AlfalfaGEDB | MS.gene071457

M. sativa cultivar XinJiangDaYe / MS.gene071457

KEGG: K15601
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071457.t1	RHN80785.1	96.5	113	4	0	1	113	738	850	2.00E-54	221.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071457.t1	A0A072VN67	96.5	113	4	0	1	113	669	781	1.5e-54	221.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene071457	0.818959	1.49E-52	-1.69E-46
MS.gene049159	MS.gene071457	0.812188	4.81E-51	-1.69E-46
MS.gene049254	MS.gene071457	0.822841	1.91E-53	-1.69E-46
MS.gene049343	MS.gene071457	0.801892	7.27E-49	-1.69E-46
MS.gene049404	MS.gene071457	0.834363	3.13E-56	-1.69E-46
MS.gene049435	MS.gene071457	0.843276	1.55E-58	-1.69E-46
MS.gene049850	MS.gene071457	0.830159	3.44E-55	-1.69E-46
MS.gene050020	MS.gene071457	0.800829	1.20E-48	-1.69E-46
MS.gene050137	MS.gene071457	0.800629	1.32E-48	-1.69E-46
MS.gene050156	MS.gene071457	0.804827	1.79E-49	-1.69E-46
MS.gene05016	MS.gene071457	0.810244	1.27E-50	-1.69E-46
MS.gene050442	MS.gene071457	0.814615	1.41E-51	-1.69E-46
MS.gene050559	MS.gene071457	0.806789	6.94E-50	-1.69E-46
MS.gene050561	MS.gene071457	0.810901	9.15E-51	-1.69E-46
MS.gene050562	MS.gene071457	0.804193	2.43E-49	-1.69E-46
MS.gene050807	MS.gene071457	0.807318	5.36E-50	-1.69E-46
MS.gene051198	MS.gene071457	0.810394	1.18E-50	-1.69E-46
MS.gene051247	MS.gene071457	0.832897	7.27E-56	-1.69E-46
MS.gene051279	MS.gene071457	0.822093	2.85E-53	-1.69E-46
MS.gene051332	MS.gene071457	0.809663	1.69E-50	-1.69E-46
MS.gene051719	MS.gene071457	0.822924	1.83E-53	-1.69E-46
MS.gene051720	MS.gene071457	0.832407	9.62E-56	-1.69E-46
MS.gene051744	MS.gene071457	0.830075	3.60E-55	-1.69E-46
MS.gene051957	MS.gene071457	0.81846	1.94E-52	-1.69E-46
MS.gene052012	MS.gene071457	0.812221	4.73E-51	-1.69E-46
MS.gene052020	MS.gene071457	0.817372	3.41E-52	-1.69E-46
MS.gene052190	MS.gene071457	0.808688	2.74E-50	-1.69E-46
MS.gene052323	MS.gene071457	0.837878	4.01E-57	-1.69E-46
MS.gene052519	MS.gene071457	0.820484	6.69E-53	-1.69E-46
MS.gene052582	MS.gene071457	0.836798	7.58E-57	-1.69E-46
MS.gene052584	MS.gene071457	0.83483	2.39E-56	-1.69E-46
MS.gene052611	MS.gene071457	0.828403	9.16E-55	-1.69E-46
MS.gene052773	MS.gene071457	0.830981	2.16E-55	-1.69E-46
MS.gene052843	MS.gene071457	0.807832	4.17E-50	-1.69E-46
MS.gene052863	MS.gene071457	0.824514	7.74E-54	-1.69E-46
MS.gene053166	MS.gene071457	0.84162	4.25E-58	-1.69E-46
MS.gene053221	MS.gene071457	0.823132	1.63E-53	-1.69E-46
MS.gene053226	MS.gene071457	0.863846	1.86E-64	-1.69E-46
MS.gene053599	MS.gene071457	0.800877	1.17E-48	-1.69E-46
MS.gene053953	MS.gene071457	0.803579	3.26E-49	-1.69E-46
MS.gene053966	MS.gene071457	0.805574	1.25E-49	-1.69E-46
MS.gene05415	MS.gene071457	0.819926	8.99E-53	-1.69E-46
MS.gene054236	MS.gene071457	0.803986	2.68E-49	-1.69E-46
MS.gene05423	MS.gene071457	0.801115	1.05E-48	-1.69E-46
MS.gene054291	MS.gene071457	-0.801184	1.01E-48	-1.69E-46
MS.gene054467	MS.gene071457	0.82708	1.91E-54	-1.69E-46
MS.gene054468	MS.gene071457	0.816427	5.56E-52	-1.69E-46
MS.gene054472	MS.gene071457	0.802499	5.45E-49	-1.69E-46
MS.gene05447	MS.gene071457	0.813578	2.38E-51	-1.69E-46
