Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97701.t1 | XP_004512510.2 | 100 | 136 | 0 | 0 | 1 | 136 | 104 | 239 | 5.80E-64 | 253.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97701.t1 | P68429 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.4e-66 | 253.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97701.t1 | A0A1S3TJX1 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.2e-64 | 253.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051816 | MS.gene97701 | 0.803985 | 2.68E-49 | -1.69E-46 |
MS.gene051914 | MS.gene97701 | 0.83787 | 4.03E-57 | -1.69E-46 |
MS.gene052308 | MS.gene97701 | 0.859722 | 3.40E-63 | -1.69E-46 |
MS.gene052367 | MS.gene97701 | 0.809854 | 1.54E-50 | -1.69E-46 |
MS.gene053173 | MS.gene97701 | 0.840273 | 9.60E-58 | -1.69E-46 |
MS.gene053348 | MS.gene97701 | 0.838034 | 3.65E-57 | -1.69E-46 |
MS.gene054551 | MS.gene97701 | 0.873456 | 1.45E-67 | -1.69E-46 |
MS.gene054552 | MS.gene97701 | 0.818852 | 1.58E-52 | -1.69E-46 |
MS.gene054593 | MS.gene97701 | 0.864195 | 1.45E-64 | -1.69E-46 |
MS.gene054885 | MS.gene97701 | 0.802402 | 5.71E-49 | -1.69E-46 |
MS.gene055308 | MS.gene97701 | 0.871173 | 8.36E-67 | -1.69E-46 |
MS.gene055578 | MS.gene97701 | 0.860857 | 1.54E-63 | -1.69E-46 |
MS.gene055957 | MS.gene97701 | 0.870737 | 1.16E-66 | -1.69E-46 |
MS.gene056041 | MS.gene97701 | 0.878729 | 2.22E-69 | -1.69E-46 |
MS.gene056042 | MS.gene97701 | 0.801177 | 1.02E-48 | -1.69E-46 |
MS.gene05640 | MS.gene97701 | 0.859425 | 4.17E-63 | -1.69E-46 |
MS.gene056528 | MS.gene97701 | 0.806537 | 7.84E-50 | -1.69E-46 |
MS.gene05652 | MS.gene97701 | 0.804977 | 1.67E-49 | -1.69E-46 |
MS.gene057458 | MS.gene97701 | 0.859755 | 3.32E-63 | -1.69E-46 |
MS.gene058013 | MS.gene97701 | 0.826235 | 3.03E-54 | -1.69E-46 |
MS.gene058128 | MS.gene97701 | 0.889695 | 1.92E-73 | -1.69E-46 |
MS.gene058853 | MS.gene97701 | 0.887768 | 1.07E-72 | -1.69E-46 |
MS.gene059553 | MS.gene97701 | 0.819187 | 1.32E-52 | -1.69E-46 |
MS.gene059616 | MS.gene97701 | 0.822887 | 1.86E-53 | -1.69E-46 |
MS.gene060473 | MS.gene97701 | 0.815802 | 7.67E-52 | -1.69E-46 |
MS.gene060565 | MS.gene97701 | 0.801278 | 9.71E-49 | -1.69E-46 |
MS.gene06093 | MS.gene97701 | 0.832238 | 1.06E-55 | -1.69E-46 |
MS.gene061099 | MS.gene97701 | 0.835685 | 1.45E-56 | -1.69E-46 |
MS.gene061260 | MS.gene97701 | 0.833697 | 4.60E-56 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97701.t1 | MTR_7g059070 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene97701.t1 | MTR_5g029820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene97701.t1 | MTR_5g029770 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene97701.t1 | MTR_4g065990 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene97701.t1 | MTR_4g088150 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene97701.t1 | MTR_2g035230 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene97701.t1 | MTR_8g092720 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene97701.t1 | MTR_8g063500 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene97701.t1 | MTR_8g103245 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene97701.t1 | MTR_8g092820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene97701.t1 | MTR_7g013610 | 100.000 | 136 | 0 | 0 | 1 | 136 | 100 | 235 | 1.10e-95 | 275 |
