Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43970.t1 | RHN80631.1 | 97 | 964 | 27 | 2 | 1 | 964 | 33 | 994 | 0.00E+00 | 1694.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43970.t1 | Q8CGC6 | 31.5 | 957 | 431 | 24 | 23 | 964 | 4 | 750 | 5.1e-54 | 214.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43970.t1 | G7I6T9 | 97.0 | 964 | 27 | 2 | 1 | 964 | 1 | 962 | 0.0e+00 | 1694.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene43970 | 0.807073 | 6.04E-50 | -1.69E-46 |
| MS.gene049254 | MS.gene43970 | 0.830651 | 2.60E-55 | -1.69E-46 |
| MS.gene049441 | MS.gene43970 | 0.810548 | 1.09E-50 | -1.69E-46 |
| MS.gene049666 | MS.gene43970 | 0.827726 | 1.33E-54 | -1.69E-46 |
| MS.gene049711 | MS.gene43970 | 0.805289 | 1.43E-49 | -1.69E-46 |
| MS.gene049824 | MS.gene43970 | 0.853936 | 1.72E-61 | -1.69E-46 |
| MS.gene049825 | MS.gene43970 | 0.833807 | 4.31E-56 | -1.69E-46 |
| MS.gene049850 | MS.gene43970 | 0.816912 | 4.33E-52 | -1.69E-46 |
| MS.gene049873 | MS.gene43970 | 0.831474 | 1.64E-55 | -1.69E-46 |
| MS.gene050026 | MS.gene43970 | 0.819007 | 1.46E-52 | -1.69E-46 |
| MS.gene050201 | MS.gene43970 | 0.807651 | 4.55E-50 | -1.69E-46 |
| MS.gene050355 | MS.gene43970 | 0.800347 | 1.50E-48 | -1.69E-46 |
| MS.gene050559 | MS.gene43970 | 0.822974 | 1.78E-53 | -1.69E-46 |
| MS.gene050561 | MS.gene43970 | 0.820717 | 5.92E-53 | -1.69E-46 |
| MS.gene050562 | MS.gene43970 | 0.818951 | 1.50E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene43970 | 0.826203 | 3.09E-54 | -1.69E-46 |
| MS.gene051279 | MS.gene43970 | 0.814787 | 1.29E-51 | -1.69E-46 |
| MS.gene051700 | MS.gene43970 | 0.812352 | 4.43E-51 | -1.69E-46 |
| MS.gene051719 | MS.gene43970 | 0.832075 | 1.16E-55 | -1.69E-46 |
| MS.gene051720 | MS.gene43970 | 0.8272 | 1.78E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene43970 | 0.854125 | 1.52E-61 | -1.69E-46 |
| MS.gene052133 | MS.gene43970 | 0.807515 | 4.87E-50 | -1.69E-46 |
| MS.gene052239 | MS.gene43970 | -0.802714 | 4.92E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene43970 | 0.829832 | 4.13E-55 | -1.69E-46 |
| MS.gene052584 | MS.gene43970 | 0.846817 | 1.71E-59 | -1.69E-46 |
| MS.gene053122 | MS.gene43970 | 0.825109 | 5.61E-54 | -1.69E-46 |
| MS.gene053144 | MS.gene43970 | 0.826062 | 3.33E-54 | -1.69E-46 |
| MS.gene053226 | MS.gene43970 | 0.855585 | 5.72E-62 | -1.69E-46 |
| MS.gene053599 | MS.gene43970 | 0.807039 | 6.14E-50 | -1.69E-46 |
| MS.gene05365 | MS.gene43970 | 0.807587 | 4.70E-50 | -1.69E-46 |
| MS.gene053883 | MS.gene43970 | 0.832325 | 1.01E-55 | -1.69E-46 |
| MS.gene053998 | MS.gene43970 | 0.810898 | 9.17E-51 | -1.69E-46 |
| MS.gene05423 | MS.gene43970 | 0.807007 | 6.24E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene43970 | 0.833447 | 5.31E-56 | -1.69E-46 |
| MS.gene054651 | MS.gene43970 | 0.800688 | 1.28E-48 | -1.69E-46 |
| MS.gene054967 | MS.gene43970 | 0.804468 | 2.13E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene43970 | 0.83124 | 1.87E-55 | -1.69E-46 |
| MS.gene055466 | MS.gene43970 | 0.835572 | 1.55E-56 | -1.69E-46 |
| MS.gene055468 | MS.gene43970 | 0.819511 | 1.12E-52 | -1.69E-46 |
