Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068178.t1 | XP_004512510.2 | 100 | 136 | 0 | 0 | 1 | 136 | 104 | 239 | 5.80E-64 | 253.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068178.t1 | P68429 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.4e-66 | 253.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068178.t1 | A0A1S3TJX1 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.2e-64 | 253.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068178.t1 | MTR_7g059070 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene068178.t1 | MTR_5g029820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene068178.t1 | MTR_5g029770 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene068178.t1 | MTR_4g065990 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene068178.t1 | MTR_4g088150 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene068178.t1 | MTR_2g035230 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene068178.t1 | MTR_8g092720 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene068178.t1 | MTR_8g063500 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene068178.t1 | MTR_8g103245 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene068178.t1 | MTR_8g092820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene068178.t1 | MTR_7g013610 | 100.000 | 136 | 0 | 0 | 1 | 136 | 100 | 235 | 1.10e-95 | 275 |
MS.gene068178.t1 | MTR_4g097175 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene068178.t1 | MTR_1g023630 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene068178.t1 | MTR_8g061940 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene068178.t1 | MTR_8g099430 | 96.324 | 136 | 5 | 0 | 1 | 136 | 1 | 136 | 1.38e-92 | 264 |
MS.gene068178.t1 | MTR_4g097170 | 96.324 | 136 | 5 | 0 | 1 | 136 | 42 | 177 | 2.29e-91 | 262 |
MS.gene068178.t1 | MTR_2g082310 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene068178.t1 | MTR_2g082340 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene068178.t1 | MTR_2g082370 | 85.616 | 146 | 11 | 1 | 1 | 136 | 1 | 146 | 1.74e-82 | 238 |
MS.gene068178.t1 | MTR_2g082400 | 84.559 | 136 | 19 | 2 | 1 | 135 | 1 | 135 | 6.38e-75 | 219 |
MS.gene068178.t1 | MTR_7g013600 | 86.607 | 112 | 15 | 0 | 25 | 136 | 2 | 113 | 1.01e-65 | 195 |
MS.gene068178.t1 | MTR_7g023830 | 67.164 | 134 | 43 | 1 | 1 | 134 | 1 | 133 | 6.48e-56 | 171 |
MS.gene068178.t1 | MTR_1g023630 | 73.504 | 117 | 15 | 3 | 1 | 111 | 1 | 107 | 3.81e-52 | 160 |
MS.gene068178.t1 | MTR_5g024630 | 67.241 | 116 | 35 | 2 | 1 | 116 | 1 | 113 | 1.63e-45 | 144 |
MS.gene068178.t1 | MTR_7g023880 | 58.647 | 133 | 41 | 3 | 3 | 134 | 18 | 137 | 5.46e-43 | 139 |
MS.gene068178.t1 | MTR_5g024530 | 68.182 | 110 | 12 | 2 | 19 | 128 | 68 | 154 | 4.56e-42 | 137 |
MS.gene068178.t1 | MTR_0197s0100 | 100.000 | 66 | 0 | 0 | 1 | 66 | 1 | 66 | 1.45e-40 | 132 |
MS.gene068178.t1 | MTR_8g027840 | 55.102 | 98 | 43 | 1 | 37 | 133 | 28 | 125 | 4.83e-30 | 105 |
MS.gene068178.t1 | MTR_8g105150 | 53.846 | 91 | 10 | 1 | 37 | 127 | 11 | 69 | 1.43e-25 | 92.4 |
