Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068618.t1 | XP_003612978.1 | 93.4 | 361 | 16 | 1 | 1 | 353 | 1 | 361 | 5.10E-197 | 696.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068618.t1 | Q9ZRF1 | 77.0 | 356 | 74 | 1 | 6 | 353 | 4 | 359 | 1.9e-163 | 576.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068618.t1 | B7FIN8 | 93.4 | 361 | 16 | 1 | 1 | 353 | 1 | 361 | 3.7e-197 | 696.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068618.t1 | MTR_5g031250 | 93.352 | 361 | 16 | 1 | 1 | 353 | 1 | 361 | 0.0 | 665 |
| MS.gene068618.t1 | MTR_5g031230 | 79.224 | 361 | 67 | 1 | 1 | 353 | 1 | 361 | 0.0 | 584 |
| MS.gene068618.t1 | MTR_4g115300 | 78.947 | 361 | 68 | 1 | 1 | 353 | 1 | 361 | 0.0 | 579 |
| MS.gene068618.t1 | MTR_5g031390 | 78.393 | 361 | 70 | 1 | 1 | 353 | 1 | 361 | 0.0 | 569 |
| MS.gene068618.t1 | MTR_5g031310 | 77.839 | 361 | 71 | 2 | 1 | 352 | 1 | 361 | 0.0 | 566 |
| MS.gene068618.t1 | MTR_5g031190 | 77.285 | 361 | 74 | 1 | 1 | 353 | 1 | 361 | 0.0 | 562 |
| MS.gene068618.t1 | MTR_5g031210 | 76.731 | 361 | 76 | 1 | 1 | 353 | 1 | 361 | 0.0 | 558 |
| MS.gene068618.t1 | MTR_5g031305 | 77.285 | 361 | 73 | 2 | 1 | 352 | 1 | 361 | 0.0 | 557 |
| MS.gene068618.t1 | MTR_5g031300 | 76.796 | 362 | 75 | 2 | 1 | 353 | 1 | 362 | 0.0 | 556 |
| MS.gene068618.t1 | MTR_5g031180 | 78.393 | 361 | 70 | 1 | 1 | 353 | 1 | 361 | 0.0 | 545 |
| MS.gene068618.t1 | MTR_8g068190 | 76.389 | 360 | 77 | 1 | 1 | 352 | 1 | 360 | 0.0 | 540 |
| MS.gene068618.t1 | MTR_5g031360 | 75.214 | 351 | 79 | 1 | 10 | 352 | 12 | 362 | 0.0 | 538 |
| MS.gene068618.t1 | MTR_5g031250 | 92.116 | 241 | 11 | 1 | 1 | 233 | 1 | 241 | 1.25e-153 | 432 |
| MS.gene068618.t1 | MTR_8g092630 | 61.408 | 355 | 123 | 3 | 8 | 349 | 60 | 413 | 1.05e-144 | 416 |
| MS.gene068618.t1 | MTR_5g031430 | 60.290 | 345 | 129 | 1 | 14 | 350 | 14 | 358 | 1.30e-141 | 405 |
| MS.gene068618.t1 | MTR_1g025950 | 56.734 | 349 | 142 | 2 | 8 | 347 | 7 | 355 | 7.94e-130 | 376 |
| MS.gene068618.t1 | MTR_1g107425 | 51.603 | 343 | 158 | 1 | 11 | 345 | 9 | 351 | 1.70e-118 | 347 |
| MS.gene068618.t1 | MTR_2g009810 | 50.867 | 346 | 160 | 3 | 14 | 350 | 62 | 406 | 3.90e-111 | 330 |
| MS.gene068618.t1 | MTR_1g107425 | 52.650 | 283 | 125 | 2 | 11 | 285 | 9 | 290 | 8.43e-94 | 282 |
| MS.gene068618.t1 | MTR_2g009820 | 48.062 | 258 | 108 | 4 | 108 | 350 | 8 | 254 | 3.40e-65 | 207 |
| MS.gene068618.t1 | MTR_5g031290 | 78.070 | 114 | 25 | 0 | 239 | 352 | 80 | 193 | 3.27e-58 | 187 |
| MS.gene068618.t1 | MTR_5g031290 | 75.000 | 80 | 11 | 1 | 1 | 71 | 1 | 80 | 5.84e-36 | 129 |
| MS.gene068618.t1 | MTR_8g095220 | 24.014 | 279 | 176 | 7 | 25 | 270 | 68 | 343 | 5.44e-18 | 85.1 |
| MS.gene068618.t1 | MTR_8g095220 | 25.630 | 238 | 146 | 6 | 25 | 234 | 68 | 302 | 6.33e-18 | 83.6 |
| MS.gene068618.t1 | MTR_6g465010 | 25.767 | 326 | 206 | 12 | 15 | 317 | 3 | 315 | 5.36e-16 | 78.6 |
| MS.gene068618.t1 | MTR_6g466320 | 25.588 | 340 | 216 | 13 | 1 | 317 | 6 | 331 | 6.89e-16 | 78.2 |
