AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene58045

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58045.t1 MTR_4g115300 96.399 361 13 0 1 361 1 361 0.0 724
MS.gene58045.t1 MTR_5g031230 83.380 361 60 0 1 361 1 361 0.0 619
MS.gene58045.t1 MTR_5g031250 82.271 361 64 0 1 361 1 361 0.0 600
MS.gene58045.t1 MTR_5g031210 81.717 361 66 0 1 361 1 361 0.0 592
MS.gene58045.t1 MTR_5g031310 81.073 354 67 0 7 360 8 361 0.0 588
MS.gene58045.t1 MTR_5g031305 80.226 354 70 0 7 360 8 361 0.0 583
MS.gene58045.t1 MTR_5g031390 79.501 361 74 0 1 361 1 361 0.0 578
MS.gene58045.t1 MTR_5g031300 77.966 354 78 0 8 361 9 362 0.0 575
MS.gene58045.t1 MTR_5g031360 76.923 351 81 0 10 360 12 362 0.0 559
MS.gene58045.t1 MTR_5g031190 75.069 361 90 0 1 361 1 361 0.0 554
MS.gene58045.t1 MTR_8g068190 76.389 360 85 0 1 360 1 360 0.0 535
MS.gene58045.t1 MTR_5g031180 75.623 361 88 0 1 361 1 361 0.0 529
MS.gene58045.t1 MTR_8g092630 64.620 342 120 1 16 357 73 413 1.14e-153 439
MS.gene58045.t1 MTR_5g031430 63.478 345 126 0 14 358 14 358 1.60e-148 423
MS.gene58045.t1 MTR_5g031250 83.817 241 39 0 1 241 1 241 2.93e-144 409
MS.gene58045.t1 MTR_1g025950 57.184 348 148 1 9 355 8 355 3.32e-133 385
MS.gene58045.t1 MTR_1g107425 50.992 353 171 1 1 353 1 351 1.28e-119 350
MS.gene58045.t1 MTR_2g009810 53.757 346 158 2 14 358 62 406 1.73e-116 344
MS.gene58045.t1 MTR_1g107425 52.797 286 133 1 1 286 1 284 9.68e-96 287
MS.gene58045.t1 MTR_2g009820 49.794 243 97 2 130 358 23 254 2.28e-63 202
MS.gene58045.t1 MTR_5g031290 79.825 114 23 0 247 360 80 193 7.29e-57 184
MS.gene58045.t1 MTR_5g031290 78.750 80 16 1 1 79 1 80 2.65e-40 141
MS.gene58045.t1 MTR_8g095220 26.970 330 211 8 10 312 51 377 1.02e-24 104
MS.gene58045.t1 MTR_8g095220 27.953 254 160 5 10 242 51 302 7.98e-23 97.8
MS.gene58045.t1 MTR_0001s0660 26.453 344 220 12 38 353 35 373 3.15e-19 89.0
MS.gene58045.t1 MTR_3g089977 25.143 350 221 11 39 354 37 379 2.11e-16 80.1
MS.gene58045.t1 MTR_3g089940 24.779 339 217 9 39 344 37 370 4.53e-16 79.0
MS.gene58045.t1 MTR_3g089940 24.779 339 217 9 39 344 37 370 5.07e-16 79.0
MS.gene58045.t1 MTR_7g068320 27.219 338 208 13 39 341 48 382 1.32e-15 77.8
MS.gene58045.t1 MTR_3g089970 24.484 339 218 9 39 344 38 371 5.27e-15 75.9
MS.gene58045.t1 MTR_3g089940 25.081 307 200 7 39 319 37 339 1.41e-14 74.3
MS.gene58045.t1 MTR_3g089940 25.081 307 200 7 39 319 37 339 1.68e-14 74.3
MS.gene58045.t1 MTR_7g099040 28.213 319 190 13 39 327 38 347 2.96e-14 73.6
MS.gene58045.t1 MTR_5g045710 24.169 331 216 10 38 338 35 360 1.97e-13 71.2
MS.gene58045.t1 MTR_3g099460 27.742 310 192 10 39 319 44 350 2.18e-13 71.2
MS.gene58045.t1 MTR_3g099460 27.742 310 192 10 39 319 37 343 2.24e-13 71.2
MS.gene58045.t1 MTR_1g069430 26.254 339 210 13 39 349 36 362 4.86e-13 70.1
MS.gene58045.t1 MTR_5g031380 67.500 40 13 0 81 120 20 59 1.69e-12 63.9
MS.gene58045.t1 MTR_7g068330 27.219 338 207 15 39 341 41 374 4.11e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58045.t1 AT4G37980 68.966 348 108 0 13 360 9 356 2.29e-166 469
