Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76227.t1 | XP_024627854.1 | 87.6 | 1276 | 105 | 7 | 1 | 1227 | 1 | 1272 | 0.00E+00 | 2156.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76227.t1 | Q8L5R3 | 59.2 | 1274 | 443 | 13 | 3 | 1227 | 9 | 1254 | 0.0e+00 | 1406.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76227.t1 | A0A072VQN2 | 87.6 | 1276 | 105 | 7 | 1 | 1227 | 1 | 1272 | 0.0e+00 | 2156.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049142 | MS.gene76227 | 0.830913 | 2.25E-55 | -1.69E-46 |
MS.gene04918 | MS.gene76227 | 0.819653 | 1.04E-52 | -1.69E-46 |
MS.gene04920 | MS.gene76227 | 0.805669 | 1.19E-49 | -1.69E-46 |
MS.gene049254 | MS.gene76227 | 0.814896 | 1.22E-51 | -1.69E-46 |
MS.gene049283 | MS.gene76227 | 0.812531 | 4.05E-51 | -1.69E-46 |
MS.gene049350 | MS.gene76227 | 0.849573 | 2.96E-60 | -1.69E-46 |
MS.gene049368 | MS.gene76227 | 0.812608 | 3.89E-51 | -1.69E-46 |
MS.gene049441 | MS.gene76227 | 0.812966 | 3.25E-51 | -1.69E-46 |
MS.gene049711 | MS.gene76227 | 0.860385 | 2.14E-63 | -1.69E-46 |
MS.gene049807 | MS.gene76227 | 0.854897 | 9.06E-62 | -1.69E-46 |
MS.gene049824 | MS.gene76227 | 0.830458 | 2.90E-55 | -1.69E-46 |
MS.gene049825 | MS.gene76227 | 0.828717 | 7.70E-55 | -1.69E-46 |
MS.gene049873 | MS.gene76227 | 0.808567 | 2.91E-50 | -1.69E-46 |
MS.gene050414 | MS.gene76227 | 0.816893 | 4.37E-52 | -1.69E-46 |
MS.gene050559 | MS.gene76227 | 0.841413 | 4.82E-58 | -1.69E-46 |
MS.gene050561 | MS.gene76227 | 0.828925 | 6.85E-55 | -1.69E-46 |
MS.gene050562 | MS.gene76227 | 0.829063 | 6.35E-55 | -1.69E-46 |
MS.gene050945 | MS.gene76227 | 0.831888 | 1.29E-55 | -1.69E-46 |
MS.gene051003 | MS.gene76227 | 0.809066 | 2.27E-50 | -1.69E-46 |
MS.gene051043 | MS.gene76227 | 0.80557 | 1.25E-49 | -1.69E-46 |
MS.gene051201 | MS.gene76227 | 0.832165 | 1.10E-55 | -1.69E-46 |
MS.gene051234 | MS.gene76227 | 0.838847 | 2.25E-57 | -1.69E-46 |
MS.gene051279 | MS.gene76227 | 0.837723 | 4.39E-57 | -1.69E-46 |
MS.gene051343 | MS.gene76227 | 0.805482 | 1.31E-49 | -1.69E-46 |
MS.gene051450 | MS.gene76227 | 0.819442 | 1.16E-52 | -1.69E-46 |
MS.gene051664 | MS.gene76227 | 0.80522 | 1.48E-49 | -1.69E-46 |
MS.gene051700 | MS.gene76227 | 0.804147 | 2.48E-49 | -1.69E-46 |
MS.gene051719 | MS.gene76227 | 0.809729 | 1.64E-50 | -1.69E-46 |
MS.gene051720 | MS.gene76227 | 0.831856 | 1.32E-55 | -1.69E-46 |
MS.gene051744 | MS.gene76227 | 0.843779 | 1.14E-58 | -1.69E-46 |
MS.gene051975 | MS.gene76227 | 0.800042 | 1.73E-48 | -1.69E-46 |
MS.gene052016 | MS.gene76227 | 0.80894 | 2.42E-50 | -1.69E-46 |
MS.gene052072 | MS.gene76227 | 0.80328 | 3.76E-49 | -1.69E-46 |
MS.gene052307 | MS.gene76227 | 0.831313 | 1.79E-55 | -1.69E-46 |
MS.gene052335 | MS.gene76227 | 0.808013 | 3.81E-50 | -1.69E-46 |
MS.gene052463 | MS.gene76227 | 0.825217 | 5.29E-54 | -1.69E-46 |
MS.gene052516 | MS.gene76227 | 0.801222 | 9.97E-49 | -1.69E-46 |
MS.gene052519 | MS.gene76227 | 0.802271 | 6.07E-49 | -1.69E-46 |
MS.gene052533 | MS.gene76227 | 0.849638 | 2.84E-60 | -1.69E-46 |
MS.gene052582 | MS.gene76227 | 0.814232 | 1.71E-51 | -1.69E-46 |
MS.gene052584 | MS.gene76227 | 0.820713 | 5.93E-53 | -1.69E-46 |
MS.gene052609 | MS.gene76227 | 0.812061 | 5.12E-51 | -1.69E-46 |
MS.gene052773 | MS.gene76227 | 0.809332 | 1.99E-50 | -1.69E-46 |
MS.gene052793 | MS.gene76227 | 0.809412 | 1.92E-50 | -1.69E-46 |
MS.gene053079 | MS.gene76227 | 0.810541 | 1.10E-50 | -1.69E-46 |
MS.gene053122 | MS.gene76227 | 0.872126 | 4.04E-67 | -1.69E-46 |
MS.gene053143 | MS.gene76227 | 0.816932 | 4.29E-52 | -1.69E-46 |
MS.gene053144 | MS.gene76227 | 0.816082 | 6.64E-52 | -1.69E-46 |
