Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64164.t1 | XP_004512510.2 | 100 | 136 | 0 | 0 | 1 | 136 | 104 | 239 | 5.80E-64 | 253.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64164.t1 | P68429 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.4e-66 | 253.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64164.t1 | A0A1S3TJX1 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.2e-64 | 253.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052367 | MS.gene64164 | 0.800287 | 1.55E-48 | -1.69E-46 |
MS.gene055308 | MS.gene64164 | 0.80714 | 5.85E-50 | -1.69E-46 |
MS.gene055957 | MS.gene64164 | 0.817753 | 2.80E-52 | -1.69E-46 |
MS.gene056041 | MS.gene64164 | 0.812286 | 4.58E-51 | -1.69E-46 |
MS.gene05640 | MS.gene64164 | 0.863004 | 3.39E-64 | -1.69E-46 |
MS.gene057458 | MS.gene64164 | 0.819373 | 1.20E-52 | -1.69E-46 |
MS.gene059553 | MS.gene64164 | 0.821312 | 4.32E-53 | -1.69E-46 |
MS.gene06093 | MS.gene64164 | 0.841883 | 3.63E-58 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64164.t1 | MTR_7g059070 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene64164.t1 | MTR_5g029820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene64164.t1 | MTR_5g029770 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene64164.t1 | MTR_4g065990 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene64164.t1 | MTR_4g088150 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene64164.t1 | MTR_2g035230 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene64164.t1 | MTR_8g092720 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene64164.t1 | MTR_8g063500 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene64164.t1 | MTR_8g103245 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene64164.t1 | MTR_8g092820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene64164.t1 | MTR_7g013610 | 100.000 | 136 | 0 | 0 | 1 | 136 | 100 | 235 | 1.10e-95 | 275 |
MS.gene64164.t1 | MTR_4g097175 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene64164.t1 | MTR_1g023630 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene64164.t1 | MTR_8g061940 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene64164.t1 | MTR_8g099430 | 96.324 | 136 | 5 | 0 | 1 | 136 | 1 | 136 | 1.38e-92 | 264 |
MS.gene64164.t1 | MTR_4g097170 | 96.324 | 136 | 5 | 0 | 1 | 136 | 42 | 177 | 2.29e-91 | 262 |
MS.gene64164.t1 | MTR_2g082310 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene64164.t1 | MTR_2g082340 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene64164.t1 | MTR_2g082370 | 85.616 | 146 | 11 | 1 | 1 | 136 | 1 | 146 | 1.74e-82 | 238 |
MS.gene64164.t1 | MTR_2g082400 | 84.559 | 136 | 19 | 2 | 1 | 135 | 1 | 135 | 6.38e-75 | 219 |
MS.gene64164.t1 | MTR_7g013600 | 86.607 | 112 | 15 | 0 | 25 | 136 | 2 | 113 | 1.01e-65 | 195 |
MS.gene64164.t1 | MTR_7g023830 | 67.164 | 134 | 43 | 1 | 1 | 134 | 1 | 133 | 6.48e-56 | 171 |
