Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69778.t1 | RHN80631.1 | 95.1 | 911 | 45 | 0 | 1 | 911 | 84 | 994 | 0.00E+00 | 1560 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69778.t1 | Q9NW13 | 35.8 | 784 | 417 | 17 | 142 | 911 | 48 | 759 | 1.0e-51 | 206.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69778.t1 | G7I6T9 | 95.1 | 911 | 45 | 0 | 1 | 911 | 52 | 962 | 0.0e+00 | 1560.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene69778 | 0.81917 | 1.34E-52 | -1.69E-46 |
| MS.gene049441 | MS.gene69778 | 0.810339 | 1.21E-50 | -1.69E-46 |
| MS.gene049672 | MS.gene69778 | 0.802163 | 6.39E-49 | -1.69E-46 |
| MS.gene049824 | MS.gene69778 | 0.844399 | 7.74E-59 | -1.69E-46 |
| MS.gene049825 | MS.gene69778 | 0.855627 | 5.56E-62 | -1.69E-46 |
| MS.gene049873 | MS.gene69778 | 0.843585 | 1.28E-58 | -1.69E-46 |
| MS.gene050303 | MS.gene69778 | 0.803835 | 2.88E-49 | -1.69E-46 |
| MS.gene050427 | MS.gene69778 | 0.833659 | 4.70E-56 | -1.69E-46 |
| MS.gene05045 | MS.gene69778 | 0.8033 | 3.72E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene69778 | 0.812145 | 4.91E-51 | -1.69E-46 |
| MS.gene051328 | MS.gene69778 | 0.808399 | 3.16E-50 | -1.69E-46 |
| MS.gene051700 | MS.gene69778 | 0.8268 | 2.22E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene69778 | 0.830521 | 2.80E-55 | -1.69E-46 |
| MS.gene051791 | MS.gene69778 | 0.814713 | 1.34E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene69778 | 0.809112 | 2.22E-50 | -1.69E-46 |
| MS.gene052611 | MS.gene69778 | 0.806246 | 9.03E-50 | -1.69E-46 |
| MS.gene052947 | MS.gene69778 | 0.809481 | 1.85E-50 | -1.69E-46 |
| MS.gene053122 | MS.gene69778 | 0.824727 | 6.90E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene69778 | 0.854939 | 8.81E-62 | -1.69E-46 |
| MS.gene053900 | MS.gene69778 | 0.816001 | 6.92E-52 | -1.69E-46 |
| MS.gene055466 | MS.gene69778 | 0.822712 | 2.05E-53 | -1.69E-46 |
| MS.gene055468 | MS.gene69778 | 0.810782 | 9.71E-51 | -1.69E-46 |
| MS.gene055512 | MS.gene69778 | 0.809698 | 1.66E-50 | -1.69E-46 |
| MS.gene055580 | MS.gene69778 | -0.840822 | 6.90E-58 | -1.69E-46 |
| MS.gene055778 | MS.gene69778 | 0.823539 | 1.31E-53 | -1.69E-46 |
| MS.gene055808 | MS.gene69778 | 0.827941 | 1.18E-54 | -1.69E-46 |
| MS.gene056043 | MS.gene69778 | -0.822877 | 1.87E-53 | -1.69E-46 |
| MS.gene056091 | MS.gene69778 | 0.817988 | 2.48E-52 | -1.69E-46 |
| MS.gene056170 | MS.gene69778 | 0.800055 | 1.72E-48 | -1.69E-46 |
| MS.gene056215 | MS.gene69778 | 0.802629 | 5.12E-49 | -1.69E-46 |
| MS.gene056368 | MS.gene69778 | 0.810381 | 1.19E-50 | -1.69E-46 |
| MS.gene056542 | MS.gene69778 | 0.806533 | 7.85E-50 | -1.69E-46 |
| MS.gene056545 | MS.gene69778 | 0.813176 | 2.92E-51 | -1.69E-46 |
| MS.gene056553 | MS.gene69778 | 0.807398 | 5.16E-50 | -1.69E-46 |