| MS.gene068618.t1 | MTR_6g465010 | 25.588 | 340 | 216 | 13 | 1 | 317 | 6 | 331 | 6.89e-16 | 78.2 |
| MS.gene068618.t1 | MTR_5g031380 | 66.667 | 39 | 13 | 0 | 72 | 110 | 19 | 57 | 6.24e-13 | 65.1 |
| MS.gene068618.t1 | MTR_0001s0660 | 24.585 | 301 | 197 | 11 | 38 | 310 | 35 | 333 | 4.00e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068618.t1 | AT4G37990 | 70.286 | 350 | 96 | 1 | 11 | 352 | 7 | 356 | 2.42e-165 | 466 |
| MS.gene068618.t1 | AT4G37970 | 63.099 | 355 | 123 | 1 | 6 | 352 | 7 | 361 | 3.47e-161 | 456 |
| MS.gene068618.t1 | AT4G39330 | 59.610 | 359 | 137 | 1 | 1 | 351 | 1 | 359 | 1.45e-157 | 446 |
| MS.gene068618.t1 | AT4G37980 | 66.571 | 350 | 109 | 1 | 11 | 352 | 7 | 356 | 2.83e-157 | 445 |
| MS.gene068618.t1 | AT2G21890 | 59.544 | 351 | 133 | 2 | 12 | 353 | 6 | 356 | 3.60e-149 | 426 |
| MS.gene068618.t1 | AT2G21730 | 59.659 | 352 | 132 | 3 | 12 | 353 | 6 | 357 | 5.18e-148 | 422 |
| MS.gene068618.t1 | AT4G39330 | 58.140 | 301 | 118 | 1 | 1 | 293 | 1 | 301 | 1.42e-124 | 360 |
| MS.gene068618.t1 | AT4G37970 | 60.554 | 289 | 106 | 1 | 6 | 286 | 7 | 295 | 3.33e-121 | 352 |
| MS.gene068618.t1 | AT4G37980 | 66.197 | 284 | 88 | 1 | 11 | 286 | 7 | 290 | 7.62e-120 | 348 |
| MS.gene068618.t1 | AT1G72680 | 48.105 | 343 | 169 | 2 | 16 | 350 | 14 | 355 | 2.05e-105 | 313 |
| MS.gene068618.t1 | AT3G19450 | 51.156 | 346 | 161 | 1 | 11 | 348 | 9 | 354 | 5.88e-105 | 313 |
| MS.gene068618.t1 | AT4G34230 | 51.009 | 347 | 162 | 1 | 7 | 345 | 4 | 350 | 1.34e-102 | 306 |
| MS.gene068618.t1 | AT4G34230 | 50.720 | 347 | 163 | 1 | 7 | 345 | 4 | 350 | 1.16e-101 | 304 |
| MS.gene068618.t1 | AT4G37970 | 59.833 | 239 | 88 | 1 | 6 | 236 | 7 | 245 | 3.88e-96 | 286 |
| MS.gene068618.t1 | AT4G37970 | 60.338 | 237 | 86 | 1 | 6 | 234 | 7 | 243 | 6.69e-96 | 286 |
| MS.gene068618.t1 | AT5G63620 | 25.000 | 280 | 172 | 8 | 25 | 270 | 70 | 345 | 8.45e-20 | 90.5 |
| MS.gene068618.t1 | AT5G63620 | 25.000 | 280 | 172 | 8 | 25 | 270 | 70 | 345 | 8.69e-20 | 90.5 |
| MS.gene068618.t1 | AT5G63620 | 25.630 | 238 | 146 | 6 | 25 | 234 | 70 | 304 | 1.10e-19 | 89.0 |
| MS.gene068618.t1 | AT5G51970 | 24.233 | 326 | 211 | 10 | 15 | 317 | 21 | 333 | 2.13e-15 | 77.0 |
| MS.gene068618.t1 | AT5G51970 | 24.233 | 326 | 211 | 10 | 15 | 317 | 21 | 333 | 2.13e-15 | 77.0 |
Find 84 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAGTCCTCTTCGATATTT+TGG | 0.153434 | 5.1:+21482404 | MS.gene068618:CDS |
| CCCTCACATTCCTTTAATAA+TGG | 0.196862 | 5.1:+21482834 | MS.gene068618:CDS |
| TTCTTTGGATGTTCAAATTC+AGG | 0.197787 | 5.1:-21481655 | None:intergenic |
| TATCGATTTGTGATTGATAT+TGG | 0.198958 | 5.1:+21483177 | MS.gene068618:CDS |
| TATTGCTTCTTTCTCTTTGT+TGG | 0.211892 | 5.1:-21482540 | None:intergenic |
| CTATATGTTTGTGTTTGTTT+AGG | 0.221743 | 5.1:-21482242 | None:intergenic |
| AACAACTTACCCATTATTAA+AGG | 0.228051 | 5.1:-21482844 | None:intergenic |
| GCCCAACCAAATGCCTTCTT+TGG | 0.260645 | 5.1:-21481670 | None:intergenic |
| TATATGTTTGTGTTTGTTTA+GGG | 0.265623 | 5.1:-21482241 | None:intergenic |
