Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28438.t1 | XP_004512510.2 | 100 | 136 | 0 | 0 | 1 | 136 | 104 | 239 | 5.80E-64 | 253.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28438.t1 | P68429 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.4e-66 | 253.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28438.t1 | A0A1S3TJX1 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.2e-64 | 253.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049989 | MS.gene28438 | 0.809878 | 1.52E-50 | -1.69E-46 |
MS.gene050297 | MS.gene28438 | 0.800877 | 1.17E-48 | -1.69E-46 |
MS.gene051263 | MS.gene28438 | 0.838962 | 2.11E-57 | -1.69E-46 |
MS.gene055957 | MS.gene28438 | 0.849958 | 2.32E-60 | -1.69E-46 |
MS.gene056042 | MS.gene28438 | 0.812706 | 3.70E-51 | -1.69E-46 |
MS.gene056169 | MS.gene28438 | 0.810386 | 1.18E-50 | -1.69E-46 |
MS.gene056335 | MS.gene28438 | 0.818429 | 1.97E-52 | -1.69E-46 |
MS.gene058196 | MS.gene28438 | 0.807971 | 3.89E-50 | -1.69E-46 |
MS.gene058197 | MS.gene28438 | 0.831839 | 1.33E-55 | -1.69E-46 |
MS.gene058198 | MS.gene28438 | 0.834431 | 3.01E-56 | -1.69E-46 |
MS.gene059300 | MS.gene28438 | 0.839198 | 1.83E-57 | -1.69E-46 |
MS.gene06057 | MS.gene28438 | 0.808209 | 3.47E-50 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28438.t1 | MTR_7g059070 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28438.t1 | MTR_5g029820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28438.t1 | MTR_5g029770 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28438.t1 | MTR_4g065990 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28438.t1 | MTR_4g088150 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28438.t1 | MTR_2g035230 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28438.t1 | MTR_8g092720 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28438.t1 | MTR_8g063500 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28438.t1 | MTR_8g103245 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28438.t1 | MTR_8g092820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28438.t1 | MTR_7g013610 | 100.000 | 136 | 0 | 0 | 1 | 136 | 100 | 235 | 1.10e-95 | 275 |
MS.gene28438.t1 | MTR_4g097175 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene28438.t1 | MTR_1g023630 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene28438.t1 | MTR_8g061940 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene28438.t1 | MTR_8g099430 | 96.324 | 136 | 5 | 0 | 1 | 136 | 1 | 136 | 1.38e-92 | 264 |
MS.gene28438.t1 | MTR_4g097170 | 96.324 | 136 | 5 | 0 | 1 | 136 | 42 | 177 | 2.29e-91 | 262 |
MS.gene28438.t1 | MTR_2g082310 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene28438.t1 | MTR_2g082340 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene28438.t1 | MTR_2g082370 | 85.616 | 146 | 11 | 1 | 1 | 136 | 1 | 146 | 1.74e-82 | 238 |
MS.gene28438.t1 | MTR_2g082400 | 84.559 | 136 | 19 | 2 | 1 | 135 | 1 | 135 | 6.38e-75 | 219 |
MS.gene28438.t1 | MTR_7g013600 | 86.607 | 112 | 15 | 0 | 25 | 136 | 2 | 113 | 1.01e-65 | 195 |
