Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28432.t1 | XP_004512510.2 | 100 | 136 | 0 | 0 | 1 | 136 | 104 | 239 | 5.80E-64 | 253.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28432.t1 | P68429 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.4e-66 | 253.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28432.t1 | A0A1S3TJX1 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.2e-64 | 253.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28432.t1 | MTR_7g059070 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28432.t1 | MTR_5g029820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28432.t1 | MTR_5g029770 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28432.t1 | MTR_4g065990 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28432.t1 | MTR_4g088150 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28432.t1 | MTR_2g035230 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28432.t1 | MTR_8g092720 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28432.t1 | MTR_8g063500 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28432.t1 | MTR_8g103245 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28432.t1 | MTR_8g092820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28432.t1 | MTR_7g013610 | 100.000 | 136 | 0 | 0 | 1 | 136 | 100 | 235 | 1.10e-95 | 275 |
MS.gene28432.t1 | MTR_4g097175 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene28432.t1 | MTR_1g023630 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene28432.t1 | MTR_8g061940 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene28432.t1 | MTR_8g099430 | 96.324 | 136 | 5 | 0 | 1 | 136 | 1 | 136 | 1.38e-92 | 264 |
MS.gene28432.t1 | MTR_4g097170 | 96.324 | 136 | 5 | 0 | 1 | 136 | 42 | 177 | 2.29e-91 | 262 |
MS.gene28432.t1 | MTR_2g082310 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene28432.t1 | MTR_2g082340 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene28432.t1 | MTR_2g082370 | 85.616 | 146 | 11 | 1 | 1 | 136 | 1 | 146 | 1.74e-82 | 238 |
MS.gene28432.t1 | MTR_2g082400 | 84.559 | 136 | 19 | 2 | 1 | 135 | 1 | 135 | 6.38e-75 | 219 |
MS.gene28432.t1 | MTR_7g013600 | 86.607 | 112 | 15 | 0 | 25 | 136 | 2 | 113 | 1.01e-65 | 195 |
MS.gene28432.t1 | MTR_7g023830 | 67.164 | 134 | 43 | 1 | 1 | 134 | 1 | 133 | 6.48e-56 | 171 |
MS.gene28432.t1 | MTR_1g023630 | 73.504 | 117 | 15 | 3 | 1 | 111 | 1 | 107 | 3.81e-52 | 160 |
MS.gene28432.t1 | MTR_5g024630 | 67.241 | 116 | 35 | 2 | 1 | 116 | 1 | 113 | 1.63e-45 | 144 |
MS.gene28432.t1 | MTR_7g023880 | 58.647 | 133 | 41 | 3 | 3 | 134 | 18 | 137 | 5.46e-43 | 139 |
MS.gene28432.t1 | MTR_5g024530 | 68.182 | 110 | 12 | 2 | 19 | 128 | 68 | 154 | 4.56e-42 | 137 |
MS.gene28432.t1 | MTR_0197s0100 | 100.000 | 66 | 0 | 0 | 1 | 66 | 1 | 66 | 1.45e-40 | 132 |
MS.gene28432.t1 | MTR_8g027840 | 55.102 | 98 | 43 | 1 | 37 | 133 | 28 | 125 | 4.83e-30 | 105 |
