AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene070872

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070872.t1 MTR_5g031250 94.595 296 16 0 1 296 1 296 0.0 551
MS.gene070872.t1 MTR_5g031230 83.108 296 50 0 1 296 1 296 2.96e-178 499
MS.gene070872.t1 MTR_4g115300 80.743 296 57 0 1 296 1 296 8.56e-173 485
MS.gene070872.t1 MTR_5g031390 80.068 296 59 0 1 296 1 296 8.96e-171 479
MS.gene070872.t1 MTR_5g031310 79.125 297 61 1 1 296 1 297 2.17e-169 476
MS.gene070872.t1 MTR_5g031210 79.730 296 60 0 1 296 1 296 1.22e-166 469
MS.gene070872.t1 MTR_5g031300 78.451 297 63 1 1 296 1 297 9.45e-166 467
MS.gene070872.t1 MTR_5g031305 78.451 297 63 1 1 296 1 297 1.07e-165 467
MS.gene070872.t1 MTR_8g068190 76.689 296 69 0 1 296 1 296 7.97e-164 462
MS.gene070872.t1 MTR_5g031180 77.365 296 67 0 1 296 1 296 4.65e-163 460
MS.gene070872.t1 MTR_5g031250 95.851 241 10 0 1 241 1 241 1.80e-162 455
MS.gene070872.t1 MTR_5g031360 77.352 287 65 0 10 296 12 298 1.95e-161 456
MS.gene070872.t1 MTR_5g031190 73.311 296 79 0 1 296 1 296 6.10e-159 450
MS.gene070872.t1 MTR_8g092630 61.565 294 112 1 3 296 60 352 1.28e-118 349
MS.gene070872.t1 MTR_5g031430 59.717 283 114 0 14 296 14 296 1.89e-114 337
MS.gene070872.t1 MTR_1g025950 57.586 290 122 1 8 296 7 296 7.87e-114 335
MS.gene070872.t1 MTR_1g107425 55.197 279 124 1 15 293 13 290 1.64e-100 299
MS.gene070872.t1 MTR_1g107425 54.007 287 131 1 15 301 13 298 4.14e-100 300
MS.gene070872.t1 MTR_2g009810 53.358 268 124 1 14 280 62 329 3.50e-89 274
MS.gene070872.t1 MTR_2g009820 52.410 166 78 1 116 280 8 173 2.57e-43 150
MS.gene070872.t1 MTR_5g031290 85.000 80 11 1 1 79 1 80 6.97e-43 147
MS.gene070872.t1 MTR_5g031290 72.000 50 14 0 247 296 80 129 4.87e-17 79.0
MS.gene070872.t1 MTR_8g095220 27.575 301 179 9 7 281 59 346 1.80e-22 98.2
MS.gene070872.t1 MTR_8g095220 27.237 257 153 7 7 242 59 302 1.37e-20 91.3
MS.gene070872.t1 MTR_6g466320 25.828 302 200 8 1 290 6 295 3.35e-20 90.9
MS.gene070872.t1 MTR_6g465010 25.828 302 200 8 1 290 6 295 3.35e-20 90.9
MS.gene070872.t1 MTR_6g465010 26.259 278 182 7 25 290 13 279 2.04e-19 88.6
MS.gene070872.t1 MTR_0001s0660 24.074 216 149 3 38 240 35 248 1.67e-14 74.7
MS.gene070872.t1 MTR_5g031380 66.667 39 13 0 80 118 19 57 6.66e-13 65.1
MS.gene070872.t1 MTR_7g068320 27.562 283 167 8 39 286 48 327 4.80e-12 67.0
MS.gene070872.t1 MTR_3g089940 22.105 285 199 6 39 301 37 320 1.14e-11 65.5
MS.gene070872.t1 MTR_3g089940 22.105 285 199 6 39 301 37 320 1.17e-11 65.5
MS.gene070872.t1 MTR_3g089940 22.105 285 199 6 39 301 37 320 1.61e-11 65.5
MS.gene070872.t1 MTR_3g089940 22.105 285 199 6 39 301 37 320 1.65e-11 65.5
MS.gene070872.t1 MTR_3g089977 21.754 285 200 6 39 301 37 320 2.40e-11 64.7
MS.gene070872.t1 MTR_5g045710 23.445 209 145 3 38 233 35 241 3.60e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070872.t1 AT4G37990 72.727 286 78 0 11 296 7 292 4.99e-138 397
MS.gene070872.t1 AT4G39330 60.473 296 117 0 1 296 1 296 3.30e-132 380
MS.gene070872.t1 AT4G39330 60.473 296 117 0 1 296 1 296 1.21e-131 380
MS.gene070872.t1 AT4G37980 67.483 286 93 0 11 296 7 292 7.79e-129 373
MS.gene070872.t1 AT4G37970 62.199 291 110 0 6 296 7 297 2.47e-128 372
MS.gene070872.t1 AT4G37980 67.730 282 91 0 11 292 7 288 8.95e-128 368
MS.gene070872.t1 AT4G37970 62.153 288 109 0 6 293 7 294 8.58e-127 366
MS.gene070872.t1 AT2G21890 60.976 287 111 1 11 296 5 291 1.08e-124 363
MS.gene070872.t1 AT2G21730 61.111 288 110 2 11 296 5 292 4.80e-124 362
MS.gene070872.t1 AT4G37970 62.917 240 89 0 6 245 7 246 1.95e-104 307
MS.gene070872.t1 AT4G37970 63.291 237 87 0 6 242 7 243 1.64e-103 305
MS.gene070872.t1 AT3G19450 54.196 286 131 0 11 296 9 294 1.38e-91 278
MS.gene070872.t1 AT1G72680 50.741 270 133 0 11 280 9 278 1.70e-87 268
MS.gene070872.t1 AT4G34230 53.448 290 135 0 7 296 4 293 2.08e-84 260
MS.gene070872.t1 AT4G34230 54.007 287 131 1 7 293 4 289 3.77e-84 259
MS.gene070872.t1 AT5G63620 26.578 301 182 10 7 281 61 348 4.63e-23 99.8
MS.gene070872.t1 AT5G63620 26.578 301 182 10 7 281 61 348 5.52e-23 99.8
MS.gene070872.t1 AT5G63620 26.459 257 155 8 7 242 61 304 8.38e-21 92.0
MS.gene070872.t1 AT5G51970 26.374 273 180 6 30 290 34 297 1.05e-19 89.4
MS.gene070872.t1 AT5G51970 26.374 273 180 6 30 290 34 297 1.05e-19 89.4
MS.gene070872.t1 AT5G43940 27.155 232 151 6 39 253 48 278 1.73e-14 74.3
MS.gene070872.t1 AT5G43940 27.155 232 151 6 39 253 36 266 1.90e-14 74.3
MS.gene070872.t1 AT1G22430 28.000 200 125 6 39 221 42 239 2.09e-14 73.6
MS.gene070872.t1 AT1G22430 28.000 200 125 6 39 221 42 239 2.35e-14 73.2
MS.gene070872.t1 AT1G22430 28.000 200 125 6 39 221 42 239 2.35e-14 73.2
MS.gene070872.t1 AT1G22430 28.000 200 125 6 39 221 42 239 4.24e-14 73.2
MS.gene070872.t1 AT1G22430 28.000 200 125 6 39 221 42 239 4.24e-14 73.2
MS.gene070872.t1 AT1G64710 28.000 200 124 5 39 219 13 211 3.00e-13 70.5
MS.gene070872.t1 AT1G64710 28.000 200 124 5 39 219 36 234 3.34e-13 70.5
MS.gene070872.t1 AT1G22440 28.000 175 108 4 39 196 40 213 6.27e-13 69.7

Find 93 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAGTCCTCTTCGATATTT+TGG 0.153434 5.4:+21396334 MS.gene070872:CDS
CCCTCACATTCCTTTAATAA+TGG 0.196862 5.4:+21396763 MS.gene070872:CDS
TATTGCTTCTTTCTCTTTGT+TGG 0.221564 5.4:-21396470 None:intergenic
CAAAACTTACCCATTATTAA+AGG 0.229298 5.4:-21396773 None:intergenic
GAAGCTGAAGCAAGGAAAAT+TGG 0.253795 5.4:-21400195 None:intergenic
TTTCTTGGTCATGACTTATA+AGG 0.254311 5.4:-21396516 None:intergenic
TTGTTTGGATGTTCAAATTC+AGG 0.286140 5.4:-21395599 None:intergenic