MS.gene28438.t1 | MTR_7g023830 | 67.164 | 134 | 43 | 1 | 1 | 134 | 1 | 133 | 6.48e-56 | 171 |
MS.gene28438.t1 | MTR_1g023630 | 73.504 | 117 | 15 | 3 | 1 | 111 | 1 | 107 | 3.81e-52 | 160 |
MS.gene28438.t1 | MTR_5g024630 | 67.241 | 116 | 35 | 2 | 1 | 116 | 1 | 113 | 1.63e-45 | 144 |
MS.gene28438.t1 | MTR_7g023880 | 58.647 | 133 | 41 | 3 | 3 | 134 | 18 | 137 | 5.46e-43 | 139 |
MS.gene28438.t1 | MTR_5g024530 | 68.182 | 110 | 12 | 2 | 19 | 128 | 68 | 154 | 4.56e-42 | 137 |
MS.gene28438.t1 | MTR_0197s0100 | 100.000 | 66 | 0 | 0 | 1 | 66 | 1 | 66 | 1.45e-40 | 132 |
MS.gene28438.t1 | MTR_8g027840 | 55.102 | 98 | 43 | 1 | 37 | 133 | 28 | 125 | 4.83e-30 | 105 |
MS.gene28438.t1 | MTR_8g105150 | 53.846 | 91 | 10 | 1 | 37 | 127 | 11 | 69 | 1.43e-25 | 92.4 |
MS.gene28438.t1 | MTR_8g092740 | 97.368 | 38 | 1 | 0 | 99 | 136 | 118 | 155 | 4.60e-20 | 80.9 |
MS.gene28438.t1 | MTR_5g089120 | 76.190 | 42 | 10 | 0 | 82 | 123 | 6 | 47 | 6.07e-18 | 73.6 |
MS.gene28438.t1 | MTR_5g024600 | 62.963 | 54 | 20 | 0 | 1 | 54 | 1 | 54 | 1.76e-15 | 66.2 |
MS.gene28438.t1 | MTR_4g128040 | 75.676 | 37 | 9 | 0 | 79 | 115 | 20 | 56 | 3.38e-15 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28438.t1 | AT5G65360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene28438.t1 | AT5G10390 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene28438.t1 | AT5G10400 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene28438.t1 | AT3G27360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene28438.t1 | AT1G09200 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene28438.t1 | AT5G10980 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene28438.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene28438.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene28438.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene28438.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene28438.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene28438.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene28438.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 29 | 164 | 6.76e-93 | 266 |
MS.gene28438.t1 | AT5G65350 | 94.853 | 136 | 7 | 0 | 1 | 136 | 1 | 136 | 5.09e-91 | 260 |
MS.gene28438.t1 | AT1G75600 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 1.20e-89 | 256 |
MS.gene28438.t1 | AT1G13370 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 5.32e-89 | 254 |
MS.gene28438.t1 | AT1G19890 | 89.781 | 137 | 13 | 1 | 1 | 136 | 1 | 137 | 1.03e-83 | 241 |
MS.gene28438.t1 | AT5G12910 | 71.111 | 135 | 34 | 2 | 1 | 135 | 1 | 130 | 9.51e-67 | 198 |
MS.gene28438.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene28438.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene28438.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene28438.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
Find 36 sgRNAs with CRISPR-Local
Find 36 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTGGTGGCGAGCTGCTTCC+GGG | 0.243048 | 4.4:-8668565 | None:intergenic |
