Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038612.t1 | XP_004512510.2 | 100 | 136 | 0 | 0 | 1 | 136 | 104 | 239 | 5.80E-64 | 253.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038612.t1 | P68429 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.4e-66 | 253.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038612.t1 | A0A1S3TJX1 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.2e-64 | 253.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038612.t1 | MTR_7g059070 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene038612.t1 | MTR_5g029820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene038612.t1 | MTR_5g029770 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene038612.t1 | MTR_4g065990 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene038612.t1 | MTR_4g088150 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene038612.t1 | MTR_2g035230 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene038612.t1 | MTR_8g092720 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene038612.t1 | MTR_8g063500 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene038612.t1 | MTR_8g103245 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene038612.t1 | MTR_8g092820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene038612.t1 | MTR_7g013610 | 100.000 | 136 | 0 | 0 | 1 | 136 | 100 | 235 | 1.10e-95 | 275 |
MS.gene038612.t1 | MTR_4g097175 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene038612.t1 | MTR_1g023630 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene038612.t1 | MTR_8g061940 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene038612.t1 | MTR_8g099430 | 96.324 | 136 | 5 | 0 | 1 | 136 | 1 | 136 | 1.38e-92 | 264 |
MS.gene038612.t1 | MTR_4g097170 | 96.324 | 136 | 5 | 0 | 1 | 136 | 42 | 177 | 2.29e-91 | 262 |
MS.gene038612.t1 | MTR_2g082310 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene038612.t1 | MTR_2g082340 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene038612.t1 | MTR_2g082370 | 85.616 | 146 | 11 | 1 | 1 | 136 | 1 | 146 | 1.74e-82 | 238 |
MS.gene038612.t1 | MTR_2g082400 | 84.559 | 136 | 19 | 2 | 1 | 135 | 1 | 135 | 6.38e-75 | 219 |
MS.gene038612.t1 | MTR_7g013600 | 86.607 | 112 | 15 | 0 | 25 | 136 | 2 | 113 | 1.01e-65 | 195 |
MS.gene038612.t1 | MTR_7g023830 | 67.164 | 134 | 43 | 1 | 1 | 134 | 1 | 133 | 6.48e-56 | 171 |
MS.gene038612.t1 | MTR_1g023630 | 73.504 | 117 | 15 | 3 | 1 | 111 | 1 | 107 | 3.81e-52 | 160 |
MS.gene038612.t1 | MTR_5g024630 | 67.241 | 116 | 35 | 2 | 1 | 116 | 1 | 113 | 1.63e-45 | 144 |
MS.gene038612.t1 | MTR_7g023880 | 58.647 | 133 | 41 | 3 | 3 | 134 | 18 | 137 | 5.46e-43 | 139 |
MS.gene038612.t1 | MTR_5g024530 | 68.182 | 110 | 12 | 2 | 19 | 128 | 68 | 154 | 4.56e-42 | 137 |
MS.gene038612.t1 | MTR_0197s0100 | 100.000 | 66 | 0 | 0 | 1 | 66 | 1 | 66 | 1.45e-40 | 132 |
MS.gene038612.t1 | MTR_8g027840 | 55.102 | 98 | 43 | 1 | 37 | 133 | 28 | 125 | 4.83e-30 | 105 |
MS.gene038612.t1 | MTR_8g105150 | 53.846 | 91 | 10 | 1 | 37 | 127 | 11 | 69 | 1.43e-25 | 92.4 |