| MS.gene055537 | MS.gene43970 | 0.801306 | 9.58E-49 | -1.69E-46 |
| MS.gene055580 | MS.gene43970 | -0.834505 | 2.88E-56 | -1.69E-46 |
| MS.gene055694 | MS.gene43970 | 0.80196 | 7.04E-49 | -1.69E-46 |
| MS.gene055778 | MS.gene43970 | 0.816907 | 4.34E-52 | -1.69E-46 |
| MS.gene055808 | MS.gene43970 | 0.832835 | 7.54E-56 | -1.69E-46 |
| MS.gene056043 | MS.gene43970 | -0.811898 | 5.56E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene43970 | 0.833344 | 5.63E-56 | -1.69E-46 |
| MS.gene056091 | MS.gene43970 | 0.818751 | 1.66E-52 | -1.69E-46 |
| MS.gene056308 | MS.gene43970 | 0.810019 | 1.42E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene43970 | 0.802653 | 5.07E-49 | -1.69E-46 |
| MS.gene057314 | MS.gene43970 | 0.828901 | 6.95E-55 | -1.69E-46 |
| MS.gene057444 | MS.gene43970 | 0.826936 | 2.06E-54 | -1.69E-46 |
| MS.gene057915 | MS.gene43970 | 0.812835 | 3.47E-51 | -1.69E-46 |
| MS.gene058037 | MS.gene43970 | 0.817396 | 3.37E-52 | -1.69E-46 |
| MS.gene058625 | MS.gene43970 | 0.830335 | 3.11E-55 | -1.69E-46 |
| MS.gene058668 | MS.gene43970 | 0.809788 | 1.59E-50 | -1.69E-46 |
| MS.gene058829 | MS.gene43970 | 0.802246 | 6.14E-49 | -1.69E-46 |
| MS.gene058908 | MS.gene43970 | 0.809163 | 2.17E-50 | -1.69E-46 |
| MS.gene059015 | MS.gene43970 | 0.819369 | 1.20E-52 | -1.69E-46 |
| MS.gene059084 | MS.gene43970 | 0.821004 | 5.08E-53 | -1.69E-46 |
| MS.gene059272 | MS.gene43970 | 0.810827 | 9.50E-51 | -1.69E-46 |
| MS.gene05954 | MS.gene43970 | 0.823862 | 1.10E-53 | -1.69E-46 |
| MS.gene059625 | MS.gene43970 | 0.876912 | 9.58E-69 | -1.69E-46 |
| MS.gene059935 | MS.gene43970 | 0.804027 | 2.63E-49 | -1.69E-46 |
| MS.gene060134 | MS.gene43970 | 0.803409 | 3.54E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene43970 | 0.838869 | 2.23E-57 | -1.69E-46 |
| MS.gene060519 | MS.gene43970 | 0.811754 | 5.98E-51 | -1.69E-46 |
| MS.gene060521 | MS.gene43970 | 0.815887 | 7.34E-52 | -1.69E-46 |
| MS.gene060587 | MS.gene43970 | 0.816642 | 4.98E-52 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43970.t1 | MTR_1g080390 | 97.822 | 964 | 19 | 2 | 1 | 964 | 1 | 962 | 0.0 | 1927 |
| MS.gene43970.t1 | MTR_8g031560 | 36.842 | 76 | 48 | 0 | 288 | 363 | 203 | 278 | 8.49e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43970.t1 | AT2G21440 | 47.783 | 1015 | 424 | 19 | 24 | 964 | 21 | 1003 | 0.0 | 807 |
Find 204 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCTTCCTTTGGTTCTTT+TGG | 0.108090 | 1.3:+56864483 | None:intergenic |
| TCTGTTTCCTTGGAAGTTTC+AGG | 0.151548 | 1.3:+56859861 | None:intergenic |
| TGCTTCTGGGATGGGTATTT+TGG | 0.157301 | 1.3:-56859557 | MS.gene43970:CDS |
| CGTTACGAAGTTTCAATTTC+TGG | 0.157364 | 1.3:+56858335 | None:intergenic |
| TTAACAGTTTCCTTGGATTT+TGG | 0.171316 | 1.3:+56859939 | None:intergenic |
| ACTGAATCTTTGTTCTTCTT+TGG | 0.190926 | 1.3:+56857848 | None:intergenic |
| GGGGTCCCCTTTCTGTCTTT+TGG | 0.224958 | 1.3:+56858102 | None:intergenic |
| TCAACTGCCAATACTGCTTC+TGG | 0.228699 | 1.3:-56859571 | MS.gene43970:CDS |
| AAGAAAGAAGACGCAGTATT+TGG | 0.233382 | 1.3:-56857926 | MS.gene43970:CDS |