| MS.gene056631 | MS.gene69778 | 0.821091 | 4.85E-53 | -1.69E-46 |
| MS.gene058037 | MS.gene69778 | 0.816102 | 6.57E-52 | -1.69E-46 |
| MS.gene058625 | MS.gene69778 | 0.80081 | 1.21E-48 | -1.69E-46 |
| MS.gene05954 | MS.gene69778 | 0.82305 | 1.71E-53 | -1.69E-46 |
| MS.gene059625 | MS.gene69778 | 0.816469 | 5.44E-52 | -1.69E-46 |
| MS.gene059935 | MS.gene69778 | 0.80744 | 5.05E-50 | -1.69E-46 |
| MS.gene06001 | MS.gene69778 | 0.831178 | 1.93E-55 | -1.69E-46 |
| MS.gene060429 | MS.gene69778 | 0.875627 | 2.65E-68 | -1.69E-46 |
| MS.gene060587 | MS.gene69778 | 0.806006 | 1.01E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69778.t1 | MTR_1g080390 | 98.134 | 911 | 17 | 0 | 1 | 911 | 52 | 962 | 0.0 | 1830 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69778.t1 | AT2G21440 | 46.526 | 993 | 409 | 20 | 1 | 911 | 51 | 1003 | 0.0 | 752 |
| MS.gene69778.t1 | AT1G54080 | 27.103 | 214 | 127 | 5 | 146 | 347 | 64 | 260 | 7.27e-11 | 65.9 |
Find 193 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCTTCCTTTGGTTCTTT+TGG | 0.108090 | 1.1:+59690397 | None:intergenic |
| TCTGTTTCCTTGGAAGTTTC+AGG | 0.151548 | 1.1:+59685752 | None:intergenic |
| TGCTTCTGGGATGGGTATTT+TGG | 0.157301 | 1.1:-59685448 | MS.gene69778:CDS |
| CGTTACGAAGTTTCAATTTC+TGG | 0.157364 | 1.1:+59684238 | None:intergenic |
| TTAACAGTTTCCTTGGATTT+TGG | 0.171316 | 1.1:+59685830 | None:intergenic |
| ACTGAATCTTTGTTCTTCTT+TGG | 0.190926 | 1.1:+59683751 | None:intergenic |
| GGGGTCCCCTTTCTGTCTTT+TGG | 0.224958 | 1.1:+59684005 | None:intergenic |
| TCAACTGCCAATACTGCTTC+TGG | 0.228699 | 1.1:-59685462 | MS.gene69778:CDS |
| AAGAAAGAAGACGCAGTATT+TGG | 0.233382 | 1.1:-59683829 | MS.gene69778:CDS |
| GTAATTTAGCACCATGATTC+TGG | 0.234712 | 1.1:+59683899 | None:intergenic |
| GGTAAGGGGTAGACCATTAA+AGG | 0.238442 | 1.1:-59685427 | MS.gene69778:CDS |
| GTTGCTAGAACTGTTATATT+TGG | 0.244405 | 1.1:-59689973 | MS.gene69778:CDS |
| AGAGCCTTTAAAACCTTTAA+TGG | 0.253378 | 1.1:+59685414 | None:intergenic |
| CACTTTGGTATTTGTACTCT+TGG | 0.267190 | 1.1:+59683984 | None:intergenic |
| GATAAAGACAGCGGATTATC+TGG | 0.273260 | 1.1:-59690442 | MS.gene69778:CDS |
| AGGCCAAAGAAAATGAAATA+AGG | 0.273524 | 1.1:-59688352 | MS.gene69778:CDS |
| ACTTTGGTATTTGTACTCTT+GGG | 0.305244 | 1.1:+59683985 | None:intergenic |
| AAACTCAATGGATCGAAGTT+TGG | 0.305477 | 1.1:-59688011 | MS.gene69778:CDS |
| TTTCATCTGCGGGGACTGTA+TGG | 0.307723 | 1.1:-59688322 | MS.gene69778:CDS |
| TCCACAATTGGCCGATGTTC+AGG | 0.314138 | 1.1:+59684279 | None:intergenic |
| TTCCTTTCCGAAGAAGCTTT+TGG | 0.331812 | 1.1:+59683943 | None:intergenic |
| TAACCAACCTGCCGAATTAC+AGG | 0.333219 | 1.1:+59684773 | None:intergenic |
| TCTACACAACATCGTGGTTT+TGG | 0.333522 | 1.1:-59691590 | MS.gene69778:CDS |
