AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene069145


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069145.t1 MTR_5g031360 96.694 363 12 0 1 363 1 363 0.0 724
MS.gene069145.t1 MTR_5g031310 88.981 363 39 1 1 363 1 362 0.0 644
MS.gene069145.t1 MTR_5g031305 86.592 358 48 0 6 363 5 362 0.0 633
MS.gene069145.t1 MTR_5g031300 79.775 356 72 0 7 362 6 361 0.0 583
MS.gene069145.t1 MTR_5g031390 81.429 350 65 0 13 362 11 360 0.0 576
MS.gene069145.t1 MTR_4g115300 78.917 351 74 0 12 362 10 360 0.0 572
MS.gene069145.t1 MTR_5g031230 78.917 351 74 0 12 362 10 360 0.0 568
MS.gene069145.t1 MTR_5g031250 78.632 351 75 0 12 362 10 360 0.0 562
MS.gene069145.t1 MTR_5g031190 76.353 351 83 0 12 362 10 360 0.0 553
MS.gene069145.t1 MTR_5g031210 76.923 351 81 0 12 362 10 360 0.0 544
MS.gene069145.t1 MTR_8g068190 78.348 351 76 0 12 362 10 360 0.0 527
MS.gene069145.t1 MTR_5g031180 77.208 351 80 0 12 362 10 360 0.0 524
MS.gene069145.t1 MTR_8g092630 63.295 346 126 1 14 359 69 413 5.16e-152 434
MS.gene069145.t1 MTR_5g031430 60.580 345 136 0 16 360 14 358 1.38e-145 416
MS.gene069145.t1 MTR_1g025950 59.184 343 139 1 17 358 14 356 2.81e-136 392
MS.gene069145.t1 MTR_5g031250 81.034 232 44 0 12 243 10 241 2.95e-135 386
MS.gene069145.t1 MTR_1g107425 52.436 349 166 0 10 358 6 354 3.65e-125 364
MS.gene069145.t1 MTR_2g009810 53.009 349 162 2 13 360 59 406 1.07e-117 347
MS.gene069145.t1 MTR_1g107425 53.763 279 129 0 10 288 6 284 1.61e-98 294
MS.gene069145.t1 MTR_2g009820 50.628 239 115 2 125 360 16 254 1.42e-64 206
MS.gene069145.t1 MTR_5g031290 73.913 115 30 0 249 363 80 194 1.22e-52 173
MS.gene069145.t1 MTR_5g031290 78.873 71 14 1 12 81 10 80 5.57e-34 124
MS.gene069145.t1 MTR_8g095220 26.849 365 223 14 27 355 68 424 3.71e-23 100
MS.gene069145.t1 MTR_8g095220 29.583 240 142 9 27 244 68 302 1.15e-22 97.4
MS.gene069145.t1 MTR_0001s0660 26.769 325 203 11 40 333 35 355 3.23e-20 92.0
MS.gene069145.t1 MTR_5g045710 24.633 341 210 10 40 344 35 364 3.46e-16 79.3
MS.gene069145.t1 MTR_3g089977 22.767 347 233 10 41 356 37 379 4.16e-15 76.3
MS.gene069145.t1 MTR_6g465010 26.906 223 147 6 17 235 3 213 5.89e-15 75.5
MS.gene069145.t1 MTR_6g466320 26.906 223 147 6 17 235 19 229 6.05e-15 75.5
MS.gene069145.t1 MTR_6g465010 26.906 223 147 6 17 235 19 229 6.05e-15 75.5
MS.gene069145.t1 MTR_3g089940 22.321 336 229 8 41 346 37 370 1.26e-14 74.7
MS.gene069145.t1 MTR_3g089940 22.321 336 229 8 41 346 37 370 1.33e-14 74.7
MS.gene069145.t1 MTR_3g089970 22.024 336 230 7 41 346 38 371 1.04e-13 72.0
MS.gene069145.t1 MTR_7g068320 25.146 342 214 11 41 345 48 384 1.92e-13 71.2
MS.gene069145.t1 MTR_3g089940 24.138 232 158 3 41 255 37 267 4.17e-13 70.1
MS.gene069145.t1 MTR_3g089940 24.138 232 158 3 41 255 37 267 4.79e-13 69.7
MS.gene069145.t1 MTR_3g099460 26.129 310 197 10 41 321 37 343 7.28e-13 69.7
MS.gene069145.t1 MTR_3g099460 26.129 310 197 10 41 321 44 350 8.51e-13 69.3
MS.gene069145.t1 MTR_5g087710 24.058 345 214 11 41 346 46 381 1.37e-12 68.6
MS.gene069145.t1 MTR_3g079180 26.174 298 188 11 40 309 40 333 1.64e-12 68.6
MS.gene069145.t1 MTR_1g069430 26.032 315 202 8 41 329 36 345 1.88e-12 68.2
MS.gene069145.t1 MTR_7g068330 25.731 342 211 12 41 345 41 376 3.15e-12 67.8
MS.gene069145.t1 MTR_5g031380 60.465 43 17 0 82 124 19 61 5.44e-12 62.4
MS.gene069145.t1 MTR_7g099040 24.367 316 208 8 40 329 37 347 1.64e-11 65.5