| GGTAAGGGGTAGACCATTAA+AGG | 0.238442 | 1.3:-56859536 | MS.gene43970:CDS |
| GTTGCTAGAACTGTTATATT+TGG | 0.244405 | 1.3:-56864060 | MS.gene43970:CDS |
| GTAATTTACCACCATGATTC+TGG | 0.249095 | 1.3:+56857996 | None:intergenic |
| AGAGCCTTTAAAACCTTTAA+TGG | 0.253378 | 1.3:+56859523 | None:intergenic |
| AAACTCAATGGATTGAAGTT+TGG | 0.256721 | 1.3:-56862098 | MS.gene43970:CDS |
| AGGCCAAAGAAAATGAAATA+AGG | 0.273524 | 1.3:-56862439 | MS.gene43970:CDS |
| AACTCAATGGATTGAAGTTT+GGG | 0.302039 | 1.3:-56862097 | MS.gene43970:CDS |
| TTTCATCTGCGGGGACTGTA+TGG | 0.307723 | 1.3:-56862409 | MS.gene43970:CDS |
| CACTTCGGTATTTGTACTCT+TGG | 0.308629 | 1.3:+56858081 | None:intergenic |
| TCCACAATTGGCCGATGTTC+AGG | 0.314138 | 1.3:+56858376 | None:intergenic |
| TTCCTTTCCGAAGAAGCTTT+TGG | 0.331812 | 1.3:+56858040 | None:intergenic |
| TAACCAACCTGCCGAATTAC+AGG | 0.333219 | 1.3:+56858882 | None:intergenic |
| TCTACACAACATCGTGGTTT+TGG | 0.333522 | 1.3:-56865671 | MS.gene43970:CDS |
| ACTTCGGTATTTGTACTCTT+GGG | 0.335882 | 1.3:+56858082 | None:intergenic |
| ATAGTTCCATTGACAGTAAT+AGG | 0.336958 | 1.3:-56857961 | MS.gene43970:CDS |
| TGTCAGAAACCTTCCTTTCA+AGG | 0.342388 | 1.3:-56862544 | MS.gene43970:intron |
| CAACCGCAACCTTCTTCCTT+TGG | 0.344450 | 1.3:+56864474 | None:intergenic |
| TTTCATAACAAAATTATGAT+TGG | 0.345149 | 1.3:+56857702 | None:intergenic |
| CAAATCATCTTCTGTTTCCT+TGG | 0.348953 | 1.3:+56859851 | None:intergenic |
| CACCATGATTCTGGCCATCT+TGG | 0.351076 | 1.3:+56858005 | None:intergenic |
| GTCGTCTCATAGCTGTTGAT+TGG | 0.358840 | 1.3:-56862073 | MS.gene43970:CDS |
| GATAAAGACAGCGGATTGTC+TGG | 0.361981 | 1.3:-56864528 | MS.gene43970:CDS |
| GTTATTTACAGATTCGTCTT+TGG | 0.369847 | 1.3:+56859992 | None:intergenic |
| AAGCAGGGGAAAAGGTTTCT+AGG | 0.374787 | 1.3:-56857877 | MS.gene43970:CDS |
| TGCACCCTTAACAGTTTCCT+TGG | 0.378021 | 1.3:+56859932 | None:intergenic |
| CTGTTTCATGGTTACACAAA+AGG | 0.379270 | 1.3:-56865771 | MS.gene43970:CDS |
| GACAGTAATAGGAAAATATC+AGG | 0.382523 | 1.3:-56857950 | MS.gene43970:CDS |
| CTATTAAGCATCCCCTTTCA+AGG | 0.383007 | 1.3:-56863969 | MS.gene43970:CDS |
| ACCATGAAACAGCGTCTAAC+AGG | 0.384092 | 1.3:+56865782 | None:intergenic |
| AGATAGGAGGAGGAACTGTT+TGG | 0.387233 | 1.3:-56863303 | MS.gene43970:CDS |
| CTGAGAGTTAGTGAAGGAAT+AGG | 0.388327 | 1.3:+56865926 | None:intergenic |
| AGAACCCTTGTGTGAGAACT+TGG | 0.390972 | 1.3:+56857775 | None:intergenic |
| AAAATCCAAGGAAACTGTTA+AGG | 0.392787 | 1.3:-56859937 | MS.gene43970:CDS |
| AAAGGCTCTGGACAAGAAAT+CGG | 0.400061 | 1.3:-56859509 | MS.gene43970:CDS |
| CCGTGTTCACTATTTGAATC+TGG | 0.400337 | 1.3:+56858166 | None:intergenic |
| GCTAGAACTGTTATATTTGG+TGG | 0.404207 | 1.3:-56864057 | MS.gene43970:CDS |
| ACCTGTTAGACGCTGTTTCA+TGG | 0.405122 | 1.3:-56865783 | MS.gene43970:CDS |
| CACCGCCAAGCCAGAGAAAT+CGG | 0.405483 | 1.3:-56864003 | MS.gene43970:CDS |
| ATCTAATTCAAAGGGAAGAT+TGG | 0.406524 | 1.3:+56859809 | None:intergenic |
| GAACAAACTTTCAGTGAAGT+TGG | 0.409004 | 1.3:-56865806 | MS.gene43970:CDS |
| AAGCTTCCATTTCTGAGTCT+TGG | 0.414414 | 1.3:+56862569 | None:intergenic |