| CCTCACATTCCTTTAATAAT+GGG | 0.310674 | 5.1:+21482835 | MS.gene068618:CDS |
| CCCCTTTCAACTTCTCTAGA+AGG | 0.321261 | 5.1:+21481719 | MS.gene068618:CDS |
| TCTTGGTGGACTTGGTCACT+TGG | 0.333930 | 5.1:+21482463 | MS.gene068618:CDS |
| ATTGCTTCTTTCTCTTTGTT+GGG | 0.338643 | 5.1:-21482539 | None:intergenic |
| GTGAAGTTTGCAAAAGCTTT+TGG | 0.362966 | 5.1:+21482488 | MS.gene068618:CDS |
| GAACATCCAAAGAAGGCATT+TGG | 0.363606 | 5.1:+21481664 | MS.gene068618:CDS |
| GCAGGGAGAAAGACGATATC+TGG | 0.389267 | 5.1:+21483015 | MS.gene068618:intron |
| GATATTTCACATCTGCTTTG+AGG | 0.391986 | 5.1:-21483158 | None:intergenic |
| CATTTAAAGTACAGTATTGC+GGG | 0.393811 | 5.1:+21481911 | MS.gene068618:CDS |
| GGGAGCTCCGGAGGCTTCTC+AGG | 0.395546 | 5.1:-21482814 | None:intergenic |
| ATAGGTATTGTTGGTCTTGG+TGG | 0.404910 | 5.1:+21482449 | MS.gene068618:CDS |
| ATTGTTGGTCTTGGTGGACT+TGG | 0.407291 | 5.1:+21482455 | MS.gene068618:CDS |
| CATCCTCTCTTACCTCTAGT+TGG | 0.407705 | 5.1:+21482751 | MS.gene068618:CDS |
| TTGTACAAAATTTAAGAACT+AGG | 0.429877 | 5.1:-21483213 | None:intergenic |
| ATATCACGGAAAACTTATAA+TGG | 0.431863 | 5.1:+21482783 | MS.gene068618:CDS |
| GATTATAGGCATGAGGTTGC+TGG | 0.437448 | 5.1:+21482095 | MS.gene068618:intron |
| ACGATATCTGGCAGTGGCAT+TGG | 0.438228 | 5.1:+21483027 | MS.gene068618:CDS |
| TCCAAAGAAGGCATTTGGTT+GGG | 0.449991 | 5.1:+21481669 | MS.gene068618:CDS |
| GTCGTGAACTTTCAGAGAAA+CGG | 0.456414 | 5.1:+21481873 | MS.gene068618:intron |
| AATATAGGTATTGTTGGTCT+TGG | 0.457645 | 5.1:+21482446 | MS.gene068618:CDS |
| GCTTCAAGTGGTAAGCCATC+AGG | 0.468059 | 5.1:-21482347 | None:intergenic |
| TCGTGAACTTTCAGAGAAAC+GGG | 0.468716 | 5.1:+21481874 | MS.gene068618:intron |
| GGTATGAATATAGGTATTGT+TGG | 0.472768 | 5.1:+21482440 | MS.gene068618:CDS |
| ATAGGCTGCGATGGGTACTT+TGG | 0.475496 | 5.1:+21482699 | MS.gene068618:intron |
| TGCTAAACACGATATAAAAC+CGG | 0.477369 | 5.1:+21483086 | MS.gene068618:CDS |
| AAAGTAAAGAAGTTCAAAGT+TGG | 0.481176 | 5.1:+21482140 | MS.gene068618:CDS |
| ATAGGTATGACTTCGATGTC+CGG | 0.491179 | 5.1:-21483105 | None:intergenic |
| GACAAGCCTGGTATGAATAT+AGG | 0.491634 | 5.1:+21482431 | MS.gene068618:CDS |
| AGCGATGGAACCATCACATA+TGG | 0.493438 | 5.1:+21482275 | MS.gene068618:CDS |
| TAAGAAATGAATCAGCTCCT+AGG | 0.495743 | 5.1:-21482568 | None:intergenic |
| ACCTTCTAGAGAAGTTGAAA+GGG | 0.496182 | 5.1:-21481720 | None:intergenic |
| CTTGGTGGACTTGGTCACTT+GGG | 0.501069 | 5.1:+21482464 | MS.gene068618:CDS |
| GCTGCTCCTCTCCTTTGTGC+TGG | 0.501431 | 5.1:+21482371 | MS.gene068618:CDS |
| TGGGCAGCAAGAGACACTTC+TGG | 0.507758 | 5.1:+21481688 | MS.gene068618:CDS |
| AAAGGAATGTGAGGGAGCTC+CGG | 0.512634 | 5.1:-21482826 | None:intergenic |
| AACCTTCTAGAGAAGTTGAA+AGG | 0.514607 | 5.1:-21481721 | None:intergenic |
| AGTTGGAGACAAAGTGGGTG+TGG | 0.517700 | 5.1:+21482157 | MS.gene068618:CDS |
| ATATCTGGCAGTGGCATTGG+AGG | 0.523014 | 5.1:+21483030 | MS.gene068618:CDS |
| TTTATAGTTCGCATTCCTGA+TGG | 0.525602 | 5.1:+21482332 | MS.gene068618:CDS |