MS.gene068178.t1 | MTR_8g092740 | 97.368 | 38 | 1 | 0 | 99 | 136 | 118 | 155 | 4.60e-20 | 80.9 |
MS.gene068178.t1 | MTR_5g089120 | 76.190 | 42 | 10 | 0 | 82 | 123 | 6 | 47 | 6.07e-18 | 73.6 |
MS.gene068178.t1 | MTR_5g024600 | 62.963 | 54 | 20 | 0 | 1 | 54 | 1 | 54 | 1.76e-15 | 66.2 |
MS.gene068178.t1 | MTR_4g128040 | 75.676 | 37 | 9 | 0 | 79 | 115 | 20 | 56 | 3.38e-15 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene068178.t1 | AT5G65360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene068178.t1 | AT5G10390 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene068178.t1 | AT5G10400 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene068178.t1 | AT3G27360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene068178.t1 | AT1G09200 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene068178.t1 | AT5G10980 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene068178.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene068178.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene068178.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene068178.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene068178.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene068178.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene068178.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 29 | 164 | 6.76e-93 | 266 |
MS.gene068178.t1 | AT5G65350 | 94.853 | 136 | 7 | 0 | 1 | 136 | 1 | 136 | 5.09e-91 | 260 |
MS.gene068178.t1 | AT1G75600 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 1.20e-89 | 256 |
MS.gene068178.t1 | AT1G13370 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 5.32e-89 | 254 |
MS.gene068178.t1 | AT1G19890 | 89.781 | 137 | 13 | 1 | 1 | 136 | 1 | 137 | 1.03e-83 | 241 |
MS.gene068178.t1 | AT5G12910 | 71.111 | 135 | 34 | 2 | 1 | 135 | 1 | 130 | 9.51e-67 | 198 |
MS.gene068178.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene068178.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene068178.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene068178.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
Find 36 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAGAAGCTCAGTGCTCTTC+TGG | 0.304985 | 2.3:+55657924 | None:intergenic |
TCACGAAGTGCGACGGTTCC+TGG | 0.318785 | 2.3:+55657959 | None:intergenic |
GCTGCTGAAGCTTATCTTGT+TGG | 0.357332 | 2.3:-55657803 | MS.gene068178:CDS |
GAAGCTTCCATTTCAAAGAT+TGG | 0.365481 | 2.3:-55657897 | MS.gene068178:CDS |
TCTCGAACCAATCTTTGAAA+TGG | 0.396886 | 2.3:+55657890 | None:intergenic |
CGGAAATCCGCTCCGGCGAC+CGG | 0.429737 | 2.3:-55658010 | MS.gene068178:CDS |
TTCTTCACTCCTCCGGTCGC+CGG | 0.442119 | 2.3:+55657998 | None:intergenic |
CTCGCAAGTTGAATATCCTT+AGG | 0.495447 | 2.3:+55657725 | None:intergenic |
GAGCAGAAACAGCACTACTC+TGG | 0.498444 | 2.3:+55657834 | None:intergenic |
AAGCCCCACCGTTTCCGTCC+AGG | 0.502650 | 2.3:-55657977 | MS.gene068178:CDS |
CGACGGTTCCTGGACGGAAA+CGG | 0.511490 | 2.3:+55657969 | None:intergenic |