| AGACCACCGCAATCTTTACT+TGG | 0.416144 | 1.3:-56859446 | MS.gene43970:CDS |
| TCCTGTGTGCAGTCTTTCAA+AGG | 0.416759 | 1.3:-56862266 | MS.gene43970:intron |
| AAACCGTTGCTTCACTTCTT+CGG | 0.420518 | 1.3:+56859785 | None:intergenic |
| TTAGAAACAAAGAGTGTTAA+CGG | 0.425518 | 1.3:+56865954 | None:intergenic |
| TGCGTAAACTCCCGCATTGT+CGG | 0.425962 | 1.3:+56858249 | None:intergenic |
| TGAGCTGAAGAACGGTTCAT+TGG | 0.431497 | 1.3:-56864800 | MS.gene43970:CDS |
| GGCCAAAGAAAATGAAATAA+GGG | 0.433746 | 1.3:-56862438 | MS.gene43970:CDS |
| AGAAAGTCCAAAAGCTTCTT+CGG | 0.435552 | 1.3:-56858047 | MS.gene43970:CDS |
| CCAAGCAAATACCTGTAATT+CGG | 0.436673 | 1.3:-56858893 | MS.gene43970:CDS |
| TTGGTCACTTGGTGGAGAAC+AGG | 0.437156 | 1.3:+56859732 | None:intergenic |
| GCTGAAACACCTTCGGCAGC+TGG | 0.445268 | 1.3:+56859302 | None:intergenic |
| CTGAAGATCATTCCTTGAAA+GGG | 0.446240 | 1.3:+56863957 | None:intergenic |
| ACACACAGTGCCGATTTCTC+TGG | 0.447857 | 1.3:+56863993 | None:intergenic |
| CAGGCGATTCGAAAACTCAA+TGG | 0.448862 | 1.3:-56862110 | MS.gene43970:CDS |
| TGCCGATTTCTCTGGCTTGG+CGG | 0.449281 | 1.3:+56864001 | None:intergenic |
| CAACTGCCAATACTGCTTCT+GGG | 0.451408 | 1.3:-56859570 | MS.gene43970:CDS |
| AGAGTTCTTAACAATAATCC+TGG | 0.454597 | 1.3:-56858652 | MS.gene43970:intron |
| AATCTAAACAGCTTAGGAAA+TGG | 0.456031 | 1.3:-56857727 | MS.gene43970:CDS |
| TGAGAGTTAGTGAAGGAATA+GGG | 0.456317 | 1.3:+56865927 | None:intergenic |
| CCTGTGTGCAGTCTTTCAAA+GGG | 0.458416 | 1.3:-56862265 | MS.gene43970:intron |
| TGAACCGTTCTTCAGCTCAA+TGG | 0.460449 | 1.3:+56864804 | None:intergenic |
| GGCTTGGCGGTGAACATCTT+CGG | 0.460580 | 1.3:+56864014 | None:intergenic |
| CTAGGACATACTTGGTCACT+TGG | 0.461965 | 1.3:+56859721 | None:intergenic |
| GCGTAAACTCCCGCATTGTC+GGG | 0.462564 | 1.3:+56858250 | None:intergenic |
| GCCAATACTGCTTCTGGGAT+GGG | 0.465705 | 1.3:-56859565 | MS.gene43970:CDS |
| TCAAGAGCAAACTCCACAAT+TGG | 0.466178 | 1.3:+56858364 | None:intergenic |
| TAACGGCGGACATTGTTTAA+CGG | 0.467270 | 1.3:+56865971 | None:intergenic |
| ATCGGCTCATGACAAGGAAC+AGG | 0.468605 | 1.3:-56859491 | MS.gene43970:CDS |
| ACCCATCCCAGAAGCAGTAT+TGG | 0.471074 | 1.3:+56859564 | None:intergenic |
| TTTGGGCACGCCAACTTGGT+GGG | 0.473129 | 1.3:-56863285 | MS.gene43970:CDS |
| CCAAGAACAAGCAGGGGAAA+AGG | 0.475052 | 1.3:-56857885 | MS.gene43970:CDS |
| CGTTCTTCAGCTCAATGGCT+TGG | 0.475932 | 1.3:+56864809 | None:intergenic |
| TAGGAGGGACTTATTCTTGA+CGG | 0.477564 | 1.3:-56859329 | MS.gene43970:CDS |
| TGCAGGCGTCCACGAGGGAC+TGG | 0.480915 | 1.3:-56859637 | MS.gene43970:intron |
| GGCAAATCCAAAAGACAGAA+AGG | 0.484725 | 1.3:-56858109 | MS.gene43970:CDS |
| TACAGATTCGTCTTTGGCAG+AGG | 0.486047 | 1.3:+56859998 | None:intergenic |
| TGCCAATACTGCTTCTGGGA+TGG | 0.486395 | 1.3:-56859566 | MS.gene43970:CDS |
| GTTTGGGCACGCCAACTTGG+TGG | 0.487001 | 1.3:-56863286 | MS.gene43970:CDS |
| CGAAGATCGAAACCGGATCA+AGG | 0.488053 | 1.3:-56864721 | MS.gene43970:intron |
| CAGTGCCGATTTCTCTGGCT+TGG | 0.490360 | 1.3:+56863998 | None:intergenic |
| AGCATCAATCAACCTTGATC+CGG | 0.491692 | 1.3:+56864709 | None:intergenic |