MS.gene28432.t1 | MTR_8g105150 | 53.846 | 91 | 10 | 1 | 37 | 127 | 11 | 69 | 1.43e-25 | 92.4 |
MS.gene28432.t1 | MTR_8g092740 | 97.368 | 38 | 1 | 0 | 99 | 136 | 118 | 155 | 4.60e-20 | 80.9 |
MS.gene28432.t1 | MTR_5g089120 | 76.190 | 42 | 10 | 0 | 82 | 123 | 6 | 47 | 6.07e-18 | 73.6 |
MS.gene28432.t1 | MTR_5g024600 | 62.963 | 54 | 20 | 0 | 1 | 54 | 1 | 54 | 1.76e-15 | 66.2 |
MS.gene28432.t1 | MTR_4g128040 | 75.676 | 37 | 9 | 0 | 79 | 115 | 20 | 56 | 3.38e-15 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28432.t1 | AT5G65360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene28432.t1 | AT5G10390 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene28432.t1 | AT5G10400 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene28432.t1 | AT3G27360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene28432.t1 | AT1G09200 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene28432.t1 | AT5G10980 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene28432.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene28432.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene28432.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene28432.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene28432.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene28432.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene28432.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 29 | 164 | 6.76e-93 | 266 |
MS.gene28432.t1 | AT5G65350 | 94.853 | 136 | 7 | 0 | 1 | 136 | 1 | 136 | 5.09e-91 | 260 |
MS.gene28432.t1 | AT1G75600 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 1.20e-89 | 256 |
MS.gene28432.t1 | AT1G13370 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 5.32e-89 | 254 |
MS.gene28432.t1 | AT1G19890 | 89.781 | 137 | 13 | 1 | 1 | 136 | 1 | 137 | 1.03e-83 | 241 |
MS.gene28432.t1 | AT5G12910 | 71.111 | 135 | 34 | 2 | 1 | 135 | 1 | 130 | 9.51e-67 | 198 |
MS.gene28432.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene28432.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene28432.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene28432.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
Find 38 sgRNAs with CRISPR-Local
Find 38 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTTGGTTGCCAGCTGCTTC+CGG | 0.174491 | 4.4:+8750048 | None:intergenic |
CGGTCGCCGGAGCTGATTTC+CGG | 0.242180 | 4.4:+8750021 | None:intergenic |
TTTGGTTGCCAGCTGCTTCC+GGG | 0.259335 | 4.4:+8750049 | None:intergenic |
AGCTGATTTCCGGGCGGCTT+TGG | 0.313671 | 4.4:+8750031 | None:intergenic |
TCTCTCAAAGCAACTGTTCC+AGG | 0.333816 | 4.4:+8749969 | None:intergenic |
CAGTGCTGTATCTGCTCTTC+AGG | 0.340320 | 4.4:-8749838 | MS.gene28432:CDS |
GGTCGCCGGAGCTGATTTCC+GGG | 0.345559 | 4.4:+8750022 | None:intergenic |
GGAAGCTGCTGAGGCTTACT+TGG | 0.361475 | 4.4:-8749817 | MS.gene28432:CDS |
CAAGGCTCCCCGGAAGCAGC+TGG | 0.396825 | 4.4:-8750057 | MS.gene28432:CDS |
