Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06564.t1 | XP_024635313.1 | 97.2 | 778 | 21 | 1 | 1 | 777 | 1 | 778 | 0.00E+00 | 1521.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06564.t1 | Q8BTK5 | 23.4 | 806 | 462 | 26 | 7 | 735 | 18 | 745 | 4.7e-26 | 121.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06564.t1 | G7J9Q5 | 97.2 | 778 | 21 | 1 | 1 | 777 | 1 | 778 | 0.0e+00 | 1521.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene06564.t1 | TR | SET |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene06564 | 0.83988 | 1.22E-57 | -1.69E-46 |
| MS.gene049254 | MS.gene06564 | 0.804931 | 1.70E-49 | -1.69E-46 |
| MS.gene049404 | MS.gene06564 | 0.804891 | 1.74E-49 | -1.69E-46 |
| MS.gene049435 | MS.gene06564 | 0.923577 | 2.21E-89 | -1.69E-46 |
| MS.gene049501 | MS.gene06564 | 0.814181 | 1.76E-51 | -1.69E-46 |
| MS.gene049669 | MS.gene06564 | 0.80052 | 1.39E-48 | -1.69E-46 |
| MS.gene049850 | MS.gene06564 | 0.816128 | 6.49E-52 | -1.69E-46 |
| MS.gene050226 | MS.gene06564 | 0.809747 | 1.62E-50 | -1.69E-46 |
| MS.gene050227 | MS.gene06564 | 0.806105 | 9.67E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene06564 | 0.870395 | 1.51E-66 | -1.69E-46 |
| MS.gene050605 | MS.gene06564 | 0.812963 | 3.25E-51 | -1.69E-46 |
| MS.gene050623 | MS.gene06564 | -0.813125 | 3.00E-51 | -1.69E-46 |
| MS.gene050680 | MS.gene06564 | 0.815179 | 1.06E-51 | -1.69E-46 |
| MS.gene050719 | MS.gene06564 | 0.826655 | 2.41E-54 | -1.69E-46 |
| MS.gene050721 | MS.gene06564 | 0.821962 | 3.05E-53 | -1.69E-46 |
| MS.gene050724 | MS.gene06564 | 0.822038 | 2.93E-53 | -1.69E-46 |
| MS.gene050750 | MS.gene06564 | 0.838886 | 2.20E-57 | -1.69E-46 |
| MS.gene050759 | MS.gene06564 | 0.826734 | 2.31E-54 | -1.69E-46 |
| MS.gene050807 | MS.gene06564 | 0.809012 | 2.34E-50 | -1.69E-46 |
| MS.gene050844 | MS.gene06564 | 0.800105 | 1.68E-48 | -1.69E-46 |
| MS.gene050953 | MS.gene06564 | 0.843954 | 1.02E-58 | -1.69E-46 |
| MS.gene050962 | MS.gene06564 | 0.816184 | 6.30E-52 | -1.69E-46 |
| MS.gene051147 | MS.gene06564 | 0.818375 | 2.03E-52 | -1.69E-46 |
| MS.gene051198 | MS.gene06564 | 0.844079 | 9.44E-59 | -1.69E-46 |
| MS.gene051247 | MS.gene06564 | 0.800816 | 1.21E-48 | -1.69E-46 |
| MS.gene051800 | MS.gene06564 | 0.812814 | 3.51E-51 | -1.69E-46 |
| MS.gene052012 | MS.gene06564 | 0.821172 | 4.65E-53 | -1.69E-46 |
| MS.gene052020 | MS.gene06564 | 0.810904 | 9.14E-51 | -1.69E-46 |
| MS.gene052323 | MS.gene06564 | 0.810933 | 9.01E-51 | -1.69E-46 |
| MS.gene052333 | MS.gene06564 | 0.821926 | 3.11E-53 | -1.69E-46 |