MS.gene038612.t1 | MTR_8g092740 | 97.368 | 38 | 1 | 0 | 99 | 136 | 118 | 155 | 4.60e-20 | 80.9 |
MS.gene038612.t1 | MTR_5g089120 | 76.190 | 42 | 10 | 0 | 82 | 123 | 6 | 47 | 6.07e-18 | 73.6 |
MS.gene038612.t1 | MTR_5g024600 | 62.963 | 54 | 20 | 0 | 1 | 54 | 1 | 54 | 1.76e-15 | 66.2 |
MS.gene038612.t1 | MTR_4g128040 | 75.676 | 37 | 9 | 0 | 79 | 115 | 20 | 56 | 3.38e-15 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038612.t1 | AT5G65360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene038612.t1 | AT5G10390 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene038612.t1 | AT5G10400 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene038612.t1 | AT3G27360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene038612.t1 | AT1G09200 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene038612.t1 | AT5G10980 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene038612.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene038612.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene038612.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene038612.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene038612.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene038612.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene038612.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 29 | 164 | 6.76e-93 | 266 |
MS.gene038612.t1 | AT5G65350 | 94.853 | 136 | 7 | 0 | 1 | 136 | 1 | 136 | 5.09e-91 | 260 |
MS.gene038612.t1 | AT1G75600 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 1.20e-89 | 256 |
MS.gene038612.t1 | AT1G13370 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 5.32e-89 | 254 |
MS.gene038612.t1 | AT1G19890 | 89.781 | 137 | 13 | 1 | 1 | 136 | 1 | 137 | 1.03e-83 | 241 |
MS.gene038612.t1 | AT5G12910 | 71.111 | 135 | 34 | 2 | 1 | 135 | 1 | 130 | 9.51e-67 | 198 |
MS.gene038612.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene038612.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene038612.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene038612.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
Find 41 sgRNAs with CRISPR-Local
Find 41 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAAGAAGCCACACCGTTTC+AGG | 0.224781 | 8.3:-38668961 | MS.gene038612:CDS |
TCACGGAGTGCGACGGTTCC+TGG | 0.249130 | 8.3:+38668938 | None:intergenic |
TGAGTAGTTCGGTGCTCTTC+TGG | 0.344215 | 8.3:+38668903 | None:intergenic |
GCGGCGGAGGCTTATCTTGT+TGG | 0.386513 | 8.3:-38668782 | MS.gene038612:CDS |
CTTCCTTGGTGCTTTGCCGC+CGG | 0.391014 | 8.3:+38669033 | None:intergenic |
TTTGTTGCGAGTTGCTTCCT+TGG | 0.401679 | 8.3:+38669019 | None:intergenic |
TTCTTCACTCCGCCGGTCGC+CGG | 0.410833 | 8.3:+38668977 | None:intergenic |
CCTTGGTGCTTTGCCGCCGG+TGG | 0.443251 | 8.3:+38669036 | None:intergenic |
TTATCTTGTTGGATTGTTTG+AGG | 0.444671 | 8.3:-38668771 | MS.gene038612:CDS |
GGCGCTGCAAGAAGCGGCGG+AGG | 0.459160 | 8.3:-38668795 | MS.gene038612:CDS |
CGGAAATCTGCTCCGGCGAC+CGG | 0.465307 | 8.3:-38668989 | MS.gene038612:CDS |
CGACGGTTCCTGGCCTGAAA+CGG | 0.480580 | 8.3:+38668948 | None:intergenic |
GACGCTGGAAAGGAAGCTTC+CGG | 0.481198 | 8.3:+38668879 | None:intergenic |