MS.gene053171 | MS.gene76227 | 0.80469 | 1.91E-49 | -1.69E-46 |
MS.gene053226 | MS.gene76227 | 0.856154 | 3.90E-62 | -1.69E-46 |
MS.gene053272 | MS.gene76227 | -0.828768 | 7.48E-55 | -1.69E-46 |
MS.gene053536 | MS.gene76227 | 0.815453 | 9.17E-52 | -1.69E-46 |
MS.gene053538 | MS.gene76227 | 0.813383 | 2.63E-51 | -1.69E-46 |
MS.gene053599 | MS.gene76227 | 0.806002 | 1.02E-49 | -1.69E-46 |
MS.gene05364 | MS.gene76227 | 0.833146 | 6.31E-56 | -1.69E-46 |
MS.gene053931 | MS.gene76227 | 0.800115 | 1.68E-48 | -1.69E-46 |
MS.gene054142 | MS.gene76227 | 0.85924 | 4.74E-63 | -1.69E-46 |
MS.gene054178 | MS.gene76227 | 0.822536 | 2.25E-53 | -1.69E-46 |
MS.gene054584 | MS.gene76227 | 0.809319 | 2.01E-50 | -1.69E-46 |
MS.gene05458 | MS.gene76227 | 0.807137 | 5.86E-50 | -1.69E-46 |
MS.gene054651 | MS.gene76227 | 0.826935 | 2.06E-54 | -1.69E-46 |
MS.gene054991 | MS.gene76227 | 0.80827 | 3.36E-50 | -1.69E-46 |
MS.gene055229 | MS.gene76227 | 0.829568 | 4.79E-55 | -1.69E-46 |
MS.gene05539 | MS.gene76227 | 0.800413 | 1.46E-48 | -1.69E-46 |
MS.gene055465 | MS.gene76227 | 0.801308 | 9.57E-49 | -1.69E-46 |
MS.gene055513 | MS.gene76227 | 0.848723 | 5.11E-60 | -1.69E-46 |
MS.gene055555 | MS.gene76227 | 0.807797 | 4.24E-50 | -1.69E-46 |
MS.gene055580 | MS.gene76227 | -0.820402 | 6.99E-53 | -1.69E-46 |
MS.gene056043 | MS.gene76227 | -0.803423 | 3.51E-49 | -1.69E-46 |
MS.gene056050 | MS.gene76227 | 0.804857 | 1.77E-49 | -1.69E-46 |
MS.gene056082 | MS.gene76227 | 0.855482 | 6.13E-62 | -1.69E-46 |
MS.gene056308 | MS.gene76227 | 0.838106 | 3.50E-57 | -1.69E-46 |
MS.gene056677 | MS.gene76227 | 0.812983 | 3.22E-51 | -1.69E-46 |
MS.gene056699 | MS.gene76227 | 0.816637 | 4.99E-52 | -1.69E-46 |
MS.gene05686 | MS.gene76227 | 0.84531 | 4.40E-59 | -1.69E-46 |
MS.gene05689 | MS.gene76227 | 0.810669 | 1.03E-50 | -1.69E-46 |
MS.gene057034 | MS.gene76227 | 0.803598 | 3.23E-49 | -1.69E-46 |
MS.gene057082 | MS.gene76227 | 0.805181 | 1.51E-49 | -1.69E-46 |
MS.gene057102 | MS.gene76227 | 0.893969 | 3.83E-75 | -1.69E-46 |
MS.gene057208 | MS.gene76227 | 0.825426 | 4.72E-54 | -1.69E-46 |
MS.gene058008 | MS.gene76227 | 0.807696 | 4.46E-50 | -1.69E-46 |
MS.gene058149 | MS.gene76227 | 0.824621 | 7.31E-54 | -1.69E-46 |
MS.gene058330 | MS.gene76227 | 0.820147 | 8.00E-53 | -1.69E-46 |
MS.gene058355 | MS.gene76227 | 0.810709 | 1.01E-50 | -1.69E-46 |
MS.gene058492 | MS.gene76227 | 0.835107 | 2.03E-56 | -1.69E-46 |
MS.gene058625 | MS.gene76227 | 0.81626 | 6.06E-52 | -1.69E-46 |
MS.gene058668 | MS.gene76227 | 0.816525 | 5.29E-52 | -1.69E-46 |
MS.gene05894 | MS.gene76227 | 0.803833 | 2.89E-49 | -1.69E-46 |
MS.gene059146 | MS.gene76227 | 0.800586 | 1.34E-48 | -1.69E-46 |
MS.gene059227 | MS.gene76227 | 0.810234 | 1.28E-50 | -1.69E-46 |
MS.gene059424 | MS.gene76227 | 0.804873 | 1.75E-49 | -1.69E-46 |
MS.gene059625 | MS.gene76227 | 0.821004 | 5.08E-53 | -1.69E-46 |
MS.gene059778 | MS.gene76227 | 0.845934 | 2.98E-59 | -1.69E-46 |
MS.gene05985 | MS.gene76227 | -0.883483 | 4.32E-71 | -1.69E-46 |
MS.gene059935 | MS.gene76227 | 0.812837 | 3.47E-51 | -1.69E-46 |
MS.gene059965 | MS.gene76227 | 0.820155 | 7.96E-53 | -1.69E-46 |
MS.gene060365 | MS.gene76227 | 0.832682 | 8.22E-56 | -1.69E-46 |
MS.gene060519 | MS.gene76227 | 0.812511 | 4.09E-51 | -1.69E-46 |
MS.gene060525 | MS.gene76227 | 0.837648 | 4.59E-57 | -1.69E-46 |
MS.gene060935 | MS.gene76227 | 0.827563 | 1.46E-54 | -1.69E-46 |
MS.gene060937 | MS.gene76227 | 0.828126 | 1.07E-54 | -1.69E-46 |
MS.gene061100 | MS.gene76227 | 0.862962 | 3.49E-64 | -1.69E-46 |
MS.gene061160 | MS.gene76227 | 0.83193 | 1.26E-55 | -1.69E-46 |