| MS.gene052426 | MS.gene06564 | 0.805359 | 1.39E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene06564 | 0.805211 | 1.49E-49 | -1.69E-46 |
| MS.gene052611 | MS.gene06564 | 0.805377 | 1.37E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene06564 | 0.823482 | 1.35E-53 | -1.69E-46 |
| MS.gene052863 | MS.gene06564 | 0.807513 | 4.87E-50 | -1.69E-46 |
| MS.gene053008 | MS.gene06564 | 0.830055 | 3.64E-55 | -1.69E-46 |
| MS.gene053166 | MS.gene06564 | 0.820395 | 7.02E-53 | -1.69E-46 |
| MS.gene053201 | MS.gene06564 | 0.811424 | 7.05E-51 | -1.69E-46 |
| MS.gene053221 | MS.gene06564 | 0.804632 | 1.97E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene06564 | 0.825975 | 3.50E-54 | -1.69E-46 |
| MS.gene05414 | MS.gene06564 | 0.804039 | 2.62E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene06564 | 0.843232 | 1.59E-58 | -1.69E-46 |
| MS.gene054236 | MS.gene06564 | 0.812138 | 4.93E-51 | -1.69E-46 |
| MS.gene054291 | MS.gene06564 | -0.816314 | 5.89E-52 | -1.69E-46 |
| MS.gene054405 | MS.gene06564 | 0.833614 | 4.82E-56 | -1.69E-46 |
| MS.gene054467 | MS.gene06564 | 0.821133 | 4.75E-53 | -1.69E-46 |
| MS.gene054468 | MS.gene06564 | 0.812292 | 4.56E-51 | -1.69E-46 |
| MS.gene054472 | MS.gene06564 | 0.804728 | 1.88E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene06564 | 0.807514 | 4.87E-50 | -1.69E-46 |
| MS.gene054559 | MS.gene06564 | 0.815759 | 7.84E-52 | -1.69E-46 |
| MS.gene054657 | MS.gene06564 | 0.809965 | 1.46E-50 | -1.69E-46 |
| MS.gene054775 | MS.gene06564 | 0.804255 | 2.36E-49 | -1.69E-46 |
| MS.gene05510 | MS.gene06564 | 0.806626 | 7.51E-50 | -1.69E-46 |
| MS.gene055227 | MS.gene06564 | 0.816416 | 5.59E-52 | -1.69E-46 |
| MS.gene055356 | MS.gene06564 | 0.812468 | 4.18E-51 | -1.69E-46 |
| MS.gene055357 | MS.gene06564 | 0.803222 | 3.86E-49 | -1.69E-46 |
| MS.gene055608 | MS.gene06564 | 0.82278 | 1.97E-53 | -1.69E-46 |
| MS.gene055623 | MS.gene06564 | 0.808261 | 3.38E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene06564 | 0.81776 | 2.79E-52 | -1.69E-46 |
| MS.gene055778 | MS.gene06564 | 0.806467 | 8.11E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene06564 | 0.835707 | 1.43E-56 | -1.69E-46 |
| MS.gene055926 | MS.gene06564 | 0.831608 | 1.52E-55 | -1.69E-46 |
| MS.gene05604 | MS.gene06564 | 0.82146 | 3.99E-53 | -1.69E-46 |
| MS.gene056173 | MS.gene06564 | 0.850646 | 1.48E-60 | -1.69E-46 |
| MS.gene056174 | MS.gene06564 | 0.852001 | 6.15E-61 | -1.69E-46 |
| MS.gene056480 | MS.gene06564 | 0.802476 | 5.51E-49 | -1.69E-46 |
| MS.gene056498 | MS.gene06564 | 0.829377 | 5.33E-55 | -1.69E-46 |
| MS.gene056506 | MS.gene06564 | 0.848216 | 7.06E-60 | -1.69E-46 |