| CGGTGCACCTGAGAAGCCTC+CGG | 0.529283 | 5.1:+21482807 | MS.gene068618:CDS |
| ATCCAAAGAAGGCATTTGGT+TGG | 0.531418 | 5.1:+21481668 | MS.gene068618:CDS |
| TGAATTTGAACATCCAAAGA+AGG | 0.532781 | 5.1:+21481657 | MS.gene068618:CDS |
| TGGAGGGTACTCTGACTCAA+TGG | 0.539173 | 5.1:+21482295 | MS.gene068618:CDS |
| CCCATTATTAAAGGAATGTG+AGG | 0.542582 | 5.1:-21482835 | None:intergenic |
| GTTGGATTATTAAAATATCA+CGG | 0.550914 | 5.1:+21482769 | MS.gene068618:CDS |
| GGACATCGAAGTCATACCTA+TGG | 0.559852 | 5.1:+21483107 | MS.gene068618:CDS |
| CACGGAAAACTTATAATGGT+CGG | 0.562740 | 5.1:+21482787 | MS.gene068618:CDS |
| GCTGCGATGGGTACTTTGGA+TGG | 0.570444 | 5.1:+21482703 | MS.gene068618:CDS |
| GCATTTAAAGTACAGTATTG+CGG | 0.588287 | 5.1:+21481910 | MS.gene068618:CDS |
| GATATATGATTATAGGCATG+AGG | 0.590572 | 5.1:+21482088 | MS.gene068618:intron |
| GCTGGTATAGTCACAGAAGT+GGG | 0.600918 | 5.1:+21482113 | MS.gene068618:CDS |
| AAAGAAGCAATAGAAAACCT+AGG | 0.602446 | 5.1:+21482551 | MS.gene068618:CDS |
| TGCTGGTATAGTCACAGAAG+TGG | 0.607495 | 5.1:+21482112 | MS.gene068618:CDS |
| TCATAACCAAGATAAAATGC+AGG | 0.607689 | 5.1:+21482595 | MS.gene068618:CDS |
| GTTCAAAGTTGGAGACAAAG+TGG | 0.616401 | 5.1:+21482151 | MS.gene068618:CDS |
| AGAGTACCCTCCATATGTGA+TGG | 0.616852 | 5.1:-21482285 | None:intergenic |
| GATGGAACCATCACATATGG+AGG | 0.621420 | 5.1:+21482278 | MS.gene068618:CDS |
| GGAATGTGAGGGAGCTCCGG+AGG | 0.622096 | 5.1:-21482823 | None:intergenic |
| TATCATTGATACAGTTTCAG+CGG | 0.623020 | 5.1:+21482726 | MS.gene068618:CDS |
| GCTGTGTTAACATAATCCAT+AGG | 0.623116 | 5.1:-21483123 | None:intergenic |
| GTAATACCAGCACAAAGGAG+AGG | 0.623289 | 5.1:-21482377 | None:intergenic |
| AATCCAACTAGAGGTAAGAG+AGG | 0.623627 | 5.1:-21482754 | None:intergenic |
| AGAAAGACGATATCTGGCAG+TGG | 0.629634 | 5.1:+21483021 | MS.gene068618:CDS |
| CCATTATTAAAGGAATGTGA+GGG | 0.639713 | 5.1:-21482834 | None:intergenic |
| TTCAAAGTTGGAGACAAAGT+GGG | 0.640553 | 5.1:+21482152 | MS.gene068618:CDS |
| GTTGGAGACAAAGTGGGTGT+GGG | 0.640763 | 5.1:+21482158 | MS.gene068618:CDS |
| AGAGGAGCAGCAGCTTCAAG+TGG | 0.642094 | 5.1:-21482359 | None:intergenic |
| TCGAGTCCAAAATATCGAAG+AGG | 0.642096 | 5.1:-21482410 | None:intergenic |
| CCTTCTAGAGAAGTTGAAAG+GGG | 0.645104 | 5.1:-21481719 | None:intergenic |
| TATAGTGCGAAATACAGCGA+TGG | 0.656053 | 5.1:+21482260 | MS.gene068618:CDS |
| TCGCGCATGCCAAAATTGTG+AGG | 0.663146 | 5.1:+21482199 | MS.gene068618:CDS |
| ACAATACCTATATTCATACC+AGG | 0.667309 | 5.1:-21482437 | None:intergenic |
| ATGGAACCATCACATATGGA+GGG | 0.675053 | 5.1:+21482279 | MS.gene068618:CDS |
| GTATTGCGGGATATGTCACT+CGG | 0.700120 | 5.1:+21481924 | MS.gene068618:CDS |
| ACACAGTAATACCAGCACAA+AGG | 0.710961 | 5.1:-21482382 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTATAATAATAATCTTAAT+TGG | + | chr5.1:21482638-21482657 | MS.gene068618:intron | 10.0% |
| !! | TAAGATTATTATTATAACTT+TGG | - | chr5.1:21482636-21482655 | None:intergenic | 10.0% |
| !!! | ATTTTGATGATATTATTTAT+TGG | + | chr5.1:21482993-21483012 | MS.gene068618:intron | 10.0% |