CTATATGTTAGTGTTTGTTT+AGG 0.292071 5.4:-21396172 None:intergenic
AACGAAGAAGCTTGCGGATT+CGG 0.292789 5.4:-21400098 None:intergenic
CCCCTTTCAACTTCTTTAGA+AGG 0.300039 5.4:+21395663 MS.gene070872:CDS
CCTCACATTCCTTTAATAAT+GGG 0.310674 5.4:+21396764 MS.gene070872:CDS
CGCAAGCTTCTTCGTTGGTC+TGG 0.327239 5.4:+21400105 MS.gene070872:CDS
TATATGTTAGTGTTTGTTTA+GGG 0.329059 5.4:-21396171 None:intergenic
TCTTGGTGGACTTGGTCACT+TGG 0.333930 5.4:+21396393 MS.gene070872:CDS
ATTGCTTCTTTCTCTTTGTT+GGG 0.338643 5.4:-21396469 None:intergenic
GATGGCTCCATCACTGTATT+TGG 0.340003 5.4:-21396197 None:intergenic
GTGAAGTTTGCAAAAGCTTT+TGG 0.362966 5.4:+21396418 MS.gene070872:CDS
GAACATCCAAACAAGGCATT+TGG 0.366986 5.4:+21395608 MS.gene070872:CDS
GCCCAACCAAATGCCTTGTT+TGG 0.380671 5.4:-21395614 None:intergenic
TCTACCTATCCACTAGTTCC+TGG 0.381163 5.4:+21395917 MS.gene070872:CDS
TTCATTTCATAAAGAATGAA+TGG 0.382645 5.4:+21395888 MS.gene070872:CDS
ATAGGTATTGTTGGTCTTGG+TGG 0.404910 5.4:+21396379 MS.gene070872:CDS
ATTGTTGGTCTTGGTGGACT+TGG 0.407291 5.4:+21396385 MS.gene070872:CDS
CATACTCTCTTACCTCTAGT+TGG 0.411780 5.4:+21396680 MS.gene070872:CDS
CATTTAAAGTACTGTATTGT+GGG 0.422630 5.4:+21395849 MS.gene070872:CDS
GTCATGATCTTTCAGAGAAA+CGG 0.436540 5.4:+21395811 MS.gene070872:intron
GATTATAGGCATGAGATTGC+TGG 0.439750 5.4:+21396025 MS.gene070872:intron
TCATTTCATAAAGAATGAAT+GGG 0.446360 5.4:+21395889 MS.gene070872:CDS
TGGGCAGCTAGAGACACTTC+TGG 0.452902 5.4:+21395632 MS.gene070872:CDS
TCCAAACAAGGCATTTGGTT+GGG 0.457023 5.4:+21395613 MS.gene070872:CDS
AATATAGGTATTGTTGGTCT+TGG 0.457645 5.4:+21396376 MS.gene070872:CDS
AGTGATGGAGCCATCACATA+TGG 0.457685 5.4:+21396205 MS.gene070872:CDS
TCATGATCTTTCAGAGAAAC+GGG 0.459388 5.4:+21395812 MS.gene070872:intron
GCTTCAAGTGGTAAGCCATC+AGG 0.468059 5.4:-21396277 None:intergenic
GGTATGAATATAGGTATTGT+TGG 0.472768 5.4:+21396370 MS.gene070872:CDS
ATAGGCTGCGACGGGTACTT+TGG 0.474520 5.4:+21396628 MS.gene070872:intron
AACCTTCTAAAGAAGTTGAA+AGG 0.478601 5.4:-21395665 None:intergenic
AAAGTAGAGAAGTTCAAAGT+TGG 0.481176 5.4:+21396070 MS.gene070872:CDS
ACCTTCTAAAGAAGTTGAAA+GGG 0.483702 5.4:-21395664 None:intergenic
GACAAGCCTGGTATGAATAT+AGG 0.491634 5.4:+21396361 MS.gene070872:CDS
ATGATACCTTAGAAAGAAAA+CGG 0.494467 5.4:+21400036 MS.gene070872:intron
GCATTTAAAGTACTGTATTG+TGG 0.497678 5.4:+21395848 MS.gene070872:CDS
CTTGGTGGACTTGGTCACTT+GGG 0.501069 5.4:+21396394 MS.gene070872:CDS
GCTGCTCCTCTCCTCTGTGC+TGG 0.501712 5.4:+21396301 MS.gene070872:CDS
AGCTTCAAATCTGTTGTGTG+AGG 0.507358 5.4:+21400212 MS.gene070872:CDS
TTTGTAGTTCGCATTCCTGA+TGG 0.514382 5.4:+21396262 MS.gene070872:CDS
TAAGGAATGAATCAGCTCCT+AGG 0.516958 5.4:-21396498 None:intergenic
AGTTGGAGACAAAGTGGGTG+TGG 0.517700 5.4:+21396087 MS.gene070872:CDS
GAATCCGCAAGCTTCTTCGT+TGG 0.523184 5.4:+21400100 MS.gene070872:CDS
ATCCAAACAAGGCATTTGGT+TGG 0.528014 5.4:+21395612 MS.gene070872:CDS
TGGAGGGTACTCTGACTCAA+TGG 0.539173 5.4:+21396225 MS.gene070872:CDS
CCCATTATTAAAGGAATGTG+AGG 0.542582 5.4:-21396764 None:intergenic
GGAATGTGAGGGAGCTCCAT+GGG 0.556918 5.4:-21396752 None:intergenic
GAAAGAAAACGGCGAGACGA+GGG 0.557340 5.4:+21400047 MS.gene070872:intron
AGAAAGAAAACGGCGAGACG+AGG 0.561129 5.4:+21400046 MS.gene070872:intron
GTTGGATTATTAAAGTATCA+CGG 0.561385 5.4:+21396698 MS.gene070872:CDS
GTATCACGGAAAACTTGTAA+TGG 0.562070 5.4:+21396712 MS.gene070872:CDS
CTACCTATCCACTAGTTCCT+GGG 0.565757 5.4:+21395918 MS.gene070872:CDS
GCTGCGACGGGTACTTTGGA+TGG 0.569334 5.4:+21396632 MS.gene070872:CDS
CATACGTACCCAGGAACTAG+TGG 0.581134 5.4:-21395926 None:intergenic
GGGAGCTCCATGGGATTCTG+AGG 0.582826 5.4:-21396743 None:intergenic
CACGGAAAACTTGTAATGGT+CGG 0.587505 5.4:+21396716 MS.gene070872:CDS
TCATGACCAAGAAAAGATGC+AGG 0.593149 5.4:+21396525 MS.gene070872:CDS
CGGTGCACCTCAGAATCCCA+TGG 0.597537 5.4:+21396736 MS.gene070872:CDS
AGGAATGTGAGGGAGCTCCA+TGG 0.601139 5.4:-21396753 None:intergenic
GATGGAGCCATCACATATGG+AGG 0.606444 5.4:+21396208 MS.gene070872:CDS
AGAGTACCCTCCATATGTGA+TGG 0.609637 5.4:-21396215 None:intergenic
ACAGATTTGAAGCTGAAGCA+AGG 0.610622 5.4:-21400203 None:intergenic
TATAGTGCCAAATACAGTGA+TGG 0.611970 5.4:+21396190 MS.gene070872:CDS
GTTCAAAGTTGGAGACAAAG+TGG 0.616401 5.4:+21396081 MS.gene070872:CDS
GCTGGTATAGTGACAGAGGT+GGG 0.618352 5.4:+21396043 MS.gene070872:CDS
GTAATACCAGCACAGAGGAG+AGG 0.625585 5.4:-21396307 None:intergenic
TGCTGGTATAGTGACAGAGG+TGG 0.631503 5.4:+21396042 MS.gene070872:CDS
CATCATCGATACAGTTTCAG+CGG 0.632216 5.4:+21396655 MS.gene070872:CDS
GGCGAGACGAGGGACTTCGA+CGG 0.635249 5.4:+21400057 MS.gene070872:CDS
GTACCCAGGAACTAGTGGAT+AGG 0.637899 5.4:-21395921 None:intergenic
CCATTATTAAAGGAATGTGA+GGG 0.639713 5.4:-21396763 None:intergenic
TTCAAAGTTGGAGACAAAGT+GGG 0.640553 5.4:+21396082 MS.gene070872:CDS
GTTGGAGACAAAGTGGGTGT+GGG 0.640763 5.4:+21396088 MS.gene070872:CDS
AGAGGAGCAGCAGCTTCAAG+TGG 0.642094 5.4:-21396289 None:intergenic
TCGAGTCCAAAATATCGAAG+AGG 0.642096 5.4:-21396340 None:intergenic
CATTTCATAAAGAATGAATG+GGG 0.642561 5.4:+21395890 MS.gene070872:CDS
CCTTCTAAAGAAGTTGAAAG+GGG 0.647915 5.4:-21395663 None:intergenic
TACTTTAATAATCCAACTAG+AGG 0.647980 5.4:-21396692 None:intergenic
CAGACCAACGAAGAAGCTTG+CGG 0.661772 5.4:-21400104 None:intergenic
GTATTGTGGGATATGTCACT+CGG 0.663911 5.4:+21395862 MS.gene070872:CDS
ATGGAGCCATCACATATGGA+GGG 0.664619 5.4:+21396209 MS.gene070872:CDS
AAAGAAGCAATAGAACACCT+AGG 0.664810 5.4:+21396481 MS.gene070872:CDS
ACAATACCTATATTCATACC+AGG 0.667309 5.4:-21396367 None:intergenic
TGAATTTGAACATCCAAACA+AGG 0.679187 5.4:+21395601 MS.gene070872:CDS