TTGTGCTATTCATGCTAAGA+GGG | 0.513784 | 2.3:-55657759 | MS.gene068178:CDS |
GGTTCCTGGACGGAAACGGT+GGG | 0.514668 | 2.3:+55657973 | None:intergenic |
CACTCCTCCGGTCGCCGGAG+CGG | 0.515017 | 2.3:+55658003 | None:intergenic |
GTGGGGCTTCTTCACTCCTC+CGG | 0.515291 | 2.3:+55657991 | None:intergenic |
AGCCGCTCGGAAATCCGCTC+CGG | 0.515753 | 2.3:-55658017 | MS.gene068178:CDS |
AGAGCACTGAGCTTCTCATA+AGG | 0.531497 | 2.3:-55657919 | MS.gene068178:CDS |
CGGTTCCTGGACGGAAACGG+TGG | 0.532129 | 2.3:+55657972 | None:intergenic |
AAACAGCACTACTCTGGAAA+CGG | 0.532210 | 2.3:+55657840 | None:intergenic |
GAGGGTTACTATTATGCCTA+AGG | 0.533362 | 2.3:-55657741 | MS.gene068178:CDS |
TTTGTGCTATTCATGCTAAG+AGG | 0.537531 | 2.3:-55657760 | MS.gene068178:CDS |
CAGTGCTCTTCTGGTACTTG+CGG | 0.559165 | 2.3:+55657933 | None:intergenic |
GAGAAGAATCAGAGGCGAAA+GGG | 0.568256 | 2.3:-55657705 | MS.gene068178:CDS |
CGAGAAGAATCAGAGGCGAA+AGG | 0.575054 | 2.3:-55657706 | MS.gene068178:CDS |
AATCGCTCAGGATTTCAAAA+CGG | 0.576806 | 2.3:-55657867 | MS.gene068178:CDS |
CAAACCGCCCGAAAATCCAC+CGG | 0.581692 | 2.3:-55658073 | MS.gene068178:CDS |
GCGGATTTCACGAAGTGCGA+CGG | 0.598942 | 2.3:+55657952 | None:intergenic |
GTTCCTGGACGGAAACGGTG+GGG | 0.599384 | 2.3:+55657974 | None:intergenic |
AACTCGCCACAAAAGCCGCT+CGG | 0.605384 | 2.3:-55658030 | MS.gene068178:CDS |
AAATCCGCTCCGGCGACCGG+AGG | 0.609902 | 2.3:-55658007 | MS.gene068178:CDS |
ATTGGTTCGAGAAATCGCTC+AGG | 0.615789 | 2.3:-55657879 | MS.gene068178:CDS |
ACCGCCCGAAAATCCACCGG+CGG | 0.621620 | 2.3:-55658070 | MS.gene068178:CDS |
GAAGTGCGACGGTTCCTGGA+CGG | 0.655834 | 2.3:+55657963 | None:intergenic |
CAACTTGCGAGAAGAATCAG+AGG | 0.665987 | 2.3:-55657713 | MS.gene068178:CDS |
CGCCGGAGCGGATTTCCGAG+CGG | 0.670325 | 2.3:+55658015 | None:intergenic |
TTTGTGGCGAGTTGTTTGCG+TGG | 0.711662 | 2.3:+55658040 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
AATCGCTCAGGATTTCAAAA+CGG | - | chr2.3:55657921-55657940 | MS.gene068178:CDS | 35.0% | |
GAAGCTTCCATTTCAAAGAT+TGG | - | chr2.3:55657891-55657910 | MS.gene068178:CDS | 35.0% | |
! | TCTCGAACCAATCTTTGAAA+TGG | + | chr2.3:55657901-55657920 | None:intergenic | 35.0% |
! | TTGTGCTATTCATGCTAAGA+GGG | - | chr2.3:55658029-55658048 | MS.gene068178:CDS | 35.0% |
! | TTTGTGCTATTCATGCTAAG+AGG | - | chr2.3:55658028-55658047 | MS.gene068178:CDS | 35.0% |
GAGGGTTACTATTATGCCTA+AGG | - | chr2.3:55658047-55658066 | MS.gene068178:CDS | 40.0% | |
! | AAACAGCACTACTCTGGAAA+CGG | + | chr2.3:55657951-55657970 | None:intergenic | 40.0% |
! | CTCGCAAGTTGAATATCCTT+AGG | + | chr2.3:55658066-55658085 | None:intergenic | 40.0% |
CAACTTGCGAGAAGAATCAG+AGG | - | chr2.3:55658075-55658094 | MS.gene068178:CDS | 45.0% | |
GAGAAGAATCAGAGGCGAAA+GGG | - | chr2.3:55658083-55658102 | MS.gene068178:CDS | 45.0% | |
GCTGCTGAAGCTTATCTTGT+TGG | - | chr2.3:55657985-55658004 | MS.gene068178:CDS | 45.0% | |
!! | AGAGCACTGAGCTTCTCATA+AGG | - | chr2.3:55657869-55657888 | MS.gene068178:CDS | 45.0% |
!! | ATTGGTTCGAGAAATCGCTC+AGG | - | chr2.3:55657909-55657928 | MS.gene068178:CDS | 45.0% |