CTAGCAAGCTGAATATCCTT+AGG | 0.499598 | 8.3:+38668704 | None:intergenic |
AAGCCACACCGTTTCAGGCC+AGG | 0.512079 | 8.3:-38668956 | MS.gene038612:CDS |
CTAAGGATATTCAGCTTGCT+AGG | 0.512436 | 8.3:-38668703 | MS.gene038612:CDS |
AGCCGCTCGGAAATCTGCTC+CGG | 0.521558 | 8.3:-38668996 | MS.gene038612:CDS |
AAGCTTCCGGATGAGTAGTT+CGG | 0.529555 | 8.3:+38668892 | None:intergenic |
ACACAGCAGAGCTCTGAAAA+CGG | 0.532576 | 8.3:+38668819 | None:intergenic |
GTGTGGCTTCTTCACTCCGC+CGG | 0.542673 | 8.3:+38668970 | None:intergenic |
CGGTGCTCTTCTGGTACTTG+CGG | 0.546004 | 8.3:+38668912 | None:intergenic |
GCGTGTTACTATCATGCCTA+AGG | 0.550012 | 8.3:-38668720 | MS.gene038612:CDS |
AAATCTGCTCCGGCGACCGG+CGG | 0.555426 | 8.3:-38668986 | MS.gene038612:CDS |
TCTGGTACTTGCGGATCTCA+CGG | 0.559013 | 8.3:+38668921 | None:intergenic |
AGAGCACCGAACTACTCATC+CGG | 0.565108 | 8.3:-38668898 | MS.gene038612:CDS |
CAAACTGCACGCAAATCCAC+CGG | 0.574254 | 8.3:-38669052 | MS.gene038612:CDS |
TCTTGTTCGTGAGATCGCTC+AGG | 0.579084 | 8.3:-38668858 | MS.gene038612:CDS |
TCACGAACAAGACGCTGGAA+AGG | 0.582899 | 8.3:+38668869 | None:intergenic |
AACTCGCAACAAAAGCCGCT+CGG | 0.592966 | 8.3:-38669009 | MS.gene038612:CDS |
CGATCTCACGAACAAGACGC+TGG | 0.602860 | 8.3:+38668864 | None:intergenic |
TGTGTCGGCGCTGCAAGAAG+CGG | 0.603200 | 8.3:-38668801 | MS.gene038612:CDS |
GTCGGCGCTGCAAGAAGCGG+CGG | 0.613578 | 8.3:-38668798 | MS.gene038612:CDS |
AAGATCAAGCACGCTCGCCA+CGG | 0.626947 | 8.3:+38668675 | None:intergenic |
CCACCGGCGGCAAAGCACCA+AGG | 0.632902 | 8.3:-38669036 | MS.gene038612:CDS |
GCGGATCTCACGGAGTGCGA+CGG | 0.634415 | 8.3:+38668931 | None:intergenic |
GTTCCTGGCCTGAAACGGTG+TGG | 0.654320 | 8.3:+38668953 | None:intergenic |
ACTGCACGCAAATCCACCGG+CGG | 0.661692 | 8.3:-38669049 | MS.gene038612:CDS |
CAGCTTGCTAGGCGTATCCG+TGG | 0.666195 | 8.3:-38668692 | MS.gene038612:CDS |
GATCGCTCAGGATTTCAAGA+CGG | 0.679659 | 8.3:-38668846 | MS.gene038612:CDS |
GCTTAGCATGAATAGCGCAA+AGG | 0.690434 | 8.3:+38668741 | None:intergenic |
CGCCGGAGCAGATTTCCGAG+CGG | 0.721476 | 8.3:+38668994 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
TTATCTTGTTGGATTGTTTG+AGG | - | chr8.3:38668975-38668994 | MS.gene038612:CDS | 30.0% | |
CTAGCAAGCTGAATATCCTT+AGG | + | chr8.3:38669045-38669064 | None:intergenic | 40.0% | |
! | CTAAGGATATTCAGCTTGCT+AGG | - | chr8.3:38669043-38669062 | MS.gene038612:CDS | 40.0% |
AAGCTTCCGGATGAGTAGTT+CGG | + | chr8.3:38668857-38668876 | None:intergenic | 45.0% | |
GATCGCTCAGGATTTCAAGA+CGG | - | chr8.3:38668900-38668919 | MS.gene038612:CDS | 45.0% | |
GCTTAGCATGAATAGCGCAA+AGG | + | chr8.3:38669008-38669027 | None:intergenic | 45.0% | |
TTTGTTGCGAGTTGCTTCCT+TGG | + | chr8.3:38668730-38668749 | None:intergenic | 45.0% | |
! | GCGTGTTACTATCATGCCTA+AGG | - | chr8.3:38669026-38669045 | MS.gene038612:CDS | 45.0% |
! | TTTTCAGAGCTCTGCTGTGT+CGG | - | chr8.3:38668930-38668949 | MS.gene038612:CDS | 45.0% |
!! | ACACAGCAGAGCTCTGAAAA+CGG | + | chr8.3:38668930-38668949 | None:intergenic | 45.0% |
AACTCGCAACAAAAGCCGCT+CGG | - | chr8.3:38668737-38668756 | MS.gene038612:CDS | 50.0% | |