MS.gene061188 | MS.gene76227 | 0.835555 | 1.57E-56 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76227.t1 | MTR_1g112130 | 87.618 | 1276 | 105 | 7 | 1 | 1227 | 1 | 1272 | 0.0 | 2195 |
MS.gene76227.t1 | MTR_1g112130 | 86.796 | 1189 | 103 | 8 | 1 | 1139 | 1 | 1185 | 0.0 | 2013 |
MS.gene76227.t1 | MTR_1g112130 | 86.176 | 1114 | 102 | 6 | 1 | 1066 | 1 | 1110 | 0.0 | 1870 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene76227.t1 | AT3G60740 | 59.490 | 1254 | 431 | 13 | 23 | 1227 | 29 | 1254 | 0.0 | 1447 |
MS.gene76227.t1 | AT3G60740 | 61.271 | 1149 | 394 | 11 | 102 | 1227 | 62 | 1182 | 0.0 | 1389 |
MS.gene76227.t1 | AT3G60740 | 59.482 | 1081 | 361 | 13 | 23 | 1054 | 29 | 1081 | 0.0 | 1261 |
Find 230 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGGATTATCTTTCAGTTTC+TGG | 0.106508 | 1.1:+79211160 | MS.gene76227:CDS |
GCACTGTTAGAGTATTTAAA+AGG | 0.188952 | 1.1:+79220576 | MS.gene76227:CDS |
AGAACCTGTATGTGAGATTT+TGG | 0.224421 | 1.1:-79219386 | None:intergenic |
TTCTCTGGCAATAGAATTAA+AGG | 0.230523 | 1.1:+79222924 | MS.gene76227:CDS |
CAAAGAGAATCAGTCCAATT+TGG | 0.251679 | 1.1:+79214059 | MS.gene76227:CDS |
ACAAATCCCGCCAACTAAAT+TGG | 0.259867 | 1.1:-79220192 | None:intergenic |
TTCTCTCGGAAAGGTATATA+TGG | 0.266887 | 1.1:-79220302 | None:intergenic |
ATATACTCCCTGAGCATTCT+TGG | 0.275030 | 1.1:-79220621 | None:intergenic |
GTACAGAGTGTTGCTGTTAA+AGG | 0.276220 | 1.1:+79219480 | MS.gene76227:intron |
ATCATACAGCTGCTTCAATT+TGG | 0.279682 | 1.1:+79220471 | MS.gene76227:CDS |
CGCTAAGAAGCCTAAAGATT+TGG | 0.281822 | 1.1:+79223466 | MS.gene76227:CDS |
CCCTGAGCATTCTTGGATTA+GGG | 0.289492 | 1.1:-79220614 | None:intergenic |
CGAAGGAAGCAGATGCAAAA+TGG | 0.289712 | 1.1:+79220342 | MS.gene76227:CDS |
AGTCATCGTACCCACTTTAA+AGG | 0.290504 | 1.1:+79220695 | MS.gene76227:CDS |
TGACTGGTTAATAACTCATT+TGG | 0.298590 | 1.1:-79219642 | None:intergenic |
GGCAAGTAAGCCCAATCCTT+TGG | 0.299357 | 1.1:-79213057 | None:intergenic |
ATTGGACTGATTCTCTTTGC+TGG | 0.300760 | 1.1:-79214055 | None:intergenic |
CCTCTTGTGTTGAGGATCAT+AGG | 0.307879 | 1.1:+79211130 | MS.gene76227:CDS |
TACCTTGTCCTCCTGCAAAA+TGG | 0.318484 | 1.1:+79223272 | MS.gene76227:CDS |
ATTCAAAGTAATATTTAGTT+TGG | 0.318807 | 1.1:-79214028 | None:intergenic |
CAGGACTAACCTCCATATTA+AGG | 0.321942 | 1.1:-79221256 | None:intergenic |
TCCCTGAGCATTCTTGGATT+AGG | 0.325329 | 1.1:-79220615 | None:intergenic |
TATACACTCATGGCGTTATA+CGG | 0.329124 | 1.1:+79213090 | MS.gene76227:CDS |
TCCTCATTAGTCGAGTCATC+TGG | 0.329434 | 1.1:+79223506 | MS.gene76227:CDS |
CTTCAATGGCTCCAAGTAAC+TGG | 0.330263 | 1.1:-79212037 | None:intergenic |
TTACTAGATTTAGATGATAA+AGG | 0.338755 | 1.1:+79219528 | MS.gene76227:CDS |
TATAGCAGATATGTGGTATC+AGG | 0.339939 | 1.1:+79220498 | MS.gene76227:CDS |
ATCATTGAGATGTTGCTATC+TGG | 0.342371 | 1.1:+79214167 | MS.gene76227:CDS |
AGTCATATCTATTGGTGATT+TGG | 0.342770 | 1.1:+79220524 | MS.gene76227:CDS |
ACAGAGGTGATGTTGGTTCT+TGG | 0.346029 | 1.1:+79219988 | MS.gene76227:CDS |
TGATAATGCCACTTTAGATA+TGG | 0.347076 | 1.1:-79219312 | None:intergenic |
ATTGTTGTTCGCACCCAAAT+TGG | 0.347980 | 1.1:-79214073 | None:intergenic |
ATTGTTTGAATTGCTTGGTT+TGG | 0.351515 | 1.1:+79223394 | MS.gene76227:CDS |
CAGAGGTGATGTTGGTTCTT+GGG | 0.351546 | 1.1:+79219989 | MS.gene76227:CDS |
CCTCTCCTTACAGCAGCATT+TGG | 0.364407 | 1.1:-79219594 | None:intergenic |
ATCTGACTTGTGCATGCGCC+AGG | 0.369089 | 1.1:+79218238 | MS.gene76227:CDS |
AATCTTGCTACCAATTTAGT+TGG | 0.369187 | 1.1:+79220182 | MS.gene76227:CDS |
CAGGGTGCAACATTGGCAAC+TGG | 0.369665 | 1.1:+79218257 | MS.gene76227:CDS |
TGCAATTATGTTCTTCCCTC+AGG | 0.369969 | 1.1:+79218305 | MS.gene76227:CDS |
