.gene065692:CDS |
| GGTTGGTGAGGTACTAGAGG+TGG | 0.538320 | 1.4:+82839136 | MS.gene065692:CDS |
| GATGGGAAATTGATCTTGAT+GGG | 0.539815 | 1.4:+82840290 | MS.gene065692:CDS |
| GTTACACCTATGGTCATGCT+AGG | 0.542756 | 1.4:+82840338 | MS.gene065692:CDS |
| TTCAAAGTGGGAGAAATTGT+GGG | 0.545521 | 1.4:+82839176 | MS.gene065692:CDS |
| TTAACATACCCGGGAACCAT+AGG | 0.553152 | 1.4:-82838924 | None:intergenic |
| CCAATTATCCTATGGTTCCC+GGG | 0.558173 | 1.4:+82838916 | MS.gene065692:CDS |
| ATCATTGACACTGTTCCTGT+TGG | 0.558930 | 1.4:+82840230 | MS.gene065692:CDS |
| ATATTGGGTCTTGGTGGAGT+AGG | 0.559461 | 1.4:+82840044 | MS.gene065692:CDS |
| TTCTGATAAGAAGAAGAAAG+AGG | 0.560483 | 1.4:+82840124 | MS.gene065692:CDS |
| AGGTGGGTTCAAATGTTACA+AGG | 0.565769 | 1.4:+82839153 | MS.gene065692:CDS |
| GTTGGTGAGGTACTAGAGGT+GGG | 0.567462 | 1.4:+82839137 | MS.gene065692:CDS |
| AGGTTCGTTGTGGATGTCAA+AGG | 0.573106 | 1.4:+82840886 | MS.gene065692:CDS |
| TACATCAAAATTCATTACTG+TGG | 0.582501 | 1.4:+82838846 | MS.gene065692:CDS |
| TTGGTGGAGTAGGACACATG+GGG | 0.596788 | 1.4:+82840054 | MS.gene065692:CDS |
| AAATGTTACAAGGTTCAAAG+TGG | 0.597798 | 1.4:+82839163 | MS.gene065692:CDS |
| AATGTTACAAGGTTCAAAGT+GGG | 0.599126 | 1.4:+82839164 | MS.gene065692:CDS |
| TAGGTGTAACAAATTGAAGA+GGG | 0.600517 | 1.4:-82840325 | None:intergenic |
| ATAGGTGTAACAAATTGAAG+AGG | 0.601584 | 1.4:-82840326 | None:intergenic |
| AATATTCCACCTCTTAGCCC+AGG | 0.603820 | 1.4:-82840026 | None:intergenic |
| AAAACACCTGGGCTAAGAGG+TGG | 0.604672 | 1.4:+82840020 | MS.gene065692:CDS |
| AATGAAAGATAAGGCTCAAG+AGG | 0.608696 | 1.4:-82840257 | None:intergenic |
| ACCATGCAGAAACACAGGAC+CGG | 0.608947 | 1.4:+82838815 | MS.gene065692:intron |
| TCTTGGTGGAGTAGGACACA+TGG | 0.610428 | 1.4:+82840052 | MS.gene065692:CDS |
| TGTGAGGTATAGGTTCGTTG+TGG | 0.619087 | 1.4:+82840876 | MS.gene065692:CDS |
| GTTGCAGAAAGAACAACAGT+AGG | 0.620661 | 1.4:+82838648 | MS.gene065692:CDS |
| AAGCTTTGTTGGGAGCGTGA+AGG | 0.622128 | 1.4:+82840744 | MS.gene065692:CDS |
| TTTGTTGTGAAAATACCAGA+GGG | 0.624457 | 1.4:+82839921 | MS.gene065692:CDS |
| AGATAATCACCTGAGAGTGT+AGG | 0.625972 | 1.4:-82838712 | None:intergenic |
| CAGGCATGAAGTGGTTGGTG+AGG | 0.629500 | 1.4:+82839124 | MS.gene065692:intron |
| CACTGACGGAAAGATCACTC+AGG | 0.632595 | 1.4:+82839298 | MS.gene065692:CDS |
| GTCACACCTGCACACAACAA+TGG | 0.650120 | 1.4:-82839966 | None:intergenic |