| MS.gene056873 | MS.gene06564 | 0.822781 | 1.97E-53 | -1.69E-46 |
| MS.gene057060 | MS.gene06564 | 0.807334 | 5.32E-50 | -1.69E-46 |
| MS.gene057200 | MS.gene06564 | 0.801331 | 9.47E-49 | -1.69E-46 |
| MS.gene057314 | MS.gene06564 | 0.822006 | 2.98E-53 | -1.69E-46 |
| MS.gene057444 | MS.gene06564 | 0.82676 | 2.27E-54 | -1.69E-46 |
| MS.gene057598 | MS.gene06564 | 0.802345 | 5.86E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene06564 | 0.810203 | 1.30E-50 | -1.69E-46 |
| MS.gene057855 | MS.gene06564 | 0.800573 | 1.35E-48 | -1.69E-46 |
| MS.gene057869 | MS.gene06564 | 0.848976 | 4.35E-60 | -1.69E-46 |
| MS.gene057915 | MS.gene06564 | 0.838399 | 2.94E-57 | -1.69E-46 |
| MS.gene058010 | MS.gene06564 | 0.814209 | 1.73E-51 | -1.69E-46 |
| MS.gene058146 | MS.gene06564 | 0.809451 | 1.88E-50 | -1.69E-46 |
| MS.gene058399 | MS.gene06564 | 0.806457 | 8.15E-50 | -1.69E-46 |
| MS.gene05847 | MS.gene06564 | 0.823033 | 1.72E-53 | -1.69E-46 |
| MS.gene058548 | MS.gene06564 | 0.827556 | 1.47E-54 | -1.69E-46 |
| MS.gene058625 | MS.gene06564 | 0.807756 | 4.33E-50 | -1.69E-46 |
| MS.gene058829 | MS.gene06564 | 0.801949 | 7.07E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene06564 | 0.831967 | 1.24E-55 | -1.69E-46 |
| MS.gene059128 | MS.gene06564 | 0.811296 | 7.52E-51 | -1.69E-46 |
| MS.gene059161 | MS.gene06564 | 0.803271 | 3.77E-49 | -1.69E-46 |
| MS.gene059283 | MS.gene06564 | 0.803611 | 3.21E-49 | -1.69E-46 |
| MS.gene059609 | MS.gene06564 | 0.804613 | 1.99E-49 | -1.69E-46 |
| MS.gene059725 | MS.gene06564 | 0.827675 | 1.37E-54 | -1.69E-46 |
| MS.gene05979 | MS.gene06564 | 0.813889 | 2.04E-51 | -1.69E-46 |
| MS.gene059842 | MS.gene06564 | 0.816786 | 4.62E-52 | -1.69E-46 |
| MS.gene060011 | MS.gene06564 | 0.817443 | 3.29E-52 | -1.69E-46 |
| MS.gene060137 | MS.gene06564 | -0.826458 | 2.68E-54 | -1.69E-46 |
| MS.gene060167 | MS.gene06564 | 0.827096 | 1.89E-54 | -1.69E-46 |
| MS.gene060322 | MS.gene06564 | 0.841122 | 5.75E-58 | -1.69E-46 |
| MS.gene06052 | MS.gene06564 | 0.842344 | 2.74E-58 | -1.69E-46 |
| MS.gene060634 | MS.gene06564 | -0.814274 | 1.67E-51 | -1.69E-46 |
| MS.gene060683 | MS.gene06564 | 0.821331 | 4.27E-53 | -1.69E-46 |
| MS.gene060685 | MS.gene06564 | 0.817842 | 2.67E-52 | -1.69E-46 |
| MS.gene060802 | MS.gene06564 | 0.854764 | 9.90E-62 | -1.69E-46 |
| MS.gene060803 | MS.gene06564 | 0.843154 | 1.67E-58 | -1.69E-46 |
| MS.gene060918 | MS.gene06564 | 0.802276 | 6.06E-49 | -1.69E-46 |
| MS.gene060998 | MS.gene06564 | 0.82544 | 4.68E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06564.t1 | MTR_3g093440 | 97.172 | 778 | 21 | 1 | 1 | 777 | 1 | 778 | 0.0 | 1558 |
