Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65125.t1 | XP_004512510.2 | 100 | 136 | 0 | 0 | 1 | 136 | 104 | 239 | 5.80E-64 | 253.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65125.t1 | P68429 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.4e-66 | 253.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65125.t1 | A0A1S3TJX1 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.2e-64 | 253.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65125.t1 | MTR_7g059070 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene65125.t1 | MTR_5g029820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene65125.t1 | MTR_5g029770 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene65125.t1 | MTR_4g065990 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene65125.t1 | MTR_4g088150 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene65125.t1 | MTR_2g035230 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene65125.t1 | MTR_8g092720 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene65125.t1 | MTR_8g063500 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene65125.t1 | MTR_8g103245 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene65125.t1 | MTR_8g092820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene65125.t1 | MTR_7g013610 | 100.000 | 136 | 0 | 0 | 1 | 136 | 100 | 235 | 1.10e-95 | 275 |
MS.gene65125.t1 | MTR_4g097175 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene65125.t1 | MTR_1g023630 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene65125.t1 | MTR_8g061940 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene65125.t1 | MTR_8g099430 | 96.324 | 136 | 5 | 0 | 1 | 136 | 1 | 136 | 1.38e-92 | 264 |
MS.gene65125.t1 | MTR_4g097170 | 96.324 | 136 | 5 | 0 | 1 | 136 | 42 | 177 | 2.29e-91 | 262 |
MS.gene65125.t1 | MTR_2g082310 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene65125.t1 | MTR_2g082340 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene65125.t1 | MTR_2g082370 | 85.616 | 146 | 11 | 1 | 1 | 136 | 1 | 146 | 1.74e-82 | 238 |
MS.gene65125.t1 | MTR_2g082400 | 84.559 | 136 | 19 | 2 | 1 | 135 | 1 | 135 | 6.38e-75 | 219 |
MS.gene65125.t1 | MTR_7g013600 | 86.607 | 112 | 15 | 0 | 25 | 136 | 2 | 113 | 1.01e-65 | 195 |
MS.gene65125.t1 | MTR_7g023830 | 67.164 | 134 | 43 | 1 | 1 | 134 | 1 | 133 | 6.48e-56 | 171 |
MS.gene65125.t1 | MTR_1g023630 | 73.504 | 117 | 15 | 3 | 1 | 111 | 1 | 107 | 3.81e-52 | 160 |
MS.gene65125.t1 | MTR_5g024630 | 67.241 | 116 | 35 | 2 | 1 | 116 | 1 | 113 | 1.63e-45 | 144 |
MS.gene65125.t1 | MTR_7g023880 | 58.647 | 133 | 41 | 3 | 3 | 134 | 18 | 137 | 5.46e-43 | 139 |
MS.gene65125.t1 | MTR_5g024530 | 68.182 | 110 | 12 | 2 | 19 | 128 | 68 | 154 | 4.56e-42 | 137 |
MS.gene65125.t1 | MTR_0197s0100 | 100.000 | 66 | 0 | 0 | 1 | 66 | 1 | 66 | 1.45e-40 | 132 |
