AlfalfaGEDB | MS.gene33624

M. sativa cultivar XinJiangDaYe / MS.gene33624

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00515.31 PF07719.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33624.t1	XP_013466466.1	98.8	171	2	0	6	176	28	198	2.10E-66	261.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33624.t1	Q5M990	39.8	83	50	0	28	110	53	135	1.5e-09	64.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33624.t1	A0A072VFD8	98.8	171	2	0	6	176	28	198	1.5e-66	261.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene33624	0.820557	6.44E-53	-1.69E-46
MS.gene049254	MS.gene33624	0.835457	1.66E-56	-1.69E-46
MS.gene049272	MS.gene33624	0.83852	2.74E-57	-1.69E-46
MS.gene049404	MS.gene33624	0.848492	5.92E-60	-1.69E-46
MS.gene049435	MS.gene33624	0.821311	4.32E-53	-1.69E-46
MS.gene049501	MS.gene33624	0.825479	4.58E-54	-1.69E-46
MS.gene049669	MS.gene33624	0.806281	8.88E-50	-1.69E-46
MS.gene049824	MS.gene33624	0.803476	3.42E-49	-1.69E-46
MS.gene049825	MS.gene33624	0.804672	1.93E-49	-1.69E-46
MS.gene049850	MS.gene33624	0.819692	1.02E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33624.t1	MTR_1g029720	96.571	175	6	0	2	176	24	198	2.01e-123	346
MS.gene33624.t1	MTR_7g059150	27.941	136	90	2	6	133	66	201	2.37e-13	66.6
MS.gene33624.t1	MTR_2g090135	28.244	131	86	2	16	138	79	209	2.86e-12	63.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33624.t1	AT1G77230	60.241	166	64	1	10	173	49	214	1.01e-62	193

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Find 31 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGAAGAATACCATAGCA+AGG	0.632891	1.1:-15382087	None:intergenic
AAGCTTTCGATAGCATTATC+TGG	0.386488	1.1:-15386160	None:intergenic
ACTCAACATGATTCTTCTGA+TGG	0.523720	1.1:+15381992	MS.gene33624:CDS
AGAAAGCAACTTCACTCATC+AGG	0.449250	1.1:+15386450	MS.gene33624:CDS
AGATGCTTGGAATGCTTTAA+AGG	0.240159	1.1:+15384653	MS.gene33624:CDS
ATAAGAATGAAAGCTCATGA+AGG	0.628762	1.1:+15386508	MS.gene33624:CDS
ATAGAGAAGCATTGGGTAAA+TGG	0.246957	1.1:+15384556	MS.gene33624:CDS
ATGGGAAGCTGCTCTTACAT+TGG	0.523234	1.1:+15384575	MS.gene33624:CDS
ATTCAAAATCGTTATACTGT+AGG	0.507862	1.1:+15386483	MS.gene33624:CDS
ATTGAAACCATCGTGGGCTG+AGG	0.582367	1.1:+15385048	MS.gene33624:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAACTATAGACAAGACAA+AGG	-	chr1.1:15384003-15384022	None:intergenic	30.0%
ACAACCGTAGATTAATTATG+GGG	+	chr1.1:15381421-15381440	MS.gene33624:intron	30.0%
AGGGTACAATTGAAAAGAAA+AGG	+	chr1.1:15385766-15385785	MS.gene33624:intron	30.0%
ATTATAAACTAGGTGACACT+TGG	-	chr1.1:15382165-15382184	None:intergenic	30.0%
ATTCGAATAATGTCAATGGT+AGG	-	chr1.1:15386256-15386275	None:intergenic	30.0%
ATTGAAATAAATGCTTGCAC+TGG	-	chr1.1:15386084-15386103	None:intergenic	30.0%
ATTTCCCCTTAATTATCTTG+TGG	+	chr1.1:15381780-15381799	MS.gene33624:intron	30.0%
CACAATATCACAAACACATA+TGG	-	chr1.1:15385266-15385285	None:intergenic	30.0%
CACTAGTTAAGACCTTTATA+AGG	+	chr1.1:15383776-15383795	MS.gene33624:intron	30.0%
CCAAACAAATAAAGTCTGAT+TGG	-	chr1.1:15384931-15384950	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	15380777	15386527	15380777	ID=MS.gene33624
chr1.1	mRNA	15380777	15386527	15380777	ID=MS.gene33624.t1;Parent=MS.gene33624
chr1.1	exon	15380777	15380791	15380777	ID=MS.gene33624.t1.exon1;Parent=MS.gene33624.t1
chr1.1	CDS	15380777	15380791	15380777	ID=cds.MS.gene33624.t1;Parent=MS.gene33624.t1
chr1.1	exon	15381974	15382096	15381974	ID=MS.gene33624.t1.exon2;Parent=MS.gene33624.t1
chr1.1	CDS	15381974	15382096	15381974	ID=cds.MS.gene33624.t1;Parent=MS.gene33624.t1
chr1.1	exon	15384546	15384684	15384546	ID=MS.gene33624.t1.exon3;Parent=MS.gene33624.t1
chr1.1	CDS	15384546	15384684	15384546	ID=cds.MS.gene33624.t1;Parent=MS.gene33624.t1
chr1.1	exon	15385038	15385069	15385038	ID=MS.gene33624.t1.exon4;Parent=MS.gene33624.t1
chr1.1	CDS	15385038	15385069	15385038	ID=cds.MS.gene33624.t1;Parent=MS.gene33624.t1
chr1.1	exon	15386118	15386204	15386118	ID=MS.gene33624.t1.exon5;Parent=MS.gene33624.t1
chr1.1	CDS	15386118	15386204	15386118	ID=cds.MS.gene33624.t1;Parent=MS.gene33624.t1
chr1.1	exon	15386393	15386527	15386393	ID=MS.gene33624.t1.exon6;Parent=MS.gene33624.t1
chr1.1	CDS	15386393	15386527	15386393	ID=cds.MS.gene33624.t1;Parent=MS.gene33624.t1