TTCTTCACTCCTCCGGTCGC+CGG | 0.442119 | 4.4:+8750008 | None:intergenic |
GCTGCTGAGGCTTACTTGGT+TGG | 0.450601 | 4.4:-8749813 | MS.gene28432:CDS |
GACGTTGGAATGGAAGTTTA+CGG | 0.458530 | 4.4:+8749910 | None:intergenic |
CTTGCAAGCTGAATGTCCTT+AGG | 0.462646 | 4.4:+8749735 | None:intergenic |
CGGAAATCAGCTCCGGCGAC+CGG | 0.464380 | 4.4:-8750020 | MS.gene28432:CDS |
CCACCGGCGGCAAGGCTCCC+CGG | 0.480154 | 4.4:-8750067 | MS.gene28432:CDS |
TCGCAAGTCCACCGGCGGCA+AGG | 0.488583 | 4.4:-8750075 | MS.gene28432:CDS |
AGCTGGCAACCAAAGCCGCC+CGG | 0.490048 | 4.4:-8750040 | MS.gene28432:CDS |
AGCCGCCCGGAAATCAGCTC+CGG | 0.497667 | 4.4:-8750027 | MS.gene28432:CDS |
GTGTGGCTTCTTCACTCCTC+CGG | 0.499925 | 4.4:+8750001 | None:intergenic |
CAGTGCTCTTCTGATACTTA+CGG | 0.501233 | 4.4:+8749943 | None:intergenic |
CTTCCGGGGAGCCTTGCCGC+CGG | 0.507682 | 4.4:+8750064 | None:intergenic |
TTGGTTGCCAGCTGCTTCCG+GGG | 0.508384 | 4.4:+8750050 | None:intergenic |
TGCTCTTCAGGAAGCTGCTG+AGG | 0.517538 | 4.4:-8749826 | MS.gene28432:CDS |
CCGGGGAGCCTTGCCGCCGG+TGG | 0.548377 | 4.4:+8750067 | None:intergenic |
GGACTTGCGAGCAGTCTGCT+TGG | 0.551577 | 4.4:+8750088 | None:intergenic |
CAGACTGCTCGCAAGTCCAC+CGG | 0.562052 | 4.4:-8750083 | MS.gene28432:CDS |
GAGAGTTACAATCATGCCTA+AGG | 0.570792 | 4.4:-8749751 | MS.gene28432:CDS |
AAGAAGAATCAGAGGAGAGA+GGG | 0.573886 | 4.4:-8749715 | MS.gene28432:CDS |
TCACGAACAAGACGTTGGAA+TGG | 0.591294 | 4.4:+8749900 | None:intergenic |
AAATCAGCTCCGGCGACCGG+AGG | 0.599225 | 4.4:-8750017 | MS.gene28432:CDS |
CAAGAAGAATCAGAGGAGAG+AGG | 0.603703 | 4.4:-8749716 | MS.gene28432:CDS |
CAATTTCACGAACAAGACGT+TGG | 0.614742 | 4.4:+8749895 | None:intergenic |
CAGCTTGCAAGAAGAATCAG+AGG | 0.621034 | 4.4:-8749723 | MS.gene28432:CDS |
AAGATTTCAAGACAGATCTG+AGG | 0.632208 | 4.4:-8749869 | MS.gene28432:CDS |
ACTGCTCGCAAGTCCACCGG+CGG | 0.647164 | 4.4:-8750080 | MS.gene28432:CDS |
AAGCCACACAGATTCAGACC+TGG | 0.672238 | 4.4:-8749987 | MS.gene28432:CDS |
GTTCCAGGTCTGAATCTGTG+TGG | 0.688220 | 4.4:+8749984 | None:intergenic |
CGCCGGAGCTGATTTCCGGG+CGG | 0.701307 | 4.4:+8750025 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
AAGATTTCAAGACAGATCTG+AGG | - | chr4.4:8749939-8749958 | MS.gene28432:CDS | 35.0% | |
AAGAAGAATCAGAGGAGAGA+GGG | - | chr4.4:8750093-8750112 | MS.gene28432:CDS | 40.0% | |
CAATTTCACGAACAAGACGT+TGG | + | chr4.4:8749916-8749935 | None:intergenic | 40.0% | |
CAGTGCTCTTCTGATACTTA+CGG | + | chr4.4:8749868-8749887 | None:intergenic | 40.0% | |
GACGTTGGAATGGAAGTTTA+CGG | + | chr4.4:8749901-8749920 | None:intergenic | 40.0% | |
GAGAGTTACAATCATGCCTA+AGG | - | chr4.4:8750057-8750076 | MS.gene28432:CDS | 40.0% | |
CAAGAAGAATCAGAGGAGAG+AGG | - | chr4.4:8750092-8750111 | MS.gene28432:CDS | 45.0% | |
CAGCTTGCAAGAAGAATCAG+AGG | - | chr4.4:8750085-8750104 | MS.gene28432:CDS | 45.0% | |
CTTGCAAGCTGAATGTCCTT+AGG | + | chr4.4:8750076-8750095 | None:intergenic | 45.0% | |