| !! | AATTAAAAATTCCTAAGATA+TGG | - | chr5.1:21482036-21482055 | None:intergenic | 15.0% |
| !! | TCTAATTGATATATGATTAT+AGG | + | chr5.1:21482081-21482100 | MS.gene068618:intron | 15.0% |
| !!! | ATTAATGTCAATGATTTTAT+AGG | + | chr5.1:21482681-21482700 | MS.gene068618:intron | 15.0% |
| !!! | GTTTATACATTTATTTTCAT+AGG | - | chr5.1:21482973-21482992 | None:intergenic | 15.0% |
| !!! | TTATTTTCATAGGTATAAAA+GGG | - | chr5.1:21482963-21482982 | None:intergenic | 15.0% |
| !!! | TTGACAAAATAATTATTTCT+TGG | + | chr5.1:21481847-21481866 | MS.gene068618:intron | 15.0% |
| !!! | TTTATTTTCATAGGTATAAA+AGG | - | chr5.1:21482964-21482983 | None:intergenic | 15.0% |
| !! | AAAAGATGTATAAAATGAAG+AGG | - | chr5.1:21481761-21481780 | None:intergenic | 20.0% |
| !! | CAATTAGAATAAAATTGTAG+TGG | - | chr5.1:21482069-21482088 | None:intergenic | 20.0% |
| !! | GTTGGATTATTAAAATATCA+CGG | + | chr5.1:21482769-21482788 | MS.gene068618:CDS | 20.0% |
| !! | TATATGTTTGTGTTTGTTTA+GGG | - | chr5.1:21482244-21482263 | None:intergenic | 20.0% |
| !! | TCATATGATCAAAAATGAAT+GGG | + | chr5.1:21481951-21481970 | MS.gene068618:CDS | 20.0% |
| !! | TTCATATGATCAAAAATGAA+TGG | + | chr5.1:21481950-21481969 | MS.gene068618:CDS | 20.0% |
| !!! | TATTTTAATAATCCAACTAG+AGG | - | chr5.1:21482766-21482785 | None:intergenic | 20.0% |
| ! | AAAGTAAAGAAGTTCAAAGT+TGG | + | chr5.1:21482140-21482159 | MS.gene068618:CDS | 25.0% |
| ! | AACAACTTACCCATTATTAA+AGG | - | chr5.1:21482847-21482866 | None:intergenic | 25.0% |
| ! | ACTTTAACAAACCATATCTT+AGG | + | chr5.1:21482022-21482041 | MS.gene068618:intron | 25.0% |
| ! | ATATCACGGAAAACTTATAA+TGG | + | chr5.1:21482783-21482802 | MS.gene068618:CDS | 25.0% |
| ! | CATATGATCAAAAATGAATG+GGG | + | chr5.1:21481952-21481971 | MS.gene068618:CDS | 25.0% |
| ! | CTATATGTTTGTGTTTGTTT+AGG | - | chr5.1:21482245-21482264 | None:intergenic | 25.0% |
| ! | GATGATATTATTTATTGGCA+GGG | + | chr5.1:21482998-21483017 | MS.gene068618:intron | 25.0% |
| ! | TGATGATATTATTTATTGGC+AGG | + | chr5.1:21482997-21483016 | MS.gene068618:intron | 25.0% |
| !! | TATATACCTGCATTTTATCT+TGG | - | chr5.1:21482604-21482623 | None:intergenic | 25.0% |
| !!! | TATCGATTTGTGATTGATAT+TGG | + | chr5.1:21483177-21483196 | MS.gene068618:CDS | 25.0% |
| AAAGAAGCAATAGAAAACCT+AGG | + | chr5.1:21482551-21482570 | MS.gene068618:CDS | 30.0% | |
| ACAATACCTATATTCATACC+AGG | - | chr5.1:21482440-21482459 | None:intergenic | 30.0% | |
| AGATGTATAAAATGAAGAGG+TGG | - | chr5.1:21481758-21481777 | None:intergenic | 30.0% | |
| ATTGCTTCTTTCTCTTTGTT+GGG | - | chr5.1:21482542-21482561 | None:intergenic | 30.0% | |
| CCATTATTAAAGGAATGTGA+GGG | - | chr5.1:21482837-21482856 | None:intergenic | 30.0% | |
| CCTCACATTCCTTTAATAAT+GGG | + | chr5.1:21482835-21482854 | MS.gene068618:CDS | 30.0% | |
| GATATATGATTATAGGCATG+AGG | + | chr5.1:21482088-21482107 | MS.gene068618:intron | 30.0% | |
| TATCATTGATACAGTTTCAG+CGG | + | chr5.1:21482726-21482745 | MS.gene068618:CDS | 30.0% | |