GATTGCTGGTATAGTGACAG+AGG 0.748384 5.4:+21396039 MS.gene070872:CDS
TCGTGCATGTCAAAACTGTG+AGG 0.774244 5.4:+21396129 MS.gene070872:CDS
ACACAGTAATACCAGCACAG+AGG 0.790396 5.4:-21396312 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTGATAAAAATATATG+TGG - chr5.4:21399089-21399108 None:intergenic 10.0%
!! GTTATAATAATATTCTTAAT+TGG + chr5.4:21396566-21396585 MS.gene070872:intron 10.0%
!! AAAATTGAATTGAAATTCTT+TGG - chr5.4:21398799-21398818 None:intergenic 15.0%
!! AAATATAATTGTCTTTATGA+GGG - chr5.4:21397362-21397381 None:intergenic 15.0%
!! AAGTATTTATTTAAACCTAA+AGG + chr5.4:21397892-21397911 MS.gene070872:intron 15.0%
!! ATAATATTCTTAATTGGAAA+TGG + chr5.4:21396572-21396591 MS.gene070872:intron 15.0%
!! TCTAATTGATATATGATTAT+AGG + chr5.4:21396011-21396030 MS.gene070872:intron 15.0%
!!! AAAAATGTTTTTGTTTTTGT+TGG + chr5.4:21398040-21398059 MS.gene070872:intron 15.0%
!!! AATTTTTTAGGGATTTTTAA+AGG + chr5.4:21399323-21399342 MS.gene070872:intron 15.0%
!!! TATGTTAATTTTCTTACTTT+TGG - chr5.4:21398679-21398698 None:intergenic 15.0%
!!! TTTTATTTTAGTTGAATTGA+AGG + chr5.4:21397957-21397976 MS.gene070872:intron 15.0%
!!! TTTTGATTAAGAAAATGAAA+AGG + chr5.4:21398194-21398213 MS.gene070872:intron 15.0%
!! AAAAGATGTATAAAATGAAG+AGG - chr5.4:21395705-21395724 None:intergenic 20.0%
!! AAACAAAAATTCCTAAGATA+TGG - chr5.4:21395972-21395991 None:intergenic 20.0%
!! AAGAAAAAATAAGATATCAC+CGG - chr5.4:21397718-21397737 None:intergenic 20.0%
!! AAGATAAAACATATATATCG+TGG - chr5.4:21397651-21397670 None:intergenic 20.0%
!! AATATAATTGTCTTTATGAG+GGG - chr5.4:21397361-21397380 None:intergenic 20.0%
!! AATGAAAAGGAAAATTACAA+TGG + chr5.4:21398207-21398226 MS.gene070872:intron 20.0%
!! AATTATGGGTGAAAAAAAAA+AGG + chr5.4:21396849-21396868 MS.gene070872:intron 20.0%
!! AGTGTTATGAATATTATAAG+TGG - chr5.4:21397137-21397156 None:intergenic 20.0%
!! ATGAAAAGGAAAATTACAAT+GGG + chr5.4:21398208-21398227 MS.gene070872:intron 20.0%
!! CAAATATAATTGTCTTTATG+AGG - chr5.4:21397363-21397382 None:intergenic 20.0%
!! TATATGTTAGTGTTTGTTTA+GGG - chr5.4:21396174-21396193 None:intergenic 20.0%
!! TCATTTCATAAAGAATGAAT+GGG + chr5.4:21395889-21395908 MS.gene070872:CDS 20.0%
!! TGTTATGAAACTATTAGAAT+AGG + chr5.4:21396896-21396915 MS.gene070872:intron 20.0%
!! TTCATTTCATAAAGAATGAA+TGG + chr5.4:21395888-21395907 MS.gene070872:CDS 20.0%
!! TTCGTAAAATTCATATAACA+AGG + chr5.4:21398972-21398991 MS.gene070872:intron 20.0%
!!! AAGCATTTAAGACAAAAATT+AGG + chr5.4:21398850-21398869 MS.gene070872:intron 20.0%
!!! ACGATATATATGTTTTATCT+TGG + chr5.4:21397650-21397669 MS.gene070872:intron 20.0%
!!! GTGATATCTTATTTTTTCTT+GGG + chr5.4:21397718-21397737 MS.gene070872:intron 20.0%
!!! TAATTTTTGTCTTAAATGCT+TGG - chr5.4:21398851-21398870 None:intergenic 20.0%
!!! TATGTTTTATCTTGGTTTTT+CGG + chr5.4:21397658-21397677 MS.gene070872:intron 20.0%
!!! TGAAAATGAATTTTAGAGAA+TGG + chr5.4:21398076-21398095 MS.gene070872:intron 20.0%
!!! TTGGCTAAATATTTATTTCT+TGG + chr5.4:21395785-21395804 MS.gene070872:intron 20.0%
!!! TTTTTCATGAAGAGATTAAA+TGG + chr5.4:21399493-21399512 MS.gene070872:intron 20.0%
! AAAATTCAGCAAAACGAAAA+TGG + chr5.4:21399556-21399575 MS.gene070872:intron 25.0%
! AAGAAGAAAAGAAAAGAATG+AGG - chr5.4:21399729-21399748 None:intergenic 25.0%
! ACATCAAATACTCAAGATTA+AGG + chr5.4:21398999-21399018 MS.gene070872:intron 25.0%
! ACTTTAACAAACCATATCTT+AGG + chr5.4:21395958-21395977 MS.gene070872:intron 25.0%
! AGCAAAAACAAATGTGAAAT+AGG + chr5.4:21398708-21398727 MS.gene070872:intron 25.0%
! ATAGAGAAATACAATGACTT+GGG + chr5.4:21397023-21397042 MS.gene070872:intron 25.0%
! ATAGATGAAAGAATGAAGAA+AGG - chr5.4:21399798-21399817 None:intergenic 25.0%
! ATATAATTGTCTTTATGAGG+GGG - chr5.4:21397360-21397379 None:intergenic 25.0%
! ATGAGATTTATGAAATTGTG+AGG + chr5.4:21398120-21398139 MS.gene070872:intron 25.0%
! ATGATACCTTAGAAAGAAAA+CGG + chr5.4:21400036-21400055 MS.gene070872:intron 25.0%
! ATTCATTCACAAACAAAACT+TGG + chr5.4:21398886-21398905 MS.gene070872:intron 25.0%
! CAAAACTTACCCATTATTAA+AGG - chr5.4:21396776-21396795 None:intergenic 25.0%
! CATCAAATACTCAAGATTAA+GGG + chr5.4:21399000-21399019 MS.gene070872:intron 25.0%
! CATTTCATAAAGAATGAATG+GGG + chr5.4:21395890-21395909 MS.gene070872:CDS 25.0%
! CTATATGTTAGTGTTTGTTT+AGG - chr5.4:21396175-21396194 None:intergenic 25.0%
! GAAAATGATTAAGAACACAT+AGG + chr5.4:21399300-21399319 MS.gene070872:intron 25.0%
! GTTGAGAATGTTCTTTATTA+AGG - chr5.4:21397584-21397603 None:intergenic 25.0%
! TAAAGTGCAAGAAATTAAAG+TGG + chr5.4:21398558-21398577 MS.gene070872:intron 25.0%
! TACTTTAATAATCCAACTAG+AGG - chr5.4:21396695-21396714 None:intergenic 25.0%
! TATAATCCTCATACTTCAAA+GGG + chr5.4:21398770-21398789 MS.gene070872:intron 25.0%
! TATAGAGAAATACAATGACT+TGG + chr5.4:21397022-21397041 MS.gene070872:intron 25.0%
! TGACTTTGAATCCATAAAAT+TGG - chr5.4:21398947-21398966 None:intergenic 25.0%
! TGCTAATTTAGAGAAGAATA+TGG - chr5.4:21397471-21397490 None:intergenic 25.0%
! TTAATCTTGAGTATTTGATG+TGG - chr5.4:21399000-21399019 None:intergenic 25.0%
! TTAGTAAATGCAGATAATCA+AGG - chr5.4:21397609-21397628 None:intergenic 25.0%
! TTATACATACAAGAAACTTG+CGG - chr5.4:21397552-21397571 None:intergenic 25.0%
!! AACCATTTTCTAATAAACCT+TGG - chr5.4:21398243-21398262 None:intergenic 25.0%
!! ACCATTTTCTAATAAACCTT+GGG - chr5.4:21398242-21398261 None:intergenic 25.0%
!! AGGTCTCTAAAAAACTAATT+TGG + chr5.4:21396869-21396888 MS.gene070872:intron 25.0%
!! ATTTTCACAAAGAGGATTAA+AGG + chr5.4:21398814-21398833 MS.gene070872:intron 25.0%