CTCTGTAGGATTGGCAGATC+AGG | 0.372959 | 1.1:+79220056 | MS.gene76227:CDS |
TATCGCATTTCCTGTATTGT+TGG | 0.373210 | 1.1:-79220671 | None:intergenic |
GCTTCAGCATCTCTTTCCTC+AGG | 0.383142 | 1.1:-79219798 | None:intergenic |
TGAATTGCTTGGTTTGGAGG+TGG | 0.384529 | 1.1:+79223400 | MS.gene76227:CDS |
ACAACAACAGGAACAACTTT+GGG | 0.386630 | 1.1:-79216373 | None:intergenic |
GACTGGTTAATAACTCATTT+GGG | 0.387513 | 1.1:-79219641 | None:intergenic |
AATATACGATTGATCTGATT+TGG | 0.390348 | 1.1:-79210606 | None:intergenic |
CGAACTTGCGGTGTCTCTAC+TGG | 0.392185 | 1.1:+79210932 | MS.gene76227:CDS |
CACAACAACAGGAACAACTT+TGG | 0.396400 | 1.1:-79216374 | None:intergenic |
GCACATAATTTCCAGTTACT+TGG | 0.399167 | 1.1:+79212026 | MS.gene76227:CDS |
AAAAGTGCTTCCTTCAAGAA+TGG | 0.399315 | 1.1:+79210515 | MS.gene76227:CDS |
CTCTTGTGTTGAGGATCATA+GGG | 0.401445 | 1.1:+79211131 | MS.gene76227:CDS |
AAAGAGAATCAGTCCAATTT+GGG | 0.404028 | 1.1:+79214060 | MS.gene76227:CDS |
TTGATGTAATTCCTATCGTT+TGG | 0.406554 | 1.1:+79212957 | MS.gene76227:CDS |
GAATTGCTTGGTTTGGAGGT+GGG | 0.407112 | 1.1:+79223401 | MS.gene76227:CDS |
TCAGGTTTAGTCATATCTAT+TGG | 0.407873 | 1.1:+79220516 | MS.gene76227:CDS |
AGGATCGGAGATGCGAGAAT+TGG | 0.409713 | 1.1:-79210572 | None:intergenic |
CATGCTGGTATTGCAATACT+TGG | 0.409961 | 1.1:+79222970 | MS.gene76227:CDS |
GCATATGTATGCTGGGCATT+TGG | 0.411922 | 1.1:+79216679 | MS.gene76227:CDS |
GCAAGTAAGCCCAATCCTTT+GGG | 0.415626 | 1.1:-79213056 | None:intergenic |
ATGCTGCTGCATATGTATGC+TGG | 0.415728 | 1.1:+79216671 | MS.gene76227:CDS |
AATTGCTTGGTTTGGAGGTG+GGG | 0.428201 | 1.1:+79223402 | MS.gene76227:CDS |
AAATTATTTCTATGACTCGC+TGG | 0.429915 | 1.1:+79223333 | MS.gene76227:CDS |
TGCTGCTGCATATGTATGCT+GGG | 0.431673 | 1.1:+79216672 | MS.gene76227:CDS |
GTTCGTGAGGCTGCATTACA+TGG | 0.434566 | 1.1:+79220011 | MS.gene76227:CDS |
TGAAGTTAACCCAAAGGATT+GGG | 0.436826 | 1.1:+79213047 | MS.gene76227:CDS |
CAGGGCGAGGGTTCATGGCA+TGG | 0.439284 | 1.1:+79216292 | MS.gene76227:intron |
TACAGAGTGTTGCTGTTAAA+GGG | 0.439297 | 1.1:+79219481 | MS.gene76227:intron |
ATCTGTAATTTCAATTGAGT+TGG | 0.439713 | 1.1:-79214100 | None:intergenic |
CAAAGTAATATTTAGTTTGG+TGG | 0.440003 | 1.1:-79214025 | None:intergenic |
AATAGCAGCCAGTGCTTCAA+TGG | 0.440109 | 1.1:-79212051 | None:intergenic |
GTTTGAATTGCTTGGTTTGG+AGG | 0.441179 | 1.1:+79223397 | MS.gene76227:CDS |
CACTGTTAGAGTATTTAAAA+GGG | 0.442019 | 1.1:+79220577 | MS.gene76227:CDS |
AATACCACCTTCACAACAAC+AGG | 0.444754 | 1.1:-79216385 | None:intergenic |
TGTGGCTATATATACTGTAT+TGG | 0.445679 | 1.1:+79211036 | MS.gene76227:CDS |
TCCATTTGTGAGTGACCTGC+TGG | 0.446587 | 1.1:+79217055 | MS.gene76227:CDS |
GCTCTCGTATGGATTGGTTC+TGG | 0.449432 | 1.1:-79223009 | None:intergenic |
ATACTCTAAATGAGAATTTG+AGG | 0.450365 | 1.1:+79219360 | MS.gene76227:CDS |
AGAGGATCTGCATTGGCAAT+AGG | 0.457664 | 1.1:+79219612 | MS.gene76227:CDS |
GCTGTAACTGTTTCTTCGCT+CGG | 0.461253 | 1.1:-79210433 | None:intergenic |
CCTGCCGTCCAACATTCTCC+TGG | 0.461564 | 1.1:-79216914 | None:intergenic |
ATTGCTTCAGCTTTGTCGAT+TGG | 0.462379 | 1.1:+79211970 | MS.gene76227:intron |
CCAGGAGAATGTTGGACGGC+AGG | 0.464798 | 1.1:+79216914 | MS.gene76227:CDS |
ATGAAGTTAACCCAAAGGAT+TGG | 0.464952 | 1.1:+79213046 | MS.gene76227:CDS |
GTCTGTGAAACATTAGTTAG+TGG | 0.465974 | 1.1:+79219852 | MS.gene76227:CDS |
TTTGAAGAGGGTATCACTCT+TGG | 0.466820 | 1.1:+79220554 | MS.gene76227:CDS |
GAAGGAAGCAGATGCAAAAT+GGG | 0.470077 | 1.1:+79220343 | MS.gene76227:CDS |
CTTCAGCATCTCTTTCCTCA+GGG | 0.470165 | 1.1:-79219797 | None:intergenic |
TGTGGGTTCTCCAACAATAC+AGG | 0.472563 | 1.1:+79220661 | MS.gene76227:CDS |