| AATGATAAACCCGACAATGC+GGG | 0.495453 | 1.3:-56858259 | MS.gene43970:CDS |
| CTATTCCTTCACTAACTCTC+AGG | 0.495586 | 1.3:-56865925 | MS.gene43970:intron |
| GATTTCTTTAGGACAACAAA+AGG | 0.498067 | 1.3:-56860198 | MS.gene43970:intron |
| TCGTCTCATAGCTGTTGATT+GGG | 0.499678 | 1.3:-56862072 | MS.gene43970:CDS |
| TGTTTCATGGTTACACAAAA+GGG | 0.499866 | 1.3:-56865770 | MS.gene43970:intron |
| TCATTGACCACAGAAACCTT+TGG | 0.500631 | 1.3:-56858400 | MS.gene43970:intron |
| TTCTCACACAAGGGTTCTCA+AGG | 0.501028 | 1.3:-56857770 | MS.gene43970:CDS |
| ACGGTTCATTGGTTGGTGAC+CGG | 0.501056 | 1.3:-56864789 | MS.gene43970:CDS |
| AGGGAGCCAAGACTCAGAAA+TGG | 0.503890 | 1.3:-56862575 | MS.gene43970:CDS |
| GATAGGAGGAGGAACTGTTT+GGG | 0.504322 | 1.3:-56863302 | MS.gene43970:CDS |
| AGAAATATCTGAAACCTTGT+CGG | 0.504739 | 1.3:+56859887 | None:intergenic |
| GCAAATCCAAAAGACAGAAA+GGG | 0.507205 | 1.3:-56858108 | MS.gene43970:CDS |
| TGAAAATCGAAGATCGAAAC+CGG | 0.507609 | 1.3:-56864728 | MS.gene43970:CDS |
| GGGAAAAGGTTTCTAGGAAA+AGG | 0.509364 | 1.3:-56857871 | MS.gene43970:CDS |
| CCGAATTACAGGTATTTGCT+TGG | 0.511846 | 1.3:+56858893 | None:intergenic |
| TCTTCGGTATCTAATTCAAA+GGG | 0.513395 | 1.3:+56859801 | None:intergenic |
| GCTGAAGATCATTCCTTGAA+AGG | 0.515929 | 1.3:+56863956 | None:intergenic |
| CACGGTGGTAGAGTGCCAAA+TGG | 0.516262 | 1.3:-56858148 | MS.gene43970:CDS |
| TCAACAGATCGAACCTTGAA+AGG | 0.517773 | 1.3:+56862531 | None:intergenic |
| TTCATCTGCGGGGACTGTAT+GGG | 0.521165 | 1.3:-56862408 | MS.gene43970:CDS |
| AAGACGCAGTATTTGGAAAG+AGG | 0.521867 | 1.3:-56857919 | MS.gene43970:CDS |
| TTCTTCGGTATCTAATTCAA+AGG | 0.523243 | 1.3:+56859800 | None:intergenic |
| CAGATCGAACCTTGAAAGGA+AGG | 0.524767 | 1.3:+56862535 | None:intergenic |
| GAAATATTTATAGTTTGGAA+AGG | 0.525585 | 1.3:-56859049 | MS.gene43970:intron |
| ACTGTTTGGGCACGCCAACT+TGG | 0.526145 | 1.3:-56863289 | MS.gene43970:CDS |
| GAACAAAGATTCAGTAGGGA+AGG | 0.527716 | 1.3:-56857840 | MS.gene43970:CDS |
| TCCTGAACATCGGCCAATTG+TGG | 0.528514 | 1.3:-56858377 | MS.gene43970:CDS |
| ATCAGTGGCTGAAACACCTT+CGG | 0.530794 | 1.3:+56859295 | None:intergenic |
| AAATCCAAGGAAACTGTTAA+GGG | 0.531440 | 1.3:-56859936 | MS.gene43970:CDS |
| CTTCGGTATTTGTACTCTTG+GGG | 0.533027 | 1.3:+56858083 | None:intergenic |
| CCAAAAGAACCAAAGGAAGA+AGG | 0.533227 | 1.3:-56864483 | MS.gene43970:intron |
| AAGAAGAACAAAGATTCAGT+AGG | 0.534680 | 1.3:-56857845 | MS.gene43970:CDS |
| GATGCAATAGAGGGCAATGA+AGG | 0.535517 | 1.3:-56864576 | MS.gene43970:intron |
| AAATTACCTTCCTCTGAAGC+AGG | 0.535871 | 1.3:+56862008 | None:intergenic |
| TGCATTATCAGCTGCTTCCG+CGG | 0.535875 | 1.3:+56859597 | None:intergenic |
| ATGCATAACCAAGAACAAGC+AGG | 0.537887 | 1.3:-56857893 | MS.gene43970:CDS |
| TTCCCAGGTCTGCTGCAAGA+AGG | 0.538150 | 1.3:-56863406 | MS.gene43970:intron |
| GCAAATACCTGTAATTCGGC+AGG | 0.538494 | 1.3:-56858889 | MS.gene43970:intron |
| AACCAAGATGGCCAGAATCA+TGG | 0.540517 | 1.3:-56858007 | MS.gene43970:CDS |
| TTCTAAGCCTGAAACTTCCA+AGG | 0.542108 | 1.3:-56859868 | MS.gene43970:CDS |
| GATGCTCCTGCTTCAGAGGA+AGG | 0.546927 | 1.3:-56862014 | MS.gene43970:intron |
