Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00233.t1 | XP_004512510.2 | 100 | 136 | 0 | 0 | 1 | 136 | 104 | 239 | 5.80E-64 | 253.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00233.t1 | P68429 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.4e-66 | 253.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00233.t1 | A0A1S3TJX1 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.2e-64 | 253.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00233.t1 | MTR_7g059070 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene00233.t1 | MTR_5g029820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene00233.t1 | MTR_5g029770 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene00233.t1 | MTR_4g065990 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene00233.t1 | MTR_4g088150 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene00233.t1 | MTR_2g035230 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene00233.t1 | MTR_8g092720 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene00233.t1 | MTR_8g063500 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene00233.t1 | MTR_8g103245 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene00233.t1 | MTR_8g092820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene00233.t1 | MTR_7g013610 | 100.000 | 136 | 0 | 0 | 1 | 136 | 100 | 235 | 1.10e-95 | 275 |
MS.gene00233.t1 | MTR_4g097175 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene00233.t1 | MTR_1g023630 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene00233.t1 | MTR_8g061940 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene00233.t1 | MTR_8g099430 | 96.324 | 136 | 5 | 0 | 1 | 136 | 1 | 136 | 1.38e-92 | 264 |
MS.gene00233.t1 | MTR_4g097170 | 96.324 | 136 | 5 | 0 | 1 | 136 | 42 | 177 | 2.29e-91 | 262 |
MS.gene00233.t1 | MTR_2g082310 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene00233.t1 | MTR_2g082340 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene00233.t1 | MTR_2g082370 | 85.616 | 146 | 11 | 1 | 1 | 136 | 1 | 146 | 1.74e-82 | 238 |
MS.gene00233.t1 | MTR_2g082400 | 84.559 | 136 | 19 | 2 | 1 | 135 | 1 | 135 | 6.38e-75 | 219 |
MS.gene00233.t1 | MTR_7g013600 | 86.607 | 112 | 15 | 0 | 25 | 136 | 2 | 113 | 1.01e-65 | 195 |
MS.gene00233.t1 | MTR_7g023830 | 67.164 | 134 | 43 | 1 | 1 | 134 | 1 | 133 | 6.48e-56 | 171 |
MS.gene00233.t1 | MTR_1g023630 | 73.504 | 117 | 15 | 3 | 1 | 111 | 1 | 107 | 3.81e-52 | 160 |
MS.gene00233.t1 | MTR_5g024630 | 67.241 | 116 | 35 | 2 | 1 | 116 | 1 | 113 | 1.63e-45 | 144 |
MS.gene00233.t1 | MTR_7g023880 | 58.647 | 133 | 41 | 3 | 3 | 134 | 18 | 137 | 5.46e-43 | 139 |
MS.gene00233.t1 | MTR_5g024530 | 68.182 | 110 | 12 | 2 | 19 | 128 | 68 | 154 | 4.56e-42 | 137 |
MS.gene00233.t1 | MTR_0197s0100 | 100.000 | 66 | 0 | 0 | 1 | 66 | 1 | 66 | 1.45e-40 | 132 |
MS.gene00233.t1 | MTR_8g027840 | 55.102 | 98 | 43 | 1 | 37 | 133 | 28 | 125 | 4.83e-30 | 105 |
MS.gene00233.t1 | MTR_8g105150 | 53.846 | 91 | 10 | 1 | 37 | 127 | 11 | 69 | 1.43e-25 | 92.4 |