ATCTTTAGGCTTCTTAGCGT+TGG | 0.477774 | 1.1:-79223462 | None:intergenic |
TGACTTCTTCTAACTTCTCT+CGG | 0.477797 | 1.1:-79220316 | None:intergenic |
TAATGGACGTCGAGCTGCGA+TGG | 0.480249 | 1.1:-79213008 | None:intergenic |
TCCAGCAGGTCACTCACAAA+TGG | 0.480671 | 1.1:-79217056 | None:intergenic |
GAATACACGACTATGCATAT+AGG | 0.482165 | 1.1:-79210847 | None:intergenic |
GAAAGGCAATACCTTTAAAG+TGG | 0.482802 | 1.1:-79220706 | None:intergenic |
GATCGAATAATGTTCATCAA+TGG | 0.485619 | 1.1:-79210773 | None:intergenic |
GTTGAATTGTTTGAATTGCT+TGG | 0.487703 | 1.1:+79223389 | MS.gene76227:CDS |
ATGAGTTATTAACCAGTCAA+TGG | 0.490442 | 1.1:+79219646 | MS.gene76227:CDS |
ACCCTAATCCAAGAATGCTC+AGG | 0.490549 | 1.1:+79220613 | MS.gene76227:CDS |
AGGATAAAACCTCCTCAGAA+AGG | 0.493867 | 1.1:-79215779 | None:intergenic |
ATCAGATGCTTGCGGAGTAA+TGG | 0.494080 | 1.1:-79213025 | None:intergenic |
CGTACTTTACAAGAAAAGAA+AGG | 0.496768 | 1.1:-79218160 | None:intergenic |
TAAGCAAGCTGTGGAGAAGA+TGG | 0.497161 | 1.1:+79220214 | MS.gene76227:CDS |
CATATTATCACACAGATATG+AGG | 0.498066 | 1.1:+79216707 | MS.gene76227:CDS |
TTGCTACCAATTTAGTTGGC+GGG | 0.498845 | 1.1:+79220186 | MS.gene76227:CDS |
TGACGATGTTCCATTCTTGA+AGG | 0.500313 | 1.1:-79210525 | None:intergenic |
CTTGCTACCAATTTAGTTGG+CGG | 0.500807 | 1.1:+79220185 | MS.gene76227:CDS |
AAGCACATTTCTCCATTGAC+TGG | 0.501608 | 1.1:-79219658 | None:intergenic |
GACGTCTTCCCTTTCTGAGG+AGG | 0.501611 | 1.1:+79215770 | MS.gene76227:CDS |
GACTCGCTGGGATGATAGCA+TGG | 0.502260 | 1.1:+79223346 | MS.gene76227:CDS |
TTCTGGTCGGATGAGTACTA+TGG | 0.505921 | 1.1:+79211177 | MS.gene76227:CDS |
TGGTCTGCAGCGAAAGGTAT+TGG | 0.507925 | 1.1:+79215729 | MS.gene76227:CDS |
GCACGTCTTTATCGTGGAAA+GGG | 0.508234 | 1.1:+79219242 | MS.gene76227:CDS |
AGTGTACGTATATGCTCTGT+AGG | 0.509064 | 1.1:+79220042 | MS.gene76227:CDS |
CGTAGCATGCCACTGTTAAG+AGG | 0.509884 | 1.1:-79216756 | None:intergenic |
TGCTGTCAGTTGACATCCTG+TGG | 0.510604 | 1.1:+79220643 | MS.gene76227:CDS |
CCTCATTAGTCGAGTCATCT+GGG | 0.511144 | 1.1:+79223507 | MS.gene76227:CDS |
TGCAATACCAGCATGCAACT+TGG | 0.511728 | 1.1:-79222962 | None:intergenic |
ACTTGGAGCCATTGAAGCAC+TGG | 0.514918 | 1.1:+79212043 | MS.gene76227:CDS |
TCTTGTTCATCCGTACCCTA+AGG | 0.516816 | 1.1:+79223053 | MS.gene76227:CDS |
ACAACTTTGGGAAGACTAGC+AGG | 0.518043 | 1.1:-79216361 | None:intergenic |
CAGAAGTATCATACCTCACC+AGG | 0.520075 | 1.1:-79215822 | None:intergenic |
TTGTGGCTGTTGTAAAATTG+AGG | 0.520626 | 1.1:+79219689 | MS.gene76227:CDS |
TTTGGTAGATTCTTTGAAGA+GGG | 0.521338 | 1.1:+79220542 | MS.gene76227:CDS |
GAAGAGGTCCGCATAGTGTC+GGG | 0.521843 | 1.1:+79216635 | MS.gene76227:CDS |
TCATCTCTCAAGAACGGTGA+TGG | 0.523034 | 1.1:+79223425 | MS.gene76227:CDS |
GGATAAAACCTCCTCAGAAA+GGG | 0.523213 | 1.1:-79215778 | None:intergenic |
TGGTTGTTATAGCAGATATG+TGG | 0.527259 | 1.1:+79220491 | MS.gene76227:CDS |
AGGGTGCAACATTGGCAACT+GGG | 0.527754 | 1.1:+79218258 | MS.gene76227:CDS |
GAGTGTTGCTGTTAAAGGGC+TGG | 0.528410 | 1.1:+79219485 | MS.gene76227:intron |
GCATCCAAAATCTCACATAC+AGG | 0.530097 | 1.1:+79219382 | MS.gene76227:CDS |
CGAAGAGGTCCGCATAGTGT+CGG | 0.532583 | 1.1:+79216634 | MS.gene76227:CDS |
AATTATTTCTATGACTCGCT+GGG | 0.535594 | 1.1:+79223334 | MS.gene76227:CDS |
CTGATTTGGTGAACGGATGA+AGG | 0.535895 | 1.1:-79210592 | None:intergenic |
GTACTTTACAAGAAAAGAAA+GGG | 0.536397 | 1.1:-79218159 | None:intergenic |
AGTTGTTCCTGTTGTTGTGA+AGG | 0.536707 | 1.1:+79216378 | MS.gene76227:CDS |
GACTTCTCCAAGTTGCATGC+TGG | 0.536808 | 1.1:+79222955 | MS.gene76227:CDS |
CGAAATGTGTGTTGTTGTTG+TGG | 0.537039 | 1.1:+79211018 | MS.gene76227:CDS |