| ATAGTTCCATTGACAGTAAT+AGG | 0.336958 | 1.1:-59683864 | MS.gene69778:CDS |
| CACCATGATTCTGGCCATCT+TGG | 0.340703 | 1.1:+59683908 | None:intergenic |
| CAATCGCAACCTTCTTCCTT+TGG | 0.342154 | 1.1:+59690388 | None:intergenic |
| TGTCAGAAACCTTCCTTTCA+AGG | 0.342388 | 1.1:-59688457 | MS.gene69778:intron |
| TTTCATAACAAAATTATGAT+TGG | 0.345149 | 1.1:+59683605 | None:intergenic |
| CAAATCAACTTCTGTTTCCT+TGG | 0.354494 | 1.1:+59685742 | None:intergenic |
| GTCGTCTCATAGCTGTTGAT+TGG | 0.358840 | 1.1:-59687986 | MS.gene69778:CDS |
| AACTCAATGGATCGAAGTTT+GGG | 0.358983 | 1.1:-59688010 | MS.gene69778:CDS |
| GTTATTTACAGATTCGTCTT+TGG | 0.369847 | 1.1:+59685883 | None:intergenic |
| AAGCAGGGGAAAAGGTTTCT+AGG | 0.374787 | 1.1:-59683780 | MS.gene69778:CDS |
| TGCACCCTTAACAGTTTCCT+TGG | 0.378021 | 1.1:+59685823 | None:intergenic |
| CTGTTTCATGGTTACACAAA+AGG | 0.379270 | 1.1:-59691692 | None:intergenic |
| GACAGTAATAGGAAAATATC+AGG | 0.382523 | 1.1:-59683853 | MS.gene69778:CDS |
| CTATTAAGCATCCCCTTTCA+AGG | 0.383007 | 1.1:-59689882 | MS.gene69778:CDS |
| GCTGAAACCCCTTCGGCAGC+TGG | 0.384100 | 1.1:+59685193 | None:intergenic |
| AGAACCCTTGTGTGAGAACT+TGG | 0.390972 | 1.1:+59683678 | None:intergenic |
| CTCTGAAGCAGGAGCATCAT+TGG | 0.391724 | 1.1:+59687932 | None:intergenic |
| AAAATCCAAGGAAACTGTTA+AGG | 0.392787 | 1.1:-59685828 | MS.gene69778:CDS |
| AAAGGCTCTGGACAAGAAAT+CGG | 0.400061 | 1.1:-59685400 | MS.gene69778:CDS |
| CCGTGTTCACTATTTGAATC+TGG | 0.400337 | 1.1:+59684069 | None:intergenic |
| GCTAGAACTGTTATATTTGG+TGG | 0.404207 | 1.1:-59689970 | MS.gene69778:CDS |
| CACCGCCAAGCCAGAGAAAT+CGG | 0.405483 | 1.1:-59689916 | MS.gene69778:CDS |
| ATCTAATTCAAAGGGAAGAT+TGG | 0.406524 | 1.1:+59685700 | None:intergenic |
| AAGCTTCCATTTCTGAGTCT+TGG | 0.414414 | 1.1:+59688482 | None:intergenic |
| AGACCACCGCAATCTTTACT+TGG | 0.416144 | 1.1:-59685337 | MS.gene69778:CDS |
| TCCTGTGTGCAGTCTTTCAA+AGG | 0.416759 | 1.1:-59688179 | MS.gene69778:intron |
| AAACCGTTGCTTCACTTCTT+CGG | 0.420518 | 1.1:+59685676 | None:intergenic |
| TGCGTAAACTCCCGCATTGT+CGG | 0.425962 | 1.1:+59684152 | None:intergenic |
| GGCCAAAGAAAATGAAATAA+GGG | 0.433746 | 1.1:-59688351 | MS.gene69778:CDS |
| AGAAAGTCCAAAAGCTTCTT+CGG | 0.435552 | 1.1:-59683950 | MS.gene69778:CDS |
| CCAAGCAAATACCTGTAATT+CGG | 0.436673 | 1.1:-59684784 | MS.gene69778:CDS |
| TTGGTCACTTGGTGGAGAAC+AGG | 0.437156 | 1.1:+59685623 | None:intergenic |
| TGAACCATTCTTCAGCTCAA+TGG | 0.445046 | 1.1:+59690718 | None:intergenic |
| CTGAAGATCATTCCTTGAAA+GGG | 0.446240 | 1.1:+59689870 | None:intergenic |
| ACACACAGTGCCGATTTCTC+TGG | 0.447857 | 1.1:+59689906 | None:intergenic |
| TGCCGATTTCTCTGGCTTGG+CGG | 0.449281 | 1.1:+59689914 | None:intergenic |