MS.gene58045.t1 AT4G37970 62.817 355 132 0 6 360 7 361 1.57e-164 464
MS.gene58045.t1 AT4G37990 68.966 348 108 0 13 360 9 356 4.61e-163 460
MS.gene58045.t1 AT4G39330 61.281 359 139 0 1 359 1 359 2.41e-162 459
MS.gene58045.t1 AT2G21730 61.190 353 135 2 11 361 5 357 3.47e-154 439
MS.gene58045.t1 AT2G21890 61.364 352 135 1 11 361 5 356 6.45e-154 438
MS.gene58045.t1 AT4G39330 60.797 301 118 0 1 301 1 301 3.22e-130 375
MS.gene58045.t1 AT4G37980 68.772 285 89 0 13 297 9 293 2.53e-129 372
MS.gene58045.t1 AT4G37970 61.301 292 113 0 6 297 7 298 3.48e-127 367
MS.gene58045.t1 AT1G72680 52.586 348 164 1 11 358 9 355 1.78e-117 344
MS.gene58045.t1 AT3G19450 50.581 344 170 0 13 356 11 354 1.13e-109 325
MS.gene58045.t1 AT4G34230 52.802 339 160 0 15 353 12 350 1.28e-106 317
MS.gene58045.t1 AT4G34230 52.507 339 161 0 15 353 12 350 8.78e-106 315
MS.gene58045.t1 AT4G37970 61.088 239 93 0 6 244 7 245 2.29e-101 300
MS.gene58045.t1 AT4G37970 61.181 237 92 0 6 242 7 243 7.92e-101 298
MS.gene58045.t1 AT5G63620 29.181 281 167 9 25 278 70 345 1.07e-25 107
MS.gene58045.t1 AT5G63620 29.181 281 167 9 25 278 70 345 1.23e-25 107
MS.gene58045.t1 AT5G63620 30.000 240 141 8 25 242 70 304 9.65e-25 103
MS.gene58045.t1 AT1G64710 27.679 336 206 12 39 340 13 345 8.98e-20 89.7
MS.gene58045.t1 AT1G64710 27.679 336 206 12 39 340 36 368 1.15e-19 89.7
MS.gene58045.t1 AT1G22430 28.146 302 186 10 39 312 42 340 2.24e-19 89.0
MS.gene58045.t1 AT1G22430 28.146 302 186 10 39 312 42 340 2.24e-19 89.0
MS.gene58045.t1 AT1G32780 28.689 366 206 16 39 358 37 393 2.38e-17 83.2
MS.gene58045.t1 AT5G43940 26.299 308 195 9 39 319 48 350 5.75e-17 82.0
MS.gene58045.t1 AT5G43940 26.299 308 195 9 39 319 36 338 5.79e-17 81.6
MS.gene58045.t1 AT4G22110 26.549 339 212 13 39 343 43 378 2.37e-15 77.0
MS.gene58045.t1 AT4G22110 26.549 339 212 13 39 343 43 378 2.37e-15 77.0
MS.gene58045.t1 AT1G77120 22.701 348 238 8 36 354 33 378 3.46e-15 76.6
MS.gene58045.t1 AT1G22430 29.000 200 123 5 39 221 42 239 6.76e-15 75.1
MS.gene58045.t1 AT1G22430 29.000 200 123 5 39 221 42 239 9.11e-15 74.3
MS.gene58045.t1 AT1G22430 29.000 200 123 5 39 221 42 239 9.11e-15 74.3
MS.gene58045.t1 AT1G22440 26.646 319 183 13 39 319 40 345 2.25e-14 74.3
MS.gene58045.t1 AT4G22110 28.500 200 124 5 39 221 43 240 9.91e-13 68.2
MS.gene58045.t1 AT5G42250 24.026 308 205 8 39 319 45 350 2.86e-12 67.8

Find 88 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAGTCCTCTTCGATATTT+TGG 0.131767 8.3:+11809610 MS.gene58045:CDS
CCCCGTCTTTACTTTACTTT+CGG 0.214131 8.3:+11810040 MS.gene58045:CDS
GGTAGGCTTTACATTGTATT+TGG 0.226837 8.3:-11810377 None:intergenic
CCCGTCTTTACTTTACTTTC+GGG 0.233045 8.3:+11810041 MS.gene58045:CDS
GTTAAGTTTGCTAAAGCTTT+TGG 0.264666 8.3:+11809694 MS.gene58045:CDS
CATCCTCTCTCACCTCTAAT+TGG 0.269489 8.3:+11809957 MS.gene58045:CDS
ATAGTAGCTGGAAGTAATAT+TGG 0.310483 8.3:+11810316 MS.gene58045:CDS
GTTGTTGGTCTTGGTGGGCT+TGG 0.312818 8.3:+11809661 MS.gene58045:CDS