| MS.gene06564.t1 | MTR_3g073000 | 22.118 | 321 | 189 | 10 | 459 | 766 | 182 | 454 | 3.77e-11 | 66.6 |
| MS.gene06564.t1 | MTR_3g073000 | 28.105 | 153 | 93 | 4 | 459 | 596 | 182 | 332 | 6.29e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06564.t1 | AT1G33400 | 44.949 | 792 | 416 | 7 | 1 | 776 | 1 | 788 | 0.0 | 684 |
| MS.gene06564.t1 | AT1G33400 | 44.800 | 750 | 394 | 7 | 43 | 776 | 55 | 800 | 0.0 | 664 |
| MS.gene06564.t1 | AT1G33400 | 44.320 | 625 | 328 | 7 | 168 | 776 | 2 | 622 | 0.0 | 539 |
Find 122 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGCCATTTGAAAGTAAAT+TGG | 0.199937 | 3.2:+78487838 | MS.gene06564:CDS |
| AACACTGCGCCAGAACAATT+TGG | 0.217761 | 3.2:-78489729 | None:intergenic |
| TTTGCCCACCTGCCTTTATT+TGG | 0.225137 | 3.2:-78487441 | None:intergenic |
| AGAAACTCAAACAAGCAATT+AGG | 0.229319 | 3.2:+78484292 | MS.gene06564:CDS |
| TATTGTCTTAAACATTCTTA+TGG | 0.241604 | 3.2:+78487890 | MS.gene06564:CDS |
| TATGAATAGAAGCGTCATTT+TGG | 0.260629 | 3.2:-78490050 | None:intergenic |
| TACTACTATATTTGTGCTCT+TGG | 0.267628 | 3.2:-78485603 | None:intergenic |
| TCATACAATTCACTTTAATC+TGG | 0.303169 | 3.2:-78488193 | None:intergenic |
| AAGCCTTAATATGCATAAAA+AGG | 0.306459 | 3.2:+78490142 | MS.gene06564:CDS |
| AGAAAATATGCATGAACATT+TGG | 0.324630 | 3.2:-78488570 | None:intergenic |
| ACTGCCTTCTGACATAGTTT+TGG | 0.338485 | 3.2:+78487624 | MS.gene06564:CDS |
| AAATTTGCATGCATACAATA+AGG | 0.339149 | 3.2:+78490444 | MS.gene06564:CDS |
| TTCATCCGTCCAACTTTACT+TGG | 0.341657 | 3.2:+78492025 | MS.gene06564:CDS |
| AGTGGGAGAATTACAATTAT+CGG | 0.343600 | 3.2:+78491082 | MS.gene06564:CDS |
| ACCATGCCTCTTCCTTTATC+AGG | 0.346989 | 3.2:-78486786 | None:intergenic |
| GAAACTCAAACAAGCAATTA+GGG | 0.353034 | 3.2:+78484293 | MS.gene06564:CDS |
| ATTGCTTGTTTGAGTTTCTC+TGG | 0.360886 | 3.2:-78484288 | None:intergenic |
| CACCTGCCTTTATTTGGCAT+TGG | 0.370556 | 3.2:-78487435 | None:intergenic |
| CTATATTTGTGCTCTTGGAT+TGG | 0.397564 | 3.2:-78485598 | None:intergenic |
| ACACTGCGCCAGAACAATTT+GGG | 0.399716 | 3.2:-78489728 | None:intergenic |
| TTCCTTATCTTCAGTACCTT+AGG | 0.401357 | 3.2:+78492129 | MS.gene06564:CDS |
| TGATATAGAGATTCCATTGA+TGG | 0.401639 | 3.2:-78487924 | None:intergenic |
| GGAGCTATGCTTGCCATCAA+TGG | 0.404119 | 3.2:+78487911 | MS.gene06564:CDS |
| CTCGCACCAATGCCAAATAA+AGG | 0.406668 | 3.2:+78487429 | MS.gene06564:CDS |
| GGCAAAGCTATTTATAAAGT+TGG | 0.408738 | 3.2:+78488522 | MS.gene06564:CDS |
| TTGTTTCTTACCATAGCATA+TGG | 0.409749 | 3.2:-78486855 | None:intergenic |
| AGCATATTCAGCAAGATTGT+TGG | 0.410224 | 3.2:-78487509 | None:intergenic |