TCACGAACAAGACGTTGGAA+TGG | + | chr4.4:8749911-8749930 | None:intergenic | 45.0% | |
TCTCTCAAAGCAACTGTTCC+AGG | + | chr4.4:8749842-8749861 | None:intergenic | 45.0% | |
AAGCCACACAGATTCAGACC+TGG | - | chr4.4:8749821-8749840 | MS.gene28432:CDS | 50.0% | |
CAGTGCTGTATCTGCTCTTC+AGG | - | chr4.4:8749970-8749989 | MS.gene28432:CDS | 50.0% | |
GTTCCAGGTCTGAATCTGTG+TGG | + | chr4.4:8749827-8749846 | None:intergenic | 50.0% | |
CTTTGGTTGCCAGCTGCTTC+CGG | + | chr4.4:8749763-8749782 | None:intergenic | 55.0% | |
GCTGCTGAGGCTTACTTGGT+TGG | - | chr4.4:8749995-8750014 | MS.gene28432:CDS | 55.0% | |
GGAAGCTGCTGAGGCTTACT+TGG | - | chr4.4:8749991-8750010 | MS.gene28432:CDS | 55.0% | |
GTGTGGCTTCTTCACTCCTC+CGG | + | chr4.4:8749810-8749829 | None:intergenic | 55.0% | |
TGCTCTTCAGGAAGCTGCTG+AGG | - | chr4.4:8749982-8750001 | MS.gene28432:CDS | 55.0% | |
TTTGGTTGCCAGCTGCTTCC+GGG | + | chr4.4:8749762-8749781 | None:intergenic | 55.0% | |
CAGACTGCTCGCAAGTCCAC+CGG | - | chr4.4:8749725-8749744 | MS.gene28432:CDS | 60.0% | |
GGACTTGCGAGCAGTCTGCT+TGG | + | chr4.4:8749723-8749742 | None:intergenic | 60.0% | |
TTCTTCACTCCTCCGGTCGC+CGG | + | chr4.4:8749803-8749822 | None:intergenic | 60.0% | |
TTGGTTGCCAGCTGCTTCCG+GGG | + | chr4.4:8749761-8749780 | None:intergenic | 60.0% | |
! | AGCTGATTTCCGGGCGGCTT+TGG | + | chr4.4:8749780-8749799 | None:intergenic | 60.0% |
AAATCAGCTCCGGCGACCGG+AGG | - | chr4.4:8749791-8749810 | MS.gene28432:CDS | 65.0% | |
ACTGCTCGCAAGTCCACCGG+CGG | - | chr4.4:8749728-8749747 | MS.gene28432:CDS | 65.0% | |
AGCCGCCCGGAAATCAGCTC+CGG | - | chr4.4:8749781-8749800 | MS.gene28432:CDS | 65.0% | |
AGCTGGCAACCAAAGCCGCC+CGG | - | chr4.4:8749768-8749787 | MS.gene28432:CDS | 65.0% | |
CGGAAATCAGCTCCGGCGAC+CGG | - | chr4.4:8749788-8749807 | MS.gene28432:CDS | 65.0% | |
! | CGGTCGCCGGAGCTGATTTC+CGG | + | chr4.4:8749790-8749809 | None:intergenic | 65.0% |
! | GGTCGCCGGAGCTGATTTCC+GGG | + | chr4.4:8749789-8749808 | None:intergenic | 65.0% |
CAAGGCTCCCCGGAAGCAGC+TGG | - | chr4.4:8749751-8749770 | MS.gene28432:CDS | 70.0% | |
TCGCAAGTCCACCGGCGGCA+AGG | - | chr4.4:8749733-8749752 | MS.gene28432:CDS | 70.0% | |
! | CGCCGGAGCTGATTTCCGGG+CGG | + | chr4.4:8749786-8749805 | None:intergenic | 70.0% |
CTTCCGGGGAGCCTTGCCGC+CGG | + | chr4.4:8749747-8749766 | None:intergenic | 75.0% | |
! | CCACCGGCGGCAAGGCTCCC+CGG | - | chr4.4:8749741-8749760 | MS.gene28432:CDS | 80.0% |
! | CCGGGGAGCCTTGCCGCCGG+TGG | + | chr4.4:8749744-8749763 | None:intergenic | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 8749710 | 8750120 | 8749710 | ID=MS.gene28432 |
chr4.4 | mRNA | 8749710 | 8750120 | 8749710 | ID=MS.gene28432.t1;Parent=MS.gene28432 |
chr4.4 | exon | 8749710 | 8750120 | 8749710 | ID=MS.gene28432.t1.exon1;Parent=MS.gene28432.t1 |
chr4.4 | CDS | 8749710 | 8750120 | 8749710 | ID=cds.MS.gene28432.t1;Parent=MS.gene28432.t1 |
Gene Sequence |
Protein sequence |