| CAACTGCCAATACTGCTTCT+GGG | 0.451408 | 1.1:-59685461 | MS.gene69778:CDS |
| AGAGTTCTTAACAATAATCC+TGG | 0.454597 | 1.1:-59684543 | MS.gene69778:intron |
| AATCTAAACAGCTTAGGAAA+TGG | 0.456031 | 1.1:-59683630 | MS.gene69778:CDS |
| CCTGTGTGCAGTCTTTCAAA+GGG | 0.458416 | 1.1:-59688178 | MS.gene69778:intron |
| GGCTTGGCGGTGAACATCTT+CGG | 0.460580 | 1.1:+59689927 | None:intergenic |
| CTAGGACATACTTGGTCACT+TGG | 0.461965 | 1.1:+59685612 | None:intergenic |
| GCGTAAACTCCCGCATTGTC+GGG | 0.462564 | 1.1:+59684153 | None:intergenic |
| GCCAATACTGCTTCTGGGAT+GGG | 0.465705 | 1.1:-59685456 | MS.gene69778:CDS |
| TCAAGAGCAAACTCCACAAT+TGG | 0.466178 | 1.1:+59684267 | None:intergenic |
| AGCATCAACCAACCTTGATC+CGG | 0.467750 | 1.1:+59690623 | None:intergenic |
| ATCGGCTCATGACAAGGAAC+AGG | 0.468605 | 1.1:-59685382 | MS.gene69778:CDS |
| ACCCATCCCAGAAGCAGTAT+TGG | 0.471074 | 1.1:+59685455 | None:intergenic |
| TTTGGGCACGCCAACTTGGT+GGG | 0.473129 | 1.1:-59689198 | MS.gene69778:CDS |
| ACTGTTTGGGCACGCCAACT+TGG | 0.473827 | 1.1:-59689202 | MS.gene69778:CDS |
| CATTCTTCAGCTCAATGGCT+TGG | 0.474934 | 1.1:+59690723 | None:intergenic |
| CCAAGAACAAGCAGGGGAAA+AGG | 0.475052 | 1.1:-59683788 | MS.gene69778:CDS |
| TGAGCTGAAGAATGGTTCAT+TGG | 0.476836 | 1.1:-59690714 | MS.gene69778:CDS |
| TAGGAGGGACTTATTCTTGA+CGG | 0.477564 | 1.1:-59685220 | MS.gene69778:CDS |
| CAGGCGATTCGAAAACTCAA+TGG | 0.479592 | 1.1:-59688023 | MS.gene69778:CDS |
| TGCAGGCGTCCACGAGGGAC+TGG | 0.480915 | 1.1:-59685528 | MS.gene69778:intron |
| GGCAAATCCAAAAGACAGAA+AGG | 0.484725 | 1.1:-59684012 | MS.gene69778:CDS |
| TACAGATTCGTCTTTGGCAG+AGG | 0.486047 | 1.1:+59685889 | None:intergenic |
| TGCCAATACTGCTTCTGGGA+TGG | 0.486395 | 1.1:-59685457 | MS.gene69778:CDS |
| CTTTGGTATTTGTACTCTTG+GGG | 0.486960 | 1.1:+59683986 | None:intergenic |
| GTTTGGGCACGCCAACTTGG+TGG | 0.487001 | 1.1:-59689199 | MS.gene69778:CDS |
| CGAAGATCGAAACCGGATCA+AGG | 0.488053 | 1.1:-59690635 | MS.gene69778:intron |
| CAGTGCCGATTTCTCTGGCT+TGG | 0.490360 | 1.1:+59689911 | None:intergenic |
| AATGATAAACCCGACAATGC+GGG | 0.495453 | 1.1:-59684162 | MS.gene69778:CDS |
| GATTTCTTTAGGACAACAAA+AGG | 0.498067 | 1.1:-59686089 | MS.gene69778:intron |
| ATGGTTCATTGGTTGGTGAC+CGG | 0.499594 | 1.1:-59690703 | MS.gene69778:CDS |
| TCGTCTCATAGCTGTTGATT+GGG | 0.499678 | 1.1:-59687985 | MS.gene69778:CDS |
| TGTTTCATGGTTACACAAAA+GGG | 0.499866 | 1.1:-59691691 | None:intergenic |
| TCATTGACCACAGAAACCTT+TGG | 0.500631 | 1.1:-59684303 | MS.gene69778:intron |
| TTCTCACACAAGGGTTCTCA+AGG | 0.501028 | 1.1:-59683673 | MS.gene69778:CDS |
| AGGGAGCCAAGACTCAGAAA+TGG | 0.503890 | 1.1:-59688488 | MS.gene69778:CDS |
| AGAAATATCTGAAACCTTGT+CGG | 0.504739 | 1.1:+59685778 | None:intergenic |
| GCAAATCCAAAAGACAGAAA+GGG | 0.507205 | 1.1:-59684011 | MS.gene69778:CDS |