MS.gene64164.t1 | MTR_1g023630 | 73.504 | 117 | 15 | 3 | 1 | 111 | 1 | 107 | 3.81e-52 | 160 |
MS.gene64164.t1 | MTR_5g024630 | 67.241 | 116 | 35 | 2 | 1 | 116 | 1 | 113 | 1.63e-45 | 144 |
MS.gene64164.t1 | MTR_7g023880 | 58.647 | 133 | 41 | 3 | 3 | 134 | 18 | 137 | 5.46e-43 | 139 |
MS.gene64164.t1 | MTR_5g024530 | 68.182 | 110 | 12 | 2 | 19 | 128 | 68 | 154 | 4.56e-42 | 137 |
MS.gene64164.t1 | MTR_0197s0100 | 100.000 | 66 | 0 | 0 | 1 | 66 | 1 | 66 | 1.45e-40 | 132 |
MS.gene64164.t1 | MTR_8g027840 | 55.102 | 98 | 43 | 1 | 37 | 133 | 28 | 125 | 4.83e-30 | 105 |
MS.gene64164.t1 | MTR_8g105150 | 53.846 | 91 | 10 | 1 | 37 | 127 | 11 | 69 | 1.43e-25 | 92.4 |
MS.gene64164.t1 | MTR_8g092740 | 97.368 | 38 | 1 | 0 | 99 | 136 | 118 | 155 | 4.60e-20 | 80.9 |
MS.gene64164.t1 | MTR_5g089120 | 76.190 | 42 | 10 | 0 | 82 | 123 | 6 | 47 | 6.07e-18 | 73.6 |
MS.gene64164.t1 | MTR_5g024600 | 62.963 | 54 | 20 | 0 | 1 | 54 | 1 | 54 | 1.76e-15 | 66.2 |
MS.gene64164.t1 | MTR_4g128040 | 75.676 | 37 | 9 | 0 | 79 | 115 | 20 | 56 | 3.38e-15 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene64164.t1 | AT5G65360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene64164.t1 | AT5G10390 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene64164.t1 | AT5G10400 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene64164.t1 | AT3G27360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene64164.t1 | AT1G09200 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene64164.t1 | AT5G10980 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene64164.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene64164.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene64164.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene64164.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene64164.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene64164.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene64164.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 29 | 164 | 6.76e-93 | 266 |
MS.gene64164.t1 | AT5G65350 | 94.853 | 136 | 7 | 0 | 1 | 136 | 1 | 136 | 5.09e-91 | 260 |
MS.gene64164.t1 | AT1G75600 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 1.20e-89 | 256 |
MS.gene64164.t1 | AT1G13370 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 5.32e-89 | 254 |
MS.gene64164.t1 | AT1G19890 | 89.781 | 137 | 13 | 1 | 1 | 136 | 1 | 137 | 1.03e-83 | 241 |
MS.gene64164.t1 | AT5G12910 | 71.111 | 135 | 34 | 2 | 1 | 135 | 1 | 130 | 9.51e-67 | 198 |
MS.gene64164.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene64164.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene64164.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene64164.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
Find 33 sgRNAs with CRISPR-Local
Find 34 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTTGACTCCACCCGTTGC+CGG | 0.305872 | 5.2:+18725422 | None:intergenic |