| TCAATTTCACCAACTTCAAA+AGG | 0.415930 | 3.2:-78484722 | None:intergenic |
| TCATTGTAAAGCATCTATTC+AGG | 0.417681 | 3.2:+78491109 | MS.gene06564:CDS |
| TGTGTGAACCCAAATTGTTC+TGG | 0.426197 | 3.2:+78489720 | MS.gene06564:CDS |
| ATGCAGTTCTTACCGTGATC+TGG | 0.426263 | 3.2:+78490095 | MS.gene06564:CDS |
| ATTTCTAAATTTCTCTCCTA+AGG | 0.427458 | 3.2:-78492145 | None:intergenic |
| GCATATTCAGCAAGATTGTT+GGG | 0.430584 | 3.2:-78487508 | None:intergenic |
| CTCCTAAGGTACTGAAGATA+AGG | 0.430916 | 3.2:-78492131 | None:intergenic |
| GAATCCAATTTACTTTCAAA+TGG | 0.433870 | 3.2:-78487842 | None:intergenic |
| GTAGGTCGTTCAAGCAATAA+TGG | 0.435815 | 3.2:-78487360 | None:intergenic |
| CGATCTCAAAGCGTCTGAAA+TGG | 0.442918 | 3.2:-78490404 | None:intergenic |
| TTTAACTAGTAATGTGGAAC+AGG | 0.443391 | 3.2:+78488295 | MS.gene06564:CDS |
| GAACATTTGGTTGGCAAGAA+TGG | 0.445371 | 3.2:-78488557 | None:intergenic |
| AAATGTACACTGGAATGAAA+TGG | 0.446196 | 3.2:-78488275 | None:intergenic |
| ACAACACAAGCCGTAGCAGC+TGG | 0.447881 | 3.2:+78488615 | MS.gene06564:CDS |
| AATGATTGTGAGCAAAAGAT+TGG | 0.447994 | 3.2:+78487550 | MS.gene06564:CDS |
| GTAGTACGTACCTGGTGAAA+AGG | 0.449674 | 3.2:-78484381 | None:intergenic |
| CCGCCATCTGATGTTTCACC+AGG | 0.449958 | 3.2:+78486810 | MS.gene06564:CDS |
| GCCTCTTCCTTTATCAGGTA+CGG | 0.454469 | 3.2:-78486781 | None:intergenic |
| GCATTTCATTGTCAATGTAC+TGG | 0.457687 | 3.2:+78489651 | MS.gene06564:CDS |
| TTATGGACTTCATGCAGACT+TGG | 0.466543 | 3.2:+78492103 | MS.gene06564:CDS |
| GGAAAGGCAAATATTGCATT+GGG | 0.466884 | 3.2:+78485473 | MS.gene06564:CDS |
| TCTGGCATCAGGCATGGTAT+AGG | 0.467429 | 3.2:+78485447 | MS.gene06564:intron |
| AAACACACCTTTGAATAGCT+TGG | 0.472303 | 3.2:-78484980 | None:intergenic |
| CATACAATTCACTTTAATCT+GGG | 0.482197 | 3.2:-78488192 | None:intergenic |
| CATGGACTGTCAGATCAGTC+TGG | 0.483310 | 3.2:+78488245 | MS.gene06564:CDS |
| ACACTTTGCAGCTTTATTTG+AGG | 0.485080 | 3.2:-78486756 | None:intergenic |
| AATATGCATGAACATTTGGT+TGG | 0.489714 | 3.2:-78488566 | None:intergenic |
| AGTGTCTCCGTACCTGATAA+AGG | 0.493636 | 3.2:+78486774 | MS.gene06564:CDS |
| AAGAGTGTCGAATCATCAAC+AGG | 0.494373 | 3.2:+78485533 | MS.gene06564:CDS |
| TAAGCAATAACTATATCATC+AGG | 0.495058 | 3.2:-78491987 | None:intergenic |
| CGTAGCAGCTGGGTGTCAGC+TGG | 0.497449 | 3.2:+78488626 | MS.gene06564:CDS |
| GTCAACAGCATTGGTCGAAT+AGG | 0.497911 | 3.2:+78492062 | MS.gene06564:CDS |
| AAATTGTTCTGGCGCAGTGT+TGG | 0.499251 | 3.2:+78489731 | MS.gene06564:CDS |
| ATGTCAGAAGGCAGTACAGC+AGG | 0.510667 | 3.2:-78487616 | None:intergenic |