CCTTGGTGGCGAGCTGCTTC+CGG | 0.245379 | 4.4:-8668566 | None:intergenic |
TCTCTCAAAGCAACTGTTCC+AGG | 0.333816 | 4.4:-8668645 | None:intergenic |
CAGTGCTGTATCTGCTCTTC+AGG | 0.340320 | 4.4:+8668776 | MS.gene28438:CDS |
AGCTGATTTCCGAGCGGCCT+TGG | 0.357073 | 4.4:-8668583 | None:intergenic |
GGAAGCTGCTGAGGCTTACT+TGG | 0.361475 | 4.4:+8668797 | MS.gene28438:CDS |
TTCTTCACTCCTCCGGTCGC+CGG | 0.442119 | 4.4:-8668606 | None:intergenic |
GCTGCTGAGGCTTACTTGGT+TGG | 0.450601 | 4.4:+8668801 | MS.gene28438:CDS |
GACGTTGGAATGGAAGTTTA+CGG | 0.458530 | 4.4:-8668704 | None:intergenic |
CGGAAATCAGCTCCGGCGAC+CGG | 0.461897 | 4.4:+8668594 | MS.gene28438:CDS |
CTTGCAAGCTGAATGTCCTT+AGG | 0.462646 | 4.4:-8668879 | None:intergenic |
CCACCGGCGGCAAGGCTCCC+CGG | 0.480154 | 4.4:+8668547 | MS.gene28438:CDS |
TGATTTCCGAGCGGCCTTGG+TGG | 0.486781 | 4.4:-8668580 | None:intergenic |
TCGCAAGTCCACCGGCGGCA+AGG | 0.488583 | 4.4:+8668539 | MS.gene28438:CDS |
AGCTCGCCACCAAGGCCGCT+CGG | 0.489496 | 4.4:+8668574 | MS.gene28438:CDS |
GGCCGCTCGGAAATCAGCTC+CGG | 0.498921 | 4.4:+8668587 | MS.gene28438:CDS |
GTGTGGCTTCTTCACTCCTC+CGG | 0.499925 | 4.4:-8668613 | None:intergenic |
CTTCCGGGGAGCCTTGCCGC+CGG | 0.507682 | 4.4:-8668550 | None:intergenic |
TGCTCTTCAGGAAGCTGCTG+AGG | 0.517538 | 4.4:+8668788 | MS.gene28438:CDS |
CCGGGGAGCCTTGCCGCCGG+TGG | 0.548377 | 4.4:-8668547 | None:intergenic |
GGACTTGCGAGCAGTCTGCT+TGG | 0.551577 | 4.4:-8668526 | None:intergenic |
CAGACTGCTCGCAAGTCCAC+CGG | 0.562052 | 4.4:+8668531 | MS.gene28438:CDS |
GAGAGTTACAATCATGCCTA+AGG | 0.570792 | 4.4:+8668863 | MS.gene28438:CDS |
TTGGTGGCGAGCTGCTTCCG+GGG | 0.572322 | 4.4:-8668564 | None:intergenic |
AAGAAGAATCAGAGGAGAGA+GGG | 0.573886 | 4.4:+8668899 | MS.gene28438:CDS |
TCACGAACAAGACGTTGGAA+TGG | 0.591294 | 4.4:-8668714 | None:intergenic |
AAATCAGCTCCGGCGACCGG+AGG | 0.599225 | 4.4:+8668597 | MS.gene28438:CDS |
CAAGAAGAATCAGAGGAGAG+AGG | 0.603703 | 4.4:+8668898 | MS.gene28438:CDS |
CAATTTCACGAACAAGACGT+TGG | 0.614742 | 4.4:-8668719 | None:intergenic |
CAGCTTGCAAGAAGAATCAG+AGG | 0.621034 | 4.4:+8668891 | MS.gene28438:CDS |
AAGATTTCAAGACAGATCTG+AGG | 0.632208 | 4.4:+8668745 | MS.gene28438:CDS |
CCGGAAGCAGCTCGCCACCA+AGG | 0.635253 | 4.4:+8668566 | MS.gene28438:CDS |
ACTGCTCGCAAGTCCACCGG+CGG | 0.647164 | 4.4:+8668534 | MS.gene28438:CDS |
AAGCCACACAGATTCAGACC+TGG | 0.672238 | 4.4:+8668627 | MS.gene28438:CDS |
GTTCCAGGTCTGAATCTGTG+TGG | 0.688220 | 4.4:-8668630 | None:intergenic |
CGCCGGAGCTGATTTCCGAG+CGG | 0.728257 | 4.4:-8668589 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
AAGATTTCAAGACAGATCTG+AGG | + | chr4.4:8668745-8668764 | MS.gene28438:CDS | 35.0% | |
AAGAAGAATCAGAGGAGAGA+GGG | + | chr4.4:8668899-8668918 | MS.gene28438:CDS | 40.0% | |
CAATTTCACGAACAAGACGT+TGG | - | chr4.4:8668722-8668741 | None:intergenic | 40.0% | |
GACGTTGGAATGGAAGTTTA+CGG | - | chr4.4:8668707-8668726 | None:intergenic | 40.0% | |
GAGAGTTACAATCATGCCTA+AGG | + | chr4.4:8668863-8668882 | MS.gene28438:CDS | 40.0% | |
CAAGAAGAATCAGAGGAGAG+AGG | + | chr4.4:8668898-8668917 | MS.gene28438:CDS | 45.0% | |