| TATTGCTTCTTTCTCTTTGT+TGG | - | chr5.1:21482543-21482562 | None:intergenic | 30.0% | |
| TCATAACCAAGATAAAATGC+AGG | + | chr5.1:21482595-21482614 | MS.gene068618:CDS | 30.0% | |
| TGAATTTGAACATCCAAAGA+AGG | + | chr5.1:21481657-21481676 | MS.gene068618:CDS | 30.0% | |
| TGCTAAACACGATATAAAAC+CGG | + | chr5.1:21483086-21483105 | MS.gene068618:CDS | 30.0% | |
| TTCTTTGGATGTTCAAATTC+AGG | - | chr5.1:21481658-21481677 | None:intergenic | 30.0% | |
| ! | AATATAGGTATTGTTGGTCT+TGG | + | chr5.1:21482446-21482465 | MS.gene068618:CDS | 30.0% |
| ! | CAAGATTTTCCTCACAATTT+TGG | - | chr5.1:21482211-21482230 | None:intergenic | 30.0% |
| ! | CATTTAAAGTACAGTATTGC+GGG | + | chr5.1:21481911-21481930 | MS.gene068618:CDS | 30.0% |
| ! | GCATTTAAAGTACAGTATTG+CGG | + | chr5.1:21481910-21481929 | MS.gene068618:CDS | 30.0% |
| ! | GGTATGAATATAGGTATTGT+TGG | + | chr5.1:21482440-21482459 | MS.gene068618:CDS | 30.0% |
| ! | TATAGTCCTCTTCGATATTT+TGG | + | chr5.1:21482404-21482423 | MS.gene068618:CDS | 30.0% |
| CACGGAAAACTTATAATGGT+CGG | + | chr5.1:21482787-21482806 | MS.gene068618:CDS | 35.0% | |
| CCCATTATTAAAGGAATGTG+AGG | - | chr5.1:21482838-21482857 | None:intergenic | 35.0% | |
| CCCTCACATTCCTTTAATAA+TGG | + | chr5.1:21482834-21482853 | MS.gene068618:CDS | 35.0% | |
| GATATTTCACATCTGCTTTG+AGG | - | chr5.1:21483161-21483180 | None:intergenic | 35.0% | |
| GATTGTGATCGATATGTTCA+CGG | + | chr5.1:21482931-21482950 | MS.gene068618:intron | 35.0% | |
| GCTGTGTTAACATAATCCAT+AGG | - | chr5.1:21483126-21483145 | None:intergenic | 35.0% | |
| GTATAAAATGAAGAGGTGGA+TGG | - | chr5.1:21481754-21481773 | None:intergenic | 35.0% | |
| TAAGAAATGAATCAGCTCCT+AGG | - | chr5.1:21482571-21482590 | None:intergenic | 35.0% | |
| TTCAAAGTTGGAGACAAAGT+GGG | + | chr5.1:21482152-21482171 | MS.gene068618:CDS | 35.0% | |
| TTTATAGTTCGCATTCCTGA+TGG | + | chr5.1:21482332-21482351 | MS.gene068618:CDS | 35.0% | |
| ! | AACCTTCTAGAGAAGTTGAA+AGG | - | chr5.1:21481724-21481743 | None:intergenic | 35.0% |
| ! | AATGATTTTATAGGCTGCGA+TGG | + | chr5.1:21482690-21482709 | MS.gene068618:intron | 35.0% |
| ! | ACCTTCTAGAGAAGTTGAAA+GGG | - | chr5.1:21481723-21481742 | None:intergenic | 35.0% |
| ! | ATGATTTTATAGGCTGCGAT+GGG | + | chr5.1:21482691-21482710 | MS.gene068618:intron | 35.0% |
| ! | GTGAAGTTTGCAAAAGCTTT+TGG | + | chr5.1:21482488-21482507 | MS.gene068618:CDS | 35.0% |
| AAATTCAAACACTAGAGCCG+CGG | - | chr5.1:21482883-21482902 | None:intergenic | 40.0% | |
| AATCCAACTAGAGGTAAGAG+AGG | - | chr5.1:21482757-21482776 | None:intergenic | 40.0% | |
| ACACAGTAATACCAGCACAA+AGG | - | chr5.1:21482385-21482404 | None:intergenic | 40.0% | |
| AGAAACGGGTGAAAAAGATG+TGG | + | chr5.1:21481888-21481907 | MS.gene068618:CDS | 40.0% | |
| ATACCTATCCACTAGTTCCT+GGG | + | chr5.1:21481982-21482001 | MS.gene068618:intron | 40.0% | |
| ATAGGTATGACTTCGATGTC+CGG | - | chr5.1:21483108-21483127 | None:intergenic | 40.0% | |
| ATGGAACCATCACATATGGA+GGG | + | chr5.1:21482279-21482298 | MS.gene068618:CDS | 40.0% | |