| GGCTTTAGATTATTATACTC+AGG | 0.514932 | 3.2:+78484584 | MS.gene06564:CDS |
| TGATGTTTCACCAGGTTCGT+TGG | 0.526556 | 3.2:+78486818 | MS.gene06564:CDS |
| TAGTACGTACCTGGTGAAAA+GGG | 0.527455 | 3.2:-78484380 | None:intergenic |
| CTCTAATGCTGATTATGTCA+AGG | 0.527726 | 3.2:+78484563 | MS.gene06564:CDS |
| TGTCAGCTGGAATTGTCTTA+CGG | 0.527745 | 3.2:+78488639 | MS.gene06564:CDS |
| AGGAAAGGCAAATATTGCAT+TGG | 0.532015 | 3.2:+78485472 | MS.gene06564:CDS |
| GGAATTGTCTTACGGTCCAC+AGG | 0.539785 | 3.2:+78488647 | MS.gene06564:CDS |
| TATTGTCACCCAAGTAAAGT+TGG | 0.540829 | 3.2:-78492034 | None:intergenic |
| TTAAAATCAATAGACGCTCA+TGG | 0.541128 | 3.2:+78488227 | MS.gene06564:CDS |
| AAGAACGTAATTATCTTCTG+TGG | 0.542033 | 3.2:-78487476 | None:intergenic |
| CAATGGAATCTCTATATCAC+AGG | 0.542199 | 3.2:+78487928 | MS.gene06564:CDS |
| TGCTGAAGAACCATATGCTA+TGG | 0.542990 | 3.2:+78486845 | MS.gene06564:CDS |
| GGAGAACAGCTTGAGTACTA+CGG | 0.546828 | 3.2:+78485640 | MS.gene06564:CDS |
| TTCCCGCACAGAGCATAGCT+AGG | 0.547122 | 3.2:-78484492 | None:intergenic |
| ATACAAGGAACTCTATCAGC+AGG | 0.548739 | 3.2:-78487382 | None:intergenic |
| CACCAATGCCAAATAAAGGC+AGG | 0.551316 | 3.2:+78487433 | MS.gene06564:CDS |
| TCATCCGTCCAACTTTACTT+GGG | 0.552845 | 3.2:+78492026 | MS.gene06564:CDS |
| CAGCTGACACCCAGCTGCTA+CGG | 0.561855 | 3.2:-78488625 | None:intergenic |
| AGTAGTACAGCCGCGACAGA+AGG | 0.563195 | 3.2:+78485619 | MS.gene06564:CDS |
| ACCCTAGCTATGCTCTGTGC+GGG | 0.563516 | 3.2:+78484490 | MS.gene06564:CDS |
| TCCGTACCTGATAAAGGAAG+AGG | 0.569385 | 3.2:+78486780 | MS.gene06564:CDS |
| GAGAACAGCTTGAGTACTAC+GGG | 0.569449 | 3.2:+78485641 | MS.gene06564:CDS |
| TCCCGCACAGAGCATAGCTA+GGG | 0.570994 | 3.2:-78484491 | None:intergenic |
| AATAGTGCTGTCAACAGCAT+TGG | 0.571018 | 3.2:+78492053 | MS.gene06564:CDS |
| TCAGCATGAACCAACGAACC+TGG | 0.571881 | 3.2:-78486828 | None:intergenic |
| GATATGTCCAAGCTATTCAA+AGG | 0.573360 | 3.2:+78484973 | MS.gene06564:CDS |
| CTGCATTTCAAACAGACTCC+AGG | 0.574365 | 3.2:-78490078 | None:intergenic |
| ATGAATGTCAAGGAGTGCAT+TGG | 0.576376 | 3.2:+78487593 | MS.gene06564:CDS |
| TTACTTTATCAGCAACAGCT+AGG | 0.576576 | 3.2:-78489794 | None:intergenic |
| GCTTCTATTCATATTCAACC+TGG | 0.579067 | 3.2:+78490060 | MS.gene06564:CDS |
| CAATGCCAAATAAAGGCAGG+TGG | 0.596184 | 3.2:+78487436 | MS.gene06564:CDS |
| CCAGCCAAAACTATGTCAGA+AGG | 0.604974 | 3.2:-78487628 | None:intergenic |
| TGTACATTTAACTAGTAATG+TGG | 0.607675 | 3.2:+78488289 | MS.gene06564:CDS |
| ATATGGAAATGACAGGCTGC+AGG | 0.608699 | 3.2:+78490348 | MS.gene06564:intron |
| TGAAATATAGGCATTACGAA+AGG | 0.609774 | 3.2:+78484697 | MS.gene06564:intron |