MS.gene069145.t1 MTR_3g099460 31.034 145 82 4 41 168 44 187 3.90e-11 63.9
MS.gene069145.t1 MTR_3g099460 31.034 145 82 4 41 168 37 180 3.91e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene069145.t1 AT4G37980 69.774 354 107 0 10 363 4 357 2.71e-173 486
MS.gene069145.t1 AT4G37990 70.339 354 105 0 10 363 4 357 1.15e-171 482
MS.gene069145.t1 AT4G37970 64.756 349 123 0 14 362 13 361 5.20e-167 471
MS.gene069145.t1 AT4G39330 60.571 350 138 0 12 361 10 359 1.08e-158 449
MS.gene069145.t1 AT2G21730 59.437 355 142 2 9 361 1 355 1.44e-151 432
MS.gene069145.t1 AT2G21890 58.475 354 146 1 9 361 1 354 5.34e-151 431
MS.gene069145.t1 AT4G37980 70.035 287 86 0 10 296 4 290 2.62e-132 380
MS.gene069145.t1 AT4G37970 63.251 283 104 0 14 296 13 295 7.86e-128 369
MS.gene069145.t1 AT4G39330 59.184 294 120 0 12 305 10 303 4.57e-126 365
MS.gene069145.t1 AT3G19450 53.757 346 160 0 13 358 9 354 1.13e-117 345
MS.gene069145.t1 AT1G72680 50.729 343 168 1 18 360 14 355 2.18e-113 334
MS.gene069145.t1 AT4G34230 51.445 346 168 0 13 358 8 353 1.52e-106 317
MS.gene069145.t1 AT4G34230 51.156 346 169 0 13 358 8 353 9.84e-106 315
MS.gene069145.t1 AT4G37970 62.821 234 87 0 14 247 13 246 2.67e-103 305
MS.gene069145.t1 AT4G37970 63.203 231 85 0 14 244 13 243 1.54e-102 303
MS.gene069145.t1 AT5G63620 27.143 280 174 8 27 280 70 345 2.02e-24 103
MS.gene069145.t1 AT5G63620 24.931 361 235 10 27 355 70 426 2.04e-24 103
MS.gene069145.t1 AT5G63620 28.870 239 145 7 27 244 70 304 1.66e-23 99.8
MS.gene069145.t1 AT1G64710 27.139 339 210 13 41 345 13 348 5.35e-19 87.4
MS.gene069145.t1 AT1G64710 27.139 339 210 13 41 345 36 371 6.68e-19 87.4
MS.gene069145.t1 AT5G43940 26.225 347 217 10 41 354 48 388 1.19e-18 87.0
MS.gene069145.t1 AT5G43940 26.225 347 217 10 41 354 36 376 1.29e-18 86.7
MS.gene069145.t1 AT1G22430 27.273 297 185 9 41 309 42 335 1.29e-18 86.7
MS.gene069145.t1 AT1G22430 27.273 297 185 9 41 309 42 335 1.29e-18 86.7
MS.gene069145.t1 AT1G22440 23.768 345 216 13 41 346 40 376 8.52e-17 81.3
MS.gene069145.t1 AT1G32780 26.039 361 222 12 41 360 37 393 9.91e-17 81.3
MS.gene069145.t1 AT5G51970 25.287 261 174 6 32 280 34 285 4.16e-16 79.3
MS.gene069145.t1 AT5G51970 25.287 261 174 6 32 280 34 285 4.16e-16 79.3
MS.gene069145.t1 AT1G22430 26.633 199 127 5 41 221 42 239 4.67e-15 75.5
MS.gene069145.t1 AT1G22430 26.633 199 127 5 41 221 42 239 7.10e-15 74.7
MS.gene069145.t1 AT1G22430 26.633 199 127 5 41 221 42 239 7.10e-15 74.7
MS.gene069145.t1 AT4G22110 24.269 342 216 14 41 345 43 378 1.65e-14 74.7
MS.gene069145.t1 AT4G22110 24.269 342 216 14 41 345 43 378 1.65e-14 74.7
MS.gene069145.t1 AT1G77120 22.899 345 235 9 41 356 36 378 5.81e-14 72.8
MS.gene069145.t1 AT5G42250 24.148 352 225 13 41 356 45 390 6.16e-13 69.7

Find 95 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAATGTTTGAGTATATT+TGG 0.100274 5.3:+20362804 None:intergenic
TCAATAGCTGGAAGTTTAAT+TGG 0.184530 5.3:-20362073 MS.gene069145:CDS
TATAGTCCTCTTCGACATTT+TGG 0.197168 5.3:-20362643 MS.gene069145:CDS
TATCGATTCGTGATTGATAT+TGG 0.245698 5.3:-20361923 MS.gene069145:CDS
CCCCTTTCCATTTCTTTAGA+AGG 0.260521 5.3:-20363943 MS.gene069145:intron
TTGAATGTTTGAGTATATTT+GGG 0.265617 5.3:+20362805 None:intergenic
GTGAAATTTGCTAAAGCTTT+TGG 0.271062 5.3:-20362559 MS.gene069145:CDS
ATTGGTTTATTGAAATCTAA+TGG 0.271827 5.3:-20362273 MS.gene069145:CDS