| TGGGAGCGTGAAGGAGACAG+AGG | 0.652158 | 1.4:+82840753 | MS.gene065692:CDS |
| ATGAAAGATAAGGCTCAAGA+GGG | 0.658619 | 1.4:-82840256 | None:intergenic |
| GATTGGAGAAGAATGATGTG+AGG | 0.663743 | 1.4:+82840860 | MS.gene065692:CDS |
| GTTTGTTGTGAAAATACCAG+AGG | 0.664399 | 1.4:+82839920 | MS.gene065692:CDS |
| TTAAAACCATGCAGAAACAC+AGG | 0.668324 | 1.4:+82838810 | MS.gene065692:intron |
| AGTGGTTGGTGAGGTACTAG+AGG | 0.677629 | 1.4:+82839133 | MS.gene065692:CDS |
| ACTGACGGAAAGATCACTCA+GGG | 0.682017 | 1.4:+82839299 | MS.gene065692:CDS |
| TATGGAGTGAGAATTCCGGA+AGG | 0.698628 | 1.4:-82838687 | None:intergenic |
| ATGGAGTGAGAATTCCGGAA+GGG | 0.705897 | 1.4:-82838686 | None:intergenic |
| AAGAGCTTATCACAGTGACA+TGG | 0.707377 | 1.4:-82840103 | None:intergenic |
| AGGTGTAACAAATTGAAGAG+GGG | 0.708980 | 1.4:-82840324 | None:intergenic |
| GACGGAAAGATCACTCAGGG+TGG | 0.713421 | 1.4:+82839302 | MS.gene065692:CDS |
| TGGTGGAGTAGGACACATGG+GGG | 0.751756 | 1.4:+82840055 | MS.gene065692:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAGTAATTAATTTAGT+TGG | - | chr1.4:82839804-82839823 | None:intergenic | 10.0% |
| !! | TAAAAATTACTAACAAATTT+AGG | - | chr1.4:82840478-82840497 | None:intergenic | 10.0% |
| !! | TAAAAGTAATTAATTTAGTT+GGG | - | chr1.4:82839803-82839822 | None:intergenic | 10.0% |
| !!! | ATGTTATGAAAAATGTTTTA+TGG | + | chr1.4:82839623-82839642 | MS.gene065692:intron | 15.0% |
| !!! | CAATGTTTTCTTTTTTAAAT+GGG | - | chr1.4:82839457-82839476 | None:intergenic | 15.0% |
| !!! | CTTTTAAATAACTTGTAATT+AGG | + | chr1.4:82840528-82840547 | MS.gene065692:intron | 15.0% |
| !!! | TCAATGTTTTCTTTTTTAAA+TGG | - | chr1.4:82839458-82839477 | None:intergenic | 15.0% |
| !!! | TTATTTAAAAATCTAGTTCA+AGG | + | chr1.4:82840578-82840597 | MS.gene065692:intron | 15.0% |
| !!! | TTTAAGTTATTGAACAATTT+GGG | - | chr1.4:82840619-82840638 | None:intergenic | 15.0% |
| !! | AATTTAGATATGTTCAATTG+TGG | + | chr1.4:82839719-82839738 | MS.gene065692:intron | 20.0% |
| !! | ATCTATCAAATTATTATGTC+CGG | + | chr1.4:82839000-82839019 | MS.gene065692:intron | 20.0% |
| !! | TAAAAATCTTCAATAGTCAA+GGG | - | chr1.4:82840420-82840439 | None:intergenic | 20.0% |
| !! | TTAAAAATCTTCAATAGTCA+AGG | - | chr1.4:82840421-82840440 | None:intergenic | 20.0% |
| !! | TTAAGTTATTGAACAATTTG+GGG | - | chr1.4:82840618-82840637 | None:intergenic | 20.0% |