MS.gene054559	MS.gene071457	0.822578	2.20E-53	-1.69E-46
MS.gene05458	MS.gene071457	0.802174	6.36E-49	-1.69E-46
MS.gene054651	MS.gene071457	0.843659	1.22E-58	-1.69E-46
MS.gene054775	MS.gene071457	0.832242	1.06E-55	-1.69E-46
MS.gene055227	MS.gene071457	0.814653	1.38E-51	-1.69E-46
MS.gene055228	MS.gene071457	0.816795	4.60E-52	-1.69E-46
MS.gene055356	MS.gene071457	0.809883	1.52E-50	-1.69E-46
MS.gene055357	MS.gene071457	0.821318	4.30E-53	-1.69E-46
MS.gene055512	MS.gene071457	0.818077	2.37E-52	-1.69E-46
MS.gene055586	MS.gene071457	0.804837	1.78E-49	-1.69E-46
MS.gene055778	MS.gene071457	0.80665	7.42E-50	-1.69E-46
MS.gene055818	MS.gene071457	0.841698	4.06E-58	-1.69E-46
MS.gene055926	MS.gene071457	0.824965	6.07E-54	-1.69E-46
MS.gene05604	MS.gene071457	0.849909	2.39E-60	-1.69E-46
MS.gene056050	MS.gene071457	0.850357	1.79E-60	-1.69E-46
MS.gene056173	MS.gene071457	0.834715	2.55E-56	-1.69E-46
MS.gene056308	MS.gene071457	0.812362	4.40E-51	-1.69E-46
MS.gene056366	MS.gene071457	0.838188	3.34E-57	-1.69E-46
MS.gene056506	MS.gene071457	0.805819	1.11E-49	-1.69E-46
MS.gene056553	MS.gene071457	0.802133	6.48E-49	-1.69E-46
MS.gene056595	MS.gene071457	0.803425	3.51E-49	-1.69E-46
MS.gene05686	MS.gene071457	0.800775	1.23E-48	-1.69E-46
MS.gene05690	MS.gene071457	0.803311	3.70E-49	-1.69E-46
MS.gene057026	MS.gene071457	0.820753	5.81E-53	-1.69E-46
MS.gene057060	MS.gene071457	0.818276	2.13E-52	-1.69E-46
MS.gene057208	MS.gene071457	0.815779	7.76E-52	-1.69E-46
MS.gene057444	MS.gene071457	0.815735	7.94E-52	-1.69E-46
MS.gene057693	MS.gene071457	0.820114	8.14E-53	-1.69E-46
MS.gene057855	MS.gene071457	0.803091	4.11E-49	-1.69E-46
MS.gene057869	MS.gene071457	0.805528	1.28E-49	-1.69E-46
MS.gene057915	MS.gene071457	0.842127	3.13E-58	-1.69E-46
MS.gene058010	MS.gene071457	0.803963	2.71E-49	-1.69E-46
MS.gene058625	MS.gene071457	0.850087	2.13E-60	-1.69E-46
MS.gene058636	MS.gene071457	0.800163	1.64E-48	-1.69E-46
MS.gene058829	MS.gene071457	0.810874	9.28E-51	-1.69E-46
MS.gene058979	MS.gene071457	0.841479	4.64E-58	-1.69E-46
MS.gene05954	MS.gene071457	0.809773	1.60E-50	-1.69E-46
MS.gene059625	MS.gene071457	0.813191	2.90E-51	-1.69E-46
MS.gene059725	MS.gene071457	0.817684	2.90E-52	-1.69E-46
MS.gene05973	MS.gene071457	0.803746	3.01E-49	-1.69E-46
MS.gene059842	MS.gene071457	0.816099	6.58E-52	-1.69E-46
MS.gene060322	MS.gene071457	0.809025	2.32E-50	-1.69E-46
MS.gene060521	MS.gene071457	0.806474	8.08E-50	-1.69E-46
MS.gene060572	MS.gene071457	0.807052	6.10E-50	-1.69E-46
MS.gene060587	MS.gene071457	0.80619	9.28E-50	-1.69E-46
MS.gene060803	MS.gene071457	0.824102	9.68E-54	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene071457.t1	MTR_1g083120	96.460	113	4	1	113	669	781	2.31e-69	222
MS.gene071457.t1	MTR_1g083120	96.460	113	4	1	113	669	781	2.52e-69	222
MS.gene071457.t1	MTR_1g083120	96.460	113	4	1	113	669	781	3.12e-69	223
MS.gene071457.t1	MTR_1g083120	96.460	113	4	1	113	686	798	3.28e-69	223

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 0 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATATTTAAAAATGCATTGGA+AGG	-	10875:454-473	MS.gene071457:CDS	20.0%