!! GAACGCATAGAAAAATTTTT+AGG + chr5.4:21399469-21399488 MS.gene070872:intron 25.0%
!! GAGATATGTATGAAACTTTT+TGG + chr5.4:21399150-21399169 MS.gene070872:intron 25.0%
!! GTTGGATTATTAAAGTATCA+CGG + chr5.4:21396698-21396717 MS.gene070872:CDS 25.0%
!! TATTCTAGCTATATTTCAAG+TGG + chr5.4:21398365-21398384 MS.gene070872:intron 25.0%
!! TCAATTCAATTTTCACAAAG+AGG + chr5.4:21398806-21398825 MS.gene070872:intron 25.0%
!! TTGATGCCAAATGATTTTAT+AGG + chr5.4:21396610-21396629 MS.gene070872:intron 25.0%
!!! AAGTTGATTTTTCCTAAGTA+TGG + chr5.4:21398290-21398309 MS.gene070872:intron 25.0%
!!! ACTAGAATTTTTTTTCCCAT+TGG - chr5.4:21397215-21397234 None:intergenic 25.0%
!!! AGAACACATAGGAATTTTTT+AGG + chr5.4:21399311-21399330 MS.gene070872:intron 25.0%
!!! ATCTTATTTTTTCTTGGGAA+GGG + chr5.4:21397723-21397742 MS.gene070872:intron 25.0%
!!! ATGTTTTATCTTGGTTTTTC+GGG + chr5.4:21397659-21397678 MS.gene070872:intron 25.0%
!!! CATTTAAAGTACTGTATTGT+GGG + chr5.4:21395849-21395868 MS.gene070872:CDS 25.0%
!!! CATTTTTTGAAAGAGAACTA+CGG - chr5.4:21398027-21398046 None:intergenic 25.0%
!!! CTAGAATTTTTTTTCCCATT+GGG - chr5.4:21397214-21397233 None:intergenic 25.0%
!!! CTTTAATAATGGGTAAGTTT+TGG + chr5.4:21396774-21396793 MS.gene070872:intron 25.0%
!!! GAACACATAGGAATTTTTTA+GGG + chr5.4:21399312-21399331 MS.gene070872:intron 25.0%
!!! GCTTTAGGCTTTAAAATTAT+GGG + chr5.4:21396835-21396854 MS.gene070872:intron 25.0%
!!! GGATTTTTAAAGGCTTTTTT+AGG + chr5.4:21399333-21399352 MS.gene070872:intron 25.0%
!!! GGTGATATCTTATTTTTTCT+TGG + chr5.4:21397717-21397736 MS.gene070872:intron 25.0%
!!! GTGATATTGTTCATGTTTTT+TGG + chr5.4:21398266-21398285 MS.gene070872:intron 25.0%
!!! TATCTTATTTTTTCTTGGGA+AGG + chr5.4:21397722-21397741 MS.gene070872:intron 25.0%
!!! TGGATTAGTAATTTGCAAAA+AGG + chr5.4:21398144-21398163 MS.gene070872:intron 25.0%
AAAAAATCATCACCAATGCA+AGG + chr5.4:21398734-21398753 MS.gene070872:intron 30.0%
AAAGTAGAGAAGTTCAAAGT+TGG + chr5.4:21396070-21396089 MS.gene070872:CDS 30.0%
AAAGTAGAGAGAAGTAAAGA+AGG + chr5.4:21396928-21396947 MS.gene070872:intron 30.0%
AAATTAAAGACGGTTCCTAT+AGG - chr5.4:21397836-21397855 None:intergenic 30.0%
AACAAAACAGATCGAATCAA+AGG + chr5.4:21400004-21400023 MS.gene070872:intron 30.0%
ACAATACCTATATTCATACC+AGG - chr5.4:21396370-21396389 None:intergenic 30.0%
ATAGGTTACTATAGTCGTTA+TGG - chr5.4:21397818-21397837 None:intergenic 30.0%
ATGAAGAGATTAAATGGACA+GGG + chr5.4:21399499-21399518 MS.gene070872:intron 30.0%
ATTGCTTCTTTCTCTTTGTT+GGG - chr5.4:21396472-21396491 None:intergenic 30.0%
CATATAGCAATTGGGTTATT+GGG - chr5.4:21397109-21397128 None:intergenic 30.0%
CATTGTCATATGTTGAATCT+TGG - chr5.4:21399265-21399284 None:intergenic 30.0%
CCAAGAAATTAAAAGACATG+AGG + chr5.4:21398483-21398502 MS.gene070872:intron 30.0%
CCATTATTAAAGGAATGTGA+GGG - chr5.4:21396766-21396785 None:intergenic 30.0%
CCTCACATTCCTTTAATAAT+GGG + chr5.4:21396764-21396783 MS.gene070872:CDS 30.0%
CTATAATCCTCATACTTCAA+AGG + chr5.4:21398769-21398788 MS.gene070872:intron 30.0%
GATTTATGAAATTGTGAGGT+TGG + chr5.4:21398124-21398143 MS.gene070872:intron 30.0%
GCATGTTTAGATGTATGTTT+AGG - chr5.4:21398344-21398363 None:intergenic 30.0%
GGGAAAAAAAATTCTAGTGA+AGG + chr5.4:21397217-21397236 MS.gene070872:intron 30.0%
GTATAAAATGAAGAGGTGAA+TGG - chr5.4:21395698-21395717 None:intergenic 30.0%
GTATGATGTAATAAGGACAA+TGG - chr5.4:21398437-21398456 None:intergenic 30.0%
TAACGACTATAGTAACCTAT+AGG + chr5.4:21397818-21397837 MS.gene070872:intron 30.0%
TAGAGAAATACAATGACTTG+GGG + chr5.4:21397024-21397043 MS.gene070872:intron 30.0%
TAGGTTACTATAGTCGTTAT+GGG - chr5.4:21397817-21397836 None:intergenic 30.0%
TATGTTGAGAACAATGTTGT+TGG + chr5.4:21395766-21395785 MS.gene070872:intron 30.0%
TATTGCTTCTTTCTCTTTGT+TGG - chr5.4:21396473-21396492 None:intergenic 30.0%
TCCCAAGGTTTATTAGAAAA+TGG + chr5.4:21398238-21398257 MS.gene070872:intron 30.0%
TGAATTTGAACATCCAAACA+AGG + chr5.4:21395601-21395620 MS.gene070872:CDS 30.0%
TTACTAGAGAAAAACCCAAT+GGG + chr5.4:21397197-21397216 MS.gene070872:intron 30.0%
TTGTTTGGATGTTCAAATTC+AGG - chr5.4:21395602-21395621 None:intergenic 30.0%
TTTCTTGGTCATGACTTATA+AGG - chr5.4:21396519-21396538 None:intergenic 30.0%
! AACCTTCTAAAGAAGTTGAA+AGG - chr5.4:21395668-21395687 None:intergenic 30.0%
! AATATAGGTATTGTTGGTCT+TGG + chr5.4:21396376-21396395 MS.gene070872:CDS 30.0%
! ACCTTCTAAAGAAGTTGAAA+GGG - chr5.4:21395667-21395686 None:intergenic 30.0%
! ATCTAGGGTATGATGTAATA+AGG - chr5.4:21398444-21398463 None:intergenic 30.0%
! GGTATGAATATAGGTATTGT+TGG + chr5.4:21396370-21396389 MS.gene070872:CDS 30.0%
! TACGTTTGAACCTTTTAAAC+CGG + chr5.4:21397696-21397715 MS.gene070872:intron 30.0%
! TATAGTCCTCTTCGATATTT+TGG + chr5.4:21396334-21396353 MS.gene070872:CDS 30.0%
! TGCGGTTTTCTAATTTTGAA+AGG - chr5.4:21397534-21397553 None:intergenic 30.0%
!! CATATCTCTTGATAGTTTTG+TGG - chr5.4:21399138-21399157 None:intergenic 30.0%
!! CTTTGAAGTATGAGGATTAT+AGG - chr5.4:21398771-21398790 None:intergenic 30.0%
!! GCATTTAAAGTACTGTATTG+TGG + chr5.4:21395848-21395867 MS.gene070872:CDS 30.0%
!! GGCTTTAGGCTTTAAAATTA+TGG + chr5.4:21396834-21396853 MS.gene070872:intron 30.0%
!! GGTTTTCTAATTTTGAAAGG+AGG - chr5.4:21397531-21397550 None:intergenic 30.0%
!! TAAGATATCACCGGTTTAAA+AGG - chr5.4:21397709-21397728 None:intergenic 30.0%
!! TCTCTAGTAAGGTTTTAATG+AGG - chr5.4:21397187-21397206 None:intergenic 30.0%
!! TTTAAACCTAAAGGTGTTCT+AGG + chr5.4:21397901-21397920 MS.gene070872:intron 30.0%
!!! CCTCATGTCTTTTAATTTCT+TGG - chr5.4:21398486-21398505 None:intergenic 30.0%