| !! | TTAGATGATATCATTACAAT+TGG | - | chr1.4:82840682-82840701 | None:intergenic | 20.0% |
| !! | TTTAAACTGATTATGTGTTT+GGG | + | chr1.4:82839883-82839902 | MS.gene065692:intron | 20.0% |
| !!! | ATTAATTACTTTTATGAACC+TGG | + | chr1.4:82839809-82839828 | MS.gene065692:intron | 20.0% |
| !!! | CTTTAAGTTATTGAACAATT+TGG | - | chr1.4:82840620-82840639 | None:intergenic | 20.0% |
| !!! | TATGATTGTTTTGAAAAAAC+AGG | + | chr1.4:82839105-82839124 | MS.gene065692:intron | 20.0% |
| !!! | TTTTAAACTGATTATGTGTT+TGG | + | chr1.4:82839882-82839901 | MS.gene065692:intron | 20.0% |
| !!! | TTTTAGCTTAGTTATTGAAT+AGG | + | chr1.4:82840393-82840412 | MS.gene065692:intron | 20.0% |
| ! | AGTTCACGGTAAAAAAAATA+TGG | - | chr1.4:82839766-82839785 | None:intergenic | 25.0% |
| ! | CATAGTTACAATTTCAATCA+TGG | - | chr1.4:82840815-82840834 | None:intergenic | 25.0% |
| ! | CATGATTGAAATTGTAACTA+TGG | + | chr1.4:82840813-82840832 | MS.gene065692:CDS | 25.0% |
| ! | CCTTAAAATTAATCGAAACA+CGG | - | chr1.4:82839042-82839061 | None:intergenic | 25.0% |
| ! | GTAATTAGGTCTTGAATTTA+GGG | + | chr1.4:82840542-82840561 | MS.gene065692:intron | 25.0% |
| ! | TACATCAAAATTCATTACTG+TGG | + | chr1.4:82838846-82838865 | MS.gene065692:CDS | 25.0% |
| ! | TGTAATTAGGTCTTGAATTT+AGG | + | chr1.4:82840541-82840560 | MS.gene065692:intron | 25.0% |
| ! | TTAAACTGATTATGTGTTTG+GGG | + | chr1.4:82839884-82839903 | MS.gene065692:intron | 25.0% |
| ! | TTTCATTGCTCAAAATTGAT+GGG | + | chr1.4:82840273-82840292 | MS.gene065692:CDS | 25.0% |
| !! | ATTTTGAGCAATGAAAGATA+AGG | - | chr1.4:82840269-82840288 | None:intergenic | 25.0% |
| !! | TACACAGTTAATTTAGTTCA+CGG | - | chr1.4:82839780-82839799 | None:intergenic | 25.0% |
| !!! | ATTTTGATGTAAACATCATC+CGG | - | chr1.4:82838837-82838856 | None:intergenic | 25.0% |
| !!! | TAACAAAGCTTTTGAAAGAT+TGG | + | chr1.4:82840843-82840862 | MS.gene065692:CDS | 25.0% |
| !!! | TTATTACTTTTGTTCAACGA+CGG | - | chr1.4:82839342-82839361 | None:intergenic | 25.0% |
| AAATGTTACAAGGTTCAAAG+TGG | + | chr1.4:82839163-82839182 | MS.gene065692:CDS | 30.0% | |
| AATACTGTAACAAGAAGATC+TGG | + | chr1.4:82839258-82839277 | MS.gene065692:CDS | 30.0% | |
| AATGTTACAAGGTTCAAAGT+GGG | + | chr1.4:82839164-82839183 | MS.gene065692:CDS | 30.0% | |
| AGTTAAGAAGTTAACATACC+CGG | - | chr1.4:82838937-82838956 | None:intergenic | 30.0% | |