CAGTGCTCTTCTGGTACTTG+CGG | + | chr2.3:55657858-55657877 | None:intergenic | 50.0% | |
CGAGAAGAATCAGAGGCGAA+AGG | - | chr2.3:55658082-55658101 | MS.gene068178:CDS | 50.0% | |
GAGCAGAAACAGCACTACTC+TGG | + | chr2.3:55657957-55657976 | None:intergenic | 50.0% | |
TGAGAAGCTCAGTGCTCTTC+TGG | + | chr2.3:55657867-55657886 | None:intergenic | 50.0% | |
TTTGTGGCGAGTTGTTTGCG+TGG | + | chr2.3:55657751-55657770 | None:intergenic | 50.0% | |
!! | CTTTTCCGCCGGTGGATTTT+CGG | + | chr2.3:55657726-55657745 | None:intergenic | 50.0% |
!! | GGATTTTCGGGCGGTTTGTT+TGG | + | chr2.3:55657713-55657732 | None:intergenic | 50.0% |
!! | TTTTCCGCCGGTGGATTTTC+GGG | + | chr2.3:55657725-55657744 | None:intergenic | 50.0% |
AACTCGCCACAAAAGCCGCT+CGG | - | chr2.3:55657758-55657777 | MS.gene068178:CDS | 55.0% | |
CAAACCGCCCGAAAATCCAC+CGG | - | chr2.3:55657715-55657734 | MS.gene068178:CDS | 55.0% | |
GCGGATTTCACGAAGTGCGA+CGG | + | chr2.3:55657839-55657858 | None:intergenic | 55.0% | |
! | GGATTTCCGAGCGGCTTTTG+TGG | + | chr2.3:55657767-55657786 | None:intergenic | 55.0% |
! | TTTGCGTGGTGCTTTTCCGC+CGG | + | chr2.3:55657737-55657756 | None:intergenic | 55.0% |
CGACGGTTCCTGGACGGAAA+CGG | + | chr2.3:55657822-55657841 | None:intergenic | 60.0% | |
GAAGTGCGACGGTTCCTGGA+CGG | + | chr2.3:55657828-55657847 | None:intergenic | 60.0% | |
GGTTCCTGGACGGAAACGGT+GGG | + | chr2.3:55657818-55657837 | None:intergenic | 60.0% | |
GTGGGGCTTCTTCACTCCTC+CGG | + | chr2.3:55657800-55657819 | None:intergenic | 60.0% | |
GTTCCTGGACGGAAACGGTG+GGG | + | chr2.3:55657817-55657836 | None:intergenic | 60.0% | |
TCACGAAGTGCGACGGTTCC+TGG | + | chr2.3:55657832-55657851 | None:intergenic | 60.0% | |
TTCTTCACTCCTCCGGTCGC+CGG | + | chr2.3:55657793-55657812 | None:intergenic | 60.0% | |
AAGCCCCACCGTTTCCGTCC+AGG | - | chr2.3:55657811-55657830 | MS.gene068178:CDS | 65.0% | |
ACCGCCCGAAAATCCACCGG+CGG | - | chr2.3:55657718-55657737 | MS.gene068178:CDS | 65.0% | |
AGCCGCTCGGAAATCCGCTC+CGG | - | chr2.3:55657771-55657790 | MS.gene068178:CDS | 65.0% | |
CGGTTCCTGGACGGAAACGG+TGG | + | chr2.3:55657819-55657838 | None:intergenic | 65.0% | |
!! | TCCGCCGGTGGATTTTCGGG+CGG | + | chr2.3:55657722-55657741 | None:intergenic | 65.0% |
AAATCCGCTCCGGCGACCGG+AGG | - | chr2.3:55657781-55657800 | MS.gene068178:CDS | 70.0% | |
CGGAAATCCGCTCCGGCGAC+CGG | - | chr2.3:55657778-55657797 | MS.gene068178:CDS | 70.0% | |
! | CGCCGGAGCGGATTTCCGAG+CGG | + | chr2.3:55657776-55657795 | None:intergenic | 70.0% |
! | GCGTGGTGCTTTTCCGCCGG+TGG | + | chr2.3:55657734-55657753 | None:intergenic | 70.0% |
CACTCCTCCGGTCGCCGGAG+CGG | + | chr2.3:55657788-55657807 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 55657700 | 55658110 | 55657700 | ID=MS.gene068178 |
chr2.3 | mRNA | 55657700 | 55658110 | 55657700 | ID=MS.gene068178.t1;Parent=MS.gene068178 |
chr2.3 | exon | 55657700 | 55658110 | 55657700 | ID=MS.gene068178.t1.exon1;Parent=MS.gene068178.t1 |
chr2.3 | CDS | 55657700 | 55658110 | 55657700 | ID=cds.MS.gene068178.t1;Parent=MS.gene068178.t1 |
Gene Sequence |
Protein sequence |