CCTGATAGCTTACCTCTTGA+TGG 0.285941 5.3:-20362700 MS.gene069145:CDS
AATTAGTACATCGCCTAAAA+AGG 0.289281 5.3:-20362521 MS.gene069145:CDS
TCTTGGTGGACTTGGTCATA+TGG 0.309264 5.3:-20362584 MS.gene069145:CDS
GCCCATCCAAAGGCCTTCTT+AGG 0.354227 5.3:+20363992 None:intergenic
TTTAGGCGATGTACTAATTA+CGG 0.366491 5.3:+20362525 None:intergenic
GCCGGTCCTCTTCTTTGCGC+TGG 0.367778 5.3:-20362676 MS.gene069145:CDS
AAGTTTAATTGGAGGGATAA+AGG 0.373525 5.3:-20362062 MS.gene069145:CDS
ATCCTGCAATGTTAAGGGCT+TGG 0.375038 5.3:+20361887 None:intergenic
CATCAAGACTTCAGGGAAAC+AGG 0.379283 5.3:-20363317 MS.gene069145:intron
AAACCAATCAATGGTAAAAC+AGG 0.382671 5.3:+20362288 None:intergenic
GTGTTTCCTAAGAAGGCCTT+TGG 0.389768 5.3:-20363998 MS.gene069145:CDS
AAGTGAACCTTCTAAAGAAA+TGG 0.391377 5.3:+20363936 None:intergenic
AAAACATACCCCGGGACTAA+TGG 0.397804 5.3:+20363203 None:intergenic
GTTGTTGGTCTTGGTGGACT+TGG 0.406204 5.3:-20362592 MS.gene069145:CDS
CCATCAAGAGGTAAGCTATC+AGG 0.415030 5.3:+20362700 None:intergenic
AAATGTACCTGCATCTGATC+TGG 0.416120 5.3:+20362445 None:intergenic
ATAGGAGTTGTTGGTCTTGG+TGG 0.419786 5.3:-20362598 MS.gene069145:CDS
AAATACAGGCATGAACTTGC+GGG 0.421578 5.3:-20362952 MS.gene069145:intron
CGCGATGGCACCATCACCTA+TGG 0.430946 5.3:-20362772 MS.gene069145:CDS
TTCACATTATGCAGAATGAA+TGG 0.433959 5.3:-20363241 MS.gene069145:CDS
CATTCAAGGTGTTGTATTGT+GGG 0.442854 5.3:-20363280 MS.gene069145:CDS
TGAGAAAGATGTAGCATTCA+AGG 0.455978 5.3:-20363294 MS.gene069145:CDS
AAAGTAGAAAAGTTCAAAGT+TGG 0.457605 5.3:-20362907 MS.gene069145:CDS
CAAAGTAGGGGTGGGATACA+TGG 0.457657 5.3:-20362881 MS.gene069145:CDS
TCACATTATGCAGAATGAAT+GGG 0.468998 5.3:-20363240 MS.gene069145:CDS
TTCTACTTTGCTTCCAACCT+CGG 0.470004 5.3:+20362921 None:intergenic
ACTAGTAGTGTTTCCTAAGA+AGG 0.473171 5.3:-20364005 MS.gene069145:CDS
GGTATGAATATAGGAGTTGT+TGG 0.473313 5.3:-20362607 MS.gene069145:CDS
AATATAGGAGTTGTTGGTCT+TGG 0.479644 5.3:-20362601 MS.gene069145:CDS
AAATATACTCAAACATTCAA+TGG 0.483631 5.3:-20362802 MS.gene069145:CDS
AGGCCTTTGGATGGGCAGCT+AGG 0.486006 5.3:-20363985 MS.gene069145:CDS
CCTCCAAGTAAAGAAAATAC+AGG 0.487127 5.3:+20362207 None:intergenic
GATTTCAATAAACCAATCAA+TGG 0.487235 5.3:+20362279 None:intergenic
CAATGTAACTCCTGAGATTG+AGG 0.489775 5.3:-20362005 MS.gene069145:CDS
TGGAGGTTTCTCCGACTCAA+TGG 0.497539 5.3:-20362752 MS.gene069145:CDS
TCCTAAGAAGGCCTTTGGAT+GGG 0.497721 5.3:-20363993 MS.gene069145:CDS
GGCCTTTGGATGGGCAGCTA+GGG 0.497825 5.3:-20363984 MS.gene069145:CDS
GTAGGGAGAAAGTCAATAGC+TGG 0.498727 5.3:-20362085 MS.gene069145:intron
AACCACCTATCCATTAGTCC+CGG 0.500566 5.3:-20363213 MS.gene069145:CDS
GACAAGCCTGGTATGAATAT+AGG 0.503872 5.3:-20362616 MS.gene069145:CDS
ATAGGAACAACCTCAATCTC+AGG 0.503943 5.3:+20361995 None:intergenic
AACCTTCTAAAGAAATGGAA+AGG 0.507463 5.3:+20363941 None:intergenic
TGGGCAGCTAGGGACTCTTC+CGG 0.515925 5.3:-20363974 MS.gene069145:CDS
GCAATGGAGCGTCTTGCTAA+AGG 0.517863 5.3:-20361956 MS.gene069145:CDS
AGCTTACCTCTTGATGGTGC+CGG 0.518846 5.3:-20362694 MS.gene069145:CDS
GCATTCAAGGTGTTGTATTG+TGG 0.522756 5.3:-20363281 MS.gene069145:CDS
ACCTTCTAAAGAAATGGAAA+GGG 0.523495 5.3:+20363942 None:intergenic
TTCAAAGTTGGAGACAAAGT+AGG 0.535111 5.3:-20362895 MS.gene069145:CDS
ACCACCTATCCATTAGTCCC+GGG 0.540962 5.3:-20363212 MS.gene069145:CDS
TCAAAGTTGGAGACAAAGTA+GGG 0.541880 5.3:-20362894 MS.gene069145:CDS