MS.gene97701.t1 | MTR_4g097175 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene97701.t1 | MTR_1g023630 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene97701.t1 | MTR_8g061940 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene97701.t1 | MTR_8g099430 | 96.324 | 136 | 5 | 0 | 1 | 136 | 1 | 136 | 1.38e-92 | 264 |
MS.gene97701.t1 | MTR_4g097170 | 96.324 | 136 | 5 | 0 | 1 | 136 | 42 | 177 | 2.29e-91 | 262 |
MS.gene97701.t1 | MTR_2g082310 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene97701.t1 | MTR_2g082340 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene97701.t1 | MTR_2g082370 | 85.616 | 146 | 11 | 1 | 1 | 136 | 1 | 146 | 1.74e-82 | 238 |
MS.gene97701.t1 | MTR_2g082400 | 84.559 | 136 | 19 | 2 | 1 | 135 | 1 | 135 | 6.38e-75 | 219 |
MS.gene97701.t1 | MTR_7g013600 | 86.607 | 112 | 15 | 0 | 25 | 136 | 2 | 113 | 1.01e-65 | 195 |
MS.gene97701.t1 | MTR_7g023830 | 67.164 | 134 | 43 | 1 | 1 | 134 | 1 | 133 | 6.48e-56 | 171 |
MS.gene97701.t1 | MTR_1g023630 | 73.504 | 117 | 15 | 3 | 1 | 111 | 1 | 107 | 3.81e-52 | 160 |
MS.gene97701.t1 | MTR_5g024630 | 67.241 | 116 | 35 | 2 | 1 | 116 | 1 | 113 | 1.63e-45 | 144 |
MS.gene97701.t1 | MTR_7g023880 | 58.647 | 133 | 41 | 3 | 3 | 134 | 18 | 137 | 5.46e-43 | 139 |
MS.gene97701.t1 | MTR_5g024530 | 68.182 | 110 | 12 | 2 | 19 | 128 | 68 | 154 | 4.56e-42 | 137 |
MS.gene97701.t1 | MTR_0197s0100 | 100.000 | 66 | 0 | 0 | 1 | 66 | 1 | 66 | 1.45e-40 | 132 |
MS.gene97701.t1 | MTR_8g027840 | 55.102 | 98 | 43 | 1 | 37 | 133 | 28 | 125 | 4.83e-30 | 105 |
MS.gene97701.t1 | MTR_8g105150 | 53.846 | 91 | 10 | 1 | 37 | 127 | 11 | 69 | 1.43e-25 | 92.4 |
MS.gene97701.t1 | MTR_8g092740 | 97.368 | 38 | 1 | 0 | 99 | 136 | 118 | 155 | 4.60e-20 | 80.9 |
MS.gene97701.t1 | MTR_5g089120 | 76.190 | 42 | 10 | 0 | 82 | 123 | 6 | 47 | 6.07e-18 | 73.6 |
MS.gene97701.t1 | MTR_5g024600 | 62.963 | 54 | 20 | 0 | 1 | 54 | 1 | 54 | 1.76e-15 | 66.2 |
MS.gene97701.t1 | MTR_4g128040 | 75.676 | 37 | 9 | 0 | 79 | 115 | 20 | 56 | 3.38e-15 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene97701.t1 | AT5G65360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene97701.t1 | AT5G10390 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene97701.t1 | AT5G10400 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene97701.t1 | AT3G27360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene97701.t1 | AT1G09200 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene97701.t1 | AT5G10980 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene97701.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene97701.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene97701.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene97701.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene97701.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene97701.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene97701.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 29 | 164 | 6.76e-93 | 266 |
MS.gene97701.t1 | AT5G65350 | 94.853 | 136 | 7 | 0 | 1 | 136 | 1 | 136 | 5.09e-91 | 260 |
MS.gene97701.t1 | AT1G75600 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 1.20e-89 | 256 |
MS.gene97701.t1 | AT1G13370 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 5.32e-89 | 254 |
MS.gene97701.t1 | AT1G19890 | 89.781 | 137 | 13 | 1 | 1 | 136 | 1 | 137 | 1.03e-83 | 241 |