| TGAAAATCGAAGATCGAAAC+CGG | 0.507609 | 1.1:-59690642 | MS.gene69778:CDS |
| GGGAAAAGGTTTCTAGGAAA+AGG | 0.509364 | 1.1:-59683774 | MS.gene69778:CDS |
| CCGAATTACAGGTATTTGCT+TGG | 0.511846 | 1.1:+59684784 | None:intergenic |
| TCTTCGGTATCTAATTCAAA+GGG | 0.513395 | 1.1:+59685692 | None:intergenic |
| TTCTTTCGATGAGATCACTT+TGG | 0.514477 | 1.1:+59683969 | None:intergenic |
| GCTGAAGATCATTCCTTGAA+AGG | 0.515929 | 1.1:+59689869 | None:intergenic |
| CACGGTGGTAGAGTGCCAAA+TGG | 0.516262 | 1.1:-59684051 | MS.gene69778:CDS |
| TCAACAGATCGAACCTTGAA+AGG | 0.517773 | 1.1:+59688444 | None:intergenic |
| TTCATCTGCGGGGACTGTAT+GGG | 0.521165 | 1.1:-59688321 | MS.gene69778:CDS |
| AAGACGCAGTATTTGGAAAG+AGG | 0.521867 | 1.1:-59683822 | MS.gene69778:CDS |
| ATCAGTGGCTGAAACCCCTT+CGG | 0.522666 | 1.1:+59685186 | None:intergenic |
| TTCTTCGGTATCTAATTCAA+AGG | 0.523243 | 1.1:+59685691 | None:intergenic |
| GACGGAACTCCAGCTGCCGA+AGG | 0.523716 | 1.1:-59685202 | MS.gene69778:CDS |
| CAATGATGCTCCTGCTTCAG+AGG | 0.523848 | 1.1:-59687931 | MS.gene69778:CDS |
| CAGATCGAACCTTGAAAGGA+AGG | 0.524767 | 1.1:+59688448 | None:intergenic |
| GAAATATTTATAGTTTGGAA+AGG | 0.525585 | 1.1:-59684940 | MS.gene69778:intron |
| CAAGCCATTGAGCTGAAGAA+TGG | 0.526625 | 1.1:-59690722 | MS.gene69778:CDS |
| GAACAAAGATTCAGTAGGGA+AGG | 0.527716 | 1.1:-59683743 | MS.gene69778:CDS |
| AACCAAGATGGCCAGAATCA+TGG | 0.528146 | 1.1:-59683910 | MS.gene69778:CDS |
| TCCTGAACATCGGCCAATTG+TGG | 0.528514 | 1.1:-59684280 | MS.gene69778:CDS |
| AAATCCAAGGAAACTGTTAA+GGG | 0.531440 | 1.1:-59685827 | MS.gene69778:CDS |
| CCAAAAGAACCAAAGGAAGA+AGG | 0.533227 | 1.1:-59690397 | MS.gene69778:intron |
| AAGAAGAACAAAGATTCAGT+AGG | 0.534680 | 1.1:-59683748 | MS.gene69778:CDS |
| GATGCAATAGAGGGCAATGA+AGG | 0.535517 | 1.1:-59690490 | MS.gene69778:intron |
| AAATTACCTTCCTCTGAAGC+AGG | 0.535871 | 1.1:+59687921 | None:intergenic |
| TGCATTATCAGCTGCTTCCG+CGG | 0.535875 | 1.1:+59685488 | None:intergenic |
| ATGCATAACCAAGAACAAGC+AGG | 0.537887 | 1.1:-59683796 | MS.gene69778:CDS |
| TTCCCAGGTCTGCTGCAAGA+AGG | 0.538150 | 1.1:-59689319 | MS.gene69778:intron |
| GCAAATACCTGTAATTCGGC+AGG | 0.538494 | 1.1:-59684780 | MS.gene69778:intron |
| TTCTAAGCCTGAAACTTCCA+AGG | 0.542108 | 1.1:-59685759 | MS.gene69778:CDS |
| GATGCTCCTGCTTCAGAGGA+AGG | 0.546927 | 1.1:-59687927 | MS.gene69778:intron |
| ACTGACAAAGAATCTGATCA+AGG | 0.547224 | 1.1:-59686019 | MS.gene69778:CDS |
| TGGCCGATGTTCAGGACCAA+AGG | 0.547311 | 1.1:+59684287 | None:intergenic |
| GGACATACTTGGTCACTTGG+TGG | 0.548184 | 1.1:+59685615 | None:intergenic |
| AAAGAACAAGCCAAAATCCA+AGG | 0.552898 | 1.1:-59685840 | MS.gene69778:CDS |
| ACGGAACTCCAGCTGCCGAA+GGG | 0.553197 | 1.1:-59685201 | MS.gene69778:CDS |