TTTATACTTGCATCTTATCT+TGG 0.330447 8.3:-11809807 None:intergenic
AAAGTAGAAAAGTTTAAAGT+TGG 0.357138 8.3:+11809346 MS.gene58045:CDS
TCCACCTATCCACTAGTTCC+TGG 0.377216 8.3:+11809188 MS.gene58045:CDS
GCCCAACCAAAGGCCACATT+TGG 0.377376 8.3:-11808645 None:intergenic
ACATTTGGATGCTCAAATTC+AGG 0.378005 8.3:-11808630 None:intergenic
AAAGGAAGCAAGAGAACTCT+TGG 0.393117 8.3:+11809756 MS.gene58045:CDS
GACTTCAGTAATCCAATTAG+AGG 0.398578 8.3:-11809969 None:intergenic
TCCAAATGTGGCCTTTGGTT+GGG 0.404435 8.3:+11808644 MS.gene58045:CDS
TTGTGTAGAATTTAAGAGCT+TGG 0.407998 8.3:-11810502 None:intergenic
TCTTGGTGGGCTTGGTCACA+TGG 0.411120 8.3:+11809669 MS.gene58045:CDS
CATATAGGTGTTGTTGGTCT+TGG 0.413940 8.3:+11809652 MS.gene58045:CDS
CCCCTTTCAATTTCTCCAGA+AGG 0.415467 8.3:+11808694 MS.gene58045:CDS
TCCACATGATTAAGAATGAA+TGG 0.429006 8.3:+11809159 MS.gene58045:CDS
ATAGGTGTTGTTGGTCTTGG+TGG 0.441219 8.3:+11809655 MS.gene58045:CDS
GCTGCTCCTCTTCTTTGTGC+TGG 0.441300 8.3:+11809577 MS.gene58045:CDS
GAGCATCCAAATGTGGCCTT+TGG 0.445115 8.3:+11808639 MS.gene58045:CDS
CCACATGATTAAGAATGAAT+GGG 0.451390 8.3:+11809160 MS.gene58045:CDS
GGGAGCTCGAGAGGCTTCGC+TGG 0.455382 8.3:-11810020 None:intergenic
TATCGATTTGTGATTGACAT+TGG 0.459329 8.3:+11810466 MS.gene58045:CDS
GGTATGCATATAGGTGTTGT+TGG 0.468283 8.3:+11809646 MS.gene58045:CDS
AAGTAATATTGGAGGGATGA+AGG 0.472105 8.3:+11810327 MS.gene58045:CDS
ATCCAAATGTGGCCTTTGGT+TGG 0.472346 8.3:+11808643 MS.gene58045:CDS
GCTTCAAGTGGTAAACCATC+AGG 0.481602 8.3:-11809553 None:intergenic
ACCTTCTGGAGAAATTGAAA+GGG 0.484740 8.3:-11808695 None:intergenic
GCAGGGAGAAAGATAGTAGC+TGG 0.485268 8.3:+11810304 MS.gene58045:intron
TACATCACCTAACAAAGAAA+AGG 0.487305 8.3:+11809738 MS.gene58045:CDS
AAATACAGACATGAGATTGT+TGG 0.489466 8.3:+11809301 MS.gene58045:intron
TACCATTGAAGTCATCCCTA+TGG 0.491456 8.3:+11810396 MS.gene58045:CDS
AACCTTCTGGAGAAATTGAA+AGG 0.496825 8.3:-11808696 None:intergenic
CGCTTTACAGCCACGTGCAG+TGG 0.500919 8.3:+11809451 MS.gene58045:CDS
GGTTGTAGACGAGCACTTTG+CGG 0.501852 8.3:+11809522 MS.gene58045:CDS
CCCGAAAGTAAAGTAAAGAC+GGG 0.510473 8.3:-11810041 None:intergenic
GACAAGCCTGGTATGCATAT+AGG 0.511811 8.3:+11809637 MS.gene58045:CDS
TAGGTGTTGTTGGTCTTGGT+GGG 0.518566 8.3:+11809656 MS.gene58045:CDS
TTTGCGGTTCACATTCCTGA+TGG 0.526271 8.3:+11809538 MS.gene58045:CDS
GTTTAAAGTTGGAGACAAAG+TGG 0.533040 8.3:+11809357 MS.gene58045:CDS
CGTGATGGCACCACCACATA+CGG 0.535685 8.3:+11809481 MS.gene58045:CDS
GTTGGAGACAAAGTGGGTGT+TGG 0.538424 8.3:+11809364 MS.gene58045:CDS
TTTAAAGTTGGAGACAAAGT+GGG 0.540239 8.3:+11809358 MS.gene58045:CDS
GTCTCTTGCTGCCCAACCAA+AGG 0.541338 8.3:-11808655 None:intergenic
ATCCATAGGGATGACTTCAA+TGG 0.541653 8.3:-11810398 None:intergenic
ATTGGATTACTGAAGTCTCA+TGG 0.542612 8.3:+11809975 MS.gene58045:CDS
TGTTGGTATAGTGACAAAAG+TGG 0.544306 8.3:+11809318 MS.gene58045:CDS
GCAGTGTTCACATAATCCAT+AGG 0.547554 8.3:-11810412 None:intergenic
AAGGAAGCAAGAGAACTCTT+GGG 0.547722 8.3:+11809757 MS.gene58045:CDS