MS.gene00233.t1 | MTR_8g092740 | 97.368 | 38 | 1 | 0 | 99 | 136 | 118 | 155 | 4.60e-20 | 80.9 |
MS.gene00233.t1 | MTR_5g089120 | 76.190 | 42 | 10 | 0 | 82 | 123 | 6 | 47 | 6.07e-18 | 73.6 |
MS.gene00233.t1 | MTR_5g024600 | 62.963 | 54 | 20 | 0 | 1 | 54 | 1 | 54 | 1.76e-15 | 66.2 |
MS.gene00233.t1 | MTR_4g128040 | 75.676 | 37 | 9 | 0 | 79 | 115 | 20 | 56 | 3.38e-15 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene00233.t1 | AT5G65360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene00233.t1 | AT5G10390 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene00233.t1 | AT5G10400 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene00233.t1 | AT3G27360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene00233.t1 | AT1G09200 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene00233.t1 | AT5G10980 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene00233.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene00233.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene00233.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene00233.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene00233.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene00233.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene00233.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 29 | 164 | 6.76e-93 | 266 |
MS.gene00233.t1 | AT5G65350 | 94.853 | 136 | 7 | 0 | 1 | 136 | 1 | 136 | 5.09e-91 | 260 |
MS.gene00233.t1 | AT1G75600 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 1.20e-89 | 256 |
MS.gene00233.t1 | AT1G13370 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 5.32e-89 | 254 |
MS.gene00233.t1 | AT1G19890 | 89.781 | 137 | 13 | 1 | 1 | 136 | 1 | 137 | 1.03e-83 | 241 |
MS.gene00233.t1 | AT5G12910 | 71.111 | 135 | 34 | 2 | 1 | 135 | 1 | 130 | 9.51e-67 | 198 |
MS.gene00233.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene00233.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene00233.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene00233.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
Find 38 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGTCGCCGGAGCAGATTTC+CGG | 0.251839 | 2.1:+57576506 | None:intergenic |
TGAGAAGCTCAGTGCTCTTC+TGG | 0.304985 | 2.1:+57576419 | None:intergenic |
TCACGAAGTGCGACGGTTCC+TGG | 0.318785 | 2.1:+57576454 | None:intergenic |
GCTGCTGAAGCTTATCTTGT+TGG | 0.357332 | 2.1:-57576298 | MS.gene00233:CDS |
GAAGCTTCCATTTCAAAGAT+TGG | 0.365481 | 2.1:-57576392 | MS.gene00233:CDS |
TCTCGAACCAATCTTTGAAA+TGG | 0.396886 | 2.1:+57576385 | None:intergenic |
TGTCGCCGGAGCAGATTTCC+GGG | 0.400441 | 2.1:+57576507 | None:intergenic |
CGGAAATCTGCTCCGGCGAC+AGG | 0.416360 | 2.1:-57576505 | MS.gene00233:CDS |
GGATTTGCGGGCTGTTTGTT+TGG | 0.425629 | 2.1:+57576573 | None:intergenic |
TTGTGGCGAGCTGTTTGCGT+GGG | 0.426078 | 2.1:+57576536 | None:intergenic |
TTCTTCACTCCTCCTGTCGC+CGG | 0.451049 | 2.1:+57576493 | None:intergenic |
GAGCAGAAACAGCACTACTC+TGG | 0.498444 | 2.1:+57576329 | None:intergenic |
AAGCCCCACCGTTTCCGTCC+AGG | 0.502650 | 2.1:-57576472 | MS.gene00233:CDS |