| ACTGACAAAGAATCTGATCA+AGG | 0.547224 | 1.3:-56860128 | MS.gene43970:CDS |
| TGGCCGATGTTCAGGACCAA+AGG | 0.547311 | 1.3:+56858384 | None:intergenic |
| GGACATACTTGGTCACTTGG+TGG | 0.548184 | 1.3:+56859724 | None:intergenic |
| TTGTAATGACACAGCAGATG+AGG | 0.550527 | 1.3:-56864301 | MS.gene43970:CDS |
| AAAGAACAAGCCAAAATCCA+AGG | 0.552898 | 1.3:-56859949 | MS.gene43970:CDS |
| CAATGTTGCAACAGAAGCAC+GGG | 0.556088 | 1.3:+56863336 | None:intergenic |
| TTGGGCACGCCAACTTGGTG+GGG | 0.556141 | 1.3:-56863284 | MS.gene43970:CDS |
| TGGTCTCGTGAATTCTGCTA+TGG | 0.558745 | 1.3:-56864037 | MS.gene43970:CDS |
| GGCACGCCAACTTGGTGGGG+AGG | 0.559247 | 1.3:-56863281 | MS.gene43970:intron |
| TTCAGTTCCAAAAGAACCAA+AGG | 0.560178 | 1.3:-56864490 | MS.gene43970:CDS |
| TAATGATGCTCCTGCTTCAG+AGG | 0.561340 | 1.3:-56862018 | MS.gene43970:CDS |
| ATTCAAGAAAAGCGACTCCA+CGG | 0.563574 | 1.3:+56858707 | None:intergenic |
| CTGAAGAACGGTTCATTGGT+TGG | 0.563589 | 1.3:-56864796 | MS.gene43970:CDS |
| CAAGAAATCGGCTCATGACA+AGG | 0.564214 | 1.3:-56859497 | MS.gene43970:CDS |
| ACTTTACCTCCCCACCAAGT+TGG | 0.564510 | 1.3:+56863275 | None:intergenic |
| GTCCAAAAGCTTCTTCGGAA+AGG | 0.566021 | 1.3:-56858042 | MS.gene43970:CDS |
| AGAAGAACAAAGATTCAGTA+GGG | 0.570029 | 1.3:-56857844 | MS.gene43970:CDS |
| CAAATCCAAAAGACAGAAAG+GGG | 0.571325 | 1.3:-56858107 | MS.gene43970:CDS |
| CATGGTGGTAAATTACATGA+AGG | 0.571741 | 1.3:-56857989 | MS.gene43970:CDS |
| GAAAGATGGCAGGAAAGGAA+AGG | 0.571880 | 1.3:-56858752 | MS.gene43970:CDS |
| TGCATAACCAAGAACAAGCA+GGG | 0.575155 | 1.3:-56857892 | MS.gene43970:CDS |
| TGTAATGACACAGCAGATGA+GGG | 0.575251 | 1.3:-56864300 | MS.gene43970:CDS |
| TGACAAACCAGCAAAAGACT+TGG | 0.576336 | 1.3:-56858191 | MS.gene43970:CDS |
| GCAATGTTGCAACAGAAGCA+CGG | 0.579403 | 1.3:+56863335 | None:intergenic |
| GACGGAACTCCAGCTGCCGA+AGG | 0.579556 | 1.3:-56859311 | MS.gene43970:CDS |
| TTCTTTCGATGAGATCACTT+CGG | 0.585525 | 1.3:+56858066 | None:intergenic |
| CCGCAATCTTTACTTGGCGA+AGG | 0.589662 | 1.3:-56859440 | MS.gene43970:intron |
| AAAGCTACAGTATCAGCAGC+GGG | 0.590881 | 1.3:-56858311 | MS.gene43970:CDS |
| TTCAAGAAAAGCGACTCCAC+GGG | 0.595349 | 1.3:+56858708 | None:intergenic |
| TTGTCAAAATCATCGTCAGA+AGG | 0.599134 | 1.3:+56860065 | None:intergenic |
| CAAAAGGTGACAGATGAAGA+TGG | 0.601633 | 1.3:-56860182 | MS.gene43970:CDS |
| TACCCTGTGTCGGACTTCTG+TGG | 0.606080 | 1.3:+56862374 | None:intergenic |
| TAATGACACAGCAGATGAGG+GGG | 0.608560 | 1.3:-56864298 | MS.gene43970:CDS |
| ATTCCACAGAAGTCCGACAC+AGG | 0.608649 | 1.3:-56862377 | MS.gene43970:CDS |
| AGGAATGATCTTCAGCAGCA+TGG | 0.610357 | 1.3:-56863949 | MS.gene43970:intron |
| AAGGAATATATACCCTGTGT+CGG | 0.616888 | 1.3:+56862364 | None:intergenic |
| AAGGGTTCTCAAGGAAATGA+CGG | 0.619296 | 1.3:-56857761 | MS.gene43970:CDS |
| CAGCAGCGGGCTCCTCACAA+TGG | 0.623421 | 1.3:-56858298 | MS.gene43970:CDS |
| TAGATCCAAGTTCTCACACA+AGG | 0.623451 | 1.3:-56857780 | MS.gene43970:CDS |
| TTTCTGCTGTTGCCATTGTG+AGG | 0.623452 | 1.3:+56858286 | None:intergenic |
| GAGTACCTGAGAGTTAGTGA+AGG | 0.624188 | 1.3:+56865920 | None:intergenic |