CAGTGTTCACATAATCCATA+GGG 0.548716 8.3:-11810411 None:intergenic
CCACCTATCCACTAGTTCCT+GGG 0.558391 8.3:+11809189 MS.gene58045:CDS
ACGATATTTGCCACTGCACG+TGG 0.564598 8.3:-11809461 None:intergenic
CCCAGGAACTAGTGGATAGG+TGG 0.565658 8.3:-11809189 None:intergenic
CGGAGGTTACTCTGACTCAA+TGG 0.566334 8.3:+11809501 MS.gene58045:CDS
ACCCGAAAGTAAAGTAAAGA+CGG 0.569687 8.3:-11810042 None:intergenic
CCCATTCATTCTTAATCATG+TGG 0.570774 8.3:-11809160 None:intergenic
TGGGCAGCAAGAGACCAATC+TGG 0.572795 8.3:+11808663 MS.gene58045:CDS
GTTGGTATAGTGACAAAAGT+GGG 0.575434 8.3:+11809319 MS.gene58045:CDS
GTAAAGACGGGGAGCTCGAG+AGG 0.576499 8.3:-11810029 None:intergenic
GTCTCATGGAAAACTTGTAA+TGG 0.588488 8.3:+11809989 MS.gene58045:CDS
GTAGCTGGAAGTAATATTGG+AGG 0.593394 8.3:+11810319 MS.gene58045:CDS
AAGGGGAGAGAAGACCAGAT+TGG 0.593974 8.3:-11808677 None:intergenic
AAAGCATACCCAGGAACTAG+TGG 0.598271 8.3:-11809197 None:intergenic
AATCCAATTAGAGGTGAGAG+AGG 0.598290 8.3:-11809960 None:intergenic
ATAGGGATGACTTCAATGGT+AGG 0.600678 8.3:-11810394 None:intergenic
GTCAGAGTAACCTCCGTATG+TGG 0.602930 8.3:-11809494 None:intergenic
GTGATACCAGCACAAAGAAG+AGG 0.605032 8.3:-11809583 None:intergenic
ACAACACCTATATGCATACC+AGG 0.605327 8.3:-11809643 None:intergenic
CATGGAAAACTTGTAATGGT+TGG 0.608863 8.3:+11809993 MS.gene58045:CDS
GCTTCAATGGATACATTAGA+CGG 0.612870 8.3:+11809909 MS.gene58045:CDS
GGATTATGTGAACACTGCAA+TGG 0.614440 8.3:+11810417 MS.gene58045:CDS
TAGCTGGAAGTAATATTGGA+GGG 0.622888 8.3:+11810320 MS.gene58045:CDS
TGCAGTGGCAAATATCGTGA+TGG 0.628846 8.3:+11809466 MS.gene58045:CDS
ATACCCAGGAACTAGTGGAT+AGG 0.629537 8.3:-11809192 None:intergenic
TGAATTTGAGCATCCAAATG+TGG 0.630535 8.3:+11808632 MS.gene58045:CDS
TATCATTGACACAGTTTCAG+CGG 0.641419 8.3:+11809932 MS.gene58045:CDS
CACATGATTAAGAATGAATG+GGG 0.641925 8.3:+11809161 MS.gene58045:CDS
CTGCACGTGGCTGTAAAGCG+AGG 0.642024 8.3:-11809448 None:intergenic
AGAGGAGCAGCAGCTTCAAG+TGG 0.642094 8.3:-11809565 None:intergenic
TCGAGTCCAAAATATCGAAG+AGG 0.642096 8.3:-11809616 None:intergenic
CCTTCTGGAGAAATTGAAAG+GGG 0.653235 8.3:-11808694 None:intergenic
AGAGTAACCTCCGTATGTGG+TGG 0.659164 8.3:-11809491 None:intergenic
CCGAAAGTAAAGTAAAGACG+GGG 0.692920 8.3:-11810040 None:intergenic
GATGGCACCACCACATACGG+AGG 0.719955 8.3:+11809484 MS.gene58045:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACTATGTTAATAATTTTAT+AGG + chr8.3:11809887-11809906 MS.gene58045:intron 10.0%
!!! TATTTAATCTTTTCTTTTTT+TGG - chr8.3:11808790-11808809 None:intergenic 10.0%
!! AAATAAATATAGAAATGAAG+AGG - chr8.3:11808732-11808751 None:intergenic 15.0%
!! ACATTCTAATATTCTTAAAT+TGG + chr8.3:11809842-11809861 MS.gene58045:intron 15.0%
!! TAATATTCTTAAATTGGAAA+TGG + chr8.3:11809848-11809867 MS.gene58045:intron 15.0%
!! TTAGAATCAAAATAAAGTAA+TGG - chr8.3:11809271-11809290 None:intergenic 15.0%
!! TTTCTTATATATACAATTGA+AGG + chr8.3:11810146-11810165 MS.gene58045:intron 15.0%
!! ATAAATTAAAAAAACTGTGC+TGG - chr8.3:11808839-11808858 None:intergenic 20.0%