| ATAGGTGTAACAAATTGAAG+AGG | - | chr1.4:82840329-82840348 | None:intergenic | 30.0% | |
| ATCATTGATGAGAAAGAAGA+AGG | - | chr1.4:82840373-82840392 | None:intergenic | 30.0% | |
| CAAGTTTGTATGTGATTAAC+AGG | - | chr1.4:82839668-82839687 | None:intergenic | 30.0% | |
| CACCAAATCAAAAATGATCT+TGG | + | chr1.4:82838888-82838907 | MS.gene065692:CDS | 30.0% | |
| CTTTCATTGCTCAAAATTGA+TGG | + | chr1.4:82840272-82840291 | MS.gene065692:CDS | 30.0% | |
| TAACAGGTGTGAAAAAGATT+GGG | - | chr1.4:82839652-82839671 | None:intergenic | 30.0% | |
| TACAATGATGTTTACACTGA+CGG | + | chr1.4:82839284-82839303 | MS.gene065692:CDS | 30.0% | |
| TAGGTGTAACAAATTGAAGA+GGG | - | chr1.4:82840328-82840347 | None:intergenic | 30.0% | |
| TGTCAAAGGAAGTAAATTTG+AGG | + | chr1.4:82840900-82840919 | MS.gene065692:CDS | 30.0% | |
| TTAACAGGTGTGAAAAAGAT+TGG | - | chr1.4:82839653-82839672 | None:intergenic | 30.0% | |
| TTCTGATAAGAAGAAGAAAG+AGG | + | chr1.4:82840124-82840143 | MS.gene065692:CDS | 30.0% | |
| ! | CCGTGTTTCGATTAATTTTA+AGG | + | chr1.4:82839039-82839058 | MS.gene065692:intron | 30.0% |
| ! | TTTGTTGTGAAAATACCAGA+GGG | + | chr1.4:82839921-82839940 | MS.gene065692:CDS | 30.0% |
| ! | TTTTATGAACCTGGTGTAAA+AGG | + | chr1.4:82839818-82839837 | MS.gene065692:intron | 30.0% |
| !! | GTGTGGAATTTAATTTGACA+CGG | - | chr1.4:82839413-82839432 | None:intergenic | 30.0% |
| !! | TCTTCAATTTGTTACACCTA+TGG | + | chr1.4:82840328-82840347 | MS.gene065692:CDS | 30.0% |
| !! | TGCCAAGATCATTTTTGATT+TGG | - | chr1.4:82838893-82838912 | None:intergenic | 30.0% |
| AATGAAAGATAAGGCTCAAG+AGG | - | chr1.4:82840260-82840279 | None:intergenic | 35.0% | |
| AGAAGAATGATGTGAGGTAT+AGG | + | chr1.4:82840866-82840885 | MS.gene065692:CDS | 35.0% | |
| AGGTGTAACAAATTGAAGAG+GGG | - | chr1.4:82840327-82840346 | None:intergenic | 35.0% | |
| ATGAAAGATAAGGCTCAAGA+GGG | - | chr1.4:82840259-82840278 | None:intergenic | 35.0% | |
| ATTGATGAGAAAGAAGAAGG+TGG | - | chr1.4:82840370-82840389 | None:intergenic | 35.0% | |
| GATGGGAAATTGATCTTGAT+GGG | + | chr1.4:82840290-82840309 | MS.gene065692:CDS | 35.0% | |
| GTTAAGAAGTTAACATACCC+GGG | - | chr1.4:82838936-82838955 | None:intergenic | 35.0% | |
| TATTGATGTTGTGTTGCGTA+GGG | + | chr1.4:82840704-82840723 | MS.gene065692:intron | 35.0% | |
| TCAGAAATGCATAAAACGTG+TGG | - | chr1.4:82839430-82839449 | None:intergenic | 35.0% | |