| CAATGTTGCAACAGAAGCAC+GGG | 0.556088 | 1.1:+59689249 | None:intergenic |
| TTGGGCACGCCAACTTGGTG+GGG | 0.556141 | 1.1:-59689197 | MS.gene69778:CDS |
| TGGTCTCGTGAATTCTGCTA+TGG | 0.558745 | 1.1:-59689950 | MS.gene69778:CDS |
| GGCACGCCAACTTGGTGGGG+AGG | 0.559247 | 1.1:-59689194 | MS.gene69778:intron |
| CATGGTGCTAAATTACATGA+AGG | 0.559370 | 1.1:-59683892 | MS.gene69778:CDS |
| TTCAGTTCCAAAAGAACCAA+AGG | 0.560178 | 1.1:-59690404 | MS.gene69778:CDS |
| CTGAAGAATGGTTCATTGGT+TGG | 0.562960 | 1.1:-59690710 | MS.gene69778:CDS |
| ATTCAAGAAAAGCGACTCCA+CGG | 0.563574 | 1.1:+59684598 | None:intergenic |
| CAAGAAATCGGCTCATGACA+AGG | 0.564214 | 1.1:-59685388 | MS.gene69778:CDS |
| ACTTTACCTCCCCACCAAGT+TGG | 0.564510 | 1.1:+59689188 | None:intergenic |
| TTGTAATGACACAGCAGATG+AGG | 0.565429 | 1.1:-59690215 | MS.gene69778:CDS |
| GTCCAAAAGCTTCTTCGGAA+AGG | 0.566021 | 1.1:-59683945 | MS.gene69778:CDS |
| AGAAGAACAAAGATTCAGTA+GGG | 0.570029 | 1.1:-59683747 | MS.gene69778:CDS |
| CAAATCCAAAAGACAGAAAG+GGG | 0.571325 | 1.1:-59684010 | MS.gene69778:CDS |
| GAAAGATGGCAGGAAAGGAA+AGG | 0.571880 | 1.1:-59684643 | MS.gene69778:CDS |
| TGCATAACCAAGAACAAGCA+GGG | 0.575155 | 1.1:-59683795 | MS.gene69778:CDS |
| TGTAATGACACAGCAGATGA+GGG | 0.575965 | 1.1:-59690214 | MS.gene69778:CDS |
| TGACAAACCAGCAAAAGACT+TGG | 0.576336 | 1.1:-59684094 | MS.gene69778:CDS |
| GCAATGTTGCAACAGAAGCA+CGG | 0.579403 | 1.1:+59689248 | None:intergenic |
| CCGCAATCTTTACTTGGCGA+AGG | 0.588434 | 1.1:-59685331 | MS.gene69778:intron |
| CGGAACTCCAGCTGCCGAAG+GGG | 0.589924 | 1.1:-59685200 | MS.gene69778:CDS |
| AAAGCTACAGTATCAGCAGC+GGG | 0.590881 | 1.1:-59684214 | MS.gene69778:CDS |
| TTCAAGAAAAGCGACTCCAC+GGG | 0.595349 | 1.1:+59684599 | None:intergenic |
| TTGTCAAAATCATCGTCAGA+AGG | 0.599134 | 1.1:+59685956 | None:intergenic |
| CAAAAGGTGACAGATGAAGA+TGG | 0.601633 | 1.1:-59686073 | MS.gene69778:CDS |
| TACCCTGTGTCGGACTTCTG+TGG | 0.606080 | 1.1:+59688287 | None:intergenic |
| TAATGACACAGCAGATGAGG+GGG | 0.608560 | 1.1:-59690212 | MS.gene69778:CDS |
| ATTCCACAGAAGTCCGACAC+AGG | 0.608649 | 1.1:-59688290 | MS.gene69778:CDS |
| AGGAATGATCTTCAGCAGCA+TGG | 0.610357 | 1.1:-59689862 | MS.gene69778:intron |
| AAGGAATATATACCCTGTGT+CGG | 0.616888 | 1.1:+59688277 | None:intergenic |
| AAGGGTTCTCAAGGAAATGA+CGG | 0.619296 | 1.1:-59683664 | MS.gene69778:CDS |
| CAGCAGCGGGCTCCTCACAA+TGG | 0.623421 | 1.1:-59684201 | MS.gene69778:CDS |
| TAGATCCAAGTTCTCACACA+AGG | 0.623451 | 1.1:-59683683 | MS.gene69778:CDS |
| TTTCTGCTGTTGCCATTGTG+AGG | 0.623452 | 1.1:+59684189 | None:intergenic |
| TGAAGATCATTCCTTGAAAG+GGG | 0.624383 | 1.1:+59689871 | None:intergenic |
| ATCTGCGGGGACTGTATGGG+AGG | 0.628989 | 1.1:-59688318 | MS.gene69778:CDS |
| AAATGATAAACCCGACAATG+CGG | 0.629902 | 1.1:-59684163 | MS.gene69778:CDS |