!!! AAAGTAGAAAAGTTTAAAGT+TGG + chr8.3:11809346-11809365 MS.gene58045:CDS 20.0%
!!! AATAATTTTATAGGCTTCAA+TGG + chr8.3:11809896-11809915 MS.gene58045:intron 20.0%
!!! TAAGACAATTTCTAAGATAA+TGG - chr8.3:11809241-11809260 None:intergenic 20.0%
!!! TAATCTTTTCTTTTTTTGGT+TGG - chr8.3:11808786-11808805 None:intergenic 20.0%
! TTTATACTTGCATCTTATCT+TGG - chr8.3:11809810-11809829 None:intergenic 25.0%
!!! ATTTTAATTAAAGCATACCC+AGG - chr8.3:11809209-11809228 None:intergenic 25.0%
!!! TCACTCAAAATATTGTTTTG+TGG + chr8.3:11809119-11809138 MS.gene58045:CDS 25.0%
AAATACAGACATGAGATTGT+TGG + chr8.3:11809301-11809320 MS.gene58045:intron 30.0%
AACGCAAGAACATTAAAATG+AGG - chr8.3:11808971-11808990 None:intergenic 30.0%
ATAGTAGCTGGAAGTAATAT+TGG + chr8.3:11810316-11810335 MS.gene58045:CDS 30.0%
CAAATCAAACAAGAGATCTA+TGG - chr8.3:11810191-11810210 None:intergenic 30.0%
CACATGATTAAGAATGAATG+GGG + chr8.3:11809161-11809180 MS.gene58045:CDS 30.0%
CCACATGATTAAGAATGAAT+GGG + chr8.3:11809160-11809179 MS.gene58045:CDS 30.0%
GTGGGTAGTAATTGAATATT+TGG + chr8.3:11809015-11809034 MS.gene58045:intron 30.0%
TACATCACCTAACAAAGAAA+AGG + chr8.3:11809738-11809757 MS.gene58045:CDS 30.0%
TCCACATGATTAAGAATGAA+TGG + chr8.3:11809159-11809178 MS.gene58045:CDS 30.0%
TTAATGTTCTTGCGTTAGAT+CGG + chr8.3:11808975-11808994 MS.gene58045:intron 30.0%
! TAGCTAGCATATATTTTCTC+TGG + chr8.3:11810069-11810088 MS.gene58045:intron 30.0%
! TATAGTCCTCTTCGATATTT+TGG + chr8.3:11809610-11809629 MS.gene58045:CDS 30.0%
! TTTAAAGTTGGAGACAAAGT+GGG + chr8.3:11809358-11809377 MS.gene58045:CDS 30.0%
!! TATCGATTTGTGATTGACAT+TGG + chr8.3:11810466-11810485 MS.gene58045:CDS 30.0%
!!! GTTAAGTTTGCTAAAGCTTT+TGG + chr8.3:11809694-11809713 MS.gene58045:CDS 30.0%
!!! TCTTTTCTTTTTTTGGTTGG+AGG - chr8.3:11808783-11808802 None:intergenic 30.0%
AAGTAATATTGGAGGGATGA+AGG + chr8.3:11810327-11810346 MS.gene58045:CDS 35.0%
ACATTTGGATGCTCAAATTC+AGG - chr8.3:11808633-11808652 None:intergenic 35.0%
ACCCGAAAGTAAAGTAAAGA+CGG - chr8.3:11810045-11810064 None:intergenic 35.0%
ATTGGATTACTGAAGTCTCA+TGG + chr8.3:11809975-11809994 MS.gene58045:CDS 35.0%
ATTTGTGTCTCCAAACTTTC+AGG + chr8.3:11809075-11809094 MS.gene58045:intron 35.0%
CAGTGTTCACATAATCCATA+GGG - chr8.3:11810414-11810433 None:intergenic 35.0%
CATGGAAAACTTGTAATGGT+TGG + chr8.3:11809993-11810012 MS.gene58045:CDS 35.0%
CATTTGTTTCCCTGAAAGTT+TGG - chr8.3:11809088-11809107 None:intergenic 35.0%
CCCATTCATTCTTAATCATG+TGG - chr8.3:11809163-11809182 None:intergenic 35.0%
GACTTCAGTAATCCAATTAG+AGG - chr8.3:11809972-11809991 None:intergenic 35.0%
GCTTCAATGGATACATTAGA+CGG + chr8.3:11809909-11809928 MS.gene58045:CDS 35.0%
GGTAGGCTTTACATTGTATT+TGG - chr8.3:11810380-11810399 None:intergenic 35.0%
GTCTCATGGAAAACTTGTAA+TGG + chr8.3:11809989-11810008 MS.gene58045:CDS 35.0%
GTTGGTATAGTGACAAAAGT+GGG + chr8.3:11809319-11809338 MS.gene58045:CDS 35.0%
TAGCTGGAAGTAATATTGGA+GGG + chr8.3:11810320-11810339 MS.gene58045:CDS 35.0%
TATCATTGACACAGTTTCAG+CGG + chr8.3:11809932-11809951 MS.gene58045:CDS 35.0%