!!! CTTTTAATTTCTTGGCAAAG+AGG - chr5.4:21398478-21398497 None:intergenic 30.0%
!!! TGCATTGGTGATGATTTTTT+AGG - chr5.4:21398734-21398753 None:intergenic 30.0%
AAAGAAGCAATAGAACACCT+AGG + chr5.4:21396481-21396500 MS.gene070872:CDS 35.0%
AAGGAAAGAACACATATCCA+TGG + chr5.4:21399929-21399948 MS.gene070872:intron 35.0%
CAAACAAAACTTGGAACTCA+AGG + chr5.4:21398895-21398914 MS.gene070872:intron 35.0%
CATACCCTAGATACATTCTA+TGG + chr5.4:21398452-21398471 MS.gene070872:intron 35.0%
CATGAAGAGATTAAATGGAC+AGG + chr5.4:21399498-21399517 MS.gene070872:intron 35.0%
CCAATAACCCAATTGCTATA+TGG + chr5.4:21397107-21397126 MS.gene070872:intron 35.0%
CCATATAGCAATTGGGTTAT+TGG - chr5.4:21397110-21397129 None:intergenic 35.0%
CCCATTATTAAAGGAATGTG+AGG - chr5.4:21396767-21396786 None:intergenic 35.0%
CCCTCACATTCCTTTAATAA+TGG + chr5.4:21396763-21396782 MS.gene070872:CDS 35.0%
CTTACTAGAGAAAAACCCAA+TGG + chr5.4:21397196-21397215 MS.gene070872:intron 35.0%
GACTTAGCATGTAAAAGCTT+AGG - chr5.4:21398527-21398546 None:intergenic 35.0%
GTATCACGGAAAACTTGTAA+TGG + chr5.4:21396712-21396731 MS.gene070872:CDS 35.0%
GTATGTTTAGATGAATGCCT+AGG - chr5.4:21398318-21398337 None:intergenic 35.0%
GTCATGATCTTTCAGAGAAA+CGG + chr5.4:21395811-21395830 MS.gene070872:intron 35.0%
GTGAAAATTGTGCATGATCT+TGG - chr5.4:21399026-21399045 None:intergenic 35.0%
TAAAATGAAGAGGTGAATGG+AGG - chr5.4:21395695-21395714 None:intergenic 35.0%
TACTCAAAAGCTTCACTTGA+TGG + chr5.4:21397417-21397436 MS.gene070872:intron 35.0%
TATAGTGCCAAATACAGTGA+TGG + chr5.4:21396190-21396209 MS.gene070872:CDS 35.0%
TCATGATCTTTCAGAGAAAC+GGG + chr5.4:21395812-21395831 MS.gene070872:intron 35.0%
TCGCAGCCTATAAAATCATT+TGG - chr5.4:21396619-21396638 None:intergenic 35.0%
TCTTTCCTTGCGTTGAATTT+CGG - chr5.4:21399918-21399937 None:intergenic 35.0%
TGAAGAGATTAAATGGACAG+GGG + chr5.4:21399500-21399519 MS.gene070872:intron 35.0%
TGGATGTCCATATAGCAATT+GGG - chr5.4:21397117-21397136 None:intergenic 35.0%
TTAATGAGGCATATCATCGA+TGG - chr5.4:21397173-21397192 None:intergenic 35.0%
TTCAAAGTTGGAGACAAAGT+GGG + chr5.4:21396082-21396101 MS.gene070872:CDS 35.0%
TTCTCTTGTGATGTGCAATT+AGG + chr5.4:21396981-21397000 MS.gene070872:intron 35.0%
TTTGAGGAGAAGAGAATTGT+AGG - chr5.4:21399834-21399853 None:intergenic 35.0%
! AATCTTGGTTAGAAAGTGTG+TGG - chr5.4:21399250-21399269 None:intergenic 35.0%
! AATGATTTTATAGGCTGCGA+CGG + chr5.4:21396619-21396638 MS.gene070872:intron 35.0%
! AGCTTTTACATGCTAAGTCT+TGG + chr5.4:21398528-21398547 MS.gene070872:intron 35.0%
! CACAAACAGCACCAATTTTA+TGG + chr5.4:21398933-21398952 MS.gene070872:intron 35.0%
! CACTCTTTTTCTCTTAACCA+TGG - chr5.4:21397319-21397338 None:intergenic 35.0%
! CATTGGGTTTTTCTCTAGTA+AGG - chr5.4:21397198-21397217 None:intergenic 35.0%
! CCTTCTAAAGAAGTTGAAAG+GGG - chr5.4:21395666-21395685 None:intergenic 35.0%
! GGGTCATACTATTAGCTTAT+TGG - chr5.4:21397089-21397108 None:intergenic 35.0%
! GTGAAGTTTGCAAAAGCTTT+TGG + chr5.4:21396418-21396437 MS.gene070872:CDS 35.0%
! TCCTGGTAAGGTTTTTAATG+AGG - chr5.4:21397278-21397297 None:intergenic 35.0%
! TTGTGTGTGTTAGTGTTTTG+AGG - chr5.4:21399850-21399869 None:intergenic 35.0%
! TTTGTACCTGCATCTTTTCT+TGG - chr5.4:21396534-21396553 None:intergenic 35.0%
! TTTTCCTAAGTATGGATCCT+AGG + chr5.4:21398298-21398317 MS.gene070872:intron 35.0%
!! TTGTGTTGTTTAGTGCTTGT+TGG - chr5.4:21399679-21399698 None:intergenic 35.0%
!! TTTTTGAAAGAGAACTACGG+TGG - chr5.4:21398024-21398043 None:intergenic 35.0%
AAGAACGGGTCAAAGCAAAT+TGG + chr5.4:21399617-21399636 MS.gene070872:intron 40.0%
AATGCCTAGGATCCATACTT+AGG - chr5.4:21398305-21398324 None:intergenic 40.0%
AGAAAAGAATGAGGACGATG+AGG - chr5.4:21399720-21399739 None:intergenic 40.0%
AGACTTAAGAGGGAAAGAAC+GGG + chr5.4:21399603-21399622 MS.gene070872:intron 40.0%
AGAGGCCATAGAATGTATCT+AGG - chr5.4:21398460-21398479 None:intergenic 40.0%
ATATCATCGATGGACATCCA+AGG - chr5.4:21397163-21397182 None:intergenic 40.0%
ATATTCATAACACTCCCCCT+TGG + chr5.4:21397143-21397162 MS.gene070872:intron 40.0%
CACGGAAAACTTGTAATGGT+CGG + chr5.4:21396716-21396735 MS.gene070872:CDS 40.0%
CAGACTTAAGAGGGAAAGAA+CGG + chr5.4:21399602-21399621 MS.gene070872:intron 40.0%
CATACTCTCTTACCTCTAGT+TGG + chr5.4:21396680-21396699 MS.gene070872:CDS 40.0%
CATCATCGATACAGTTTCAG+CGG + chr5.4:21396655-21396674 MS.gene070872:CDS 40.0%
CCCCTTTCAACTTCTTTAGA+AGG + chr5.4:21395663-21395682 MS.gene070872:CDS 40.0%
CGCAAGGAAAGAAGAATTGA+CGG + chr5.4:21399963-21399982 MS.gene070872:intron 40.0%
GAAGCTGAAGCAAGGAAAAT+TGG - chr5.4:21400198-21400217 None:intergenic 40.0%
GACAAGCCTGGTATGAATAT+AGG + chr5.4:21396361-21396380 MS.gene070872:CDS 40.0%
GAGGCCATAGAATGTATCTA+GGG - chr5.4:21398459-21398478 None:intergenic 40.0%
GATTATAGGCATGAGATTGC+TGG + chr5.4:21396025-21396044 MS.gene070872:intron 40.0%
GATTATGTGACTGTGTGTGT+GGG - chr5.4:21399768-21399787 None:intergenic 40.0%
GCAACATAAGCACATATCCA+TGG + chr5.4:21399892-21399911 MS.gene070872:intron 40.0%
GCCTCATTAAAAACCTTACC+AGG + chr5.4:21397274-21397293 MS.gene070872:intron 40.0%
GTATTGTGGGATATGTCACT+CGG + chr5.4:21395862-21395881 MS.gene070872:CDS 40.0%
GTCATATTCAAGCCTTGCAT+TGG - chr5.4:21398749-21398768 None:intergenic 40.0%
GTGGAGAAAGAGATGAGATA+TGG + chr5.4:21398577-21398596 MS.gene070872:intron 40.0%
GTGGATGTCCATATAGCAAT+TGG - chr5.4:21397118-21397137 None:intergenic 40.0%
GTGGATTTGATCCCTTAAAC+GGG - chr5.4:21398005-21398024 None:intergenic 40.0%
GTTCAAAGTTGGAGACAAAG+TGG + chr5.4:21396081-21396100 MS.gene070872:CDS 40.0%
GTTCTTTCCCTCTTAAGTCT+GGG - chr5.4:21399603-21399622 None:intergenic 40.0%