CTGATCCAAATGCTGCTGTA+AGG | 0.537199 | 1.1:+79219589 | MS.gene76227:CDS |
CAGGAGAATGTTGGACGGCA+GGG | 0.537816 | 1.1:+79216915 | MS.gene76227:CDS |
GAGAAGGCTCTCGTATGGAT+TGG | 0.539384 | 1.1:-79223015 | None:intergenic |
TTAAGCATATTATCAGTCAA+AGG | 0.540182 | 1.1:-79220128 | None:intergenic |
TTCAGTTTCGTCTTTGAGAG+AGG | 0.540960 | 1.1:+79210974 | MS.gene76227:CDS |
CGAATAATGTTCATCAATGG+TGG | 0.541098 | 1.1:-79210770 | None:intergenic |
AAAATCATTCTCGGTGAAAG+AGG | 0.541155 | 1.1:-79219892 | None:intergenic |
GCAGCTTTCCAGGAGAATGT+TGG | 0.541201 | 1.1:+79216906 | MS.gene76227:CDS |
TTAAGAATCACCTTAGGGTA+CGG | 0.543572 | 1.1:-79223063 | None:intergenic |
GTTGAGAGAAGGCTCTCGTA+TGG | 0.544853 | 1.1:-79223020 | None:intergenic |
ACGCATCTCCATATCTAAAG+TGG | 0.545195 | 1.1:+79219304 | MS.gene76227:CDS |
CATGCGCCAGGGTGCAACAT+TGG | 0.546451 | 1.1:+79218250 | MS.gene76227:CDS |
GCATGGAGGCTGCTTAGCGT+TGG | 0.548597 | 1.1:+79216309 | MS.gene76227:CDS |
TTCGTATTGAGCGACGGAGA+TGG | 0.550956 | 1.1:-79217021 | None:intergenic |
GGTCGGATGAGTACTATGGC+TGG | 0.551296 | 1.1:+79211181 | MS.gene76227:CDS |
GGAAACGGTGTCGTTGAGGA+AGG | 0.553070 | 1.1:-79210551 | None:intergenic |
TTCCTCATCGTATACACTCA+TGG | 0.553667 | 1.1:+79213080 | MS.gene76227:CDS |
CCTGCAAAATGGAAATCTTG+TGG | 0.554314 | 1.1:+79223283 | MS.gene76227:CDS |
CATGAGAGAACTTGCTGCAG+AGG | 0.556855 | 1.1:+79218136 | MS.gene76227:CDS |
AATTGGAAACGGTGTCGTTG+AGG | 0.557803 | 1.1:-79210555 | None:intergenic |
AGATTGTACCTCTTGTGTTG+AGG | 0.559312 | 1.1:+79211122 | MS.gene76227:CDS |
TCTTTGAGAGAGGAAAGTAC+TGG | 0.562349 | 1.1:+79210984 | MS.gene76227:CDS |
AGCACGTCTTTATCGTGGAA+AGG | 0.563167 | 1.1:+79219241 | MS.gene76227:CDS |
TCTTCTAACTTCTCTCGGAA+AGG | 0.563379 | 1.1:-79220311 | None:intergenic |
GTCCGTTGGTCTGCAGCGAA+AGG | 0.563885 | 1.1:+79215723 | MS.gene76227:CDS |
AAAGATATTCCTTAATATGG+AGG | 0.568951 | 1.1:+79221247 | MS.gene76227:CDS |
TCTCTGGCAATAGAATTAAA+GGG | 0.569416 | 1.1:+79222925 | MS.gene76227:CDS |
ACGTATATGCTCTGTAGGAT+TGG | 0.569940 | 1.1:+79220047 | MS.gene76227:CDS |
CCCAGATGACTCGACTAATG+AGG | 0.573370 | 1.1:-79223507 | None:intergenic |
TTGGTGAACGGATGAAGGAT+CGG | 0.575098 | 1.1:-79210587 | None:intergenic |
TACAGATGAGGCAGAAGATG+AGG | 0.575639 | 1.1:+79214116 | MS.gene76227:CDS |
ATTATCTTTCAGTTTCTGGT+CGG | 0.576574 | 1.1:+79211164 | MS.gene76227:CDS |
TACCTTTCGCTGCAGACCAA+CGG | 0.577331 | 1.1:-79215725 | None:intergenic |
TGTAGAACACTGTTGTCCGT+TGG | 0.577807 | 1.1:+79215709 | MS.gene76227:intron |
AGTTTCTGATCTCGAACTTG+CGG | 0.578941 | 1.1:+79210920 | MS.gene76227:intron |
ATTTATAAGCAGCAGGCAGT+CGG | 0.579338 | 1.1:+79212924 | MS.gene76227:intron |
AAAAGTAAGAAGTTGAGAGA+AGG | 0.580104 | 1.1:-79223031 | None:intergenic |
CCCTAATCCAAGAATGCTCA+GGG | 0.588134 | 1.1:+79220614 | MS.gene76227:CDS |
TTGGCTGAACTTTCTCGTAG+AGG | 0.588332 | 1.1:+79216328 | MS.gene76227:CDS |
CTCAATTGAAATTACAGATG+AGG | 0.588966 | 1.1:+79214104 | MS.gene76227:CDS |
ATCTGATGAAGTTAACCCAA+AGG | 0.590595 | 1.1:+79213041 | MS.gene76227:CDS |
TGTATTGTTGGAGAACCCAC+AGG | 0.590881 | 1.1:-79220659 | None:intergenic |
TTTGACGTCTTCCCTTTCTG+AGG | 0.591409 | 1.1:+79215767 | MS.gene76227:CDS |
CGGGATTTGTAAGCAAGCTG+TGG | 0.592065 | 1.1:+79220205 | MS.gene76227:CDS |
AAGTCAGATGAAAGAGTACA+AGG | 0.594785 | 1.1:-79218224 | None:intergenic |
ATCTCCGTCGCTCAATACGA+AGG | 0.596338 | 1.1:+79217023 | MS.gene76227:CDS |
GTTAGAAGAAGTCATTCCGA+AGG | 0.596658 | 1.1:+79220325 | MS.gene76227:CDS |
CTAAATCTAGTAAGTAAGCA+CGG | 0.599471 | 1.1:-79219518 | None:intergenic |
ACTGTTAGAGTATTTAAAAG+GGG | 0.600698 | 1.1:+79220578 | MS.gene76227:CDS |