CAGCTTGCAAGAAGAATCAG+AGG | + | chr4.4:8668891-8668910 | MS.gene28438:CDS | 45.0% | |
CTTGCAAGCTGAATGTCCTT+AGG | - | chr4.4:8668882-8668901 | None:intergenic | 45.0% | |
TCACGAACAAGACGTTGGAA+TGG | - | chr4.4:8668717-8668736 | None:intergenic | 45.0% | |
TCTCTCAAAGCAACTGTTCC+AGG | - | chr4.4:8668648-8668667 | None:intergenic | 45.0% | |
AAGCCACACAGATTCAGACC+TGG | + | chr4.4:8668627-8668646 | MS.gene28438:CDS | 50.0% | |
CAGTGCTGTATCTGCTCTTC+AGG | + | chr4.4:8668776-8668795 | MS.gene28438:CDS | 50.0% | |
GTTCCAGGTCTGAATCTGTG+TGG | - | chr4.4:8668633-8668652 | None:intergenic | 50.0% | |
GCTGCTGAGGCTTACTTGGT+TGG | + | chr4.4:8668801-8668820 | MS.gene28438:CDS | 55.0% | |
GGAAGCTGCTGAGGCTTACT+TGG | + | chr4.4:8668797-8668816 | MS.gene28438:CDS | 55.0% | |
GTGTGGCTTCTTCACTCCTC+CGG | - | chr4.4:8668616-8668635 | None:intergenic | 55.0% | |
TGCTCTTCAGGAAGCTGCTG+AGG | + | chr4.4:8668788-8668807 | MS.gene28438:CDS | 55.0% | |
CAGACTGCTCGCAAGTCCAC+CGG | + | chr4.4:8668531-8668550 | MS.gene28438:CDS | 60.0% | |
GGACTTGCGAGCAGTCTGCT+TGG | - | chr4.4:8668529-8668548 | None:intergenic | 60.0% | |
TGATTTCCGAGCGGCCTTGG+TGG | - | chr4.4:8668583-8668602 | None:intergenic | 60.0% | |
TTCTTCACTCCTCCGGTCGC+CGG | - | chr4.4:8668609-8668628 | None:intergenic | 60.0% | |
! | AGCTGATTTCCGAGCGGCCT+TGG | - | chr4.4:8668586-8668605 | None:intergenic | 60.0% |
AAATCAGCTCCGGCGACCGG+AGG | + | chr4.4:8668597-8668616 | MS.gene28438:CDS | 65.0% | |
ACTGCTCGCAAGTCCACCGG+CGG | + | chr4.4:8668534-8668553 | MS.gene28438:CDS | 65.0% | |
CGGAAATCAGCTCCGGCGAC+CGG | + | chr4.4:8668594-8668613 | MS.gene28438:CDS | 65.0% | |
GGCCGCTCGGAAATCAGCTC+CGG | + | chr4.4:8668587-8668606 | MS.gene28438:CDS | 65.0% | |
! | CGCCGGAGCTGATTTCCGAG+CGG | - | chr4.4:8668592-8668611 | None:intergenic | 65.0% |
!! | CCTTGGTGGCGAGCTGCTTC+CGG | - | chr4.4:8668569-8668588 | None:intergenic | 65.0% |
!! | CTTGGTGGCGAGCTGCTTCC+GGG | - | chr4.4:8668568-8668587 | None:intergenic | 65.0% |
!! | TTGGTGGCGAGCTGCTTCCG+GGG | - | chr4.4:8668567-8668586 | None:intergenic | 65.0% |
AGCTCGCCACCAAGGCCGCT+CGG | + | chr4.4:8668574-8668593 | MS.gene28438:CDS | 70.0% | |
CCGGAAGCAGCTCGCCACCA+AGG | + | chr4.4:8668566-8668585 | MS.gene28438:CDS | 70.0% | |
TCGCAAGTCCACCGGCGGCA+AGG | + | chr4.4:8668539-8668558 | MS.gene28438:CDS | 70.0% | |
CTTCCGGGGAGCCTTGCCGC+CGG | - | chr4.4:8668553-8668572 | None:intergenic | 75.0% | |
! | CCACCGGCGGCAAGGCTCCC+CGG | + | chr4.4:8668547-8668566 | MS.gene28438:CDS | 80.0% |
! | CCGGGGAGCCTTGCCGCCGG+TGG | - | chr4.4:8668550-8668569 | None:intergenic | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 8668516 | 8668926 | 8668516 | ID=MS.gene28438 |
chr4.4 | mRNA | 8668516 | 8668926 | 8668516 | ID=MS.gene28438.t1;Parent=MS.gene28438 |
chr4.4 | exon | 8668516 | 8668926 | 8668516 | ID=MS.gene28438.t1.exon1;Parent=MS.gene28438.t1 |
chr4.4 | CDS | 8668516 | 8668926 | 8668516 | ID=cds.MS.gene28438.t1;Parent=MS.gene28438.t1 |
Gene Sequence |
Protein sequence |