Gene Sequence

>MS.gene33624

ATGATTTTAGTTCACGTAAACTCTAAAACTAGAATTCTAAACATGTATATAAATTGAGTTCACTGATAATTCACAAGCAAAGGAAAAAAAAAAAAACAGCATAGAAAATCATCATTTTTTTTTCAAGGAAAATAGAAAATCATCGTTGAAAATACAGAAATTCAATTACCTATCCAATAGAATATTAATGAAAGACATTGTGATTCAATATTAATCTTTTATTGAAATTGATCATATATTCATGGATTTTTTCTGAAAGAGAGTGTGTGAAGATTTGAAGTGCGGAGATAAATAAAATCTATCTAAAAATTGCTTTTACAAAATCAAATTTGATACTCCATCCACCTCAAAATAATTCTCTTATAACATTTTTTCTATATTTCAAAATAATTGTCACTTTAAAATATCAATATCACATTTATTAATTTTTTACATTATAATACCCTTATTTATTGAATTTCATTCAACTTAGTTACACCAATAACTACAATAAAAAGAATATTTTAATACATATACTAATTTAATCATTGAAATCAACTAAATTAATCATTTTCTTATAAATCATGCACAAACCTTAATTTGATTATTCATTTAAAATAAATGTTAGTTTAATTAAAAGAGAGAAATAAATTATTATTAAAATGACAACCGTAGATTAATTATGGGGTAATAGTCACTTTGGTTCCTGAATGTGCATCAAGTAATCACAATAGTCCTTCAATGTATCAAAATATCAAAATAGTCCTTGATTGTCCACTTTGTTAGTCAAAATAATCCCTAAAGCTTAAATAACCTCTTAATACTCACAATAACTCTTTTGATATAAGGACTAAAATGACAATAAGTAAGTACGTATAAGGACTAATATGACAATATTAACGAAATATTTTAATATCAAGGACTATTTTGACTAACAAAGTGCACAATCATAACTATTTTGCCATTTCGATACATTGAAGGACTATTATGACTACTCGTCACTCATTCAACGACCAAAGTGACTATTTCCCCTTAATTATCTTGTGGAACAAATTTTAGATTATCAAAATTTTGTTTTGGTTGTGATTAAACTTTTTGCTTAGGAACAGTGAAGAAGAGAAGAGGTAGGCCGTGAAAATGAAAGTAACATGGAAGAACACGAAGAAGAAGAAACCTTGTTTACCCTCTTTATCACACTTCACCGACCTTCCTTTTGAGCAAGACAACGACACTACTACTCAACATGATTCTTCTGATGGAACAACCGTTCGTTCTACCGATTCTGAACAATCATCACAATTAGCTACGCAGTTTCAAACTCAAGGAGACAACCTTGCTATGGTATTCTTCTGTTCTGTTCTTTTATGTTTTTGTTTTTGTTGGGATATAATTCTGAAATTCAGTAACCAAGTGTCACCTAGTTTATAATTTATACGAAAGTTTTGTTCTTTGCTGTTATTACCAGTTAGAGTTATCATCAGGCTCGTTGGGTAGTTCAACTGGTTTGAGTTAAAATTGAGTAACGTAACAAATAATTACTAACATTTGTCATTAAAAAAAAAAAAACTTAATTTACAGCTTATAGCATAAGCGCTTATGTCTAAGCTATTTTTTTGTAGTTGATAAAAGCTATTTCTATAACAAAAGATAAAGTAAAGTAAAGTTGTTTCCGTGTAACCTATACTTATAGGCTGTTTTCATAAGCTATCTTCAAGAAGTTATGAAAATAAGCTAACAAAAGCTTATGTACATGTCATAAGTTGTTTTCATAAGTTCTCCTGAACAGTGTCACAATTGCTTATGCCAATAGATAAGTTCAAATAAGTCAATCTAAATAGACTCTTGATTTAAACTCGAGCCACACTCTTTGAATCCTATGCAGTCCAGTAGCAGCCTACCCTTAAAACGCTGTAGCAATATAGCAAGTAGTGGCATACAGGATTTTTAAATAGGGGCTGCGATAACAATTGCAGTCACATGGTGATCCTTGACATCACACGGTTGTGTTGTGCTTTCGGAAACATAAAAAACTGTTGTTTCACAGCCCAGTTCGCGGCCGCAAACCTTTTTTAAGAACCCTGATGCATACCGCTACACTGAAGTTTAGGGAAACAATACAATGAATTTATACCATAGTACATTGCACATATAAAAGATAAGAAATAGAAGAATAGACAAAATTGAAGACACATTCATTACTAATAATCAAAGATCATTGCTAACAAATTCAAACTAATATATTGATTACGTGCGTTTTCTGTACTTTGGATAACATATTAATTTCATTTCTTAAATGAAAGAATGCTTGAACAGATTCATGACAATGGTCTTAAGTTGTTTAATGCTTGAGTTTATTTAGATAAGTGAAATTTTGGTGTTAAAGGTTTGCTAGTTGCTAGTGCTGCTGTTACCTTCATTTTATTTTCATAGATCTAATTTCAGAGTTCTTTCTTAATGTTTAATTATTTCAAACCCCAACATTTGGTTTTAGATTAACTTCTGTTGGTTTGAATCTGACGAATTCTGTACAGCTCTTTGAGCTATGTTTGTAATTGAAATTTTGTTCCTTAAGGAAGGCCTCAAGTAACAAAAGTTCGCTTGCCATTGTCATTGATAGTTTGTAGTATTAATAGTACTTGAAGATCTTTTTACAAGCTTAACCGAAAGTACAGGCTTTCATTCTAGTTCCTAAAATTCAGGGGAATATTCTAACTGCATAACCATATCACTACAATCATATAACCTTATTCTAGAAGCTTTTGTAATCTTCCATCCATTTTGGCATCTTCCTCTCCCATGCATGCTGTTGTATGCATTTTGGTACTGTGCTCTGCAGTTTCACTAGGCCCATTTGTTTTTGAGACTTGAGACCTCTTTAATCCTTTTGGGCCCATTTCCTGTTGAGTCTTCCTGATTCACTTTTCTGGCCCATTTACCACCTCTTAGCATCGTATCACTTTCTGAGCTATGTTCAAAGTTGATTTTATTTATATGGGAAATGTTAACCAGTGCCCCTGGGGCACTAGTTAAGACCTTTATAAGGTAACTTATCATGAAAATACGTGTAATCAGTGCATTGGAAATCAAAATGTTTGACTTTTTTATAAAATAATTTCTTCTTTTAGAATCCTTAAAGAGTGCCCCGGGGGTACTCGTTAACAAGACCCGACCCTATTTATATTTTTAAAACCTTATAGTTGTTCGAATGATCAGTCACATTAATTAATAAGACTAGTACACATGTCCTTTGTCTTGTCTATAGTTTGTTTTTTGAGTGATGTTGATTTTCCTCCTCTGTGGACTTTGAACCGCCACCACGAAATCGATATGGCACCCTGTGTAATGCCATATAAAGCACAAACACTATTTTGGTGTCATATGTGCATGTCTGATGTGCATCAGATAGACATAACATGCACTGATGATTTGTGTCCAACAAACACCTCAGTATGTTTCCGACTTAAATTAGTATTATTAGCTCTAATATGGCATGCCACAACATTTAACAGGAAGAAAAGAAATTAAAAAATGGGCCTGTTTTAATCTTTTAAGAGAACTTTAATTCTAAAAAGAAAAGCAGGACAAATGCTTTTGTCATTTTTCAATTTCATACTCTCCATCTTCTTCACTTCAATTTGACATATATCATTATGAATGTTTTTCCCGAAGTTTTCAATTATATATGTCATGTTCATGTCTTACAAGTTTTAGAATAGTGTGTTATCCATGTCATGTCATATGCTGTGTCATTGTCTATGCTTCGTAGTTAATACCACCATCTTTGTTGCAGGAGGGGAAGTATAGAGAAGCATTGGGTAAATGGGAAGCTGCTCTTACATTGGCACCTGATGTTCCAGCTTTGCATGAACAGAAGGCCCAAGTTTTACTAGAAATCGGAGATGCTTGGAATGCTTTAAAGGCTGCAAGTCGTGCGTCTGCGCTGCTATTATATTCTTCTTAACTGTTTTATTTAAATTTTAATGTAGACTAAATGAAATGCTAAAAGTTGAAATTAATAAATTAATGATAAGTCATAACGAATGAACTGTTTCTTGACGTGTAATTTGAACATACTGAAGTAAGTTGTTTTATGAAGCTCGTCTTTTCCTATATAAACTATATAATCAGTTGTGATGAACTTAATTTTGGCAATGGAGTATATCTGTTTTGTGCCAATCAGACTTTATTTGTTTGGGGTTTGGCTTCTGATGTTTGTTATAGAATTTAAATTCTTAGTAGTTTTTTACTTGGTATATGATAATTGACGGTCTCTGCATGGCAGGAGCTACTGAATTGAAACCATCGTGGGCTGAGGTACGACATTCTGTTATTTGCATACCCTCTGTAAAATTTATTCACATGATTTTTGTCATTACCTCTATGTATGTGTATAATCTTTGTACTCCATTTTCTCAATTAGTTTTAATTATAAAACTATAGCTTAGTTATGGATGAGTGTCATTTGATGATAATTCACTAGTTCTTAAACTTCATTGAGAAAGGTTGACCATATGTGTTTGTGATATTGTGCATATAATTGGGTTTCCGCATCATGATCTCTATATTTTGACATGCATTTGGTATAAATTCACTATGCTTATATTTTGATATTAAATACTCTCTCCGTCCCATAATAATTGTCAAATTTGCACAAAAAAAAAACTGTCTCAAAATGAAGTCACTTTCAATTTTCAATGTAATACTTTTTTTTCTTCAAATTGTACCATTTAATTAAAATACCATGTGCATCGCTCACTCCTAACTCAATATTTTCCACTTTTCATTTACAGTCCTAACGAGTAACGAGTACACCAATACTTAAAAAAGGTTAATTTGGTAAAATTATACTCCCTCCGTTTCAAAATGAGTGTCGTTTTAGGTGTTTACACACATATTAAGAAATACAATGATTAAGAGAAAGAGATTGGTTATTTTACCAAATTATCCTTATTAACTATTGGTTAGTTTTAAAAGTAATACTTTGGAAGTAGTGTGCAGAGTATTAATTGGAGGGTACAATTGAAAAGAAAAGGTTATTATTGCATTGGAAACTGAAAGCGACACTCATTTTGAAACAAATTTTTTTGACTAAAGCGACACTCATTTTGAAACGGAGGGAGTAATTCTCTTTCTTTTATTATACTCTTTTCTTAATCTTCATGAAATAAACAAGTGTGCCAATTATTGTGGCACGGAGGGAGTGCTTTGCAAACTTAGTTTATCTGTAAGGACTAGTCTAAGCTAGCATAACATCTGATAGTCTAAGCATTTACCACTGTTCATACCAAATAATACTAGAGCAGTTATAGTTCATTTCTACGTCTCCCAGTGCAAGCATTTATTTCAATATTAATCCTTGCAGGCTTGGGTCACACTTGGCAGAGCGCAGCTGAATTATGGCGAGCCAGATAATGCTATCGAAAGCTTTGACAGAGCTTTAGCTCTCAAGGTCAGTCTTCATGAAGCTTGGCAATTGGTTTTAATGTTGCTCAAATTTCCTACCATTGACATTATTCGAATTCTAGTTTGCAGCTGGCACTTACGTATCCGTCTGTCAACTTTTGTCGTAAAAATCATTAAGTTGCAAAAATTTATAAATTATTTAAAAATTTATACAACTACTTTTTGGCTGTGCAGCCTGATTATGAAGAAGCACAAGATGATAGAAAAACCGCATCACGTCTAATAAAGAAGAGAAAGCAACTTCACTCATCAGGATTAAGTGAAATTCAAAATCGTTATACTGTAGGTGATAAGAATGAAAGCTCATGA

Protein sequence

>MS.gene33624.t1

MILVHQDNDTTTQHDSSDGTTVRSTDSEQSSQLATQFQTQGDNLAMEGKYREALGKWEAALTLAPDVPALHEQKAQVLLEIGDAWNALKAASRATELKPSWAEAWVTLGRAQLNYGEPDNAIESFDRALALKPDYEEAQDDRKTASRLIKKRKQLHSSGLSEIQNRYTVGDKNESS