TAAGGAATGAATCAGCTCCT+AGG - chr5.4:21396501-21396520 None:intergenic 40.0%
TATCATCGATGGACATCCAA+GGG - chr5.4:21397162-21397181 None:intergenic 40.0%
TCATAAATCTCATGCCCTTG+AGG - chr5.4:21398113-21398132 None:intergenic 40.0%
TCATGACCAAGAAAAGATGC+AGG + chr5.4:21396525-21396544 MS.gene070872:CDS 40.0%
TCGAGTCCAAAATATCGAAG+AGG - chr5.4:21396343-21396362 None:intergenic 40.0%
TCTTCACCTAGAACACCTTT+AGG - chr5.4:21397910-21397929 None:intergenic 40.0%
TGATTATGTGACTGTGTGTG+TGG - chr5.4:21399769-21399788 None:intergenic 40.0%
TTTAGAGAATGGAGATCGAG+AGG + chr5.4:21398087-21398106 MS.gene070872:intron 40.0%
TTTGTAGTTCGCATTCCTGA+TGG + chr5.4:21396262-21396281 MS.gene070872:CDS 40.0%
! ACAGATTTGAAGCTGAAGCA+AGG - chr5.4:21400206-21400225 None:intergenic 40.0%
! AGGTGTTCTAGGTGAAGAAT+TGG + chr5.4:21397912-21397931 MS.gene070872:intron 40.0%
! ATCCAAACAAGGCATTTGGT+TGG + chr5.4:21395612-21395631 MS.gene070872:CDS 40.0%
! ATGATTTTATAGGCTGCGAC+GGG + chr5.4:21396620-21396639 MS.gene070872:intron 40.0%
! GAACATCCAAACAAGGCATT+TGG + chr5.4:21395608-21395627 MS.gene070872:CDS 40.0%
! GGTGGATTTGATCCCTTAAA+CGG - chr5.4:21398006-21398025 None:intergenic 40.0%
! GTTCTAGGTGAAGAATTGGA+GGG + chr5.4:21397916-21397935 MS.gene070872:intron 40.0%
! TCCAAACAAGGCATTTGGTT+GGG + chr5.4:21395613-21395632 MS.gene070872:CDS 40.0%
! TGGAGGGAGAAGAATGTTTT+TGG + chr5.4:21397932-21397951 MS.gene070872:intron 40.0%
! TGTTCTAGGTGAAGAATTGG+AGG + chr5.4:21397915-21397934 MS.gene070872:intron 40.0%
! TTGTTTAGTGCTTGTTGGAC+CGG - chr5.4:21399674-21399693 None:intergenic 40.0%
!! AATGGGTAAGTTTTGGTGCA+GGG + chr5.4:21396781-21396800 MS.gene070872:intron 40.0%
!! ACAATGGGATTTTGATCCCA+AGG + chr5.4:21398223-21398242 MS.gene070872:intron 40.0%
!! ATAGGTATTGTTGGTCTTGG+TGG + chr5.4:21396379-21396398 MS.gene070872:CDS 40.0%
!! GATTCGATCTGTTTTGTTGC+TGG - chr5.4:21400002-21400021 None:intergenic 40.0%
!! TAATGGGTAAGTTTTGGTGC+AGG + chr5.4:21396780-21396799 MS.gene070872:intron 40.0%
!! TGGAAACCCTTTGAAGTATG+AGG - chr5.4:21398779-21398798 None:intergenic 40.0%
!!! AACCATGGTTTTATCCCACT+GGG - chr5.4:21397304-21397323 None:intergenic 40.0%
!!! TAACCATGGTTTTATCCCAC+TGG - chr5.4:21397305-21397324 None:intergenic 40.0%
AAAGCCTAAAGCCCATGCTT+GGG - chr5.4:21396827-21396846 None:intergenic 45.0%
AACCCAGTGGGATAAAACCA+TGG + chr5.4:21397299-21397318 MS.gene070872:intron 45.0%
AACGAAGAAGCTTGCGGATT+CGG - chr5.4:21400101-21400120 None:intergenic 45.0%
AATTCGAAGCATACGTACCC+AGG - chr5.4:21395938-21395957 None:intergenic 45.0%
ACACAGTAATACCAGCACAG+AGG - chr5.4:21396315-21396334 None:intergenic 45.0%
AGCAAAACCCTTGAGAATCG+AGG + chr5.4:21397754-21397773 MS.gene070872:intron 45.0%
AGTGGTGTGTGTGTATGTGT+CGG + chr5.4:21398383-21398402 MS.gene070872:intron 45.0%
ATCATCGATGGACATCCAAG+GGG - chr5.4:21397161-21397180 None:intergenic 45.0%
ATGAGGAAAGAGAGAAGGAG+TGG - chr5.4:21399703-21399722 None:intergenic 45.0%
ATGGAGCCATCACATATGGA+GGG + chr5.4:21396209-21396228 MS.gene070872:CDS 45.0%
CGTTCTTTCCCTCTTAAGTC+TGG - chr5.4:21399604-21399623 None:intergenic 45.0%
CTACCTATCCACTAGTTCCT+GGG + chr5.4:21395918-21395937 MS.gene070872:CDS 45.0%
CTTAGGGAGCAAGCACAATA+TGG + chr5.4:21397062-21397081 MS.gene070872:intron 45.0%
GAGCAAGCACCAATGACTTA+GGG + chr5.4:21397046-21397065 MS.gene070872:intron 45.0%
GATGGCTCCATCACTGTATT+TGG - chr5.4:21396200-21396219 None:intergenic 45.0%
GATTGCTGGTATAGTGACAG+AGG + chr5.4:21396039-21396058 MS.gene070872:CDS 45.0%
GCGCGCGTAGAAATTAAAGA+CGG - chr5.4:21397846-21397865 None:intergenic 45.0%
TAAAGCCTAAAGCCCATGCT+TGG - chr5.4:21396828-21396847 None:intergenic 45.0%
TCGTGCATGTCAAAACTGTG+AGG + chr5.4:21396129-21396148 MS.gene070872:CDS 45.0%
TCTACCTATCCACTAGTTCC+TGG + chr5.4:21395917-21395936 MS.gene070872:CDS 45.0%
TTGCCTACGTACCCGTTTAA+GGG + chr5.4:21397991-21398010 MS.gene070872:intron 45.0%
! AAAGCAAATTGGACCGGTTC+AGG + chr5.4:21399628-21399647 MS.gene070872:intron 45.0%
! AAATTGGACCGGTTCAGGAA+CGG + chr5.4:21399633-21399652 MS.gene070872:intron 45.0%
! AGAGTACCCTCCATATGTGA+TGG - chr5.4:21396218-21396237 None:intergenic 45.0%
! AGTGATGGAGCCATCACATA+TGG + chr5.4:21396205-21396224 MS.gene070872:CDS 45.0%
! GCAAGAATCATTTTGCGGTG+TGG + chr5.4:21399524-21399543 MS.gene070872:intron 45.0%
! GGGGTGCAAGAATCATTTTG+CGG + chr5.4:21399519-21399538 MS.gene070872:intron 45.0%
! TTTATCCCACTGGGTTTTCC+TGG - chr5.4:21397295-21397314 None:intergenic 45.0%
!! ATTGTTGGTCTTGGTGGACT+TGG + chr5.4:21396385-21396404 MS.gene070872:CDS 45.0%
!! GTCTCGCCGTTTTCTTTCTA+AGG - chr5.4:21400045-21400064 None:intergenic 45.0%
!! TATTTTGGACTCGACAAGCC+TGG + chr5.4:21396349-21396368 MS.gene070872:CDS 45.0%
AACCCTTGAGAATCGAGGTC+CGG + chr5.4:21397759-21397778 MS.gene070872:intron 50.0%
ACCTTACCAGGAAAACCCAG+TGG + chr5.4:21397286-21397305 MS.gene070872:intron 50.0%
AGAAAGAAAACGGCGAGACG+AGG + chr5.4:21400046-21400065 MS.gene070872:intron 50.0%
AGTTGGAGACAAAGTGGGTG+TGG + chr5.4:21396087-21396106 MS.gene070872:CDS 50.0%
CAGACCAACGAAGAAGCTTG+CGG - chr5.4:21400107-21400126 None:intergenic 50.0%
CATACGTACCCAGGAACTAG+TGG - chr5.4:21395929-21395948 None:intergenic 50.0%
CATGGCCGAAATTCAACGCA+AGG + chr5.4:21399910-21399929 MS.gene070872:intron 50.0%
CCTTACCAGGAAAACCCAGT+GGG + chr5.4:21397287-21397306 MS.gene070872:intron 50.0%
CGGGTCAAAGCAAATTGGAC+CGG + chr5.4:21399622-21399641 MS.gene070872:intron 50.0%
CTTAAACGGGTACGTAGGCA+AGG - chr5.4:21397992-21398011 None:intergenic 50.0%
CTTGCCTACGTACCCGTTTA+AGG + chr5.4:21397990-21398009 MS.gene070872:intron 50.0%
