Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91631.t1 | XP_004512510.2 | 100 | 136 | 0 | 0 | 1 | 136 | 104 | 239 | 5.80E-64 | 253.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91631.t1 | P68429 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.4e-66 | 253.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91631.t1 | A0A1S3TJX1 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.2e-64 | 253.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049622 | MS.gene91631 | 0.841673 | 4.12E-58 | -1.69E-46 |
MS.gene049989 | MS.gene91631 | 0.842844 | 2.02E-58 | -1.69E-46 |
MS.gene050297 | MS.gene91631 | 0.813492 | 2.49E-51 | -1.69E-46 |
MS.gene051629 | MS.gene91631 | 0.802087 | 6.62E-49 | -1.69E-46 |
MS.gene051955 | MS.gene91631 | 0.831325 | 1.78E-55 | -1.69E-46 |
MS.gene052367 | MS.gene91631 | 0.822022 | 2.96E-53 | -1.69E-46 |
MS.gene053416 | MS.gene91631 | 0.823684 | 1.21E-53 | -1.69E-46 |
MS.gene053417 | MS.gene91631 | 0.82654 | 2.56E-54 | -1.69E-46 |
MS.gene055308 | MS.gene91631 | 0.801247 | 9.85E-49 | -1.69E-46 |
MS.gene055578 | MS.gene91631 | 0.814629 | 1.40E-51 | -1.69E-46 |
MS.gene055957 | MS.gene91631 | 0.868795 | 5.01E-66 | -1.69E-46 |
MS.gene056041 | MS.gene91631 | 0.856747 | 2.61E-62 | -1.69E-46 |
MS.gene056042 | MS.gene91631 | 0.814102 | 1.83E-51 | -1.69E-46 |
MS.gene056335 | MS.gene91631 | 0.850571 | 1.56E-60 | -1.69E-46 |
MS.gene056526 | MS.gene91631 | 0.802385 | 5.75E-49 | -1.69E-46 |
MS.gene057458 | MS.gene91631 | 0.812459 | 4.20E-51 | -1.69E-46 |
MS.gene058196 | MS.gene91631 | 0.812159 | 4.88E-51 | -1.69E-46 |
MS.gene058197 | MS.gene91631 | 0.810477 | 1.13E-50 | -1.69E-46 |
MS.gene058198 | MS.gene91631 | 0.813879 | 2.05E-51 | -1.69E-46 |
MS.gene059300 | MS.gene91631 | 0.819646 | 1.04E-52 | -1.69E-46 |
MS.gene060473 | MS.gene91631 | 0.822417 | 2.39E-53 | -1.69E-46 |
MS.gene060565 | MS.gene91631 | 0.825567 | 4.37E-54 | -1.69E-46 |
MS.gene06057 | MS.gene91631 | 0.845163 | 4.82E-59 | -1.69E-46 |
MS.gene061099 | MS.gene91631 | 0.842041 | 3.29E-58 | -1.69E-46 |
MS.gene061260 | MS.gene91631 | 0.832698 | 8.15E-56 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91631.t1 | MTR_7g059070 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene91631.t1 | MTR_5g029820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene91631.t1 | MTR_5g029770 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene91631.t1 | MTR_4g065990 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene91631.t1 | MTR_4g088150 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene91631.t1 | MTR_2g035230 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene91631.t1 | MTR_8g092720 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene91631.t1 | MTR_8g063500 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene91631.t1 | MTR_8g103245 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene91631.t1 | MTR_8g092820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene91631.t1 | MTR_7g013610 | 100.000 | 136 | 0 | 0 | 1 | 136 | 100 | 235 | 1.10e-95 | 275 |