| TGATGGGAAATTGATCTTGA+TGG | + | chr1.4:82840289-82840308 | MS.gene065692:CDS | 35.0% | |
| TTAAAACCATGCAGAAACAC+AGG | + | chr1.4:82838810-82838829 | MS.gene065692:intron | 35.0% | |
| TTATTATGTCCGGTGTTTGT+TGG | + | chr1.4:82839010-82839029 | MS.gene065692:intron | 35.0% | |
| TTCAAAGTGGGAGAAATTGT+GGG | + | chr1.4:82839176-82839195 | MS.gene065692:CDS | 35.0% | |
| TTGAAAAAACAGGCATGAAG+TGG | + | chr1.4:82839115-82839134 | MS.gene065692:intron | 35.0% | |
| TTGATGAGAAAGAAGAAGGT+GGG | - | chr1.4:82840369-82840388 | None:intergenic | 35.0% | |
| TTGTTAGCTCAGATACTGTT+GGG | + | chr1.4:82840177-82840196 | MS.gene065692:CDS | 35.0% | |
| ! | ACAGTCCACTTTCACATTTT+GGG | + | chr1.4:82839994-82840013 | MS.gene065692:CDS | 35.0% |
| ! | TACAGTCCACTTTCACATTT+TGG | + | chr1.4:82839993-82840012 | MS.gene065692:CDS | 35.0% |
| ! | TCAATTACTGGAAGCTTTGT+TGG | + | chr1.4:82840733-82840752 | MS.gene065692:CDS | 35.0% |
| ! | TTTCTAACACCTTTTACACC+AGG | - | chr1.4:82839830-82839849 | None:intergenic | 35.0% |
| !! | CAATTACTGGAAGCTTTGTT+GGG | + | chr1.4:82840734-82840753 | MS.gene065692:CDS | 35.0% |
| !! | GTTTGTTGTGAAAATACCAG+AGG | + | chr1.4:82839920-82839939 | MS.gene065692:CDS | 35.0% |
| !!! | TTGGAGTTTTGGAAAGAGAA+GGG | + | chr1.4:82840781-82840800 | MS.gene065692:CDS | 35.0% |
| AAAAACAGGCATGAAGTGGT+TGG | + | chr1.4:82839119-82839138 | MS.gene065692:intron | 40.0% | |
| AAGAGCTTATCACAGTGACA+TGG | - | chr1.4:82840106-82840125 | None:intergenic | 40.0% | |
| ATCATTGACACTGTTCCTGT+TGG | + | chr1.4:82840230-82840249 | MS.gene065692:CDS | 40.0% | |
| CAGACACATCTTCGATTGAT+CGG | - | chr1.4:82838960-82838979 | None:intergenic | 40.0% | |
| CTATTGATGTTGTGTTGCGT+AGG | + | chr1.4:82840703-82840722 | MS.gene065692:intron | 40.0% | |
| CTTGTTAGCTCAGATACTGT+TGG | + | chr1.4:82840176-82840195 | MS.gene065692:CDS | 40.0% | |
| GATTGGAGAAGAATGATGTG+AGG | + | chr1.4:82840860-82840879 | MS.gene065692:CDS | 40.0% | |
| GTTCAAAGTGGGAGAAATTG+TGG | + | chr1.4:82839175-82839194 | MS.gene065692:CDS | 40.0% | |
| GTTGCAGAAAGAACAACAGT+AGG | + | chr1.4:82838648-82838667 | MS.gene065692:CDS | 40.0% | |
| TCCAATTATCCTATGGTTCC+CGG | + | chr1.4:82838915-82838934 | MS.gene065692:CDS | 40.0% | |
| TGGCATGTCCAATTATCCTA+TGG | + | chr1.4:82838908-82838927 | MS.gene065692:CDS | 40.0% | |
| TGTGAAAATACCAGAGGGAT+TGG | + | chr1.4:82839926-82839945 | MS.gene065692:CDS | 40.0% | |