| GACAAGCCTGGTATGAATAT+AGG | + | chr5.1:21482431-21482450 | MS.gene068618:CDS | 40.0% | |
| GTCGTGAACTTTCAGAGAAA+CGG | + | chr5.1:21481873-21481892 | MS.gene068618:intron | 40.0% | |
| GTTCAAAGTTGGAGACAAAG+TGG | + | chr5.1:21482151-21482170 | MS.gene068618:CDS | 40.0% | |
| TAAAATGAAGAGGTGGATGG+AGG | - | chr5.1:21481751-21481770 | None:intergenic | 40.0% | |
| TATACCTATCCACTAGTTCC+TGG | + | chr5.1:21481981-21482000 | MS.gene068618:intron | 40.0% | |
| TATAGTGCGAAATACAGCGA+TGG | + | chr5.1:21482260-21482279 | MS.gene068618:CDS | 40.0% | |
| TCGAGTCCAAAATATCGAAG+AGG | - | chr5.1:21482413-21482432 | None:intergenic | 40.0% | |
| TCGTGAACTTTCAGAGAAAC+GGG | + | chr5.1:21481874-21481893 | MS.gene068618:intron | 40.0% | |
| TGTTGTGAAAAATGTTCCCG+CGG | + | chr5.1:21482863-21482882 | MS.gene068618:intron | 40.0% | |
| ! | CCTTCTAGAGAAGTTGAAAG+GGG | - | chr5.1:21481722-21481741 | None:intergenic | 40.0% |
| !! | ATAGGTATTGTTGGTCTTGG+TGG | + | chr5.1:21482449-21482468 | MS.gene068618:CDS | 40.0% |
| !! | ATCCAAAGAAGGCATTTGGT+TGG | + | chr5.1:21481668-21481687 | MS.gene068618:CDS | 40.0% |
| !! | GAACATCCAAAGAAGGCATT+TGG | + | chr5.1:21481664-21481683 | MS.gene068618:CDS | 40.0% |
| !! | TCCAAAGAAGGCATTTGGTT+GGG | + | chr5.1:21481669-21481688 | MS.gene068618:CDS | 40.0% |
| AATTCAAACACTAGAGCCGC+GGG | - | chr5.1:21482882-21482901 | None:intergenic | 45.0% | |
| AGAAAGACGATATCTGGCAG+TGG | + | chr5.1:21483021-21483040 | MS.gene068618:CDS | 45.0% | |
| AGCGATGGAACCATCACATA+TGG | + | chr5.1:21482275-21482294 | MS.gene068618:CDS | 45.0% | |
| CATCCTCTCTTACCTCTAGT+TGG | + | chr5.1:21482751-21482770 | MS.gene068618:CDS | 45.0% | |
| CCCCTTTCAACTTCTCTAGA+AGG | + | chr5.1:21481719-21481738 | MS.gene068618:CDS | 45.0% | |
| GATGGAACCATCACATATGG+AGG | + | chr5.1:21482278-21482297 | MS.gene068618:CDS | 45.0% | |
| GATTATAGGCATGAGGTTGC+TGG | + | chr5.1:21482095-21482114 | MS.gene068618:intron | 45.0% | |
| GCTGGTATAGTCACAGAAGT+GGG | + | chr5.1:21482113-21482132 | MS.gene068618:CDS | 45.0% | |
| GGACATCGAAGTCATACCTA+TGG | + | chr5.1:21483107-21483126 | MS.gene068618:CDS | 45.0% | |
| GTAATACCAGCACAAAGGAG+AGG | - | chr5.1:21482380-21482399 | None:intergenic | 45.0% | |
| GTATTGCGGGATATGTCACT+CGG | + | chr5.1:21481924-21481943 | MS.gene068618:CDS | 45.0% | |
| TGCTGGTATAGTCACAGAAG+TGG | + | chr5.1:21482112-21482131 | MS.gene068618:CDS | 45.0% | |
| ! | AGAGTACCCTCCATATGTGA+TGG | - | chr5.1:21482288-21482307 | None:intergenic | 45.0% |
| !! | ATTGTTGGTCTTGGTGGACT+TGG | + | chr5.1:21482455-21482474 | MS.gene068618:CDS | 45.0% |
| !! | TATTTTGGACTCGACAAGCC+TGG | + | chr5.1:21482419-21482438 | MS.gene068618:CDS | 45.0% |
| AAAGGAATGTGAGGGAGCTC+CGG | - | chr5.1:21482829-21482848 | None:intergenic | 50.0% | |
| ACGATATCTGGCAGTGGCAT+TGG | + | chr5.1:21483027-21483046 | MS.gene068618:CDS | 50.0% | |
| AGTTCGAAGCATACGTACCC+AGG | - | chr5.1:21482002-21482021 | None:intergenic | 50.0% | |
| AGTTGGAGACAAAGTGGGTG+TGG | + | chr5.1:21482157-21482176 | MS.gene068618:CDS | 50.0% | |