| TGAAGATCATTCCTTGAAAG+GGG | 0.624383 | 1.3:+56863958 | None:intergenic |
| CAAGCCATTGAGCTGAAGAA+CGG | 0.627871 | 1.3:-56864808 | MS.gene43970:CDS |
| ATCTGCGGGGACTGTATGGG+AGG | 0.628989 | 1.3:-56862405 | MS.gene43970:CDS |
| AAATGATAAACCCGACAATG+CGG | 0.629902 | 1.3:-56858260 | MS.gene43970:CDS |
| CCAAATGGAAAATCTCCTCA+AGG | 0.629918 | 1.3:-56858133 | MS.gene43970:CDS |
| CCAGATTCAAATAGTGAACA+CGG | 0.633933 | 1.3:-56858166 | MS.gene43970:CDS |
| AAACCTTTGGTCCTGAACAT+CGG | 0.642171 | 1.3:-56858387 | MS.gene43970:CDS |
| GTAATGACACAGCAGATGAG+GGG | 0.644262 | 1.3:-56864299 | MS.gene43970:CDS |
| CAAGAACAGCAGTATTCCCG+TGG | 0.650331 | 1.3:-56858724 | MS.gene43970:CDS |
| AGATGGTAGTACTACTACTG+AGG | 0.654593 | 1.3:-56860165 | MS.gene43970:CDS |
| ATACCGAAGAAGTGAAGCAA+CGG | 0.656518 | 1.3:-56859788 | MS.gene43970:CDS |
| AATGCGGGAGTTTACGCACA+TGG | 0.658005 | 1.3:-56858244 | MS.gene43970:CDS |
| TAGTGATATTGATAGTGTTG+TGG | 0.658825 | 1.3:-56860099 | MS.gene43970:CDS |
| CTCAATGCAGGCGTCCACGA+GGG | 0.661595 | 1.3:-56859642 | MS.gene43970:intron |
| TGATATTGATAGTGTTGTGG+AGG | 0.663472 | 1.3:-56860096 | MS.gene43970:CDS |
| TTCCACAGAAGTCCGACACA+GGG | 0.667711 | 1.3:-56862376 | MS.gene43970:intron |
| TTAAGAAAACCAGTCCCTCG+TGG | 0.669577 | 1.3:+56859628 | None:intergenic |
| ATGAAGGAAAATAGCGACGA+CGG | 0.674278 | 1.3:-56865996 | MS.gene43970:CDS |
| GCATAACCAAGAACAAGCAG+GGG | 0.676330 | 1.3:-56857891 | MS.gene43970:CDS |
| AACATCTAAAGAGTCCGACA+AGG | 0.679032 | 1.3:-56859901 | MS.gene43970:CDS |
| ACTCAATGCAGGCGTCCACG+AGG | 0.680693 | 1.3:-56859643 | MS.gene43970:intron |
| AAAAGCTACAGTATCAGCAG+CGG | 0.686433 | 1.3:-56858312 | MS.gene43970:CDS |
| AGATCCAAGTTCTCACACAA+GGG | 0.701976 | 1.3:-56857779 | MS.gene43970:CDS |
| CCTTCGCCAAGTAAAGATTG+CGG | 0.702722 | 1.3:+56859440 | None:intergenic |
| TCGCCAAGTAAAGATTGCGG+TGG | 0.704028 | 1.3:+56859443 | None:intergenic |
| TCAGGGTCTACACAACATCG+TGG | 0.720317 | 1.3:-56865677 | MS.gene43970:intron |
| AATGGAAAATCTCCTCAAGG+AGG | 0.725686 | 1.3:-56858130 | MS.gene43970:CDS |
| AATGACACAGCAGATGAGGG+GGG | 0.726717 | 1.3:-56864297 | MS.gene43970:CDS |
| CAAGATGGCCAGAATCATGG+TGG | 0.728758 | 1.3:-56858004 | MS.gene43970:CDS |
| GAAACAAAGAGTGTTAACGG+CGG | 0.786080 | 1.3:+56865957 | None:intergenic |
| GATTCAAATAGTGAACACGG+TGG | 0.855909 | 1.3:-56858163 | MS.gene43970:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 56857715 | 56866039 | 56857715 | ID=MS.gene43970 |
| chr1.3 | mRNA | 56857715 | 56866039 | 56857715 | ID=MS.gene43970.t1;Parent=MS.gene43970 |
| chr1.3 | exon | 56865926 | 56866039 | 56865926 | ID=MS.gene43970.t1.exon1;Parent=MS.gene43970.t1 |
| chr1.3 | CDS | 56865926 | 56866039 | 56865926 | ID=cds.MS.gene43970.t1;Parent=MS.gene43970.t1 |
| chr1.3 | exon | 56865771 | 56865831 | 56865771 | ID=MS.gene43970.t1.exon2;Parent=MS.gene43970.t1 |
| chr1.3 | CDS | 56865771 | 56865831 | 56865771 | ID=cds.MS.gene43970.t1;Parent=MS.gene43970.t1 |
| chr1.3 | exon | 56865659 | 56865695 | 56865659 | ID=MS.gene43970.t1.exon3;Parent=MS.gene43970.t1 |
| chr1.3 | CDS | 56865659 | 56865695 | 56865659 | ID=cds.MS.gene43970.t1;Parent=MS.gene43970.t1 |