!!	CTGAATATTTAAAAATGCAT+TGG	-	10875:450-469	MS.gene071457:CDS	20.0%
!!!	TCCATTAATTTTTGTACAAA+AGG	+	10875:249-268	MS.gene071457:intergenic	20.0%
!!!	TCCTTTTGTACAAAAATTAA+TGG	-	10875:245-264	MS.gene071457:CDS	20.0%
!	GAAATTCCATTAAGAGAAAA+TGG	-	10875:356-375	MS.gene071457:CDS	25.0%
!	TTTAAATATTCAGTCACCTT+TGG	+	10875:443-462	MS.gene071457:intergenic	25.0%
!!	TTGTACAAAAATTAATGGAC+TGG	-	10875:250-269	MS.gene071457:CDS	25.0%
!!	TTTTGTACAAAAGGATGAAT+CGG	+	10875:240-259	MS.gene071457:intergenic	25.0%
!!!	AAAAATTAATGGACTGGATT+TGG	-	10875:256-275	MS.gene071457:CDS	25.0%
	AAAATGCATTGGAAGGAATT+TGG	-	10875:461-480	MS.gene071457:CDS	30.0%
	AAATGCATTGGAAGGAATTT+GGG	-	10875:462-481	MS.gene071457:CDS	30.0%
	TTTGTACAAAAGGATGAATC+GGG	+	10875:239-258	MS.gene071457:intergenic	30.0%
!	AAGTTTATTCTAGTGCTGAA+GGG	-	10875:318-337	MS.gene071457:CDS	30.0%
	AAAGATTCGACTATGGATCA+AGG	-	10875:290-309	MS.gene071457:CDS	35.0%
	AAGATTCGACTATGGATCAA+GGG	-	10875:291-310	MS.gene071457:CDS	35.0%
!	ACGTCTCCATTTTCTCTTAA+TGG	+	10875:365-384	MS.gene071457:intergenic	35.0%
!	GAAGTTTATTCTAGTGCTGA+AGG	-	10875:317-336	MS.gene071457:CDS	35.0%
	AACACATCCTGGAGTTCTTT+GGG	-	10875:394-413	MS.gene071457:CDS	40.0%
	AGACCAGAAAGATTCGACTA+TGG	-	10875:283-302	MS.gene071457:CDS	40.0%
	AGATTCGACTATGGATCAAG+GGG	-	10875:292-311	MS.gene071457:CDS	40.0%
	CTCGCTCTTGAACATATATC+TGG	+	10875:212-231	MS.gene071457:intergenic	40.0%
	GAAAACTTCCAAGGAATCTG+AGG	-	10875:166-185	MS.gene071457:CDS	40.0%
	GATCCATAGTCGAATCTTTC+TGG	+	10875:289-308	MS.gene071457:intergenic	40.0%
	TAACACATCCTGGAGTTCTT+TGG	-	10875:393-412	MS.gene071457:CDS	40.0%
!	TTCTAGTGCTGAAGGGAATT+TGG	-	10875:325-344	MS.gene071457:CDS	40.0%
!!	TTCTTTGGGATGTCTTTCGT+CGG	-	10875:408-427	MS.gene071457:CDS	40.0%
	AAGACATCCCAAAGAACTCC+AGG	+	10875:404-423	MS.gene071457:intergenic	45.0%
	CTGAGGCGAAAGAATCTCAT+GGG	-	10875:183-202	MS.gene071457:CDS	45.0%
	TGAGGCGAAAGAATCTCATG+GGG	-	10875:184-203	MS.gene071457:CDS	45.0%
	TTCTTTCGCCTCAGATTCCT+TGG	+	10875:177-196	MS.gene071457:intergenic	45.0%
!	TCTGAGGCGAAAGAATCTCA+TGG	-	10875:182-201	MS.gene071457:CDS	45.0%
!!	GTCTCTGAGATAACACATCC+TGG	-	10875:383-402	MS.gene071457:CDS	45.0%
	TCGTCGGCAGGATGTTCCAA+AGG	-	10875:424-443	MS.gene071457:CDS	55.0%
	TTGGGATGTCTTTCGTCGGC+AGG	-	10875:412-431	MS.gene071457:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
10875	gene	161	499	161	ID=MS.gene071457
10875	mRNA	161	499	161	ID=MS.gene071457.t1;Parent=MS.gene071457
10875	exon	161	499	161	ID=MS.gene071457.t1.exon1;Parent=MS.gene071457.t1
10875	CDS	161	499	161	ID=cds.MS.gene071457.t1;Parent=MS.gene071457.t1

Gene Sequence	>MS.gene071457 ATGCAGAAAACTTCCAAGGAATCTGAGGCGAAAGAATCTCATGGGGATCCAGATATATGTTCAAGAGCGAGTTCACCCGATTCATCCTTTTGTACAAAAATTAATGGACTGGATTTGGAATCAGACCAGAAAGATTCGACTATGGATCAAGGGGTTGAAGTTTATTCTAGTGCTGAAGGGAATTTGGTCAATTGTGAAATTCCATTAAGAGAAAATGGAGACGTCTCTGAGATAACACATCCTGGAGTTCTTTGGGATGTCTTTCGTCGGCAGGATGTTCCAAAGGTGACTGAATATTTAAAAATGCATTGGAAGGAATTTGGGAAGTCAGATGATATA
Protein sequence	>MS.gene071457.t1 MQKTSKESEAKESHGDPDICSRASSPDSSFCTKINGLDLESDQKDSTMDQGVEVYSSAEGNLVNCEIPLRENGDVSEITHPGVLWDVFRRQDVPKVTEYLKMHWKEFGKSDDI