| TGTTTGGGGATATTACTGTC+AGG | + | chr1.4:82839898-82839917 | MS.gene065692:intron | 40.0% | |
| TTCAGCCCAAAATGTGAAAG+TGG | - | chr1.4:82840002-82840021 | None:intergenic | 40.0% | |
| ! | AGATAATCACCTGAGAGTGT+AGG | - | chr1.4:82838715-82838734 | None:intergenic | 40.0% |
| ! | AGGTGGGTTCAAATGTTACA+AGG | + | chr1.4:82839153-82839172 | MS.gene065692:CDS | 40.0% |
| ! | ATTTTGGGCTGAAAACACCT+GGG | + | chr1.4:82840009-82840028 | MS.gene065692:CDS | 40.0% |
| ! | GTTTTACCTAGCATGACCAT+AGG | - | chr1.4:82840347-82840366 | None:intergenic | 40.0% |
| !! | GTGAAAGTAGCAAAGGCATT+AGG | + | chr1.4:82840077-82840096 | MS.gene065692:CDS | 40.0% |
| !! | TTACTTTTGTTCAACGACGG+TGG | - | chr1.4:82839339-82839358 | None:intergenic | 40.0% |
| !!! | GTTGGAGTTTTGGAAAGAGA+AGG | + | chr1.4:82840780-82840799 | MS.gene065692:CDS | 40.0% |
| AATATTCCACCTCTTAGCCC+AGG | - | chr1.4:82840029-82840048 | None:intergenic | 45.0% | |
| ACTGACGGAAAGATCACTCA+GGG | + | chr1.4:82839299-82839318 | MS.gene065692:CDS | 45.0% | |
| AGAGGTGGAATATTGGGTCT+TGG | + | chr1.4:82840035-82840054 | MS.gene065692:CDS | 45.0% | |
| AGGTTCGTTGTGGATGTCAA+AGG | + | chr1.4:82840886-82840905 | MS.gene065692:CDS | 45.0% | |
| ATATTGGGTCTTGGTGGAGT+AGG | + | chr1.4:82840044-82840063 | MS.gene065692:CDS | 45.0% | |
| ATGGAGTGAGAATTCCGGAA+GGG | - | chr1.4:82838689-82838708 | None:intergenic | 45.0% | |
| CCAATTATCCTATGGTTCCC+GGG | + | chr1.4:82838916-82838935 | MS.gene065692:CDS | 45.0% | |
| CGATCAATCGAAGATGTGTC+TGG | + | chr1.4:82838958-82838977 | MS.gene065692:intron | 45.0% | |
| CGGACATATCCAACAAACAC+CGG | - | chr1.4:82839022-82839041 | None:intergenic | 45.0% | |
| GGGCTAAGAGGTGGAATATT+GGG | + | chr1.4:82840029-82840048 | MS.gene065692:CDS | 45.0% | |
| GGTGTATGGAGTGAGAATTC+CGG | - | chr1.4:82838694-82838713 | None:intergenic | 45.0% | |
| GTAGGGAGGAAGTCAATTAC+TGG | + | chr1.4:82840721-82840740 | MS.gene065692:intron | 45.0% | |
| GTTACACCTATGGTCATGCT+AGG | + | chr1.4:82840338-82840357 | MS.gene065692:CDS | 45.0% | |
| TATGGAGTGAGAATTCCGGA+AGG | - | chr1.4:82838690-82838709 | None:intergenic | 45.0% | |
| TGGGCTAAGAGGTGGAATAT+TGG | + | chr1.4:82840028-82840047 | MS.gene065692:CDS | 45.0% | |
| TGTGAGGTATAGGTTCGTTG+TGG | + | chr1.4:82840876-82840895 | MS.gene065692:CDS | 45.0% | |