| CCAAATGGAAAATCTCCTCA+AGG | 0.629918 | 1.1:-59684036 | MS.gene69778:CDS |
| CCAGATTCAAATAGTGAACA+CGG | 0.633933 | 1.1:-59684069 | MS.gene69778:CDS |
| AAACCTTTGGTCCTGAACAT+CGG | 0.642171 | 1.1:-59684290 | MS.gene69778:CDS |
| GTAATGACACAGCAGATGAG+GGG | 0.644262 | 1.1:-59690213 | MS.gene69778:CDS |
| CAAGAACAGCAGTATTCCCG+TGG | 0.650331 | 1.1:-59684615 | MS.gene69778:CDS |
| AGATGGTAGTACTACTACTG+AGG | 0.654593 | 1.1:-59686056 | MS.gene69778:CDS |
| ATACCGAAGAAGTGAAGCAA+CGG | 0.656518 | 1.1:-59685679 | MS.gene69778:CDS |
| AATGCGGGAGTTTACGCACA+TGG | 0.658005 | 1.1:-59684147 | MS.gene69778:CDS |
| TAGTGATATTGATAGTGTTG+TGG | 0.658825 | 1.1:-59685990 | MS.gene69778:CDS |
| CTCAATGCAGGCGTCCACGA+GGG | 0.661595 | 1.1:-59685533 | MS.gene69778:intron |
| TGATATTGATAGTGTTGTGG+AGG | 0.663472 | 1.1:-59685987 | MS.gene69778:CDS |
| TTCCACAGAAGTCCGACACA+GGG | 0.667711 | 1.1:-59688289 | MS.gene69778:intron |
| TTAAGAAAACCAGTCCCTCG+TGG | 0.669577 | 1.1:+59685519 | None:intergenic |
| GCATAACCAAGAACAAGCAG+GGG | 0.676330 | 1.1:-59683794 | MS.gene69778:CDS |
| AACATCTAAAGAGTCCGACA+AGG | 0.679032 | 1.1:-59685792 | MS.gene69778:CDS |
| ACTCAATGCAGGCGTCCACG+AGG | 0.680693 | 1.1:-59685534 | MS.gene69778:intron |
| AAAAGCTACAGTATCAGCAG+CGG | 0.686433 | 1.1:-59684215 | MS.gene69778:CDS |
| AGATCCAAGTTCTCACACAA+GGG | 0.701976 | 1.1:-59683682 | MS.gene69778:CDS |
| TCGCCAAGTAAAGATTGCGG+TGG | 0.704028 | 1.1:+59685334 | None:intergenic |
| TCAGGGTCTACACAACATCG+TGG | 0.720317 | 1.1:-59691596 | MS.gene69778:intron |
| AATGGAAAATCTCCTCAAGG+AGG | 0.725686 | 1.1:-59684033 | MS.gene69778:CDS |
| AATGACACAGCAGATGAGGG+GGG | 0.726717 | 1.1:-59690211 | MS.gene69778:CDS |
| CCTTCGCCAAGTAAAGATTG+CGG | 0.731180 | 1.1:+59685331 | None:intergenic |
| GATTCAAATAGTGAACACGG+TGG | 0.855909 | 1.1:-59684066 | MS.gene69778:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 59683618 | 59691707 | 59683618 | ID=MS.gene69778 |
| chr1.1 | mRNA | 59683618 | 59691707 | 59683618 | ID=MS.gene69778.t1;Parent=MS.gene69778 |
| chr1.1 | exon | 59691692 | 59691707 | 59691692 | ID=MS.gene69778.t1.exon1;Parent=MS.gene69778.t1 |
| chr1.1 | CDS | 59691692 | 59691707 | 59691692 | ID=cds.MS.gene69778.t1;Parent=MS.gene69778.t1 |
| chr1.1 | exon | 59691578 | 59691614 | 59691578 | ID=MS.gene69778.t1.exon2;Parent=MS.gene69778.t1 |
| chr1.1 | CDS | 59691578 | 59691614 | 59691578 | ID=cds.MS.gene69778.t1;Parent=MS.gene69778.t1 |
| chr1.1 | exon | 59690636 | 59690766 | 59690636 | ID=MS.gene69778.t1.exon3;Parent=MS.gene69778.t1 |
| chr1.1 | CDS | 59690636 | 59690766 | 59690636 | ID=cds.MS.gene69778.t1;Parent=MS.gene69778.t1 |
| chr1.1 | exon | 59690398 | 59690502 | 59690398 | ID=MS.gene69778.t1.exon4;Parent=MS.gene69778.t1 |