GATTGATCTGATTTGGTGAA+CGG | 0.601059 | 1.1:-79210599 | None:intergenic |
GCGCGAGTAAATGCTGTCAA+AGG | 0.602373 | 1.1:+79219819 | MS.gene76227:CDS |
ATTTGGTAGATTCTTTGAAG+AGG | 0.603035 | 1.1:+79220541 | MS.gene76227:CDS |
CCTATGATCCTCAACACAAG+AGG | 0.606374 | 1.1:-79211130 | None:intergenic |
GTTGACAACAGAGGTGATGT+TGG | 0.606763 | 1.1:+79219981 | MS.gene76227:CDS |
TGCTTGTCTAGAAAATCAGA+TGG | 0.608132 | 1.1:+79220080 | MS.gene76227:CDS |
CGGCAGGGAAATTATCCGCA+TGG | 0.611227 | 1.1:+79216930 | MS.gene76227:CDS |
CGTCTTTATCGTGGAAAGGG+AGG | 0.611257 | 1.1:+79219245 | MS.gene76227:CDS |
GGAGATGCGAGAATTGGAAA+CGG | 0.612366 | 1.1:-79210566 | None:intergenic |
GAAGCAGCTGTATGATGTGT+GGG | 0.612758 | 1.1:-79220464 | None:intergenic |
TTAACTTCATCAGATGCTTG+CGG | 0.613349 | 1.1:-79213033 | None:intergenic |
AAAGGCAATACCTTTAAAGT+GGG | 0.617607 | 1.1:-79220705 | None:intergenic |
TGTTGGTTCTTGGGTTCGTG+AGG | 0.628354 | 1.1:+79219998 | MS.gene76227:CDS |
GGGTGCAACATTGGCAACTG+GGG | 0.630222 | 1.1:+79218259 | MS.gene76227:CDS |
CAGTTGCCAATGTTGCACCC+TGG | 0.631333 | 1.1:-79218256 | None:intergenic |
TGTAAGGAGAGGATCTGCAT+TGG | 0.632563 | 1.1:+79219605 | MS.gene76227:CDS |
CATGCCACTGTTAAGAGGTG+CGG | 0.634247 | 1.1:-79216751 | None:intergenic |
GAAGTGTCGTTCCAAACGAT+AGG | 0.635423 | 1.1:-79212968 | None:intergenic |
GGCGAGGGTTCATGGCATGG+AGG | 0.638162 | 1.1:+79216295 | MS.gene76227:CDS |
CCAAATGCTGCTGTAAGGAG+AGG | 0.638562 | 1.1:+79219594 | MS.gene76227:CDS |
TCTGACTTGTGCATGCGCCA+GGG | 0.638598 | 1.1:+79218239 | MS.gene76227:CDS |
GTGGGGTCATCTCTCAAGAA+CGG | 0.639023 | 1.1:+79223419 | MS.gene76227:CDS |
CGCCATGAGTGTATACGATG+AGG | 0.642907 | 1.1:-79213082 | None:intergenic |
ATGAGTGTATACGATGAGGA+AGG | 0.642958 | 1.1:-79213078 | None:intergenic |
AGAACGGTGATGGAGCAGCA+AGG | 0.646311 | 1.1:+79223435 | MS.gene76227:CDS |
GCTGTCAGTTGACATCCTGT+GGG | 0.655342 | 1.1:+79220644 | MS.gene76227:CDS |
TCGATCAAATCAATCGAACT+CGG | 0.656875 | 1.1:+79210790 | MS.gene76227:CDS |
ACATTAGACCCGACACTATG+CGG | 0.661051 | 1.1:-79216643 | None:intergenic |
TGAAGCAGCTGTATGATGTG+TGG | 0.662732 | 1.1:-79220465 | None:intergenic |
CTTTGTCGATTGGACACACG+AGG | 0.669582 | 1.1:+79211980 | MS.gene76227:CDS |
CTGCATTACGATGTTCGAAG+AGG | 0.669783 | 1.1:+79216619 | MS.gene76227:CDS |
AAGGTAGACATGTTCAGCTG+AGG | 0.671097 | 1.1:-79223255 | None:intergenic |
ATATCCTTCGTATTGAGCGA+CGG | 0.671733 | 1.1:-79217027 | None:intergenic |
TGAAAACAGCTCCAAAACAG+AGG | 0.672305 | 1.1:-79215799 | None:intergenic |
ACTCGCTGGGATGATAGCAT+GGG | 0.674466 | 1.1:+79223347 | MS.gene76227:CDS |
CTTTCCAGGAGAATGTTGGA+CGG | 0.674974 | 1.1:+79216910 | MS.gene76227:CDS |
CGAAGAAACAGTTACAGCGA+CGG | 0.682817 | 1.1:+79210438 | MS.gene76227:CDS |
ACAGCACTCGCAAAATACTG+AGG | 0.708253 | 1.1:-79218185 | None:intergenic |
TGCTCCGCACCTCTTAACAG+TGG | 0.708690 | 1.1:+79216747 | MS.gene76227:CDS |
TTCACAATGTCAATGCCATG+CGG | 0.709541 | 1.1:-79216945 | None:intergenic |
AGTGGCATGCTACGACCGTG+AGG | 0.715403 | 1.1:+79216765 | MS.gene76227:CDS |
CCTATTGCAGGAAAACCCTG+AGG | 0.717092 | 1.1:+79219782 | MS.gene76227:intron |
ATCAGTCAAAGGTTGCACTG+CGG | 0.743698 | 1.1:-79220117 | None:intergenic |
GACTATTCTGTTGACAACAG+AGG | 0.756741 | 1.1:+79219972 | MS.gene76227:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 79210424 | 79223535 | 79210424 | ID=MS.gene76227 |
chr1.1 | mRNA | 79210424 | 79223535 | 79210424 | ID=MS.gene76227.t1;Parent=MS.gene76227 |
chr1.1 | exon | 79210424 | 79210621 | 79210424 | ID=MS.gene76227.t1.exon1;Parent=MS.gene76227.t1 |
chr1.1 | CDS | 79210424 | 79210621 | 79210424 | ID=cds.MS.gene76227.t1;Parent=MS.gene76227.t1 |