| TTAACATACCCGGGAACCAT+AGG | - | chr1.4:82838927-82838946 | None:intergenic | 45.0% | |
| TTAGCTGCAAAAGACCCTTC+CGG | + | chr1.4:82838672-82838691 | MS.gene065692:CDS | 45.0% | |
| ! | AACAATGGTGCAACTTGCTC+TGG | - | chr1.4:82839954-82839973 | None:intergenic | 45.0% |
| ! | CAGAGGAGATGTTGGAGTTT+TGG | + | chr1.4:82840770-82840789 | MS.gene065692:CDS | 45.0% |
| ! | CATTTTGGGCTGAAAACACC+TGG | + | chr1.4:82840008-82840027 | MS.gene065692:CDS | 45.0% |
| !! | AAAGAGGCACTTGAGGATCT+TGG | + | chr1.4:82840140-82840159 | MS.gene065692:CDS | 45.0% |
| !! | GAAGAAGAAAGAGGCACTTG+AGG | + | chr1.4:82840133-82840152 | MS.gene065692:CDS | 45.0% |
| !!! | AAACTTTTTTTTTTTTAATT+TGG | + | chr1.4:82840497-82840516 | MS.gene065692:intron | 5.0% |
| !!! | TTTTTAAATAATTTATGTTT+AGG | - | chr1.4:82840569-82840588 | None:intergenic | 5.0% |
| AAAACACCTGGGCTAAGAGG+TGG | + | chr1.4:82840020-82840039 | MS.gene065692:CDS | 50.0% | |
| ACCATGCAGAAACACAGGAC+CGG | + | chr1.4:82838815-82838834 | MS.gene065692:intron | 50.0% | |
| CACTGACGGAAAGATCACTC+AGG | + | chr1.4:82839298-82839317 | MS.gene065692:CDS | 50.0% | |
| CATGGGGGTGAAAGTAGCAA+AGG | + | chr1.4:82840070-82840089 | MS.gene065692:CDS | 50.0% | |
| CCCGGGAACCATAGGATAAT+TGG | - | chr1.4:82838919-82838938 | None:intergenic | 50.0% | |
| CTCCATACACCTACACTCTC+AGG | + | chr1.4:82838703-82838722 | MS.gene065692:CDS | 50.0% | |
| CTGAAAACACCTGGGCTAAG+AGG | + | chr1.4:82840017-82840036 | MS.gene065692:CDS | 50.0% | |
| CTTGGTGGAGTAGGACACAT+GGG | + | chr1.4:82840053-82840072 | MS.gene065692:CDS | 50.0% | |
| GAAGGAGACAGAGGAGATGT+TGG | + | chr1.4:82840762-82840781 | MS.gene065692:CDS | 50.0% | |
| GGTGGAATATTGGGTCTTGG+TGG | + | chr1.4:82840038-82840057 | MS.gene065692:CDS | 50.0% | |
| GTCACACCTGCACACAACAA+TGG | - | chr1.4:82839969-82839988 | None:intergenic | 50.0% | |
| GTGGGAGAAATTGTGGGAGT+TGG | + | chr1.4:82839182-82839201 | MS.gene065692:CDS | 50.0% | |
| GTTGCACCATTGTTGTGTGC+AGG | + | chr1.4:82839960-82839979 | MS.gene065692:CDS | 50.0% | |
| TCTTGGTGGAGTAGGACACA+TGG | + | chr1.4:82840052-82840071 | MS.gene065692:CDS | 50.0% | |
| TGATGTTGTGTTGCGTAGGG+AGG | + | chr1.4:82840707-82840726 | MS.gene065692:intron | 50.0% | |
| TTGGTGGAGTAGGACACATG+GGG | + | chr1.4:82840054-82840073 | MS.gene065692:CDS | 50.0% | |
| ! | CACCTGAGAGTGTAGGTGTA+TGG | - | chr1.4:82838708-82838727 | None:intergenic | 50.0% |