MS.gene65125.t1 | MTR_8g027840 | 55.102 | 98 | 43 | 1 | 37 | 133 | 28 | 125 | 4.83e-30 | 105 |
MS.gene65125.t1 | MTR_8g105150 | 53.846 | 91 | 10 | 1 | 37 | 127 | 11 | 69 | 1.43e-25 | 92.4 |
MS.gene65125.t1 | MTR_8g092740 | 97.368 | 38 | 1 | 0 | 99 | 136 | 118 | 155 | 4.60e-20 | 80.9 |
MS.gene65125.t1 | MTR_5g089120 | 76.190 | 42 | 10 | 0 | 82 | 123 | 6 | 47 | 6.07e-18 | 73.6 |
MS.gene65125.t1 | MTR_5g024600 | 62.963 | 54 | 20 | 0 | 1 | 54 | 1 | 54 | 1.76e-15 | 66.2 |
MS.gene65125.t1 | MTR_4g128040 | 75.676 | 37 | 9 | 0 | 79 | 115 | 20 | 56 | 3.38e-15 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene65125.t1 | AT5G65360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene65125.t1 | AT5G10390 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene65125.t1 | AT5G10400 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene65125.t1 | AT3G27360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene65125.t1 | AT1G09200 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene65125.t1 | AT5G10980 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene65125.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene65125.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene65125.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene65125.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene65125.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene65125.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene65125.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 29 | 164 | 6.76e-93 | 266 |
MS.gene65125.t1 | AT5G65350 | 94.853 | 136 | 7 | 0 | 1 | 136 | 1 | 136 | 5.09e-91 | 260 |
MS.gene65125.t1 | AT1G75600 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 1.20e-89 | 256 |
MS.gene65125.t1 | AT1G13370 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 5.32e-89 | 254 |
MS.gene65125.t1 | AT1G19890 | 89.781 | 137 | 13 | 1 | 1 | 136 | 1 | 137 | 1.03e-83 | 241 |
MS.gene65125.t1 | AT5G12910 | 71.111 | 135 | 34 | 2 | 1 | 135 | 1 | 130 | 9.51e-67 | 198 |
MS.gene65125.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene65125.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene65125.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene65125.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
Find 35 sgRNAs with CRISPR-Local
Find 37 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCTGATTTCCGTGCGGCTT+TGG | 0.327301 | 7.1:+42449885 | None:intergenic |
TTCACGAAGCGCGACGGTTC+CGG | 0.341493 | 7.1:+42449822 | None:intergenic |
TCACGAAGCGCGACGGTTCC+GGG | 0.353522 | 7.1:+42449823 | None:intergenic |
GCTGCTGAAGCTTATCTTGT+TGG | 0.357332 | 7.1:-42449667 | MS.gene65125:CDS |
GGATTTGCGTGCTGTTTGTT+TGG | 0.431176 | 7.1:+42449942 | None:intergenic |
TGATTTCCGTGCGGCTTTGG+TGG | 0.441149 | 7.1:+42449888 | None:intergenic |
TTCTTCACTCCTCCGGTCGC+CGG | 0.442119 | 7.1:+42449862 | None:intergenic |