TAAATACAGGCATGAACTTG+CGG 0.543826 5.3:-20362953 MS.gene069145:intron
GAAAATACAGGAAGCTCTAG+AGG 0.546279 5.3:+20362219 None:intergenic
TTCCTAAGAAGGCCTTTGGA+TGG 0.547584 5.3:-20363994 MS.gene069145:CDS
TCCAGCGCAAAGAAGAGGAC+CGG 0.554636 5.3:+20362675 None:intergenic
GTGACTCCAGCGCAAAGAAG+AGG 0.566494 5.3:+20362670 None:intergenic
TAGCTGGAAGTTTAATTGGA+GGG 0.567406 5.3:-20362069 MS.gene069145:CDS
GTCCCTAGCTGCCCATCCAA+AGG 0.583346 5.3:+20363982 None:intergenic
GCTGCAACGAGTACTTTGAA+TGG 0.585867 5.3:-20362339 MS.gene069145:CDS
ATCTAATGGAAAGCTTGTAA+TGG 0.587781 5.3:-20362259 MS.gene069145:CDS
CGATTATGTCAACACAGCAA+TGG 0.588395 5.3:-20361972 MS.gene069145:CDS
ATAGCTGGAAGTTTAATTGG+AGG 0.588996 5.3:-20362070 MS.gene069145:CDS
CTCATCTGCAACCATTGAGT+CGG 0.590003 5.3:+20362741 None:intergenic
AGTTGGAGACAAAGTAGGGG+TGG 0.592211 5.3:-20362890 MS.gene069145:CDS
AAGGAAGCAATAGAACACTT+AGG 0.595080 5.3:-20362496 MS.gene069145:CDS
CCGCGATCCAGATCAGATGC+AGG 0.596450 5.3:-20362452 MS.gene069145:intron
CACATTATGCAGAATGAATG+GGG 0.597941 5.3:-20363239 MS.gene069145:CDS
GGAGAAACCTCCATAGGTGA+TGG 0.604248 5.3:+20362762 None:intergenic
GCGGGTATAGTAACCGAGGT+TGG 0.608625 5.3:-20362934 MS.gene069145:CDS
TTCAATGGTAAGTATCGCGA+TGG 0.612763 5.3:-20362787 MS.gene069145:CDS
GTTGGAGACAAAGTAGGGGT+GGG 0.613247 5.3:-20362889 MS.gene069145:CDS
ATACCCCGGGACTAATGGAT+AGG 0.615005 5.3:+20363208 None:intergenic
AATGGAAAGCTTGTAATGGT+TGG 0.618001 5.3:-20362255 MS.gene069145:CDS
CCCCGGGACTAATGGATAGG+TGG 0.620100 5.3:+20363211 None:intergenic
TGAATGTTTGAGTATATTTG+GGG 0.623863 5.3:+20362806 None:intergenic
ATTCATTCTGCATAATGTGA+AGG 0.626134 5.3:+20363243 None:intergenic
CCTTCTAAAGAAATGGAAAG+GGG 0.632604 5.3:+20363943 None:intergenic
TCGAGTCCAAAATGTCGAAG+AGG 0.639224 5.3:+20362637 None:intergenic
AGAGGACCGGCACCATCAAG+AGG 0.643577 5.3:+20362688 None:intergenic
TGAGTCGGAGAAACCTCCAT+AGG 0.648832 5.3:+20362756 None:intergenic
GCTGTGTTGACATAATCGAT+AGG 0.651012 5.3:+20361977 None:intergenic
ATGGAAAGGGGATAGAACAC+CGG 0.658681 5.3:+20363955 None:intergenic
ACAACTCCTATATTCATACC+AGG 0.664201 5.3:+20362610 None:intergenic
GATGGCACCATCACCTATGG+AGG 0.673821 5.3:-20362769 MS.gene069145:CDS
CCACCTATCCATTAGTCCCG+GGG 0.685161 5.3:-20363211 MS.gene069145:intron
CCTGCATCTGATCTGGATCG+CGG 0.694160 5.3:+20362452 None:intergenic
CAAAGTTGGAGACAAAGTAG+GGG 0.721896 5.3:-20362893 MS.gene069145:CDS
ACTTGCGGGTATAGTAACCG+AGG 0.754285 5.3:-20362938 MS.gene069145:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATAATTGATAAAGTA+AGG + chr5.3:20362868-20362887 None:intergenic 10.0%
!! TAAAATAATTGATAAAGTAA+GGG + chr5.3:20362867-20362886 None:intergenic 10.0%
!! ACATTTCATTTGATTAATTT+CGG - chr5.3:20363495-20363514 MS.gene069145:intron 15.0%
!! TAAACTATAATAGAAGTTAA+AGG + chr5.3:20362751-20362770 None:intergenic 15.0%
!! TATTAACAAGTTAAAATAAC+AGG - chr5.3:20362318-20362337 MS.gene069145:CDS 15.0%
!!! AAATTTGTGTTAGTTTTATT+TGG - chr5.3:20362146-20362165 MS.gene069145:intron 15.0%
!!! CAATTGTATATACTATTTTT+TGG + chr5.3:20362234-20362253 None:intergenic 15.0%
!! AAATATACTCAAACATTCAA+TGG - chr5.3:20363121-20363140 MS.gene069145:intron 20.0%
!! AATATTGTACAACATTTCAT+AGG - chr5.3:20363562-20363581 MS.gene069145:intron 20.0%
!! AATGTATTAAATTAGTGAAG+AGG + chr5.3:20362022-20362041 None:intergenic 20.0%
!! ATAACTGATGTAATAAATAC+AGG - chr5.3:20362957-20362976 MS.gene069145:intron 20.0%