| ! | GTTGGTGAGGTACTAGAGGT+GGG | + | chr1.4:82839137-82839156 | MS.gene065692:CDS | 50.0% |
| !! | AAGCTTTGTTGGGAGCGTGA+AGG | + | chr1.4:82840744-82840763 | MS.gene065692:CDS | 50.0% |
| !! | AGTGGTTGGTGAGGTACTAG+AGG | + | chr1.4:82839133-82839152 | MS.gene065692:CDS | 50.0% |
| GACGGAAAGATCACTCAGGG+TGG | + | chr1.4:82839302-82839321 | MS.gene065692:CDS | 55.0% | |
| TGGTGGAGTAGGACACATGG+GGG | + | chr1.4:82840055-82840074 | MS.gene065692:CDS | 55.0% | |
| ! | CAGGCATGAAGTGGTTGGTG+AGG | + | chr1.4:82839124-82839143 | MS.gene065692:intron | 55.0% |
| ! | TCCGGTCCTGTGTTTCTGCA+TGG | - | chr1.4:82838819-82838838 | None:intergenic | 55.0% |
| !! | GGTTGGTGAGGTACTAGAGG+TGG | + | chr1.4:82839136-82839155 | MS.gene065692:CDS | 55.0% |
| !! | GTGGGAGTTGGTCTTCTCGT+TGG | + | chr1.4:82839194-82839213 | MS.gene065692:CDS | 55.0% |
| GGCTCAAGAGGGTGACCAAC+AGG | - | chr1.4:82840248-82840267 | None:intergenic | 60.0% | |
| ! | TGCTCTGGTGCCAATCCCTC+TGG | - | chr1.4:82839939-82839958 | None:intergenic | 60.0% |
| ! | TGGGAGCGTGAAGGAGACAG+AGG | + | chr1.4:82840753-82840772 | MS.gene065692:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 82838633 | 82840927 | 82838633 | ID=MS.gene065692 |
| chr1.4 | mRNA | 82838633 | 82840927 | 82838633 | ID=MS.gene065692.t1;Parent=MS.gene065692 |
| chr1.4 | exon | 82838633 | 82838724 | 82838633 | ID=MS.gene065692.t1.exon1;Parent=MS.gene065692.t1 |
| chr1.4 | CDS | 82838633 | 82838724 | 82838633 | ID=cds.MS.gene065692.t1;Parent=MS.gene065692.t1 |
| chr1.4 | exon | 82838824 | 82838937 | 82838824 | ID=MS.gene065692.t1.exon2;Parent=MS.gene065692.t1 |
| chr1.4 | CDS | 82838824 | 82838937 | 82838824 | ID=cds.MS.gene065692.t1;Parent=MS.gene065692.t1 |
| chr1.4 | exon | 82839127 | 82839354 | 82839127 | ID=MS.gene065692.t1.exon3;Parent=MS.gene065692.t1 |
| chr1.4 | CDS | 82839127 | 82839354 | 82839127 | ID=cds.MS.gene065692.t1;Parent=MS.gene065692.t1 |
| chr1.4 | exon | 82839920 | 82840359 | 82839920 | ID=MS.gene065692.t1.exon4;Parent=MS.gene065692.t1 |
| chr1.4 | CDS | 82839920 | 82840359 | 82839920 | ID=cds.MS.gene065692.t1;Parent=MS.gene065692.t1 |
| chr1.4 | exon | 82840725 | 82840927 | 82840725 | ID=MS.gene065692.t1.exon5;Parent=MS.gene065692.t1 |
| chr1.4 | CDS | 82840725 | 82840927 | 82840725 | ID=cds.MS.gene065692.t1;Parent=MS.gene065692.t1 |
| Gene Sequence |
| Protein sequence |