CTTGCGTTGAATTTCGGCCA+TGG - chr5.4:21399912-21399931 None:intergenic 50.0%
GAAAGAAAACGGCGAGACGA+GGG + chr5.4:21400047-21400066 MS.gene070872:intron 50.0%
GAATCCGCAAGCTTCTTCGT+TGG + chr5.4:21400100-21400119 MS.gene070872:CDS 50.0%
GATCCCTTAAACGGGTACGT+AGG - chr5.4:21397997-21398016 None:intergenic 50.0%
GATGGAGCCATCACATATGG+AGG + chr5.4:21396208-21396227 MS.gene070872:CDS 50.0%
GCTGGTATAGTGACAGAGGT+GGG + chr5.4:21396043-21396062 MS.gene070872:CDS 50.0%
GCTTCAAGTGGTAAGCCATC+AGG - chr5.4:21396280-21396299 None:intergenic 50.0%
GGACGATGAGGAAAGAGAGA+AGG - chr5.4:21399708-21399727 None:intergenic 50.0%
GGAGCAAGCACCAATGACTT+AGG + chr5.4:21397045-21397064 MS.gene070872:intron 50.0%
GTAATACCAGCACAGAGGAG+AGG - chr5.4:21396310-21396329 None:intergenic 50.0%
GTGACTGTGTGTGTGGGAAT+GGG - chr5.4:21399762-21399781 None:intergenic 50.0%
GTGCTTGCTCCCTAAGTCAT+TGG - chr5.4:21397058-21397077 None:intergenic 50.0%
GTTGGAGACAAAGTGGGTGT+GGG + chr5.4:21396088-21396107 MS.gene070872:CDS 50.0%
TCATCGATGGACATCCAAGG+GGG - chr5.4:21397160-21397179 None:intergenic 50.0%
TCCCTCTTAAGTCTGGGCTT+GGG - chr5.4:21399597-21399616 None:intergenic 50.0%
TGCTGGTATAGTGACAGAGG+TGG + chr5.4:21396042-21396061 MS.gene070872:CDS 50.0%
TGTGACTGTGTGTGTGGGAA+TGG - chr5.4:21399763-21399782 None:intergenic 50.0%
TTCCCTCTTAAGTCTGGGCT+TGG - chr5.4:21399598-21399617 None:intergenic 50.0%
! AATTGGACCGGTTCAGGAAC+GGG + chr5.4:21399634-21399653 MS.gene070872:intron 50.0%
! GCCCAACCAAATGCCTTGTT+TGG - chr5.4:21395617-21395636 None:intergenic 50.0%
! GTACCCAGGAACTAGTGGAT+AGG - chr5.4:21395924-21395943 None:intergenic 50.0%
! GTATGTGTCGGTGCTTGTGT+CGG + chr5.4:21398395-21398414 MS.gene070872:intron 50.0%
! TAGTGCTTGTTGGACCGGTT+CGG - chr5.4:21399669-21399688 None:intergenic 50.0%
!! CTTGGTGGACTTGGTCACTT+GGG + chr5.4:21396394-21396413 MS.gene070872:CDS 50.0%
!! GAGTTGTTTTCGCTACGGGA+AGG + chr5.4:21397782-21397801 MS.gene070872:intron 50.0%
!! TCCGGGAGTTGTTTTCGCTA+CGG + chr5.4:21397777-21397796 MS.gene070872:intron 50.0%
!! TCTTGGTGGACTTGGTCACT+TGG + chr5.4:21396393-21396412 MS.gene070872:CDS 50.0%
!! TGGAGGGTACTCTGACTCAA+TGG + chr5.4:21396225-21396244 MS.gene070872:CDS 50.0%
!! TTTCGCTACGGGAAGGTGTT+AGG + chr5.4:21397789-21397808 MS.gene070872:intron 50.0%
ACCCTTGAGAATCGAGGTCC+GGG + chr5.4:21397760-21397779 MS.gene070872:intron 55.0%
AGAGGAGCAGCAGCTTCAAG+TGG - chr5.4:21396292-21396311 None:intergenic 55.0%
AGCCCAAGCCCAGACTTAAG+AGG + chr5.4:21399592-21399611 MS.gene070872:intron 55.0%
AGGAATGTGAGGGAGCTCCA+TGG - chr5.4:21396756-21396775 None:intergenic 55.0%
ATAGGCTGCGACGGGTACTT+TGG + chr5.4:21396628-21396647 MS.gene070872:intron 55.0%
ATGGAGATCGAGAGGCCTCA+AGG + chr5.4:21398095-21398114 MS.gene070872:intron 55.0%
CCCGTAGCGAAAACAACTCC+CGG - chr5.4:21397781-21397800 None:intergenic 55.0%
CGCAAGCTTCTTCGTTGGTC+TGG + chr5.4:21400105-21400124 MS.gene070872:CDS 55.0%
GCAACCCAAGCATGGGCTTT+AGG + chr5.4:21396820-21396839 MS.gene070872:intron 55.0%
GCCCAAGCCCAGACTTAAGA+GGG + chr5.4:21399593-21399612 MS.gene070872:intron 55.0%
GGAATGTGAGGGAGCTCCAT+GGG - chr5.4:21396755-21396774 None:intergenic 55.0%
TCCCGGACCTCGATTCTCAA+GGG - chr5.4:21397764-21397783 None:intergenic 55.0%
TGGAGATCGAGAGGCCTCAA+GGG + chr5.4:21398096-21398115 MS.gene070872:intron 55.0%
TGGGCAGCTAGAGACACTTC+TGG + chr5.4:21395632-21395651 MS.gene070872:CDS 55.0%
! AAGCCCATGCTTGGGTTGCT+TGG - chr5.4:21396819-21396838 None:intergenic 55.0%
! CCCACTGGGTTTTCCTGGTA+AGG - chr5.4:21397290-21397309 None:intergenic 55.0%
!! CCGGGAGTTGTTTTCGCTAC+GGG + chr5.4:21397778-21397797 MS.gene070872:intron 55.0%
!! GGTAAGTTTTGGTGCAGGGC+CGG + chr5.4:21396785-21396804 MS.gene070872:intron 55.0%
AGGGCCAAGCAACCCAAGCA+TGG + chr5.4:21396812-21396831 MS.gene070872:intron 60.0%
CGGTGCACCTCAGAATCCCA+TGG + chr5.4:21396736-21396755 MS.gene070872:CDS 60.0%
CTCCCGGACCTCGATTCTCA+AGG - chr5.4:21397765-21397784 None:intergenic 60.0%
GAACCGACCCGTTCCTGAAC+CGG - chr5.4:21399644-21399663 None:intergenic 60.0%
GCTGCGACGGGTACTTTGGA+TGG + chr5.4:21396632-21396651 MS.gene070872:CDS 60.0%
GGGAGCTCCATGGGATTCTG+AGG - chr5.4:21396746-21396765 None:intergenic 60.0%
GGGCCAAGCAACCCAAGCAT+GGG + chr5.4:21396813-21396832 MS.gene070872:intron 60.0%
! ACGGGTCGGTTCAACCGAAC+CGG + chr5.4:21399652-21399671 MS.gene070872:intron 60.0%
! GCTTGGGTTGCTTGGCCCTT+AGG - chr5.4:21396811-21396830 None:intergenic 60.0%
GCTGCTCCTCTCCTCTGTGC+TGG + chr5.4:21396301-21396320 MS.gene070872:CDS 65.0%
GGCGAGACGAGGGACTTCGA+CGG + chr5.4:21400057-21400076 MS.gene070872:CDS 65.0%
GGGTTGCTTGGCCCTTAGGC+CGG - chr5.4:21396807-21396826 None:intergenic 65.0%
TTGGTGCAGGGCCGGCCTAA+GGG + chr5.4:21396793-21396812 MS.gene070872:intron 65.0%
! GGACCGGTTCAGGAACGGGT+CGG + chr5.4:21399638-21399657 MS.gene070872:intron 65.0%
! TTTGGTGCAGGGCCGGCCTA+AGG + chr5.4:21396792-21396811 MS.gene070872:intron 65.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 21395587 21400232 21395587 ID=MS.gene070872
chr5.4 mRNA 21395587 21400232 21395587 ID=MS.gene070872.t1;Parent=MS.gene070872
chr5.4 exon 21395587 21395684 21395587 ID=MS.gene070872.t1.exon1;Parent=MS.gene070872.t1
chr5.4 CDS 21395587 21395684 21395587 ID=cds.MS.gene070872.t1;Parent=MS.gene070872.t1
chr5.4 exon 21395826 21395939 21395826 ID=MS.gene070872.t1.exon2;Parent=MS.gene070872.t1
chr5.4 CDS 21395826 21395939 21395826 ID=cds.MS.gene070872.t1;Parent=MS.gene070872.t1
chr5.4 exon 21396033 21396546 21396033 ID=MS.gene070872.t1.exon3;Parent=MS.gene070872.t1
chr5.4 CDS 21396033 21396546 21396033 ID=cds.MS.gene070872.t1;Parent=MS.gene070872.t1