| ATAGGCTGCGATGGGTACTT+TGG | + | chr5.1:21482699-21482718 | MS.gene068618:intron | 50.0% | |
| CATACGTACCCAGGAACTAG+TGG | - | chr5.1:21481993-21482012 | None:intergenic | 50.0% | |
| GCAGGGAGAAAGACGATATC+TGG | + | chr5.1:21483015-21483034 | MS.gene068618:intron | 50.0% | |
| GCCCAACCAAATGCCTTCTT+TGG | - | chr5.1:21481673-21481692 | None:intergenic | 50.0% | |
| GCTTCAAGTGGTAAGCCATC+AGG | - | chr5.1:21482350-21482369 | None:intergenic | 50.0% | |
| GTTGGAGACAAAGTGGGTGT+GGG | + | chr5.1:21482158-21482177 | MS.gene068618:CDS | 50.0% | |
| TCGCGCATGCCAAAATTGTG+AGG | + | chr5.1:21482199-21482218 | MS.gene068618:CDS | 50.0% | |
| ! | ATATCTGGCAGTGGCATTGG+AGG | + | chr5.1:21483030-21483049 | MS.gene068618:CDS | 50.0% |
| ! | GTACCCAGGAACTAGTGGAT+AGG | - | chr5.1:21481988-21482007 | None:intergenic | 50.0% |
| !! | CTTGGTGGACTTGGTCACTT+GGG | + | chr5.1:21482464-21482483 | MS.gene068618:CDS | 50.0% |
| !! | TCTTGGTGGACTTGGTCACT+TGG | + | chr5.1:21482463-21482482 | MS.gene068618:CDS | 50.0% |
| !! | TGGAGGGTACTCTGACTCAA+TGG | + | chr5.1:21482295-21482314 | MS.gene068618:CDS | 50.0% |
| AGAGGAGCAGCAGCTTCAAG+TGG | - | chr5.1:21482362-21482381 | None:intergenic | 55.0% | |
| GCTGCGATGGGTACTTTGGA+TGG | + | chr5.1:21482703-21482722 | MS.gene068618:CDS | 55.0% | |
| TGGGCAGCAAGAGACACTTC+TGG | + | chr5.1:21481688-21481707 | MS.gene068618:CDS | 55.0% | |
| GCTGCTCCTCTCCTTTGTGC+TGG | + | chr5.1:21482371-21482390 | MS.gene068618:CDS | 60.0% | |
| CGGTGCACCTGAGAAGCCTC+CGG | + | chr5.1:21482807-21482826 | MS.gene068618:CDS | 65.0% | |
| GGAATGTGAGGGAGCTCCGG+AGG | - | chr5.1:21482826-21482845 | None:intergenic | 65.0% | |
| GGGAGCTCCGGAGGCTTCTC+AGG | - | chr5.1:21482817-21482836 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 21481643 | 21483224 | 21481643 | ID=MS.gene068618 |
| chr5.1 | mRNA | 21481643 | 21483224 | 21481643 | ID=MS.gene068618.t1;Parent=MS.gene068618 |
| chr5.1 | exon | 21481643 | 21481740 | 21481643 | ID=MS.gene068618.t1.exon1;Parent=MS.gene068618.t1 |
| chr5.1 | CDS | 21481643 | 21481740 | 21481643 | ID=cds.MS.gene068618.t1;Parent=MS.gene068618.t1 |
| chr5.1 | exon | 21481888 | 21481977 | 21481888 | ID=MS.gene068618.t1.exon2;Parent=MS.gene068618.t1 |
| chr5.1 | CDS | 21481888 | 21481977 | 21481888 | ID=cds.MS.gene068618.t1;Parent=MS.gene068618.t1 |
| chr5.1 | exon | 21482103 | 21482616 | 21482103 | ID=MS.gene068618.t1.exon3;Parent=MS.gene068618.t1 |
| chr5.1 | CDS | 21482103 | 21482616 | 21482103 | ID=cds.MS.gene068618.t1;Parent=MS.gene068618.t1 |
| chr5.1 | exon | 21482703 | 21482856 | 21482703 | ID=MS.gene068618.t1.exon4;Parent=MS.gene068618.t1 |
| chr5.1 | CDS | 21482703 | 21482856 | 21482703 | ID=cds.MS.gene068618.t1;Parent=MS.gene068618.t1 |
| chr5.1 | exon | 21483019 | 21483224 | 21483019 | ID=MS.gene068618.t1.exon5;Parent=MS.gene068618.t1 |
| chr5.1 | CDS | 21483019 | 21483224 | 21483019 | ID=cds.MS.gene068618.t1;Parent=MS.gene068618.t1 |
| Gene Sequence |
| Protein sequence |