TGAGAAGCTCGGTGCTCTTC+TGG | 0.307615 | 5.2:+18725348 | None:intergenic |
AGCAGATTTGCGAGCAGCTT+TGG | 0.335283 | 5.2:+18725445 | None:intergenic |
CGCAAATCTGCTCCGGCAAC+GGG | 0.354795 | 5.2:-18725434 | MS.gene64164:CDS |
GCTGCTGAAGCTTATCTTGT+TGG | 0.357332 | 5.2:-18725227 | MS.gene64164:CDS |
TCACGAAGTGCAACAGTTCC+AGG | 0.377831 | 5.2:+18725383 | None:intergenic |
TCGCAAATCTGCTCCGGCAA+CGG | 0.410102 | 5.2:-18725435 | MS.gene64164:CDS |
TTGGTGGCTAGCTGCTTCCT+TGG | 0.412728 | 5.2:+18725464 | None:intergenic |
GAGCGGAAACAGCACTGCTT+TGG | 0.422995 | 5.2:+18725258 | None:intergenic |
TTATCTTGTTGGTTTGTTTG+AGG | 0.428809 | 5.2:-18725216 | MS.gene64164:CDS |
CGATTTCACGAACAAGTCTC+TGG | 0.432729 | 5.2:+18725309 | None:intergenic |
AAACAGCACTGCTTTGGAAT+CGG | 0.472990 | 5.2:+18725264 | None:intergenic |
CGAGCGAGTTGAATATCCTT+AGG | 0.499677 | 5.2:+18725149 | None:intergenic |
AGATTTGCGAGCAGCTTTGG+TGG | 0.517744 | 5.2:+18725448 | None:intergenic |
AGCTGCTCGCAAATCTGCTC+CGG | 0.521796 | 5.2:-18725441 | MS.gene64164:CDS |
AGAGCACCGAGCTTCTCATA+AGG | 0.522726 | 5.2:-18725343 | MS.gene64164:CDS |
GGATTTGCGAGCAGTTTGCT+TGG | 0.522741 | 5.2:+18725502 | None:intergenic |
AGTTTGCTTGGTACGAGCCA+TGG | 0.544971 | 5.2:+18725514 | None:intergenic |
GAGAGTTACTATCATGCCTA+AGG | 0.550012 | 5.2:-18725165 | MS.gene64164:CDS |
ACTTGTTCGTGAAATCGCTC+AGG | 0.551065 | 5.2:-18725303 | MS.gene64164:CDS |
CAACTCGCTCGCAGAATCAG+AGG | 0.556058 | 5.2:-18725137 | MS.gene64164:CDS |
CGGTGCTCTTCTGGTACTTG+CGG | 0.565845 | 5.2:+18725357 | None:intergenic |
CAAACTGCTCGCAAATCCAC+CGG | 0.571388 | 5.2:-18725497 | MS.gene64164:CDS |
TTCAGCAGCTTCTTGAAGAG+CGG | 0.576635 | 5.2:+18725241 | None:intergenic |
TCACGAACAAGTCTCTGGAA+TGG | 0.590006 | 5.2:+18725314 | None:intergenic |
AAGTTTCCTTATGAGAAGCT+CGG | 0.601334 | 5.2:+18725337 | None:intergenic |
AAATCTGCTCCGGCAACGGG+TGG | 0.604476 | 5.2:-18725431 | MS.gene64164:CDS |
AAGCCACACAGATTCCGTCC+TGG | 0.622196 | 5.2:-18725401 | MS.gene64164:CDS |
TCTTAGCATGAATAGCGCAA+AGG | 0.644849 | 5.2:+18725186 | None:intergenic |
CCACCGGCGGAAAAGCACCA+AGG | 0.683879 | 5.2:-18725481 | MS.gene64164:CDS |
ACTGCTCGCAAATCCACCGG+CGG | 0.685762 | 5.2:-18725494 | MS.gene64164:CDS |
GAAGTGCAACAGTTCCAGGA+CGG | 0.690156 | 5.2:+18725387 | None:intergenic |
GTTCCAGGACGGAATCTGTG+TGG | 0.699556 | 5.2:+18725398 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATCTTGTTGGTTTGTTTG+AGG | - | chr5.2:18725420-18725439 | MS.gene64164:CDS | 30.0% |
AAGTTTCCTTATGAGAAGCT+CGG | + | chr5.2:18725302-18725321 | None:intergenic | 35.0% | |
GAGAGTTACTATCATGCCTA+AGG | - | chr5.2:18725471-18725490 | MS.gene64164:CDS | 40.0% | |
TCTTAGCATGAATAGCGCAA+AGG | + | chr5.2:18725453-18725472 | None:intergenic | 40.0% | |
!! | AAACAGCACTGCTTTGGAAT+CGG | + | chr5.2:18725375-18725394 | None:intergenic | 40.0% |
ACTTGTTCGTGAAATCGCTC+AGG | - | chr5.2:18725333-18725352 | MS.gene64164:CDS | 45.0% | |