TGAATTTGAGCATCCAAATG+TGG + chr8.3:11808632-11808651 MS.gene58045:CDS 35.0%
TGTTGGTATAGTGACAAAAG+TGG + chr8.3:11809318-11809337 MS.gene58045:CDS 35.0%
TTTGTGTCTCCAAACTTTCA+GGG + chr8.3:11809076-11809095 MS.gene58045:intron 35.0%
! AACCTTCTGGAGAAATTGAA+AGG - chr8.3:11808699-11808718 None:intergenic 35.0%
! ACCTTCTGGAGAAATTGAAA+GGG - chr8.3:11808698-11808717 None:intergenic 35.0%
! CTTGCTTCCTTTTCTTTGTT+AGG - chr8.3:11809748-11809767 None:intergenic 35.0%
! GTTTAAAGTTGGAGACAAAG+TGG + chr8.3:11809357-11809376 MS.gene58045:CDS 35.0%
!! TTTGATGATGCTAGCATTCA+TGG + chr8.3:11810282-11810301 MS.gene58045:intron 35.0%
AAAGGAAGCAAGAGAACTCT+TGG + chr8.3:11809756-11809775 MS.gene58045:CDS 40.0%
AAGGAAGCAAGAGAACTCTT+GGG + chr8.3:11809757-11809776 MS.gene58045:CDS 40.0%
AATCCAATTAGAGGTGAGAG+AGG - chr8.3:11809963-11809982 None:intergenic 40.0%
ACAACACCTATATGCATACC+AGG - chr8.3:11809646-11809665 None:intergenic 40.0%
ACCCACAATCCAATTCAACA+GGG - chr8.3:11809001-11809020 None:intergenic 40.0%
AGGTGAATGAATGAACCTTC+TGG - chr8.3:11808712-11808731 None:intergenic 40.0%
ATAGGGATGACTTCAATGGT+AGG - chr8.3:11810397-11810416 None:intergenic 40.0%
ATCCATAGGGATGACTTCAA+TGG - chr8.3:11810401-11810420 None:intergenic 40.0%
CCCCGTCTTTACTTTACTTT+CGG + chr8.3:11810040-11810059 MS.gene58045:CDS 40.0%
CCCGAAAGTAAAGTAAAGAC+GGG - chr8.3:11810044-11810063 None:intergenic 40.0%
CCCGTCTTTACTTTACTTTC+GGG + chr8.3:11810041-11810060 MS.gene58045:CDS 40.0%
CCGAAAGTAAAGTAAAGACG+GGG - chr8.3:11810043-11810062 None:intergenic 40.0%
GCAGTGTTCACATAATCCAT+AGG - chr8.3:11810415-11810434 None:intergenic 40.0%
GGATTATGTGAACACTGCAA+TGG + chr8.3:11810417-11810436 MS.gene58045:CDS 40.0%
GTAGCTGGAAGTAATATTGG+AGG + chr8.3:11810319-11810338 MS.gene58045:CDS 40.0%
TACCATTGAAGTCATCCCTA+TGG + chr8.3:11810396-11810415 MS.gene58045:CDS 40.0%
TACCCACAATCCAATTCAAC+AGG - chr8.3:11809002-11809021 None:intergenic 40.0%
TCGAGTCCAAAATATCGAAG+AGG - chr8.3:11809619-11809638 None:intergenic 40.0%
! CCTTCTGGAGAAATTGAAAG+GGG - chr8.3:11808697-11808716 None:intergenic 40.0%
! GGTATGCATATAGGTGTTGT+TGG + chr8.3:11809646-11809665 MS.gene58045:CDS 40.0%
!! CATATAGGTGTTGTTGGTCT+TGG + chr8.3:11809652-11809671 MS.gene58045:CDS 40.0%
AAAGCATACCCAGGAACTAG+TGG - chr8.3:11809200-11809219 None:intergenic 45.0%
ATCCAAATGTGGCCTTTGGT+TGG + chr8.3:11808643-11808662 MS.gene58045:CDS 45.0%
ATGATGCTAGCATTCATGGC+AGG + chr8.3:11810286-11810305 MS.gene58045:intron 45.0%
CATCCTCTCTCACCTCTAAT+TGG + chr8.3:11809957-11809976 MS.gene58045:CDS 45.0%
CCCCTTTCAATTTCTCCAGA+AGG + chr8.3:11808694-11808713 MS.gene58045:CDS 45.0%
GACAAGCCTGGTATGCATAT+AGG + chr8.3:11809637-11809656 MS.gene58045:CDS 45.0%
GCCCTGTTGAATTGGATTGT+GGG + chr8.3:11808997-11809016 MS.gene58045:intron 45.0%
GCTTCAAGTGGTAAACCATC+AGG - chr8.3:11809556-11809575 None:intergenic 45.0%
GTGATACCAGCACAAAGAAG+AGG - chr8.3:11809586-11809605 None:intergenic 45.0%
TCCAAATGTGGCCTTTGGTT+GGG + chr8.3:11808644-11808663 MS.gene58045:CDS 45.0%