MS.gene91631.t1 | MTR_4g097175 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene91631.t1 | MTR_1g023630 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene91631.t1 | MTR_8g061940 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene91631.t1 | MTR_8g099430 | 96.324 | 136 | 5 | 0 | 1 | 136 | 1 | 136 | 1.38e-92 | 264 |
MS.gene91631.t1 | MTR_4g097170 | 96.324 | 136 | 5 | 0 | 1 | 136 | 42 | 177 | 2.29e-91 | 262 |
MS.gene91631.t1 | MTR_2g082310 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene91631.t1 | MTR_2g082340 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene91631.t1 | MTR_2g082370 | 85.616 | 146 | 11 | 1 | 1 | 136 | 1 | 146 | 1.74e-82 | 238 |
MS.gene91631.t1 | MTR_2g082400 | 84.559 | 136 | 19 | 2 | 1 | 135 | 1 | 135 | 6.38e-75 | 219 |
MS.gene91631.t1 | MTR_7g013600 | 86.607 | 112 | 15 | 0 | 25 | 136 | 2 | 113 | 1.01e-65 | 195 |
MS.gene91631.t1 | MTR_7g023830 | 67.164 | 134 | 43 | 1 | 1 | 134 | 1 | 133 | 6.48e-56 | 171 |
MS.gene91631.t1 | MTR_1g023630 | 73.504 | 117 | 15 | 3 | 1 | 111 | 1 | 107 | 3.81e-52 | 160 |
MS.gene91631.t1 | MTR_5g024630 | 67.241 | 116 | 35 | 2 | 1 | 116 | 1 | 113 | 1.63e-45 | 144 |
MS.gene91631.t1 | MTR_7g023880 | 58.647 | 133 | 41 | 3 | 3 | 134 | 18 | 137 | 5.46e-43 | 139 |
MS.gene91631.t1 | MTR_5g024530 | 68.182 | 110 | 12 | 2 | 19 | 128 | 68 | 154 | 4.56e-42 | 137 |
MS.gene91631.t1 | MTR_0197s0100 | 100.000 | 66 | 0 | 0 | 1 | 66 | 1 | 66 | 1.45e-40 | 132 |
MS.gene91631.t1 | MTR_8g027840 | 55.102 | 98 | 43 | 1 | 37 | 133 | 28 | 125 | 4.83e-30 | 105 |
MS.gene91631.t1 | MTR_8g105150 | 53.846 | 91 | 10 | 1 | 37 | 127 | 11 | 69 | 1.43e-25 | 92.4 |
MS.gene91631.t1 | MTR_8g092740 | 97.368 | 38 | 1 | 0 | 99 | 136 | 118 | 155 | 4.60e-20 | 80.9 |
MS.gene91631.t1 | MTR_5g089120 | 76.190 | 42 | 10 | 0 | 82 | 123 | 6 | 47 | 6.07e-18 | 73.6 |
MS.gene91631.t1 | MTR_5g024600 | 62.963 | 54 | 20 | 0 | 1 | 54 | 1 | 54 | 1.76e-15 | 66.2 |
MS.gene91631.t1 | MTR_4g128040 | 75.676 | 37 | 9 | 0 | 79 | 115 | 20 | 56 | 3.38e-15 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene91631.t1 | AT5G65360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene91631.t1 | AT5G10390 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene91631.t1 | AT5G10400 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene91631.t1 | AT3G27360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene91631.t1 | AT1G09200 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene91631.t1 | AT5G10980 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene91631.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene91631.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene91631.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene91631.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene91631.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene91631.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene91631.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 29 | 164 | 6.76e-93 | 266 |
MS.gene91631.t1 | AT5G65350 | 94.853 | 136 | 7 | 0 | 1 | 136 | 1 | 136 | 5.09e-91 | 260 |
MS.gene91631.t1 | AT1G75600 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 1.20e-89 | 256 |