CGACGGTTCCTGGACGGAAA+CGG | 0.511490 | 2.1:+57576464 | None:intergenic |
TTGTGCTATTCATGCTAAGA+GGG | 0.513784 | 2.1:-57576254 | MS.gene00233:CDS |
GGTTCCTGGACGGAAACGGT+GGG | 0.514668 | 2.1:+57576468 | None:intergenic |
CAAACAGCCCGCAAATCCAC+CGG | 0.524480 | 2.1:-57576568 | MS.gene00233:CDS |
AGCTGCCCGGAAATCTGCTC+CGG | 0.529187 | 2.1:-57576512 | MS.gene00233:CDS |
AGAGCACTGAGCTTCTCATA+AGG | 0.531497 | 2.1:-57576414 | MS.gene00233:CDS |
CGGTTCCTGGACGGAAACGG+TGG | 0.532129 | 2.1:+57576467 | None:intergenic |
AAACAGCACTACTCTGGAAA+CGG | 0.532210 | 2.1:+57576335 | None:intergenic |
GAGGGTTACTATTATGCCTA+AGG | 0.533362 | 2.1:-57576236 | MS.gene00233:CDS |
CTCGCAAGCTGAATATCCTT+AGG | 0.533935 | 2.1:+57576220 | None:intergenic |
TTTGTGCTATTCATGCTAAG+AGG | 0.537531 | 2.1:-57576255 | MS.gene00233:CDS |
AGCTCGCCACAAAAGCTGCC+CGG | 0.549986 | 2.1:-57576525 | MS.gene00233:CDS |
CAGTGCTCTTCTGGTACTTG+CGG | 0.559165 | 2.1:+57576428 | None:intergenic |
GAGAAGAATCAGAGGCGAAA+GGG | 0.568256 | 2.1:-57576200 | MS.gene00233:CDS |
TTTGTGGCGAGCTGTTTGCG+TGG | 0.574422 | 2.1:+57576535 | None:intergenic |
CGAGAAGAATCAGAGGCGAA+AGG | 0.575054 | 2.1:-57576201 | MS.gene00233:CDS |
AATCGCTCAGGATTTCAAAA+CGG | 0.576806 | 2.1:-57576362 | MS.gene00233:CDS |
TGTGGCGAGCTGTTTGCGTG+GGG | 0.596011 | 2.1:+57576537 | None:intergenic |
GCGGATTTCACGAAGTGCGA+CGG | 0.598942 | 2.1:+57576447 | None:intergenic |
GTTCCTGGACGGAAACGGTG+GGG | 0.599384 | 2.1:+57576469 | None:intergenic |
AAATCTGCTCCGGCGACAGG+AGG | 0.602026 | 2.1:-57576502 | MS.gene00233:CDS |
ATTGGTTCGAGAAATCGCTC+AGG | 0.615789 | 2.1:-57576374 | MS.gene00233:CDS |
GAAGTGCGACGGTTCCTGGA+CGG | 0.655834 | 2.1:+57576458 | None:intergenic |
ACAGCCCGCAAATCCACCGG+CGG | 0.662314 | 2.1:-57576565 | MS.gene00233:CDS |
CAGCTTGCGAGAAGAATCAG+AGG | 0.668283 | 2.1:-57576208 | MS.gene00233:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
AATCGCTCAGGATTTCAAAA+CGG | - | chr2.1:57576416-57576435 | MS.gene00233:CDS | 35.0% | |
GAAGCTTCCATTTCAAAGAT+TGG | - | chr2.1:57576386-57576405 | MS.gene00233:CDS | 35.0% | |
! | TCTCGAACCAATCTTTGAAA+TGG | + | chr2.1:57576396-57576415 | None:intergenic | 35.0% |
! | TTGTGCTATTCATGCTAAGA+GGG | - | chr2.1:57576524-57576543 | MS.gene00233:CDS | 35.0% |
! | TTTGTGCTATTCATGCTAAG+AGG | - | chr2.1:57576523-57576542 | MS.gene00233:CDS | 35.0% |
GAGGGTTACTATTATGCCTA+AGG | - | chr2.1:57576542-57576561 | MS.gene00233:CDS | 40.0% | |
! | AAACAGCACTACTCTGGAAA+CGG | + | chr2.1:57576446-57576465 | None:intergenic | 40.0% |
CTCGCAAGCTGAATATCCTT+AGG | + | chr2.1:57576561-57576580 | None:intergenic | 45.0% | |
GAGAAGAATCAGAGGCGAAA+GGG | - | chr2.1:57576578-57576597 | MS.gene00233:CDS | 45.0% | |
GCTGCTGAAGCTTATCTTGT+TGG | - | chr2.1:57576480-57576499 | MS.gene00233:CDS | 45.0% | |
!! | AGAGCACTGAGCTTCTCATA+AGG | - | chr2.1:57576364-57576383 | MS.gene00233:CDS | 45.0% |
!! | ATTGGTTCGAGAAATCGCTC+AGG | - | chr2.1:57576404-57576423 | MS.gene00233:CDS | 45.0% |
CAGCTTGCGAGAAGAATCAG+AGG | - | chr2.1:57576570-57576589 | MS.gene00233:CDS | 50.0% | |