!! ATTGAATGTTTGAGTATATT+TGG + chr5.3:20363122-20363141 None:intergenic 20.0%
!! GGTATAACTCATAAAAATTA+CGG + chr5.3:20362846-20362865 None:intergenic 20.0%
!! TGATGAGTAAAATAAAATGT+TGG + chr5.3:20362266-20362285 None:intergenic 20.0%
!! TTGAATGTTTGAGTATATTT+GGG + chr5.3:20363121-20363140 None:intergenic 20.0%
!! TTGTATTAATTTCGCATTAT+TGG - chr5.3:20363816-20363835 MS.gene069145:intron 20.0%
!!! AACTATTCTAAAGAATGAAT+TGG - chr5.3:20362516-20362535 MS.gene069145:CDS 20.0%
!!! ATTGGTTTATTGAAATCTAA+TGG - chr5.3:20363650-20363669 MS.gene069145:intron 20.0%
!!! TACCTTTCTTTGAAATTAAA+GGG + chr5.3:20362084-20362103 None:intergenic 20.0%
!!! TTACCTTTCTTTGAAATTAA+AGG + chr5.3:20362085-20362104 None:intergenic 20.0%
! AAAGTAGAAAAGTTCAAAGT+TGG - chr5.3:20363016-20363035 MS.gene069145:intron 25.0%
! ATTAATTTCGCATTATTGGT+AGG - chr5.3:20363820-20363839 MS.gene069145:intron 25.0%
! ATTCAAAGAATGAATTGGAT+GGG - chr5.3:20362422-20362441 MS.gene069145:intron 25.0%
! CAACTATTCAAAGAATGAAT+TGG - chr5.3:20362417-20362436 MS.gene069145:intron 25.0%
! GATTTCAATAAACCAATCAA+TGG + chr5.3:20363647-20363666 None:intergenic 25.0%
! TAGAAAATAACTGCTCAATT+TGG - chr5.3:20362932-20362951 MS.gene069145:CDS 25.0%
! TATTCAAAGAATGAATTGGA+TGG - chr5.3:20362421-20362440 MS.gene069145:intron 25.0%
! TGAATGTTTGAGTATATTTG+GGG + chr5.3:20363120-20363139 None:intergenic 25.0%
! TGACAATTAAAAAGAAACGA+CGG + chr5.3:20362776-20362795 None:intergenic 25.0%
! TTAATTTCGCATTATTGGTA+GGG - chr5.3:20363821-20363840 MS.gene069145:intron 25.0%
!! ATTCTAAAGAATGAATTGGA+TGG - chr5.3:20362520-20362539 MS.gene069145:CDS 25.0%
!! TTCCCTTTAATTTCAAAGAA+AGG - chr5.3:20362079-20362098 MS.gene069145:CDS 25.0%
!! TTCTAAAGAATGAATTGGAT+GGG - chr5.3:20362521-20362540 MS.gene069145:CDS 25.0%
!!! AAGCTTTTTAAAGTACATCT+CGG - chr5.3:20362288-20362307 MS.gene069145:CDS 25.0%
AAACCAATCAATGGTAAAAC+AGG + chr5.3:20363638-20363657 None:intergenic 30.0%
AAGTTTAATTGGAGGGATAA+AGG - chr5.3:20363861-20363880 MS.gene069145:intron 30.0%
AATTAGTACATCGCCTAAAA+AGG - chr5.3:20363402-20363421 MS.gene069145:intron 30.0%
ATCTAATGGAAAGCTTGTAA+TGG - chr5.3:20363664-20363683 MS.gene069145:intron 30.0%
ATTCATTCTGCATAATGTGA+AGG + chr5.3:20362683-20362702 None:intergenic 30.0%
GATGTTTACATCTATGTTCT+TGG - chr5.3:20362470-20362489 MS.gene069145:CDS 30.0%
TCAATAGCTGGAAGTTTAAT+TGG - chr5.3:20363850-20363869 MS.gene069145:intron 30.0%
TCACATTATGCAGAATGAAT+GGG - chr5.3:20362683-20362702 MS.gene069145:CDS 30.0%
TGTTCTTGGCTAACTAATTA+TGG - chr5.3:20362581-20362600 MS.gene069145:CDS 30.0%
TTCACATTATGCAGAATGAA+TGG - chr5.3:20362682-20362701 MS.gene069145:CDS 30.0%
TTTAGGCGATGTACTAATTA+CGG + chr5.3:20363401-20363420 None:intergenic 30.0%
! AACCTTCTAAAGAAATGGAA+AGG + chr5.3:20361985-20362004 None:intergenic 30.0%
! AAGTGAACCTTCTAAAGAAA+TGG + chr5.3:20361990-20362009 None:intergenic 30.0%
! ACCTTCTAAAGAAATGGAAA+GGG + chr5.3:20361984-20362003 None:intergenic 30.0%
! ATTGCTTCCTTTTCCTTTTT+AGG + chr5.3:20363418-20363437 None:intergenic 30.0%
! CTTCCTGTATTTTCTTTACT+TGG - chr5.3:20363713-20363732 MS.gene069145:intron 30.0%
!! TATCGATTCGTGATTGATAT+TGG - chr5.3:20364000-20364019 MS.gene069145:CDS 30.0%
!!! AGCTTTTTAAAGTACATCTC+GGG - chr5.3:20362289-20362308 MS.gene069145:CDS 30.0%
!!! GTGAAATTTGCTAAAGCTTT+TGG - chr5.3:20363364-20363383 MS.gene069145:intron 30.0%