CTTGCAAGTTGAATATCCTT+AGG | 0.450286 | 7.1:+42449589 | None:intergenic |
CGGAAATCAGCTCCGGCGAC+CGG | 0.469854 | 7.1:-42449874 | MS.gene65125:CDS |
CAGTGCTCTTCTGATACTTA+CGG | 0.470671 | 7.1:+42449797 | None:intergenic |
TGGTGGCGAGTTGTTTGCGT+GGG | 0.485319 | 7.1:+42449905 | None:intergenic |
CAAGGAGAATTCGTGGTGAA+AGG | 0.485929 | 7.1:-42449570 | MS.gene65125:CDS |
AGCCGCACGGAAATCAGCTC+CGG | 0.497667 | 7.1:-42449881 | MS.gene65125:CDS |
CGACGGTTCCGGGACGGAAA+CGG | 0.513929 | 7.1:+42449833 | None:intergenic |
GAGAGTTACTATTATGCCTA+AGG | 0.517685 | 7.1:-42449605 | MS.gene65125:CDS |
AAGGAGAATTCGTGGTGAAA+GGG | 0.519150 | 7.1:-42449569 | MS.gene65125:CDS |
GTGTGGCTTCTTCACTCCTC+CGG | 0.526132 | 7.1:+42449855 | None:intergenic |
CAACTTGCAAGGAGAATTCG+TGG | 0.532409 | 7.1:-42449577 | MS.gene65125:CDS |
AGAGCACTGAGCTTCTGATA+AGG | 0.532730 | 7.1:-42449783 | MS.gene65125:CDS |
AAGCCACACCGTTTCCGTCC+CGG | 0.544193 | 7.1:-42449841 | MS.gene65125:CDS |
CAAACAGCACGCAAATCCAC+CGG | 0.549355 | 7.1:-42449937 | MS.gene65125:CDS |
TCTTGTTCGTGAAATCGCTC+AGG | 0.549771 | 7.1:-42449743 | MS.gene65125:CDS |
CTAAGGATATTCAACTTGCA+AGG | 0.586821 | 7.1:-42449588 | MS.gene65125:CDS |
TTGGTGGCGAGTTGTTTGCG+TGG | 0.598004 | 7.1:+42449904 | None:intergenic |
TCACGAACAAGACGTTGGAA+TGG | 0.598115 | 7.1:+42449754 | None:intergenic |
AAATCAGCTCCGGCGACCGG+AGG | 0.606043 | 7.1:-42449871 | MS.gene65125:CDS |
ACTGCTCTGAAATCTGAGAT+CGG | 0.610183 | 7.1:+42449711 | None:intergenic |
CGATTTCACGAACAAGACGT+TGG | 0.613448 | 7.1:+42449749 | None:intergenic |
ACGGATTTCACGAAGCGCGA+CGG | 0.624291 | 7.1:+42449816 | None:intergenic |
AACTCGCCACCAAAGCCGCA+CGG | 0.635817 | 7.1:-42449894 | MS.gene65125:CDS |
GAAGCGCGACGGTTCCGGGA+CGG | 0.640203 | 7.1:+42449827 | None:intergenic |
GTTCCGGGACGGAAACGGTG+TGG | 0.652674 | 7.1:+42449838 | None:intergenic |
ACAGCACGCAAATCCACCGG+CGG | 0.691035 | 7.1:-42449934 | MS.gene65125:CDS |
GGTGGCGAGTTGTTTGCGTG+GGG | 0.692652 | 7.1:+42449906 | None:intergenic |
CGCCGGAGCTGATTTCCGTG+CGG | 0.701307 | 7.1:+42449879 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
CTAAGGATATTCAACTTGCA+AGG | - | chr7.1:42449928-42449947 | MS.gene65125:CDS | 35.0% | |
GAGAGTTACTATTATGCCTA+AGG | - | chr7.1:42449911-42449930 | MS.gene65125:CDS | 35.0% | |
! | CTTGCAAGTTGAATATCCTT+AGG | + | chr7.1:42449930-42449949 | None:intergenic | 35.0% |
AAGGAGAATTCGTGGTGAAA+GGG | - | chr7.1:42449947-42449966 | MS.gene65125:CDS | 40.0% | |
CAGTGCTCTTCTGATACTTA+CGG | + | chr7.1:42449722-42449741 | None:intergenic | 40.0% | |
!! | ACTGCTCTGAAATCTGAGAT+CGG | + | chr7.1:42449808-42449827 | None:intergenic | 40.0% |
CAACTTGCAAGGAGAATTCG+TGG | - | chr7.1:42449939-42449958 | MS.gene65125:CDS | 45.0% | |
CAAGGAGAATTCGTGGTGAA+AGG | - | chr7.1:42449946-42449965 | MS.gene65125:CDS | 45.0% | |
CGATTTCACGAACAAGACGT+TGG | + | chr7.1:42449770-42449789 | None:intergenic | 45.0% | |