CGATTTCACGAACAAGTCTC+TGG | + | chr5.2:18725330-18725349 | None:intergenic | 45.0% | |
GCTGCTGAAGCTTATCTTGT+TGG | - | chr5.2:18725409-18725428 | MS.gene64164:CDS | 45.0% | |
TTCAGCAGCTTCTTGAAGAG+CGG | + | chr5.2:18725398-18725417 | None:intergenic | 45.0% | |
! | CGAGCGAGTTGAATATCCTT+AGG | + | chr5.2:18725490-18725509 | None:intergenic | 45.0% |
! | TCACGAACAAGTCTCTGGAA+TGG | + | chr5.2:18725325-18725344 | None:intergenic | 45.0% |
AGCAGATTTGCGAGCAGCTT+TGG | + | chr5.2:18725194-18725213 | None:intergenic | 50.0% | |
CAAACTGCTCGCAAATCCAC+CGG | - | chr5.2:18725139-18725158 | MS.gene64164:CDS | 50.0% | |
GAAGTGCAACAGTTCCAGGA+CGG | + | chr5.2:18725252-18725271 | None:intergenic | 50.0% | |
TCACGAAGTGCAACAGTTCC+AGG | + | chr5.2:18725256-18725275 | None:intergenic | 50.0% | |
! | AGATTTGCGAGCAGCTTTGG+TGG | + | chr5.2:18725191-18725210 | None:intergenic | 50.0% |
! | GGATTTGCGAGCAGTTTGCT+TGG | + | chr5.2:18725137-18725156 | None:intergenic | 50.0% |
!! | AGAGCACCGAGCTTCTCATA+AGG | - | chr5.2:18725293-18725312 | MS.gene64164:CDS | 50.0% |
AAGCCACACAGATTCCGTCC+TGG | - | chr5.2:18725235-18725254 | MS.gene64164:CDS | 55.0% | |
AGCTGCTCGCAAATCTGCTC+CGG | - | chr5.2:18725195-18725214 | MS.gene64164:CDS | 55.0% | |
CAACTCGCTCGCAGAATCAG+AGG | - | chr5.2:18725499-18725518 | MS.gene64164:CDS | 55.0% | |
CGGTGCTCTTCTGGTACTTG+CGG | + | chr5.2:18725282-18725301 | None:intergenic | 55.0% | |
GAGCGGAAACAGCACTGCTT+TGG | + | chr5.2:18725381-18725400 | None:intergenic | 55.0% | |
GTTCCAGGACGGAATCTGTG+TGG | + | chr5.2:18725241-18725260 | None:intergenic | 55.0% | |
TCGCAAATCTGCTCCGGCAA+CGG | - | chr5.2:18725201-18725220 | MS.gene64164:CDS | 55.0% | |
TTCTTGACTCCACCCGTTGC+CGG | + | chr5.2:18725217-18725236 | None:intergenic | 55.0% | |
! | TTGGTGGCTAGCTGCTTCCT+TGG | + | chr5.2:18725175-18725194 | None:intergenic | 55.0% |
!! | TGAGAAGCTCGGTGCTCTTC+TGG | + | chr5.2:18725291-18725310 | None:intergenic | 55.0% |
!!! | CTTCCTTGGTGCTTTTCCGC+CGG | + | chr5.2:18725161-18725180 | None:intergenic | 55.0% |
AAATCTGCTCCGGCAACGGG+TGG | - | chr5.2:18725205-18725224 | MS.gene64164:CDS | 60.0% | |
ACTGCTCGCAAATCCACCGG+CGG | - | chr5.2:18725142-18725161 | MS.gene64164:CDS | 60.0% | |
CGCAAATCTGCTCCGGCAAC+GGG | - | chr5.2:18725202-18725221 | MS.gene64164:CDS | 60.0% | |
!! | CCACCGGCGGAAAAGCACCA+AGG | - | chr5.2:18725155-18725174 | MS.gene64164:CDS | 65.0% |
!!! | CCTTGGTGCTTTTCCGCCGG+TGG | + | chr5.2:18725158-18725177 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 18725124 | 18725534 | 18725124 | ID=MS.gene64164 |
chr5.2 | mRNA | 18725124 | 18725534 | 18725124 | ID=MS.gene64164.t1;Parent=MS.gene64164 |
chr5.2 | exon | 18725124 | 18725534 | 18725124 | ID=MS.gene64164.t1.exon1;Parent=MS.gene64164.t1 |
chr5.2 | CDS | 18725124 | 18725534 | 18725124 | ID=cds.MS.gene64164.t1;Parent=MS.gene64164.t1 |
Gene Sequence |
Protein sequence |