AAGGAAGCAATAGAACACTT+AGG - chr5.3:20363427-20363446 MS.gene069145:intron 35.0%
AATGGAAAGCTTGTAATGGT+TGG - chr5.3:20363668-20363687 MS.gene069145:intron 35.0%
ACAACTCCTATATTCATACC+AGG + chr5.3:20363316-20363335 None:intergenic 35.0%
ACTAGTAGTGTTTCCTAAGA+AGG - chr5.3:20361918-20361937 MS.gene069145:CDS 35.0%
ATAGCTGGAAGTTTAATTGG+AGG - chr5.3:20363853-20363872 MS.gene069145:intron 35.0%
CACATTATGCAGAATGAATG+GGG - chr5.3:20362684-20362703 MS.gene069145:CDS 35.0%
CCTCCAAGTAAAGAAAATAC+AGG + chr5.3:20363719-20363738 None:intergenic 35.0%
GGTATGAATATAGGAGTTGT+TGG - chr5.3:20363316-20363335 MS.gene069145:intron 35.0%
TAAATACAGGCATGAACTTG+CGG - chr5.3:20362970-20362989 MS.gene069145:intron 35.0%
TACATCGCCTAAAAAGGAAA+AGG - chr5.3:20363408-20363427 MS.gene069145:intron 35.0%
TAGCTGGAAGTTTAATTGGA+GGG - chr5.3:20363854-20363873 MS.gene069145:intron 35.0%
TCAAAGTTGGAGACAAAGTA+GGG - chr5.3:20363029-20363048 MS.gene069145:intron 35.0%
TGAGAAAGATGTAGCATTCA+AGG - chr5.3:20362629-20362648 MS.gene069145:CDS 35.0%
TTCAAAGTTGGAGACAAAGT+AGG - chr5.3:20363028-20363047 MS.gene069145:intron 35.0%
! AATATAGGAGTTGTTGGTCT+TGG - chr5.3:20363322-20363341 MS.gene069145:intron 35.0%
! CATCCTGTTTTACCATTGAT+TGG - chr5.3:20363632-20363651 MS.gene069145:intron 35.0%
! CCTGTATTTTCTTTACTTGG+AGG - chr5.3:20363716-20363735 MS.gene069145:intron 35.0%
! CCTTCTAAAGAAATGGAAAG+GGG + chr5.3:20361983-20362002 None:intergenic 35.0%
! TATAGTCCTCTTCGACATTT+TGG - chr5.3:20363280-20363299 MS.gene069145:CDS 35.0%
!! CATTCAAGGTGTTGTATTGT+GGG - chr5.3:20362643-20362662 MS.gene069145:CDS 35.0%
AAATACAGGCATGAACTTGC+GGG - chr5.3:20362971-20362990 MS.gene069145:intron 40.0%
AAATGTACCTGCATCTGATC+TGG + chr5.3:20363481-20363500 None:intergenic 40.0%
ATAGGAACAACCTCAATCTC+AGG + chr5.3:20363931-20363950 None:intergenic 40.0%
CAAAGTTGGAGACAAAGTAG+GGG - chr5.3:20363030-20363049 MS.gene069145:intron 40.0%
CAATGTAACTCCTGAGATTG+AGG - chr5.3:20363918-20363937 MS.gene069145:intron 40.0%
CCCCTTTCCATTTCTTTAGA+AGG - chr5.3:20361980-20361999 MS.gene069145:CDS 40.0%
CGATTATGTCAACACAGCAA+TGG - chr5.3:20363951-20363970 MS.gene069145:CDS 40.0%
GACAAGCCTGGTATGAATAT+AGG - chr5.3:20363307-20363326 MS.gene069145:intron 40.0%
TATGGTGCATCAAGACTTCA+GGG - chr5.3:20362599-20362618 MS.gene069145:CDS 40.0%
TTATGGTGCATCAAGACTTC+AGG - chr5.3:20362598-20362617 MS.gene069145:CDS 40.0%
TTCTACTTTGCTTCCAACCT+CGG + chr5.3:20363005-20363024 None:intergenic 40.0%
! GAAAATACAGGAAGCTCTAG+AGG + chr5.3:20363707-20363726 None:intergenic 40.0%
! GCTGTGTTGACATAATCGAT+AGG + chr5.3:20363949-20363968 None:intergenic 40.0%
! TTCAATGGTAAGTATCGCGA+TGG - chr5.3:20363136-20363155 MS.gene069145:intron 40.0%
!! AAGGTGTTGAAAACATACCC+CGG + chr5.3:20362732-20362751 None:intergenic 40.0%
!! GCATTCAAGGTGTTGTATTG+TGG - chr5.3:20362642-20362661 MS.gene069145:CDS 40.0%
AAAACATACCCCGGGACTAA+TGG + chr5.3:20362723-20362742 None:intergenic 45.0%
AACCACCTATCCATTAGTCC+CGG - chr5.3:20362710-20362729 MS.gene069145:CDS 45.0%
ATGGAAAGGGGATAGAACAC+CGG + chr5.3:20361971-20361990 None:intergenic 45.0%
CATCAAGACTTCAGGGAAAC+AGG - chr5.3:20362606-20362625 MS.gene069145:CDS 45.0%
CCATCAAGAGGTAAGCTATC+AGG + chr5.3:20363226-20363245 None:intergenic 45.0%
CCTGATAGCTTACCTCTTGA+TGG - chr5.3:20363223-20363242 MS.gene069145:CDS 45.0%