TGATGCTAGCATTCATGGCA+GGG + chr8.3:11810287-11810306 MS.gene58045:intron 45.0%
TGCAGTGGCAAATATCGTGA+TGG + chr8.3:11809466-11809485 MS.gene58045:CDS 45.0%
TTAGATCGGCCCTGTTGAAT+TGG + chr8.3:11808989-11809008 MS.gene58045:intron 45.0%
TTTGCGGTTCACATTCCTGA+TGG + chr8.3:11809538-11809557 MS.gene58045:CDS 45.0%
! ATACCCAGGAACTAGTGGAT+AGG - chr8.3:11809195-11809214 None:intergenic 45.0%
!! ATAGGTGTTGTTGGTCTTGG+TGG + chr8.3:11809655-11809674 MS.gene58045:CDS 45.0%
!! TAGGTGTTGTTGGTCTTGGT+GGG + chr8.3:11809656-11809675 MS.gene58045:CDS 45.0%
!! TATTTTGGACTCGACAAGCC+TGG + chr8.3:11809625-11809644 MS.gene58045:CDS 45.0%
AAGGGGAGAGAAGACCAGAT+TGG - chr8.3:11808680-11808699 None:intergenic 50.0%
ACGATATTTGCCACTGCACG+TGG - chr8.3:11809464-11809483 None:intergenic 50.0%
AGAGTAACCTCCGTATGTGG+TGG - chr8.3:11809494-11809513 None:intergenic 50.0%
CCACCTATCCACTAGTTCCT+GGG + chr8.3:11809189-11809208 MS.gene58045:CDS 50.0%
CGGAGGTTACTCTGACTCAA+TGG + chr8.3:11809501-11809520 MS.gene58045:CDS 50.0%
GAGCATCCAAATGTGGCCTT+TGG + chr8.3:11808639-11808658 MS.gene58045:CDS 50.0%
GCAGGGAGAAAGATAGTAGC+TGG + chr8.3:11810304-11810323 MS.gene58045:intron 50.0%
GGCCCTGTTGAATTGGATTG+TGG + chr8.3:11808996-11809015 MS.gene58045:intron 50.0%
GGTTGTAGACGAGCACTTTG+CGG + chr8.3:11809522-11809541 MS.gene58045:CDS 50.0%
GTCAGAGTAACCTCCGTATG+TGG - chr8.3:11809497-11809516 None:intergenic 50.0%
GTTGGAGACAAAGTGGGTGT+TGG + chr8.3:11809364-11809383 MS.gene58045:CDS 50.0%
TCCACCTATCCACTAGTTCC+TGG + chr8.3:11809188-11809207 MS.gene58045:CDS 50.0%
AGAGGAGCAGCAGCTTCAAG+TGG - chr8.3:11809568-11809587 None:intergenic 55.0%
CGTGATGGCACCACCACATA+CGG + chr8.3:11809481-11809500 MS.gene58045:CDS 55.0%
GCCCAACCAAAGGCCACATT+TGG - chr8.3:11808648-11808667 None:intergenic 55.0%
GCTGCTCCTCTTCTTTGTGC+TGG + chr8.3:11809577-11809596 MS.gene58045:CDS 55.0%
GTCTCTTGCTGCCCAACCAA+AGG - chr8.3:11808658-11808677 None:intergenic 55.0%
TGGGCAGCAAGAGACCAATC+TGG + chr8.3:11808663-11808682 MS.gene58045:CDS 55.0%
! CCCAGGAACTAGTGGATAGG+TGG - chr8.3:11809192-11809211 None:intergenic 55.0%
!! GTTGTTGGTCTTGGTGGGCT+TGG + chr8.3:11809661-11809680 MS.gene58045:CDS 55.0%
!! TCTTGGTGGGCTTGGTCACA+TGG + chr8.3:11809669-11809688 MS.gene58045:CDS 55.0%
CGCTTTACAGCCACGTGCAG+TGG + chr8.3:11809451-11809470 MS.gene58045:CDS 60.0%
CTGCACGTGGCTGTAAAGCG+AGG - chr8.3:11809451-11809470 None:intergenic 60.0%
GATGGCACCACCACATACGG+AGG + chr8.3:11809484-11809503 MS.gene58045:CDS 60.0%
GTAAAGACGGGGAGCTCGAG+AGG - chr8.3:11810032-11810051 None:intergenic 60.0%
GGGAGCTCGAGAGGCTTCGC+TGG - chr8.3:11810023-11810042 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 11808618 11810513 11808618 ID=MS.gene58045
chr8.3 mRNA 11808618 11810513 11808618 ID=MS.gene58045.t1;Parent=MS.gene58045
chr8.3 exon 11808618 11808715 11808618 ID=MS.gene58045.t1.exon1;Parent=MS.gene58045.t1
chr8.3 CDS 11808618 11808715 11808618 ID=cds.MS.gene58045.t1;Parent=MS.gene58045.t1
chr8.3 exon 11809097 11809210 11809097 ID=MS.gene58045.t1.exon2;Parent=MS.gene58045.t1