chr1.1 | exon | 79210763 | 79210883 | 79210763 | ID=MS.gene76227.t1.exon2;Parent=MS.gene76227.t1 |
chr1.1 | CDS | 79210763 | 79210883 | 79210763 | ID=cds.MS.gene76227.t1;Parent=MS.gene76227.t1 |
chr1.1 | exon | 79210922 | 79211057 | 79210922 | ID=MS.gene76227.t1.exon3;Parent=MS.gene76227.t1 |
chr1.1 | CDS | 79210922 | 79211057 | 79210922 | ID=cds.MS.gene76227.t1;Parent=MS.gene76227.t1 |
chr1.1 | exon | 79211090 | 79211257 | 79211090 | ID=MS.gene76227.t1.exon4;Parent=MS.gene76227.t1 |
chr1.1 | CDS | 79211090 | 79211257 | 79211090 | ID=cds.MS.gene76227.t1;Parent=MS.gene76227.t1 |
chr1.1 | exon | 79211980 | 79212083 | 79211980 | ID=MS.gene76227.t1.exon5;Parent=MS.gene76227.t1 |
chr1.1 | CDS | 79211980 | 79212083 | 79211980 | ID=cds.MS.gene76227.t1;Parent=MS.gene76227.t1 |
chr1.1 | exon | 79212933 | 79213111 | 79212933 | ID=MS.gene76227.t1.exon6;Parent=MS.gene76227.t1 |
chr1.1 | CDS | 79212933 | 79213111 | 79212933 | ID=cds.MS.gene76227.t1;Parent=MS.gene76227.t1 |
chr1.1 | exon | 79214018 | 79214188 | 79214018 | ID=MS.gene76227.t1.exon7;Parent=MS.gene76227.t1 |
chr1.1 | CDS | 79214018 | 79214188 | 79214018 | ID=cds.MS.gene76227.t1;Parent=MS.gene76227.t1 |
chr1.1 | exon | 79215714 | 79215830 | 79215714 | ID=MS.gene76227.t1.exon8;Parent=MS.gene76227.t1 |
chr1.1 | CDS | 79215714 | 79215830 | 79215714 | ID=cds.MS.gene76227.t1;Parent=MS.gene76227.t1 |
chr1.1 | exon | 79216295 | 79216399 | 79216295 | ID=MS.gene76227.t1.exon9;Parent=MS.gene76227.t1 |
chr1.1 | CDS | 79216295 | 79216399 | 79216295 | ID=cds.MS.gene76227.t1;Parent=MS.gene76227.t1 |
chr1.1 | exon | 79216616 | 79216786 | 79216616 | ID=MS.gene76227.t1.exon10;Parent=MS.gene76227.t1 |
chr1.1 | CDS | 79216616 | 79216786 | 79216616 | ID=cds.MS.gene76227.t1;Parent=MS.gene76227.t1 |
chr1.1 | exon | 79216882 | 79217097 | 79216882 | ID=MS.gene76227.t1.exon11;Parent=MS.gene76227.t1 |
chr1.1 | CDS | 79216882 | 79217097 | 79216882 | ID=cds.MS.gene76227.t1;Parent=MS.gene76227.t1 |
chr1.1 | exon | 79218128 | 79218326 | 79218128 | ID=MS.gene76227.t1.exon12;Parent=MS.gene76227.t1 |
chr1.1 | CDS | 79218128 | 79218326 | 79218128 | ID=cds.MS.gene76227.t1;Parent=MS.gene76227.t1 |
chr1.1 | exon | 79219198 | 79219403 | 79219198 | ID=MS.gene76227.t1.exon13;Parent=MS.gene76227.t1 |
chr1.1 | CDS | 79219198 | 79219403 | 79219198 | ID=cds.MS.gene76227.t1;Parent=MS.gene76227.t1 |
chr1.1 | exon | 79219486 | 79219710 | 79219486 | ID=MS.gene76227.t1.exon14;Parent=MS.gene76227.t1 |
chr1.1 | CDS | 79219486 | 79219710 | 79219486 | ID=cds.MS.gene76227.t1;Parent=MS.gene76227.t1 |
chr1.1 | exon | 79219792 | 79220367 | 79219792 | ID=MS.gene76227.t1.exon15;Parent=MS.gene76227.t1 |
chr1.1 | CDS | 79219792 | 79220367 | 79219792 | ID=cds.MS.gene76227.t1;Parent=MS.gene76227.t1 |
chr1.1 | exon | 79220447 | 79220716 | 79220447 | ID=MS.gene76227.t1.exon16;Parent=MS.gene76227.t1 |
chr1.1 | CDS | 79220447 | 79220716 | 79220447 | ID=cds.MS.gene76227.t1;Parent=MS.gene76227.t1 |
chr1.1 | exon | 79221224 | 79221268 | 79221224 | ID=MS.gene76227.t1.exon17;Parent=MS.gene76227.t1 |
chr1.1 | CDS | 79221224 | 79221268 | 79221224 | ID=cds.MS.gene76227.t1;Parent=MS.gene76227.t1 |
chr1.1 | exon | 79222889 | 79223074 | 79222889 | ID=MS.gene76227.t1.exon18;Parent=MS.gene76227.t1 |
chr1.1 | CDS | 79222889 | 79223074 | 79222889 | ID=cds.MS.gene76227.t1;Parent=MS.gene76227.t1 |
chr1.1 | exon | 79223245 | 79223535 | 79223245 | ID=MS.gene76227.t1.exon19;Parent=MS.gene76227.t1 |
chr1.1 | CDS | 79223245 | 79223535 | 79223245 | ID=cds.MS.gene76227.t1;Parent=MS.gene76227.t1 |
Gene Sequence |
Protein sequence |