CTCATCTGCAACCATTGAGT+CGG + chr5.3:20363185-20363204 None:intergenic 45.0%
GCTGCAACGAGTACTTTGAA+TGG - chr5.3:20363584-20363603 MS.gene069145:intron 45.0%
GTAGGGAGAAAGTCAATAGC+TGG - chr5.3:20363838-20363857 MS.gene069145:intron 45.0%
GTGTTTCCTAAGAAGGCCTT+TGG - chr5.3:20361925-20361944 MS.gene069145:CDS 45.0%
TCCTAAGAAGGCCTTTGGAT+GGG - chr5.3:20361930-20361949 MS.gene069145:CDS 45.0%
TCGAGTCCAAAATGTCGAAG+AGG + chr5.3:20363289-20363308 None:intergenic 45.0%
TTCCTAAGAAGGCCTTTGGA+TGG - chr5.3:20361929-20361948 MS.gene069145:CDS 45.0%
!! AGGTGTTGAAAACATACCCC+GGG + chr5.3:20362731-20362750 None:intergenic 45.0%
!! ATAGGAGTTGTTGGTCTTGG+TGG - chr5.3:20363325-20363344 MS.gene069145:intron 45.0%
!! TCTTGGTGGACTTGGTCATA+TGG - chr5.3:20363339-20363358 MS.gene069145:intron 45.0%
ACCACCTATCCATTAGTCCC+GGG - chr5.3:20362711-20362730 MS.gene069145:CDS 50.0%
ACTTGCGGGTATAGTAACCG+AGG - chr5.3:20362985-20363004 MS.gene069145:intron 50.0%
AGTTGGAGACAAAGTAGGGG+TGG - chr5.3:20363033-20363052 MS.gene069145:intron 50.0%
CAAAGTAGGGGTGGGATACA+TGG - chr5.3:20363042-20363061 MS.gene069145:intron 50.0%
GGAGAAACCTCCATAGGTGA+TGG + chr5.3:20363164-20363183 None:intergenic 50.0%
GTTGGAGACAAAGTAGGGGT+GGG - chr5.3:20363034-20363053 MS.gene069145:intron 50.0%
TGAGTCGGAGAAACCTCCAT+AGG + chr5.3:20363170-20363189 None:intergenic 50.0%
TGGAGGTTTCTCCGACTCAA+TGG - chr5.3:20363171-20363190 MS.gene069145:intron 50.0%
! ATACCCCGGGACTAATGGAT+AGG + chr5.3:20362718-20362737 None:intergenic 50.0%
! CATTTTGGACTCGACAAGCC+TGG - chr5.3:20363295-20363314 MS.gene069145:CDS 50.0%
! GCAATGGAGCGTCTTGCTAA+AGG - chr5.3:20363967-20363986 MS.gene069145:CDS 50.0%
!! AGCTTACCTCTTGATGGTGC+CGG - chr5.3:20363229-20363248 MS.gene069145:CDS 50.0%
!! GTTGTTGGTCTTGGTGGACT+TGG - chr5.3:20363331-20363350 MS.gene069145:intron 50.0%
CCACCTATCCATTAGTCCCG+GGG - chr5.3:20362712-20362731 MS.gene069145:CDS 55.0%
CCTGCATCTGATCTGGATCG+CGG + chr5.3:20363474-20363493 None:intergenic 55.0%
GATGGCACCATCACCTATGG+AGG - chr5.3:20363154-20363173 MS.gene069145:intron 55.0%
GCCCATCCAAAGGCCTTCTT+AGG + chr5.3:20361934-20361953 None:intergenic 55.0%
GCGGGTATAGTAACCGAGGT+TGG - chr5.3:20362989-20363008 MS.gene069145:intron 55.0%
GTGACTCCAGCGCAAAGAAG+AGG + chr5.3:20363256-20363275 None:intergenic 55.0%
TCCAGCGCAAAGAAGAGGAC+CGG + chr5.3:20363251-20363270 None:intergenic 55.0%
AGAGGACCGGCACCATCAAG+AGG + chr5.3:20363238-20363257 None:intergenic 60.0%
AGGCCTTTGGATGGGCAGCT+AGG - chr5.3:20361938-20361957 MS.gene069145:CDS 60.0%
CCGCGATCCAGATCAGATGC+AGG - chr5.3:20363471-20363490 MS.gene069145:intron 60.0%
CGCGATGGCACCATCACCTA+TGG - chr5.3:20363151-20363170 MS.gene069145:intron 60.0%
GGCCTTTGGATGGGCAGCTA+GGG - chr5.3:20361939-20361958 MS.gene069145:CDS 60.0%
GTCCCTAGCTGCCCATCCAA+AGG + chr5.3:20361944-20361963 None:intergenic 60.0%
TGGGCAGCTAGGGACTCTTC+CGG - chr5.3:20361949-20361968 MS.gene069145:CDS 60.0%
! CCCCGGGACTAATGGATAGG+TGG + chr5.3:20362715-20362734 None:intergenic 60.0%
GCCGGTCCTCTTCTTTGCGC+TGG - chr5.3:20363247-20363266 MS.gene069145:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 20361898 20364047 20361898 ID=MS.gene069145
chr5.3 mRNA 20361898 20364047 20361898 ID=MS.gene069145.t1;Parent=MS.gene069145
chr5.3 exon 20363944 20364047 20363944 ID=MS.gene069145.t1.exon1;Parent=MS.gene069145.t1
chr5.3 CDS 20363944 20364047 20363944 ID=cds.MS.gene069145.t1;Parent=MS.gene069145.t1