chr8.3 CDS 11809097 11809210 11809097 ID=cds.MS.gene58045.t1;Parent=MS.gene58045.t1
chr8.3 exon 11809309 11809822 11809309 ID=MS.gene58045.t1.exon3;Parent=MS.gene58045.t1
chr8.3 CDS 11809309 11809822 11809309 ID=cds.MS.gene58045.t1;Parent=MS.gene58045.t1
chr8.3 exon 11809909 11810062 11809909 ID=MS.gene58045.t1.exon4;Parent=MS.gene58045.t1
chr8.3 CDS 11809909 11810062 11809909 ID=cds.MS.gene58045.t1;Parent=MS.gene58045.t1
chr8.3 exon 11810308 11810513 11810308 ID=MS.gene58045.t1.exon5;Parent=MS.gene58045.t1
chr8.3 CDS 11810308 11810513 11810308 ID=cds.MS.gene58045.t1;Parent=MS.gene58045.t1
Gene Sequence

>MS.gene58045

ATGGGATCACAACCTGAATTTGAGCATCCAAATGTGGCCTTTGGTTGGGCAGCAAGAGACCAATCTGGTCTTCTCTCCCCTTTCAATTTCTCCAGAAGGTTCATTCATTCACCTCTTCATTTCTATATTTATTTAACTACATTTTTTGTAAATGTCTTTAAGCCTCCAACCAAAAAAAGAAAAGATTAAATACAGTTATCAGATGATAAAGTTTTATTCCAGCACAGTTTTTTTAATTTATACTAGAACATTATACACATTGATCATTGACACATTTTTAATTTACTTGCAAAACAATTAGTTTATTTTTATAAAATCTAGTTTTTATGTTCTTTTTTTTACATAAATTACCTCATTTTAATGTTCTTGCGTTAGATCGGCCCTGTTGAATTGGATTGTGGGTAGTAATTGAATATTTGGACATGTTTAGAGTCAAAGTGTTAGCTAAATAACTCACATTTGTGTCTCCAAACTTTCAGGGAAACAAATGAAAAAGATGTGTCACTCAAAATATTGTTTTGTGGAATATGTCACACAGATCTCCACATGATTAAGAATGAATGGGGCATATCCACCTATCCACTAGTTCCTGGGTATGCTTTAATTAAAATCACTACTCACCATTATCTTAGAAATTGTCTTAGCTTTTTCCATTACTTTATTTTGATTCTAATTTATATAAGAAATACAGACATGAGATTGTTGGTATAGTGACAAAAGTGGGAAGCAAAGTAGAAAAGTTTAAAGTTGGAGACAAAGTGGGTGTTGGCTTCATGATCGATTCATGTCGATCATGTCAAAATTGTGCTGAAAATCTCGAAAGTTATTGTCCTCGCTTTACAGCCACGTGCAGTGGCAAATATCGTGATGGCACCACCACATACGGAGGTTACTCTGACTCAATGGTTGTAGACGAGCACTTTGCGGTTCACATTCCTGATGGTTTACCACTTGAAGCTGCTGCTCCTCTTCTTTGTGCTGGTATCACAGTGTATAGTCCTCTTCGATATTTTGGACTCGACAAGCCTGGTATGCATATAGGTGTTGTTGGTCTTGGTGGGCTTGGTCACATGGCTGTTAAGTTTGCTAAAGCTTTTGGTGCTAATGTGACTGTGATTAGTACATCACCTAACAAAGAAAAGGAAGCAAGAGAACTCTTGGGAGCTGACTCATTTTTGATAAGTCGTGACCAAGATAAGATGCAAGTATAAATACAATAGTTAAACATTCTAATATTCTTAAATTGGAAATGGTAATCAATTAGTAATTAACTATGTTAATAATTTTATAGGCTTCAATGGATACATTAGACGGTATCATTGACACAGTTTCAGCGGAACATCCTCTCTCACCTCTAATTGGATTACTGAAGTCTCATGGAAAACTTGTAATGGTTGGTGCTCCAGCGAAGCCTCTCGAGCTCCCCGTCTTTACTTTACTTTCGGGTAAGTTAGCTAGCATATATTTTCTCTGGTCTCATATATAAGACTAATTAGTCTAAATACGTTAACTTTTATTGATTCGACTTTTTCTTATATATACAATTGAAGGTAGTATATGAAAAACGCGTCCATAGATCTCTTGTTTGATTTGAAGCAATAACAAAGTGCATATATATAAGTATAATGCACATGAGAATATTAATTTAATTTATAAATAAACATTTTGATGATGCTAGCATTCATGGCAGGGAGAAAGATAGTAGCTGGAAGTAATATTGGAGGGATGAAGGAGACTCAAGATATGATTGATTTTGCTGCCAAATACAATGTAAAGCCTACCATTGAAGTCATCCCTATGGATTATGTGAACACTGCAATGGAGCGACTCGTCAAAGCAGATGTCAAATATCGATTTGTGATTGACATTGGAAACACTCTCAAACCAAGCTCTTAA
Protein sequence

>MS.gene58045.t1

MGSQPEFEHPNVAFGWAARDQSGLLSPFNFSRRETNEKDVSLKILFCGICHTDLHMIKNEWGISTYPLVPGHEIVGIVTKVGSKVEKFKVGDKVGVGFMIDSCRSCQNCAENLESYCPRFTATCSGKYRDGTTTYGGYSDSMVVDEHFAVHIPDGLPLEAAAPLLCAGITVYSPLRYFGLDKPGMHIGVVGLGGLGHMAVKFAKAFGANVTVISTSPNKEKEARELLGADSFLISRDQDKMQASMDTLDGIIDTVSAEHPLSPLIGLLKSHGKLVMVGAPAKPLELPVFTLLSGRKIVAGSNIGGMKETQDMIDFAAKYNVKPTIEVIPMDYVNTAMERLVKADVKYRFVIDIGNTLKPSS