| ATTACTAGTTAAATGTACAC+TGG | 0.610954 | 3.2:-78488285 | None:intergenic |
| GAACATAAACATGAATGTCA+AGG | 0.620275 | 3.2:+78487583 | MS.gene06564:CDS |
| CATTGGTGCGAGCAGTACAA+TGG | 0.620389 | 3.2:-78487418 | None:intergenic |
| CAACACAAGCCGTAGCAGCT+GGG | 0.623688 | 3.2:+78488616 | MS.gene06564:CDS |
| ACCTGATAAAGGAAGAGGCA+TGG | 0.627081 | 3.2:+78486785 | MS.gene06564:CDS |
| GTGTCGAATCATCAACAGGA+GGG | 0.630754 | 3.2:+78485537 | MS.gene06564:CDS |
| GGTATTGAACACGATATACA+AGG | 0.636863 | 3.2:-78487397 | None:intergenic |
| GTCACCCAAGTAAAGTTGGA+CGG | 0.637144 | 3.2:-78492030 | None:intergenic |
| TATATCTCCTAGGTCAGAGT+GGG | 0.639961 | 3.2:+78488501 | MS.gene06564:intron |
| CACGTGAAGACTCCAGATCA+CGG | 0.641430 | 3.2:-78490107 | None:intergenic |
| GCGTTGAAATATAAGCAGCT+TGG | 0.647283 | 3.2:+78484528 | MS.gene06564:CDS |
| ATACAATAAGGTTATTGCAG+AGG | 0.648948 | 3.2:+78490456 | MS.gene06564:CDS |
| GACCCTAGCTATGCTCTGTG+CGG | 0.649554 | 3.2:+78484489 | MS.gene06564:CDS |
| AATGCCAAATAAAGGCAGGT+GGG | 0.655407 | 3.2:+78487437 | MS.gene06564:CDS |
| AAGGAACTCTATCAGCAGGT+AGG | 0.661361 | 3.2:-78487378 | None:intergenic |
| CATCAGGCATGGTATAGGAG+AGG | 0.668519 | 3.2:+78485452 | MS.gene06564:intron |
| AAGACAATATAACAATACAA+TGG | 0.671651 | 3.2:-78487876 | None:intergenic |
| GAACCTGGTGAAACATCAGA+TGG | 0.672386 | 3.2:-78486813 | None:intergenic |
| TCACACAATGAAAAGCATTG+AGG | 0.676894 | 3.2:-78489704 | None:intergenic |
| GGGAGAATTACAATTATCGG+CGG | 0.684311 | 3.2:+78491085 | MS.gene06564:CDS |
| AAGCTGTTCTCCTTCTGTCG+CGG | 0.691374 | 3.2:-78485629 | None:intergenic |
| AGTGTCGAATCATCAACAGG+AGG | 0.693713 | 3.2:+78485536 | MS.gene06564:CDS |
| GGACTGTCAGATCAGTCTGG+AGG | 0.695431 | 3.2:+78488248 | MS.gene06564:CDS |
| GGCATGGTATAGGAGAGGAA+AGG | 0.699336 | 3.2:+78485457 | MS.gene06564:intron |
| CCTGGTGAAACATCAGATGG+CGG | 0.706873 | 3.2:-78486810 | None:intergenic |
| TTATATCTCCTAGGTCAGAG+TGG | 0.711387 | 3.2:+78488500 | MS.gene06564:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 78484264 | 78492163 | 78484264 | ID=MS.gene06564 |
| chr3.2 | mRNA | 78484264 | 78492163 | 78484264 | ID=MS.gene06564.t1;Parent=MS.gene06564 |
| chr3.2 | exon | 78484264 | 78484392 | 78484264 | ID=MS.gene06564.t1.exon1;Parent=MS.gene06564.t1 |
| chr3.2 | CDS | 78484264 | 78484392 | 78484264 | ID=cds.MS.gene06564.t1;Parent=MS.gene06564.t1 |
| chr3.2 | exon | 78484471 | 78484605 | 78484471 | ID=MS.gene06564.t1.exon2;Parent=MS.gene06564.t1 |
| chr3.2 | CDS | 78484471 | 78484605 | 78484471 | ID=cds.MS.gene06564.t1;Parent=MS.gene06564.t1 |