| chr1.3 | exon | 56864722 | 56864852 | 56864722 | ID=MS.gene43970.t1.exon4;Parent=MS.gene43970.t1 |
| chr1.3 | CDS | 56864722 | 56864852 | 56864722 | ID=cds.MS.gene43970.t1;Parent=MS.gene43970.t1 |
| chr1.3 | exon | 56864484 | 56864588 | 56864484 | ID=MS.gene43970.t1.exon5;Parent=MS.gene43970.t1 |
| chr1.3 | CDS | 56864484 | 56864588 | 56864484 | ID=cds.MS.gene43970.t1;Parent=MS.gene43970.t1 |
| chr1.3 | exon | 56864279 | 56864387 | 56864279 | ID=MS.gene43970.t1.exon6;Parent=MS.gene43970.t1 |
| chr1.3 | CDS | 56864279 | 56864387 | 56864279 | ID=cds.MS.gene43970.t1;Parent=MS.gene43970.t1 |
| chr1.3 | exon | 56863950 | 56864083 | 56863950 | ID=MS.gene43970.t1.exon7;Parent=MS.gene43970.t1 |
| chr1.3 | CDS | 56863950 | 56864083 | 56863950 | ID=cds.MS.gene43970.t1;Parent=MS.gene43970.t1 |
| chr1.3 | exon | 56863282 | 56863421 | 56863282 | ID=MS.gene43970.t1.exon8;Parent=MS.gene43970.t1 |
| chr1.3 | CDS | 56863282 | 56863421 | 56863282 | ID=cds.MS.gene43970.t1;Parent=MS.gene43970.t1 |
| chr1.3 | exon | 56862545 | 56862595 | 56862545 | ID=MS.gene43970.t1.exon9;Parent=MS.gene43970.t1 |
| chr1.3 | CDS | 56862545 | 56862595 | 56862545 | ID=cds.MS.gene43970.t1;Parent=MS.gene43970.t1 |
| chr1.3 | exon | 56862377 | 56862459 | 56862377 | ID=MS.gene43970.t1.exon10;Parent=MS.gene43970.t1 |
| chr1.3 | CDS | 56862377 | 56862459 | 56862377 | ID=cds.MS.gene43970.t1;Parent=MS.gene43970.t1 |
| chr1.3 | exon | 56862222 | 56862276 | 56862222 | ID=MS.gene43970.t1.exon11;Parent=MS.gene43970.t1 |
| chr1.3 | CDS | 56862222 | 56862276 | 56862222 | ID=cds.MS.gene43970.t1;Parent=MS.gene43970.t1 |
| chr1.3 | exon | 56862015 | 56862129 | 56862015 | ID=MS.gene43970.t1.exon12;Parent=MS.gene43970.t1 |
| chr1.3 | CDS | 56862015 | 56862129 | 56862015 | ID=cds.MS.gene43970.t1;Parent=MS.gene43970.t1 |
| chr1.3 | exon | 56859732 | 56860209 | 56859732 | ID=MS.gene43970.t1.exon13;Parent=MS.gene43970.t1 |
| chr1.3 | CDS | 56859732 | 56860209 | 56859732 | ID=cds.MS.gene43970.t1;Parent=MS.gene43970.t1 |
| chr1.3 | exon | 56859441 | 56859654 | 56859441 | ID=MS.gene43970.t1.exon14;Parent=MS.gene43970.t1 |
| chr1.3 | CDS | 56859441 | 56859654 | 56859441 | ID=cds.MS.gene43970.t1;Parent=MS.gene43970.t1 |
| chr1.3 | exon | 56859278 | 56859348 | 56859278 | ID=MS.gene43970.t1.exon15;Parent=MS.gene43970.t1 |
| chr1.3 | CDS | 56859278 | 56859348 | 56859278 | ID=cds.MS.gene43970.t1;Parent=MS.gene43970.t1 |
| chr1.3 | exon | 56858890 | 56859058 | 56858890 | ID=MS.gene43970.t1.exon16;Parent=MS.gene43970.t1 |
| chr1.3 | CDS | 56858890 | 56859058 | 56858890 | ID=cds.MS.gene43970.t1;Parent=MS.gene43970.t1 |
| chr1.3 | exon | 56858653 | 56858785 | 56858653 | ID=MS.gene43970.t1.exon17;Parent=MS.gene43970.t1 |
| chr1.3 | CDS | 56858653 | 56858785 | 56858653 | ID=cds.MS.gene43970.t1;Parent=MS.gene43970.t1 |
| chr1.3 | exon | 56857715 | 56858409 | 56857715 | ID=MS.gene43970.t1.exon18;Parent=MS.gene43970.t1 |
| chr1.3 | CDS | 56857715 | 56858409 | 56857715 | ID=cds.MS.gene43970.t1;Parent=MS.gene43970.t1 |
| Gene Sequence |
| Protein sequence |