chr5.4 exon 21396632 21396785 21396632 ID=MS.gene070872.t1.exon4;Parent=MS.gene070872.t1
chr5.4 CDS 21396632 21396785 21396632 ID=cds.MS.gene070872.t1;Parent=MS.gene070872.t1
chr5.4 exon 21400048 21400232 21400048 ID=MS.gene070872.t1.exon5;Parent=MS.gene070872.t1
chr5.4 CDS 21400048 21400232 21400048 ID=cds.MS.gene070872.t1;Parent=MS.gene070872.t1
Gene Sequence

>MS.gene070872

ATGGCAACACAACCTGAATTTGAACATCCAAACAAGGCATTTGGTTGGGCAGCTAGAGACACTTCTGGTGTTCTTTCCCCTTTCAACTTCTTTAGAAGGTTCATTCCTCCATTCACCTCTTCATTTTATACATCTTTTTAACTAAGAAAATGCTAACAATTGCTGAAATATTATTTTAATATGTTGAGAACAATGTTGTTGGCTAAATATTTATTTCTTGGTGTGTCATGATCTTTCAGAGAAACGGGTGAAAAAGATGTCGCATTTAAAGTACTGTATTGTGGGATATGTCACTCGGATCTTCATTTCATAAAGAATGAATGGGGCATGTCTACCTATCCACTAGTTCCTGGGTACGTATGCTTCGAATTACTTTAACAAACCATATCTTAGGAATTTTTGTTTTACTATACTTCAATTTTATTCTAATTGATATATGATTATAGGCATGAGATTGCTGGTATAGTGACAGAGGTGGGAAGCAAAGTAGAGAAGTTCAAAGTTGGAGACAAAGTGGGTGTGGGATGCTTAGTTGATTCGTGTCGTGCATGTCAAAACTGTGAGGAAAATCTTGAGAATTATTGCCCTAAACAAACACTAACATATAGTGCCAAATACAGTGATGGAGCCATCACATATGGAGGGTACTCTGACTCAATGGTTGCAGATGAGCACTTTGTAGTTCGCATTCCTGATGGCTTACCACTTGAAGCTGCTGCTCCTCTCCTCTGTGCTGGTATTACTGTGTATAGTCCTCTTCGATATTTTGGACTCGACAAGCCTGGTATGAATATAGGTATTGTTGGTCTTGGTGGACTTGGTCACTTGGGTGTGAAGTTTGCAAAAGCTTTTGGTGCTAATGTAACAGTAATTAGTACATCACCCAACAAAGAGAAAGAAGCAATAGAACACCTAGGAGCTGATTCATTCCTTATAAGTCATGACCAAGAAAAGATGCAGGTACAAATATAAAATCAAAGTTATAATAATATTCTTAATTGGAAATGGTAATCTATTAACTAATTGATGCCAAATGATTTTATAGGCTGCGACGGGTACTTTGGATGGCATCATCGATACAGTTTCAGCGGATCATACTCTCTTACCTCTAGTTGGATTATTAAAGTATCACGGAAAACTTGTAATGGTCGGTGCACCTCAGAATCCCATGGAGCTCCCTCACATTCCTTTAATAATGGGTAAGTTTTGGTGCAGGGCCGGCCTAAGGGCCAAGCAACCCAAGCATGGGCTTTAGGCTTTAAAATTATGGGTGAAAAAAAAAAGGTCTCTAAAAAACTAATTTGGTTATTGTTATGAAACTATTAGAATAGGAACAAGAATAAAGTAGAGAGAAGTAAAGAAGGAGAAAGAAAGTGAAGAGAATGATTCTATTATTCTCTTGTGATGTGCAATTAGGTTACATATGATCTCTATTTATAGAGAAATACAATGACTTGGGGAGCAAGCACCAATGACTTAGGGAGCAAGCACAATATGGTCCAATAAGCTAATAGTATGACCCAATAACCCAATTGCTATATGGACATCCACTTATAATATTCATAACACTCCCCCTTGGATGTCCATCGATGATATGCCTCATTAAAACCTTACTAGAGAAAAACCCAATGGGAAAAAAAATTCTAGTGAAGGAAAAAGAGTACAACATCATTTTTTGTCATAATCTGCCTCATTAAAAACCTTACCAGGAAAACCCAGTGGGATAAAACCATGGTTAAGAGAAAAAGAGTGCAGAACACATTTATCTCTCCCCCTCATAAAGACAATTATATTTGAGACGAAGAAAGTCAAATAATCTTTTATGCTTGTTACTCAAAAGCTTCACTTGATGGTGACTTTAAAGAAAGATCTGATTTATCTCCATATTCTTCTCTAAATTAGCAGCTCTTGAGATATCTTCTTATTGAGTTGTTGAAAAAACCTCCTTTCAAAATTAGAAAACCGCAAGTTTCTTGTATGTATAAAATCATAATCCTTAATAAAGAACATTCTCAACTTCCTTGATTATCTGCATTTACTAATATTCACAAAAACAAAATACCACGATATATATGTTTTATCTTGGTTTTTCGGGTGTCAAACATTGATTACGTTTGAACCTTTTAAACCGGTGATATCTTATTTTTTCTTGGGAAGGGAAAAAGTAAGCAAAACCCTTGAGAATCGAGGTCCGGGAGTTGTTTTCGCTACGGGAAGGTGTTAGGCACCCATAACGACTATAGTAACCTATAGGAACCGTCTTTAATTTCTACGCGCGCGCTTTATTTTAAAAATGCTATTTTGAAAGTATTTATTTAAACCTAAAGGTGTTCTAGGTGAAGAATTGGAGGGAGAAGAATGTTTTTGGATTTTTATTTTAGTTGAATTGAAGGAATTTTGTTCCTTGCCTACGTACCCGTTTAAGGGATCAAATCCACCGTAGTTCTCTTTCAAAAAATGTTTTTGTTTTTGTTGGTTGATTTTAAGTTTGAAAATGAATTTTAGAGAATGGAGATCGAGAGGCCTCAAGGGCATGAGATTTATGAAATTGTGAGGTTGGATTAGTAATTTGCAAAAAGGTCTAAGTATAGTTAGAATTCTTTAAGATTTTGATTAAGAAAATGAAAAGGAAAATTACAATGGGATTTTGATCCCAAGGTTTATTAGAAAATGGTTTGAGTGATATTGTTCATGTTTTTTGGAAAGTTGATTTTTCCTAAGTATGGATCCTAGGCATTCATCTAAACATACAATCCTAAACATACATCTAAACATGCATATTCTAGCTATATTTCAAGTGGTGTGTGTGTATGTGTCGGTGCTTGTGTCGGTGTACATCATTAGAGTCCATTGTCCTTATTACATCATACCCTAGATACATTCTATGGCCTCTTTGCCAAGAAATTAAAAGACATGAGGTAAAATATTACAAAAATTCCTAAGCTTTTACATGCTAAGTCTTGGTAAAACTTAAAGTGCAAGAAATTAAAGTGGAGAAAGAGATGAGATATGGAATGCTTATGATGTATGAAACATGAAACAAAAAAAGTTAGTAGCACAAGATATAAAGCAAGTCAAAGCTATCATAACCAAAAGTAAGAAAATTAACATAAGAAAAACAAGCAAAAACAAATGTGAAATAGGCCTAAAAAATCATCACCAATGCAAGGCTTGAATATGACCTATAATCCTCATACTTCAAAGGGTTTCCAAAGAATTTCAATTCAATTTTCACAAAGAGGATTAAAGGAATATACACTACCAAGCATTTAAGACAAAAATTAGGCAAATTTCACATTATTCATTCACAAACAAAACTTGGAACTCAAGGCAGTAATGACAAGTTCACAAACAGCACCAATTTTATGGATTCAAAGTCACAATTTTCGTAAAATTCATATAACAAGGTTCCACATCAAATACTCAAGATTAAGGGCCAAGATCATGCACAATTTTCACAAGAAATTATCAAAAAGTAACATAAAATCACAAGAAAACTCCACATATATTTTTATCAATTTTAACATGCAACAACTATCACAAAAATACCACAAAACTATCAAGAGATATGTATGAAACTTTTTGGAGTTTTTTAGAGAATTTTTAGACACAAACACATGTAAAATTTCACAATTTCTTAACAAAAATAGAAAGAAAATACCACACACTTTCTAACCAAGATTCAACATATGACAATGTCACAAAAATATCAAGAAAATGATTAAGAACACATAGGAATTTTTTAGGGATTTTTAAAGGCTTTTTTAGGCTAAAAAGTGCAAGAAAGTTACTAATTCTAACAAAAATAAAAAAAAAGCTTCAAATACTTTTCTCAAGTTTTAGCACAAAAAAATGTCACAAAAATGTTAGAAAAAATATTAAGAACGCATAGAAAAATTTTTAGGATTTTTCATGAAGAGATTAAATGGACAGGGGTGCAAGAATCATTTTGCGGTGTGGAAATAGCACAAAATTCAGCAAAACGAAAATGGCAGACAAAACAAAAGCCCAAGCCCAGACTTAAGAGGGAAAGAACGGGTCAAAGCAAATTGGACCGGTTCAGGAACGGGTCGGTTCAACCGAACCGGTCCAACAAGCACTAAACAACACAAGCCACTCCTTCTCTCTTTCCTCATCGTCCTCATTCTTTTCTTTTCTTCTTTCATTTCTTTCCCATTCCCACACACACAGTCACATAATCATCTTCTCCTTTCTTCATTCTTTCATCTATTCAAACAATAATTCCTACAATTCTCTTCTCCTCAAAACACTAACACACACAAACATGAACAATCTACACAAAAAGCAACATAAGCACATATCCATGGCCGAAATTCAACGCAAGGAAAGAACACATATCCATGGCCGAAATTCAACGCAAGGAAAGAAGAATTGACGGATTTACACAAGAGCCAGCAACAAAACAGATCGAATCAAAGGATTGAAGTGATGATACCTTAGAAAGAAAACGGCGAGACGAGGGACTTCGACGGAAAGCAGCGATGACAATTCCGAATCCGCAAGCTTCTTCGTTGGTCTGGACAATTCTTCTCTTCTTCTTGATCACGTCTTGTTCGAGTATTGAAGCTCAGATTCTGTCTTCTTGTTCCAATTTTCCTTGCTTCAGCTTCAAATCTGTTGTGTGA
Protein sequence

>MS.gene070872.t1

MATQPEFEHPNKAFGWAARDTSGVLSPFNFFRRETGEKDVAFKVLYCGICHSDLHFIKNEWGMSTYPLVPGHEIAGIVTEVGSKVEKFKVGDKVGVGCLVDSCRACQNCEENLENYCPKQTLTYSAKYSDGAITYGGYSDSMVADEHFVVRIPDGLPLEAAAPLLCAGITVYSPLRYFGLDKPGMNIGIVGLGGLGHLGVKFAKAFGANVTVISTSPNKEKEAIEHLGADSFLISHDQEKMQAATGTLDGIIDTVSADHTLLPLVGLLKYHGKLVMVGAPQNPMELPHIPLIMERKRRDEGLRRKAAMTIPNPQASSLVWTILLFFLITSCSSIEAQILSSCSNFPCFSFKSVV