CAGTGCTCTTCTGGTACTTG+CGG | + | chr2.1:57576353-57576372 | None:intergenic | 50.0% | |
CGAGAAGAATCAGAGGCGAA+AGG | - | chr2.1:57576577-57576596 | MS.gene00233:CDS | 50.0% | |
GAGCAGAAACAGCACTACTC+TGG | + | chr2.1:57576452-57576471 | None:intergenic | 50.0% | |
TGAGAAGCTCAGTGCTCTTC+TGG | + | chr2.1:57576362-57576381 | None:intergenic | 50.0% | |
! | AGATTTCCGGGCAGCTTTTG+TGG | + | chr2.1:57576262-57576281 | None:intergenic | 50.0% |
! | GGATTTGCGGGCTGTTTGTT+TGG | + | chr2.1:57576208-57576227 | None:intergenic | 50.0% |
CAAACAGCCCGCAAATCCAC+CGG | - | chr2.1:57576210-57576229 | MS.gene00233:CDS | 55.0% | |
GCGGATTTCACGAAGTGCGA+CGG | + | chr2.1:57576334-57576353 | None:intergenic | 55.0% | |
TTCTTCACTCCTCCTGTCGC+CGG | + | chr2.1:57576288-57576307 | None:intergenic | 55.0% | |
TTGTGGCGAGCTGTTTGCGT+GGG | + | chr2.1:57576245-57576264 | None:intergenic | 55.0% | |
TTTGTGGCGAGCTGTTTGCG+TGG | + | chr2.1:57576246-57576265 | None:intergenic | 55.0% | |
!! | CTTTTCCGCCGGTGGATTTG+CGG | + | chr2.1:57576221-57576240 | None:intergenic | 55.0% |
!! | TTTTCCGCCGGTGGATTTGC+GGG | + | chr2.1:57576220-57576239 | None:intergenic | 55.0% |
AAATCTGCTCCGGCGACAGG+AGG | - | chr2.1:57576276-57576295 | MS.gene00233:CDS | 60.0% | |
AGCTCGCCACAAAAGCTGCC+CGG | - | chr2.1:57576253-57576272 | MS.gene00233:CDS | 60.0% | |
AGCTGCCCGGAAATCTGCTC+CGG | - | chr2.1:57576266-57576285 | MS.gene00233:CDS | 60.0% | |
CGACGGTTCCTGGACGGAAA+CGG | + | chr2.1:57576317-57576336 | None:intergenic | 60.0% | |
CTGTCGCCGGAGCAGATTTC+CGG | + | chr2.1:57576275-57576294 | None:intergenic | 60.0% | |
GAAGTGCGACGGTTCCTGGA+CGG | + | chr2.1:57576323-57576342 | None:intergenic | 60.0% | |
GGTTCCTGGACGGAAACGGT+GGG | + | chr2.1:57576313-57576332 | None:intergenic | 60.0% | |
GTTCCTGGACGGAAACGGTG+GGG | + | chr2.1:57576312-57576331 | None:intergenic | 60.0% | |
TCACGAAGTGCGACGGTTCC+TGG | + | chr2.1:57576327-57576346 | None:intergenic | 60.0% | |
TGTCGCCGGAGCAGATTTCC+GGG | + | chr2.1:57576274-57576293 | None:intergenic | 60.0% | |
TGTGGCGAGCTGTTTGCGTG+GGG | + | chr2.1:57576244-57576263 | None:intergenic | 60.0% | |
! | TTTGCGTGGGGCTTTTCCGC+CGG | + | chr2.1:57576232-57576251 | None:intergenic | 60.0% |
AAGCCCCACCGTTTCCGTCC+AGG | - | chr2.1:57576306-57576325 | MS.gene00233:CDS | 65.0% | |
ACAGCCCGCAAATCCACCGG+CGG | - | chr2.1:57576213-57576232 | MS.gene00233:CDS | 65.0% | |
CGGAAATCTGCTCCGGCGAC+AGG | - | chr2.1:57576273-57576292 | MS.gene00233:CDS | 65.0% | |
CGGTTCCTGGACGGAAACGG+TGG | + | chr2.1:57576314-57576333 | None:intergenic | 65.0% | |
! | GCGTGGGGCTTTTCCGCCGG+TGG | + | chr2.1:57576229-57576248 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 57576195 | 57576605 | 57576195 | ID=MS.gene00233 |
chr2.1 | mRNA | 57576195 | 57576605 | 57576195 | ID=MS.gene00233.t1;Parent=MS.gene00233 |
chr2.1 | exon | 57576195 | 57576605 | 57576195 | ID=MS.gene00233.t1.exon1;Parent=MS.gene00233.t1 |
chr2.1 | CDS | 57576195 | 57576605 | 57576195 | ID=cds.MS.gene00233.t1;Parent=MS.gene00233.t1 |
Gene Sequence |
Protein sequence |