MS.gene97701.t1 | AT5G12910 | 71.111 | 135 | 34 | 2 | 1 | 135 | 1 | 130 | 9.51e-67 | 198 |
MS.gene97701.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene97701.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene97701.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene97701.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
Find 36 sgRNAs with CRISPR-Local
Find 36 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGGTTGCCGGAGCAGATTTC+CGG | 0.243304 | 5.1:+20421288 | None:intergenic |
TTCTTGACTCCTCCGGTTGC+CGG | 0.293014 | 5.1:+20421275 | None:intergenic |
TGAGAAGTTCAGTGCTCTTC+TGG | 0.315268 | 5.1:+20421201 | None:intergenic |
GCTGCTGAAGCTTATCTTGT+TGG | 0.357332 | 5.1:-20421080 | MS.gene97701:CDS |
TCACGAAGTGCAACAGTTCC+AGG | 0.377831 | 5.1:+20421236 | None:intergenic |
AGCAGATTTCCGGGCAGCTT+TGG | 0.390197 | 5.1:+20421298 | None:intergenic |
CGGAAATCTGCTCCGGCAAC+CGG | 0.392471 | 5.1:-20421287 | MS.gene97701:CDS |
CTTCCTTGGTGCCTTTCCTC+CGG | 0.399049 | 5.1:+20421331 | None:intergenic |
GGTTGCCGGAGCAGATTTCC+GGG | 0.407337 | 5.1:+20421289 | None:intergenic |
TTGGTGGCTAGCTGCTTCCT+TGG | 0.412728 | 5.1:+20421317 | None:intergenic |
GAGCAGAAACAGCACTGCTT+TGG | 0.422995 | 5.1:+20421111 | None:intergenic |
TTATCTTGTTGGTTTGTTTG+AGG | 0.428809 | 5.1:-20421069 | MS.gene97701:CDS |
CGATTTCACGAACAAGTCTC+TGG | 0.432729 | 5.1:+20421162 | None:intergenic |
AGATTTCCGGGCAGCTTTGG+TGG | 0.468887 | 5.1:+20421301 | None:intergenic |
AAACAGCACTGCTTTGGAAT+CGG | 0.472990 | 5.1:+20421117 | None:intergenic |
AGCTAGCCACCAAAGCTGCC+CGG | 0.491500 | 5.1:-20421307 | MS.gene97701:CDS |
CGAGCGAGTTGAATATCCTT+AGG | 0.499677 | 5.1:+20421002 | None:intergenic |
GTGTGGCTTCTTGACTCCTC+CGG | 0.501667 | 5.1:+20421268 | None:intergenic |
AGCTGCCCGGAAATCTGCTC+CGG | 0.505877 | 5.1:-20421294 | MS.gene97701:CDS |
TCGCAAATCCACCGGAGGAA+AGG | 0.508505 | 5.1:-20421342 | MS.gene97701:CDS |
CCTTGGTGCCTTTCCTCCGG+TGG | 0.517647 | 5.1:+20421334 | None:intergenic |
AGAGCACTGAACTTCTCATA+AGG | 0.521842 | 5.1:-20421196 | MS.gene97701:CDS |
AGTAACTCTCTTAGCATGAA+TGG | 0.521941 | 5.1:+20421031 | None:intergenic |
GAGAGTTACTATCATGCCTA+AGG | 0.550012 | 5.1:-20421018 | MS.gene97701:CDS |
ACTTGTTCGTGAAATCGCTC+AGG | 0.551065 | 5.1:-20421156 | MS.gene97701:CDS |
CAACTCGCTCGCAGAATCAG+AGG | 0.556058 | 5.1:-20420990 | MS.gene97701:CDS |
CAGTGCTCTTCTGGTACTTG+CGG | 0.559165 | 5.1:+20421210 | None:intergenic |
TCACGAACAAGTCTCTGGAA+TGG | 0.590006 | 5.1:+20421167 | None:intergenic |
AAATCTGCTCCGGCAACCGG+AGG | 0.607496 | 5.1:-20421284 | MS.gene97701:CDS |
AAGCCACACAGATTCCGTCC+TGG | 0.622196 | 5.1:-20421254 | MS.gene97701:CDS |
CAAACCGCTCGCAAATCCAC+CGG | 0.629023 | 5.1:-20421350 | MS.gene97701:CDS |
TCCTCCGGTGGATTTGCGAG+CGG | 0.642208 | 5.1:+20421346 | None:intergenic |
CCACCGGAGGAAAGGCACCA+AGG | 0.647774 | 5.1:-20421334 | MS.gene97701:CDS |
ACCGCTCGCAAATCCACCGG+AGG | 0.676829 | 5.1:-20421347 | MS.gene97701:CDS |
GAAGTGCAACAGTTCCAGGA+CGG | 0.690156 | 5.1:+20421240 | None:intergenic |
GTTCCAGGACGGAATCTGTG+TGG | 0.699556 | 5.1:+20421251 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATCTTGTTGGTTTGTTTG+AGG | - | chr5.1:20421273-20421292 | MS.gene97701:CDS | 30.0% |
AGTAACTCTCTTAGCATGAA+TGG | + | chr5.1:20421314-20421333 | None:intergenic | 35.0% | |
GAGAGTTACTATCATGCCTA+AGG | - | chr5.1:20421324-20421343 | MS.gene97701:CDS | 40.0% | |