GCTGCTGAAGCTTATCTTGT+TGG | - | chr7.1:42449849-42449868 | MS.gene65125:CDS | 45.0% | |
TCACGAACAAGACGTTGGAA+TGG | + | chr7.1:42449765-42449784 | None:intergenic | 45.0% | |
TCTTGTTCGTGAAATCGCTC+AGG | - | chr7.1:42449773-42449792 | MS.gene65125:CDS | 45.0% | |
!! | AGAGCACTGAGCTTCTGATA+AGG | - | chr7.1:42449733-42449752 | MS.gene65125:CDS | 45.0% |
!! | GGATTTGCGTGCTGTTTGTT+TGG | + | chr7.1:42449577-42449596 | None:intergenic | 45.0% |
CAAACAGCACGCAAATCCAC+CGG | - | chr7.1:42449579-42449598 | MS.gene65125:CDS | 50.0% | |
ACGGATTTCACGAAGCGCGA+CGG | + | chr7.1:42449703-42449722 | None:intergenic | 55.0% | |
GTGTGGCTTCTTCACTCCTC+CGG | + | chr7.1:42449664-42449683 | None:intergenic | 55.0% | |
! | AGCTGATTTCCGTGCGGCTT+TGG | + | chr7.1:42449634-42449653 | None:intergenic | 55.0% |
! | TGATTTCCGTGCGGCTTTGG+TGG | + | chr7.1:42449631-42449650 | None:intergenic | 55.0% |
! | TGGTGGCGAGTTGTTTGCGT+GGG | + | chr7.1:42449614-42449633 | None:intergenic | 55.0% |
!! | TTGGTGGCGAGTTGTTTGCG+TGG | + | chr7.1:42449615-42449634 | None:intergenic | 55.0% |
AACTCGCCACCAAAGCCGCA+CGG | - | chr7.1:42449622-42449641 | MS.gene65125:CDS | 60.0% | |
AAGCCACACCGTTTCCGTCC+CGG | - | chr7.1:42449675-42449694 | MS.gene65125:CDS | 60.0% | |
ACAGCACGCAAATCCACCGG+CGG | - | chr7.1:42449582-42449601 | MS.gene65125:CDS | 60.0% | |
AGCCGCACGGAAATCAGCTC+CGG | - | chr7.1:42449635-42449654 | MS.gene65125:CDS | 60.0% | |
GGTGGCGAGTTGTTTGCGTG+GGG | + | chr7.1:42449613-42449632 | None:intergenic | 60.0% | |
TTCACGAAGCGCGACGGTTC+CGG | + | chr7.1:42449697-42449716 | None:intergenic | 60.0% | |
TTCTTCACTCCTCCGGTCGC+CGG | + | chr7.1:42449657-42449676 | None:intergenic | 60.0% | |
! | TTTGCGTGGGGCTTTTCCGC+CGG | + | chr7.1:42449601-42449620 | None:intergenic | 60.0% |
AAATCAGCTCCGGCGACCGG+AGG | - | chr7.1:42449645-42449664 | MS.gene65125:CDS | 65.0% | |
CGACGGTTCCGGGACGGAAA+CGG | + | chr7.1:42449686-42449705 | None:intergenic | 65.0% | |
CGGAAATCAGCTCCGGCGAC+CGG | - | chr7.1:42449642-42449661 | MS.gene65125:CDS | 65.0% | |
GTTCCGGGACGGAAACGGTG+TGG | + | chr7.1:42449681-42449700 | None:intergenic | 65.0% | |
TCACGAAGCGCGACGGTTCC+GGG | + | chr7.1:42449696-42449715 | None:intergenic | 65.0% | |
! | CGCCGGAGCTGATTTCCGTG+CGG | + | chr7.1:42449640-42449659 | None:intergenic | 65.0% |
GAAGCGCGACGGTTCCGGGA+CGG | + | chr7.1:42449692-42449711 | None:intergenic | 70.0% | |
! | GCGTGGGGCTTTTCCGCCGG+TGG | + | chr7.1:42449598-42449617 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 42449564 | 42449974 | 42449564 | ID=MS.gene65125 |
chr7.1 | mRNA | 42449564 | 42449974 | 42449564 | ID=MS.gene65125.t1;Parent=MS.gene65125 |
chr7.1 | exon | 42449564 | 42449974 | 42449564 | ID=MS.gene65125.t1.exon1;Parent=MS.gene65125.t1 |
chr7.1 | CDS | 42449564 | 42449974 | 42449564 | ID=cds.MS.gene65125.t1;Parent=MS.gene65125.t1 |
Gene Sequence |
Protein sequence |