MS.gene91631.t1 | AT1G13370 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 5.32e-89 | 254 |
MS.gene91631.t1 | AT1G19890 | 89.781 | 137 | 13 | 1 | 1 | 136 | 1 | 137 | 1.03e-83 | 241 |
MS.gene91631.t1 | AT5G12910 | 71.111 | 135 | 34 | 2 | 1 | 135 | 1 | 130 | 9.51e-67 | 198 |
MS.gene91631.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene91631.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene91631.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene91631.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
Find 29 sgRNAs with CRISPR-Local
Find 35 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCGCGCAATGCGACGGTTCC+TGG | 0.246474 | 7.4:-85491330 | None:intergenic |
CGATTTCACGAACCAATCTT+TGG | 0.247437 | 7.4:-85491404 | None:intergenic |
TTCTTCACTCCTCCGGTTGC+CGG | 0.280449 | 7.4:-85491291 | None:intergenic |
GAAACTTCCATTCCAAAGAT+TGG | 0.376853 | 7.4:+85491392 | MS.gene91631:CDS |
CTTGCAAGTTGAATATCCTT+AGG | 0.413826 | 7.4:-85491564 | None:intergenic |
AGAAAATCAGCTCCGGCAAC+CGG | 0.420148 | 7.4:+85491279 | MS.gene91631:CDS |
GCTGCTGAAGCGTATCTTGT+TGG | 0.422267 | 7.4:+85491486 | MS.gene91631:CDS |
GAGCAGAAACAGCACTGCTC+TGG | 0.422418 | 7.4:-85491455 | None:intergenic |
CTGCTGAAGCGTATCTTGTT+GGG | 0.422762 | 7.4:+85491487 | MS.gene91631:CDS |
AGAGCACCGAGCTTCTCATT+AGG | 0.438663 | 7.4:+85491370 | MS.gene91631:CDS |
TGGTGGCGAGTTGTTTCCGT+GGG | 0.469293 | 7.4:-85491248 | None:intergenic |
GTGTGGCTTCTTCACTCCTC+CGG | 0.469362 | 7.4:-85491298 | None:intergenic |
TCTGATTTCGCGCAATGCGA+CGG | 0.516040 | 7.4:-85491337 | None:intergenic |
GAGAGTTACTATTATGCCTA+AGG | 0.517685 | 7.4:+85491548 | MS.gene91631:CDS |
TCACGAACCAATCTTTGGAA+TGG | 0.535409 | 7.4:-85491399 | None:intergenic |
AGCCGCAAGAAAATCAGCTC+CGG | 0.539637 | 7.4:+85491272 | MS.gene91631:CDS |
AAGAAGAATCAGAGGCGAAA+GGG | 0.540261 | 7.4:+85491584 | MS.gene91631:CDS |
CAAGAAGAATCAGAGGCGAA+AGG | 0.575448 | 7.4:+85491583 | MS.gene91631:CDS |
TTGGTGGCGAGTTGTTTCCG+TGG | 0.577381 | 7.4:-85491249 | None:intergenic |
CAAACAGCAAGAAAATCCAC+CGG | 0.620184 | 7.4:+85491216 | MS.gene91631:CDS |
AAATCAGCTCCGGCAACCGG+AGG | 0.628601 | 7.4:+85491282 | MS.gene91631:CDS |
AAGTTTCCTAATGAGAAGCT+CGG | 0.631897 | 7.4:-85491376 | None:intergenic |
CCACCGGAGGAAAAGCCCCA+CGG | 0.631926 | 7.4:+85491232 | MS.gene91631:CDS |
AAGCCACACAGATTCCGTCC+AGG | 0.632383 | 7.4:+85491312 | MS.gene91631:CDS |
GCAATGCGACGGTTCCTGGA+CGG | 0.638461 | 7.4:-85491326 | None:intergenic |
CAACTTGCAAGAAGAATCAG+AGG | 0.660238 | 7.4:+85491576 | MS.gene91631:CDS |
GTTCCTGGACGGAATCTGTG+TGG | 0.669194 | 7.4:-85491315 | None:intergenic |
ACAGCAAGAAAATCCACCGG+AGG | 0.684797 | 7.4:+85491219 | MS.gene91631:CDS |
GGTGGCGAGTTGTTTCCGTG+GGG | 0.739791 | 7.4:-85491247 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
AAGTTTCCTAATGAGAAGCT+CGG | - | chr7.4:85491379-85491398 | None:intergenic | 35.0% | |
GAAACTTCCATTCCAAAGAT+TGG | + | chr7.4:85491392-85491411 | MS.gene91631:CDS | 35.0% | |
GAGAGTTACTATTATGCCTA+AGG | + | chr7.4:85491548-85491567 | MS.gene91631:CDS | 35.0% | |
! | CTTGCAAGTTGAATATCCTT+AGG | - | chr7.4:85491567-85491586 | None:intergenic | 35.0% |