!! | AAACAGCACTGCTTTGGAAT+CGG | + | chr5.1:20421228-20421247 | None:intergenic | 40.0% |
!! | AGAGCACTGAACTTCTCATA+AGG | - | chr5.1:20421146-20421165 | MS.gene97701:CDS | 40.0% |
ACTTGTTCGTGAAATCGCTC+AGG | - | chr5.1:20421186-20421205 | MS.gene97701:CDS | 45.0% | |
CGATTTCACGAACAAGTCTC+TGG | + | chr5.1:20421183-20421202 | None:intergenic | 45.0% | |
GCTGCTGAAGCTTATCTTGT+TGG | - | chr5.1:20421262-20421281 | MS.gene97701:CDS | 45.0% | |
TGAGAAGTTCAGTGCTCTTC+TGG | + | chr5.1:20421144-20421163 | None:intergenic | 45.0% | |
! | CGAGCGAGTTGAATATCCTT+AGG | + | chr5.1:20421343-20421362 | None:intergenic | 45.0% |
! | TCACGAACAAGTCTCTGGAA+TGG | + | chr5.1:20421178-20421197 | None:intergenic | 45.0% |
CAGTGCTCTTCTGGTACTTG+CGG | + | chr5.1:20421135-20421154 | None:intergenic | 50.0% | |
GAAGTGCAACAGTTCCAGGA+CGG | + | chr5.1:20421105-20421124 | None:intergenic | 50.0% | |
GAGCAGAAACAGCACTGCTT+TGG | + | chr5.1:20421234-20421253 | None:intergenic | 50.0% | |
TCACGAAGTGCAACAGTTCC+AGG | + | chr5.1:20421109-20421128 | None:intergenic | 50.0% | |
AAGCCACACAGATTCCGTCC+TGG | - | chr5.1:20421088-20421107 | MS.gene97701:CDS | 55.0% | |
AGCAGATTTCCGGGCAGCTT+TGG | + | chr5.1:20421047-20421066 | None:intergenic | 55.0% | |
CAAACCGCTCGCAAATCCAC+CGG | - | chr5.1:20420992-20421011 | MS.gene97701:CDS | 55.0% | |
CAACTCGCTCGCAGAATCAG+AGG | - | chr5.1:20421352-20421371 | MS.gene97701:CDS | 55.0% | |
GTGTGGCTTCTTGACTCCTC+CGG | + | chr5.1:20421077-20421096 | None:intergenic | 55.0% | |
GTTCCAGGACGGAATCTGTG+TGG | + | chr5.1:20421094-20421113 | None:intergenic | 55.0% | |
TCGCAAATCCACCGGAGGAA+AGG | - | chr5.1:20421000-20421019 | MS.gene97701:CDS | 55.0% | |
TTCTTGACTCCTCCGGTTGC+CGG | + | chr5.1:20421070-20421089 | None:intergenic | 55.0% | |
! | AGATTTCCGGGCAGCTTTGG+TGG | + | chr5.1:20421044-20421063 | None:intergenic | 55.0% |
! | TTGGTGGCTAGCTGCTTCCT+TGG | + | chr5.1:20421028-20421047 | None:intergenic | 55.0% |
!! | CTTCCTTGGTGCCTTTCCTC+CGG | + | chr5.1:20421014-20421033 | None:intergenic | 55.0% |
AAATCTGCTCCGGCAACCGG+AGG | - | chr5.1:20421058-20421077 | MS.gene97701:CDS | 60.0% | |
AGCTAGCCACCAAAGCTGCC+CGG | - | chr5.1:20421035-20421054 | MS.gene97701:CDS | 60.0% | |
AGCTGCCCGGAAATCTGCTC+CGG | - | chr5.1:20421048-20421067 | MS.gene97701:CDS | 60.0% | |
CGGAAATCTGCTCCGGCAAC+CGG | - | chr5.1:20421055-20421074 | MS.gene97701:CDS | 60.0% | |
CGGTTGCCGGAGCAGATTTC+CGG | + | chr5.1:20421057-20421076 | None:intergenic | 60.0% | |
GGTTGCCGGAGCAGATTTCC+GGG | + | chr5.1:20421056-20421075 | None:intergenic | 60.0% | |
! | TCCTCCGGTGGATTTGCGAG+CGG | + | chr5.1:20420999-20421018 | None:intergenic | 60.0% |
ACCGCTCGCAAATCCACCGG+AGG | - | chr5.1:20420995-20421014 | MS.gene97701:CDS | 65.0% | |
!! | CCACCGGAGGAAAGGCACCA+AGG | - | chr5.1:20421008-20421027 | MS.gene97701:CDS | 65.0% |
!! | CCTTGGTGCCTTTCCTCCGG+TGG | + | chr5.1:20421011-20421030 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 20420977 | 20421387 | 20420977 | ID=MS.gene97701 |
chr5.1 | mRNA | 20420977 | 20421387 | 20420977 | ID=MS.gene97701.t1;Parent=MS.gene97701 |
chr5.1 | exon | 20420977 | 20421387 | 20420977 | ID=MS.gene97701.t1.exon1;Parent=MS.gene97701.t1 |
chr5.1 | CDS | 20420977 | 20421387 | 20420977 | ID=cds.MS.gene97701.t1;Parent=MS.gene97701.t1 |
Gene Sequence |
Protein sequence |