| chr1.1 | CDS | 59690398 | 59690502 | 59690398 | ID=cds.MS.gene69778.t1;Parent=MS.gene69778.t1 |
| chr1.1 | exon | 59690193 | 59690301 | 59690193 | ID=MS.gene69778.t1.exon5;Parent=MS.gene69778.t1 |
| chr1.1 | CDS | 59690193 | 59690301 | 59690193 | ID=cds.MS.gene69778.t1;Parent=MS.gene69778.t1 |
| chr1.1 | exon | 59689863 | 59689996 | 59689863 | ID=MS.gene69778.t1.exon6;Parent=MS.gene69778.t1 |
| chr1.1 | CDS | 59689863 | 59689996 | 59689863 | ID=cds.MS.gene69778.t1;Parent=MS.gene69778.t1 |
| chr1.1 | exon | 59689195 | 59689334 | 59689195 | ID=MS.gene69778.t1.exon7;Parent=MS.gene69778.t1 |
| chr1.1 | CDS | 59689195 | 59689334 | 59689195 | ID=cds.MS.gene69778.t1;Parent=MS.gene69778.t1 |
| chr1.1 | exon | 59688458 | 59688508 | 59688458 | ID=MS.gene69778.t1.exon8;Parent=MS.gene69778.t1 |
| chr1.1 | CDS | 59688458 | 59688508 | 59688458 | ID=cds.MS.gene69778.t1;Parent=MS.gene69778.t1 |
| chr1.1 | exon | 59688290 | 59688372 | 59688290 | ID=MS.gene69778.t1.exon9;Parent=MS.gene69778.t1 |
| chr1.1 | CDS | 59688290 | 59688372 | 59688290 | ID=cds.MS.gene69778.t1;Parent=MS.gene69778.t1 |
| chr1.1 | exon | 59688135 | 59688189 | 59688135 | ID=MS.gene69778.t1.exon10;Parent=MS.gene69778.t1 |
| chr1.1 | CDS | 59688135 | 59688189 | 59688135 | ID=cds.MS.gene69778.t1;Parent=MS.gene69778.t1 |
| chr1.1 | exon | 59687928 | 59688042 | 59687928 | ID=MS.gene69778.t1.exon11;Parent=MS.gene69778.t1 |
| chr1.1 | CDS | 59687928 | 59688042 | 59687928 | ID=cds.MS.gene69778.t1;Parent=MS.gene69778.t1 |
| chr1.1 | exon | 59685623 | 59686100 | 59685623 | ID=MS.gene69778.t1.exon12;Parent=MS.gene69778.t1 |
| chr1.1 | CDS | 59685623 | 59686100 | 59685623 | ID=cds.MS.gene69778.t1;Parent=MS.gene69778.t1 |
| chr1.1 | exon | 59685332 | 59685545 | 59685332 | ID=MS.gene69778.t1.exon13;Parent=MS.gene69778.t1 |
| chr1.1 | CDS | 59685332 | 59685545 | 59685332 | ID=cds.MS.gene69778.t1;Parent=MS.gene69778.t1 |
| chr1.1 | exon | 59685169 | 59685239 | 59685169 | ID=MS.gene69778.t1.exon14;Parent=MS.gene69778.t1 |
| chr1.1 | CDS | 59685169 | 59685239 | 59685169 | ID=cds.MS.gene69778.t1;Parent=MS.gene69778.t1 |
| chr1.1 | exon | 59684781 | 59684949 | 59684781 | ID=MS.gene69778.t1.exon15;Parent=MS.gene69778.t1 |
| chr1.1 | CDS | 59684781 | 59684949 | 59684781 | ID=cds.MS.gene69778.t1;Parent=MS.gene69778.t1 |
| chr1.1 | exon | 59684544 | 59684676 | 59684544 | ID=MS.gene69778.t1.exon16;Parent=MS.gene69778.t1 |
| chr1.1 | CDS | 59684544 | 59684676 | 59684544 | ID=cds.MS.gene69778.t1;Parent=MS.gene69778.t1 |
| chr1.1 | exon | 59683618 | 59684312 | 59683618 | ID=MS.gene69778.t1.exon17;Parent=MS.gene69778.t1 |
| chr1.1 | CDS | 59683618 | 59684312 | 59683618 | ID=cds.MS.gene69778.t1;Parent=MS.gene69778.t1 |
| Gene Sequence |
| Protein sequence |