| chr3.2 | exon | 78484707 | 78484793 | 78484707 | ID=MS.gene06564.t1.exon3;Parent=MS.gene06564.t1 |
| chr3.2 | CDS | 78484707 | 78484793 | 78484707 | ID=cds.MS.gene06564.t1;Parent=MS.gene06564.t1 |
| chr3.2 | exon | 78484923 | 78484994 | 78484923 | ID=MS.gene06564.t1.exon4;Parent=MS.gene06564.t1 |
| chr3.2 | CDS | 78484923 | 78484994 | 78484923 | ID=cds.MS.gene06564.t1;Parent=MS.gene06564.t1 |
| chr3.2 | exon | 78485458 | 78485662 | 78485458 | ID=MS.gene06564.t1.exon5;Parent=MS.gene06564.t1 |
| chr3.2 | CDS | 78485458 | 78485662 | 78485458 | ID=cds.MS.gene06564.t1;Parent=MS.gene06564.t1 |
| chr3.2 | exon | 78486748 | 78486866 | 78486748 | ID=MS.gene06564.t1.exon6;Parent=MS.gene06564.t1 |
| chr3.2 | CDS | 78486748 | 78486866 | 78486748 | ID=cds.MS.gene06564.t1;Parent=MS.gene06564.t1 |
| chr3.2 | exon | 78487328 | 78487717 | 78487328 | ID=MS.gene06564.t1.exon7;Parent=MS.gene06564.t1 |
| chr3.2 | CDS | 78487328 | 78487717 | 78487328 | ID=cds.MS.gene06564.t1;Parent=MS.gene06564.t1 |
| chr3.2 | exon | 78487815 | 78487949 | 78487815 | ID=MS.gene06564.t1.exon8;Parent=MS.gene06564.t1 |
| chr3.2 | CDS | 78487815 | 78487949 | 78487815 | ID=cds.MS.gene06564.t1;Parent=MS.gene06564.t1 |
| chr3.2 | exon | 78488176 | 78488316 | 78488176 | ID=MS.gene06564.t1.exon9;Parent=MS.gene06564.t1 |
| chr3.2 | CDS | 78488176 | 78488316 | 78488176 | ID=cds.MS.gene06564.t1;Parent=MS.gene06564.t1 |
| chr3.2 | exon | 78488513 | 78488668 | 78488513 | ID=MS.gene06564.t1.exon10;Parent=MS.gene06564.t1 |
| chr3.2 | CDS | 78488513 | 78488668 | 78488513 | ID=cds.MS.gene06564.t1;Parent=MS.gene06564.t1 |
| chr3.2 | exon | 78489600 | 78489812 | 78489600 | ID=MS.gene06564.t1.exon11;Parent=MS.gene06564.t1 |
| chr3.2 | CDS | 78489600 | 78489812 | 78489600 | ID=cds.MS.gene06564.t1;Parent=MS.gene06564.t1 |
| chr3.2 | exon | 78490006 | 78490163 | 78490006 | ID=MS.gene06564.t1.exon12;Parent=MS.gene06564.t1 |
| chr3.2 | CDS | 78490006 | 78490163 | 78490006 | ID=cds.MS.gene06564.t1;Parent=MS.gene06564.t1 |
| chr3.2 | exon | 78490363 | 78490477 | 78490363 | ID=MS.gene06564.t1.exon13;Parent=MS.gene06564.t1 |
| chr3.2 | CDS | 78490363 | 78490477 | 78490363 | ID=cds.MS.gene06564.t1;Parent=MS.gene06564.t1 |
| chr3.2 | exon | 78491050 | 78491130 | 78491050 | ID=MS.gene06564.t1.exon14;Parent=MS.gene06564.t1 |
| chr3.2 | CDS | 78491050 | 78491130 | 78491050 | ID=cds.MS.gene06564.t1;Parent=MS.gene06564.t1 |
| chr3.2 | exon | 78491966 | 78492163 | 78491966 | ID=MS.gene06564.t1.exon15;Parent=MS.gene06564.t1 |
| chr3.2 | CDS | 78491966 | 78492163 | 78491966 | ID=cds.MS.gene06564.t1;Parent=MS.gene06564.t1 |
| Gene Sequence |
| Protein sequence |