!!! | GGATTTTCTTGCTGTTTGTT+TGG | - | chr7.4:85491214-85491233 | None:intergenic | 35.0% |
AAGAAGAATCAGAGGCGAAA+GGG | + | chr7.4:85491584-85491603 | MS.gene91631:CDS | 40.0% | |
CAAACAGCAAGAAAATCCAC+CGG | + | chr7.4:85491216-85491235 | MS.gene91631:CDS | 40.0% | |
CAACTTGCAAGAAGAATCAG+AGG | + | chr7.4:85491576-85491595 | MS.gene91631:CDS | 40.0% | |
CGATTTCACGAACCAATCTT+TGG | - | chr7.4:85491407-85491426 | None:intergenic | 40.0% | |
! | TCACGAACCAATCTTTGGAA+TGG | - | chr7.4:85491402-85491421 | None:intergenic | 40.0% |
CAAGAAGAATCAGAGGCGAA+AGG | + | chr7.4:85491583-85491602 | MS.gene91631:CDS | 45.0% | |
CTGCTGAAGCGTATCTTGTT+GGG | + | chr7.4:85491487-85491506 | MS.gene91631:CDS | 45.0% | |
!! | AGCTGATTTTCTTGCGGCTT+TGG | - | chr7.4:85491271-85491290 | None:intergenic | 45.0% |
!! | TGATTTTCTTGCGGCTTTGG+TGG | - | chr7.4:85491268-85491287 | None:intergenic | 45.0% |
ACAGCAAGAAAATCCACCGG+AGG | + | chr7.4:85491219-85491238 | MS.gene91631:CDS | 50.0% | |
AGAAAATCAGCTCCGGCAAC+CGG | + | chr7.4:85491279-85491298 | MS.gene91631:CDS | 50.0% | |
AGCCGCAAGAAAATCAGCTC+CGG | + | chr7.4:85491272-85491291 | MS.gene91631:CDS | 50.0% | |
GCTGCTGAAGCGTATCTTGT+TGG | + | chr7.4:85491486-85491505 | MS.gene91631:CDS | 50.0% | |
TCTGATTTCGCGCAATGCGA+CGG | - | chr7.4:85491340-85491359 | None:intergenic | 50.0% | |
!! | AGAGCACCGAGCTTCTCATT+AGG | + | chr7.4:85491370-85491389 | MS.gene91631:CDS | 50.0% |
!! | TGCCGGAGCTGATTTTCTTG+CGG | - | chr7.4:85491277-85491296 | None:intergenic | 50.0% |
AAGCCACACAGATTCCGTCC+AGG | + | chr7.4:85491312-85491331 | MS.gene91631:CDS | 55.0% | |
GAGCAGAAACAGCACTGCTC+TGG | - | chr7.4:85491458-85491477 | None:intergenic | 55.0% | |
GTGTGGCTTCTTCACTCCTC+CGG | - | chr7.4:85491301-85491320 | None:intergenic | 55.0% | |
GTTCCTGGACGGAATCTGTG+TGG | - | chr7.4:85491318-85491337 | None:intergenic | 55.0% | |
TTCTTCACTCCTCCGGTTGC+CGG | - | chr7.4:85491294-85491313 | None:intergenic | 55.0% | |
! | TGGTGGCGAGTTGTTTCCGT+GGG | - | chr7.4:85491251-85491270 | None:intergenic | 55.0% |
! | TTTCCGTGGGGCTTTTCCTC+CGG | - | chr7.4:85491238-85491257 | None:intergenic | 55.0% |
!! | TTGGTGGCGAGTTGTTTCCG+TGG | - | chr7.4:85491252-85491271 | None:intergenic | 55.0% |
AAATCAGCTCCGGCAACCGG+AGG | + | chr7.4:85491282-85491301 | MS.gene91631:CDS | 60.0% | |
GCAATGCGACGGTTCCTGGA+CGG | - | chr7.4:85491329-85491348 | None:intergenic | 60.0% | |
! | GGTGGCGAGTTGTTTCCGTG+GGG | - | chr7.4:85491250-85491269 | None:intergenic | 60.0% |
CCACCGGAGGAAAAGCCCCA+CGG | + | chr7.4:85491232-85491251 | MS.gene91631:CDS | 65.0% | |
TCGCGCAATGCGACGGTTCC+TGG | - | chr7.4:85491333-85491352 | None:intergenic | 65.0% | |
! | CCGTGGGGCTTTTCCTCCGG+TGG | - | chr7.4:85491235-85491254 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 85491201 | 85491611 | 85491201 | ID=MS.gene91631 |
chr7.4 | mRNA | 85491201 | 85491611 | 85491201 | ID=MS.gene91631.t1;Parent=MS.gene91631 |
chr7.4 | exon | 85491201 | 85491611 | 85491201 | ID=MS.gene91631.t1.exon1;Parent=MS.gene91631.t1 |
chr7.4 | CDS | 85491201 | 85491611 | 85491201 | ID=cds.MS.gene91631.t1;Parent=MS.gene91631.t1 |
Gene Sequence |
Protein sequence |