CAAACTGCACGCAAATCCAC+CGG | - | chr8.3:38668694-38668713 | MS.gene038612:CDS | 50.0% | |
TCACGAACAAGACGCTGGAA+AGG | + | chr8.3:38668880-38668899 | None:intergenic | 50.0% | |
TCTGGTACTTGCGGATCTCA+CGG | + | chr8.3:38668828-38668847 | None:intergenic | 50.0% | |
TCTTGTTCGTGAGATCGCTC+AGG | - | chr8.3:38668888-38668907 | MS.gene038612:CDS | 50.0% | |
TGAAGAAGCCACACCGTTTC+AGG | - | chr8.3:38668785-38668804 | MS.gene038612:CDS | 50.0% | |
!! | AGAGCACCGAACTACTCATC+CGG | - | chr8.3:38668848-38668867 | MS.gene038612:CDS | 50.0% |
!! | TGAGTAGTTCGGTGCTCTTC+TGG | + | chr8.3:38668846-38668865 | None:intergenic | 50.0% |
CGATCTCACGAACAAGACGC+TGG | + | chr8.3:38668885-38668904 | None:intergenic | 55.0% | |
CGGTGCTCTTCTGGTACTTG+CGG | + | chr8.3:38668837-38668856 | None:intergenic | 55.0% | |
GACGCTGGAAAGGAAGCTTC+CGG | + | chr8.3:38668870-38668889 | None:intergenic | 55.0% | |
AAGCCACACCGTTTCAGGCC+AGG | - | chr8.3:38668790-38668809 | MS.gene038612:CDS | 60.0% | |
ACTGCACGCAAATCCACCGG+CGG | - | chr8.3:38668697-38668716 | MS.gene038612:CDS | 60.0% | |
AGCCGCTCGGAAATCTGCTC+CGG | - | chr8.3:38668750-38668769 | MS.gene038612:CDS | 60.0% | |
CGACGGTTCCTGGCCTGAAA+CGG | + | chr8.3:38668801-38668820 | None:intergenic | 60.0% | |
GCGGCGGAGGCTTATCTTGT+TGG | - | chr8.3:38668964-38668983 | MS.gene038612:CDS | 60.0% | |
GTGTGGCTTCTTCACTCCGC+CGG | + | chr8.3:38668779-38668798 | None:intergenic | 60.0% | |
GTTCCTGGCCTGAAACGGTG+TGG | + | chr8.3:38668796-38668815 | None:intergenic | 60.0% | |
! | TGTGTCGGCGCTGCAAGAAG+CGG | - | chr8.3:38668945-38668964 | MS.gene038612:CDS | 60.0% |
!! | CAGCTTGCTAGGCGTATCCG+TGG | - | chr8.3:38669054-38669073 | MS.gene038612:CDS | 60.0% |
!! | CTTCCTTGGTGCTTTGCCGC+CGG | + | chr8.3:38668716-38668735 | None:intergenic | 60.0% |
AAATCTGCTCCGGCGACCGG+CGG | - | chr8.3:38668760-38668779 | MS.gene038612:CDS | 65.0% | |
CGCCGGAGCAGATTTCCGAG+CGG | + | chr8.3:38668755-38668774 | None:intergenic | 65.0% | |
CGGAAATCTGCTCCGGCGAC+CGG | - | chr8.3:38668757-38668776 | MS.gene038612:CDS | 65.0% | |
GCGGATCTCACGGAGTGCGA+CGG | + | chr8.3:38668818-38668837 | None:intergenic | 65.0% | |
TCACGGAGTGCGACGGTTCC+TGG | + | chr8.3:38668811-38668830 | None:intergenic | 65.0% | |
TTCTTCACTCCGCCGGTCGC+CGG | + | chr8.3:38668772-38668791 | None:intergenic | 65.0% | |
GTCGGCGCTGCAAGAAGCGG+CGG | - | chr8.3:38668948-38668967 | MS.gene038612:CDS | 70.0% | |
! | CCACCGGCGGCAAAGCACCA+AGG | - | chr8.3:38668710-38668729 | MS.gene038612:CDS | 70.0% |
!! | CCTTGGTGCTTTGCCGCCGG+TGG | + | chr8.3:38668713-38668732 | None:intergenic | 70.0% |
GGCGCTGCAAGAAGCGGCGG+AGG | - | chr8.3:38668951-38668970 | MS.gene038612:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 38668679 | 38669089 | 38668679 | ID=MS.gene038612 |
chr8.3 | mRNA | 38668679 | 38669089 | 38668679 | ID=MS.gene038612.t1;Parent=MS.gene038612 |
chr8.3 | exon | 38668679 | 38669089 | 38668679 | ID=MS.gene038612.t1.exon1;Parent=MS.gene038612.t1 |
chr8.3 | CDS | 38668679 | 38669089 | 38668679 | ID=cds.MS.gene038612.t1;Parent=MS.gene038612.t1 |
Gene Sequence |
Protein sequence |