chr5.3 exon 20363212 20363325 20363212 ID=MS.gene069145.t1.exon2;Parent=MS.gene069145.t1
chr5.3 CDS 20363212 20363325 20363212 ID=cds.MS.gene069145.t1;Parent=MS.gene069145.t1
chr5.3 exon 20362453 20362966 20362453 ID=MS.gene069145.t1.exon3;Parent=MS.gene069145.t1
chr5.3 CDS 20362453 20362966 20362453 ID=cds.MS.gene069145.t1;Parent=MS.gene069145.t1
chr5.3 exon 20362208 20362361 20362208 ID=MS.gene069145.t1.exon4;Parent=MS.gene069145.t1
chr5.3 CDS 20362208 20362361 20362208 ID=cds.MS.gene069145.t1;Parent=MS.gene069145.t1
chr5.3 exon 20361898 20362103 20361898 ID=MS.gene069145.t1.exon5;Parent=MS.gene069145.t1
chr5.3 CDS 20361898 20362103 20361898 ID=cds.MS.gene069145.t1;Parent=MS.gene069145.t1
Gene Sequence

>MS.gene069145

ATGGCAATAGATGCTACTAAACTAGTAGTGTTTCCTAAGAAGGCCTTTGGATGGGCAGCTAGGGACTCTTCCGGTGTTCTATCCCCTTTCCATTTCTTTAGAAGGTTCACTTCACTTATCACCTCTTCACTAATTTAATACATTTTTCTAACTCATAATTTTTTTTTCTACATCATCTTTTTTCCCTTTAATTTCAAAGAAAGGTAAAATCAATTTACTTTTAAAATATTTTTTATTTTTATTTTCTAAAATTTGTGTTAGTTTTATTTGGTAACAAGAAAATAATAAATTATTGATGTCAACAATTGTGTTCATTTTTTTTGTATAAAAATGCCAAAAAATAGTATATACAATTGTATTCATAACCAACATTTTATTTTACTCATCACAAAGCTTTTTAAAGTACATCTCGGGTTCTCTTATTAACAAGTTAAAATAACAGGTATTTAGAAAATGAGAATAGAATAATATTTCACAAAGTAAATAGTACTTAATATTTTCTTTTTATTTTTGATGTGTCAACTATTCAAAGAATGAATTGGATGGGATATGTGTTAATTGAATTAAGATTTGATGTTTACATCTATGTTCTTGGCTAACTAATATTTTTGATGTGTCAACTATTCTAAAGAATGAATTGGATGGGATGTGTTAATTGAATTAAGATTTGATGTTTACATCTATGTTCTTGGCTAACTAATTATGGTGCATCAAGACTTCAGGGAAACAGGTGAGAAAGATGTAGCATTCAAGGTGTTGTATTGTGGGATATGTCACTCTGACCTTCACATTATGCAGAATGAATGGGGCAAAACCACCTATCCATTAGTCCCGGGGTATGTTTTCAACACCTTTAACTTCTATTATAGTTTATTCCGTCGTTTCTTTTTAATTGTCACGTTTTAAGCAAAACAAATATTTTTATTTATTTTTTCTTTCACACTTCCGTAATTTTTATGAGTTATACCCTTACTTTATCAATTATTTTATACTTACTTTGATAACTAGTTGAGTGAGTAATCAAAAGAAATGAGTAGAAAATAACTGCTCAATTTGGTTATAACTGATGTAATAAATACAGGCATGAACTTGCGGGTATAGTAACCGAGGTTGGAAGCAAAGTAGAAAAGTTCAAAGTTGGAGACAAAGTAGGGGTGGGATACATGGTTGATTCATGTCGTTCATGCGAAAATTGTGCTGAAGATCTTGAGAATTACTGCCCCAAATATACTCAAACATTCAATGGTAAGTATCGCGATGGCACCATCACCTATGGAGGTTTCTCCGACTCAATGGTTGCAGATGAGCACTTTGTGATTCGCATTCCTGATAGCTTACCTCTTGATGGTGCCGGTCCTCTTCTTTGCGCTGGAGTCACAGTGTATAGTCCTCTTCGACATTTTGGACTCGACAAGCCTGGTATGAATATAGGAGTTGTTGGTCTTGGTGGACTTGGTCATATGGCTGTGAAATTTGCTAAAGCTTTTGGTGCTAAAGTGACCGTAATTAGTACATCGCCTAAAAAGGAAAAGGAAGCAATAGAACACTTAGGAGCAGACTCGTTTCTTGTAAGCCGCGATCCAGATCAGATGCAGGTACATTTCATTTGATTAATTTCGGAATCTTTCGTTATTTCAGAAATTGATAATGTCAATCAAGAAACTAATATTGTACAACATTTCATAGGCTGCAACGAGTACTTTGAATGGCATTATTGACACAGTTTCAGTGAGTCATCCTGTTTTACCATTGATTGGTTTATTGAAATCTAATGGAAAGCTTGTAATGGTTGGTGCAGTAGCAAAGCCTCTAGAGCTTCCTGTATTTTCTTTACTTGGAGGTAAGCATATGAAAAATGCTTGCATATATACACACTCACAAAACGCTAATGCTAATTATGCAGAACTTTAATGCTCACTTGTATTAATTTCGCATTATTGGTAGGGAGAAAGTCAATAGCTGGAAGTTTAATTGGAGGGATAAAGGAGACTCAAGAAATGATTGATTTTGCAGCTAAACACAATGTAACTCCTGAGATTGAGGTTGTTCCTATCGATTATGTCAACACAGCAATGGAGCGTCTTGCTAAAGGAGATGTCAAATATCGATTCGTGATTGATATTGGAAATTCATTAAAACCAAGCCCTTAA

Protein sequence

>MS.gene069145.t1

MAIDATKLVVFPKKAFGWAARDSSGVLSPFHFFRRETGEKDVAFKVLYCGICHSDLHIMQNEWGKTTYPLVPGHELAGIVTEVGSKVEKFKVGDKVGVGYMVDSCRSCENCAEDLENYCPKYTQTFNGKYRDGTITYGGFSDSMVADEHFVIRIPDSLPLDGAGPLLCAGVTVYSPLRHFGLDKPGMNIGVVGLGGLGHMAVKFAKAFGAKVTVISTSPKKEKEAIEHLGADSFLVSRDPDQMQAATSTLNGIIDTVSVSHPVLPLIGLLKSNGKLVMVGAVAKPLELPVFSLLGGRKSIAGSLIGGIKETQEMIDFAAKHNVTPEIEVVPIDYVNTAMERLAKGDVKYRFVIDIGNSLKPSP