Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene05905.t1 | XP_004512510.2 | 100 | 136 | 0 | 0 | 1 | 136 | 104 | 239 | 5.80E-64 | 253.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene05905.t1 | P68429 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.4e-66 | 253.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene05905.t1 | A0A1S3TJX1 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.2e-64 | 253.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene05905.t1 | MTR_7g059070 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene05905.t1 | MTR_5g029820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene05905.t1 | MTR_5g029770 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene05905.t1 | MTR_4g065990 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene05905.t1 | MTR_4g088150 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene05905.t1 | MTR_2g035230 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene05905.t1 | MTR_8g092720 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene05905.t1 | MTR_8g063500 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene05905.t1 | MTR_8g103245 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene05905.t1 | MTR_8g092820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene05905.t1 | MTR_7g013610 | 100.000 | 136 | 0 | 0 | 1 | 136 | 100 | 235 | 1.10e-95 | 275 |
MS.gene05905.t1 | MTR_4g097175 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene05905.t1 | MTR_1g023630 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene05905.t1 | MTR_8g061940 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene05905.t1 | MTR_8g099430 | 96.324 | 136 | 5 | 0 | 1 | 136 | 1 | 136 | 1.38e-92 | 264 |
MS.gene05905.t1 | MTR_4g097170 | 96.324 | 136 | 5 | 0 | 1 | 136 | 42 | 177 | 2.29e-91 | 262 |
MS.gene05905.t1 | MTR_2g082310 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene05905.t1 | MTR_2g082340 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene05905.t1 | MTR_2g082370 | 85.616 | 146 | 11 | 1 | 1 | 136 | 1 | 146 | 1.74e-82 | 238 |
MS.gene05905.t1 | MTR_2g082400 | 84.559 | 136 | 19 | 2 | 1 | 135 | 1 | 135 | 6.38e-75 | 219 |
MS.gene05905.t1 | MTR_7g013600 | 86.607 | 112 | 15 | 0 | 25 | 136 | 2 | 113 | 1.01e-65 | 195 |
MS.gene05905.t1 | MTR_7g023830 | 67.164 | 134 | 43 | 1 | 1 | 134 | 1 | 133 | 6.48e-56 | 171 |
MS.gene05905.t1 | MTR_1g023630 | 73.504 | 117 | 15 | 3 | 1 | 111 | 1 | 107 | 3.81e-52 | 160 |
MS.gene05905.t1 | MTR_5g024630 | 67.241 | 116 | 35 | 2 | 1 | 116 | 1 | 113 | 1.63e-45 | 144 |
MS.gene05905.t1 | MTR_7g023880 | 58.647 | 133 | 41 | 3 | 3 | 134 | 18 | 137 | 5.46e-43 | 139 |
MS.gene05905.t1 | MTR_5g024530 | 68.182 | 110 | 12 | 2 | 19 | 128 | 68 | 154 | 4.56e-42 | 137 |
MS.gene05905.t1 | MTR_0197s0100 | 100.000 | 66 | 0 | 0 | 1 | 66 | 1 | 66 | 1.45e-40 | 132 |
MS.gene05905.t1 | MTR_8g027840 | 55.102 | 98 | 43 | 1 | 37 | 133 | 28 | 125 | 4.83e-30 | 105 |
MS.gene05905.t1 | MTR_8g105150 | 53.846 | 91 | 10 | 1 | 37 | 127 | 11 | 69 | 1.43e-25 | 92.4 |
MS.gene05905.t1 | MTR_8g092740 | 97.368 | 38 | 1 | 0 | 99 | 136 | 118 | 155 | 4.60e-20 | 80.9 |
MS.gene05905.t1 | MTR_5g089120 | 76.190 | 42 | 10 | 0 | 82 | 123 | 6 | 47 | 6.07e-18 | 73.6 |
MS.gene05905.t1 | MTR_5g024600 | 62.963 | 54 | 20 | 0 | 1 | 54 | 1 | 54 | 1.76e-15 | 66.2 |
MS.gene05905.t1 | MTR_4g128040 | 75.676 | 37 | 9 | 0 | 79 | 115 | 20 | 56 | 3.38e-15 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene05905.t1 | AT5G65360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene05905.t1 | AT5G10390 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene05905.t1 | AT5G10400 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene05905.t1 | AT3G27360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene05905.t1 | AT1G09200 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene05905.t1 | AT5G10980 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene05905.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene05905.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene05905.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene05905.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene05905.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene05905.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene05905.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 29 | 164 | 6.76e-93 | 266 |
MS.gene05905.t1 | AT5G65350 | 94.853 | 136 | 7 | 0 | 1 | 136 | 1 | 136 | 5.09e-91 | 260 |
MS.gene05905.t1 | AT1G75600 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 1.20e-89 | 256 |
MS.gene05905.t1 | AT1G13370 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 5.32e-89 | 254 |
MS.gene05905.t1 | AT1G19890 | 89.781 | 137 | 13 | 1 | 1 | 136 | 1 | 137 | 1.03e-83 | 241 |
MS.gene05905.t1 | AT5G12910 | 71.111 | 135 | 34 | 2 | 1 | 135 | 1 | 130 | 9.51e-67 | 198 |
MS.gene05905.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene05905.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene05905.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene05905.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
Find 39 sgRNAs with CRISPR-Local
Find 39 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGATTTCTCTAACCAATCTT+TGG | 0.224743 | 4.4:-3129964 | None:intergenic |
GCCGCTGAAGCTTATCTTGT+TGG | 0.348800 | 4.4:+3130046 | MS.gene05905:CDS |
TTGAATATCCTTAGGCATAA+TGG | 0.349539 | 4.4:-3130116 | None:intergenic |
AGCTGATTTCCGAGCGGCTT+TGG | 0.355177 | 4.4:-3129828 | None:intergenic |
TTCTTCACTCCTCCGGTGGC+TGG | 0.371943 | 4.4:-3129851 | None:intergenic |
TCACGAAGAGCAACAGTTCC+AGG | 0.402245 | 4.4:-3129890 | None:intergenic |
GAAGCTTCCATTCCAAAGAT+TGG | 0.412914 | 4.4:+3129952 | MS.gene05905:CDS |
CTTGCAAGTTGAATATCCTT+AGG | 0.413826 | 4.4:-3130124 | None:intergenic |
AGGATTTCAAAACTGATCTC+AGG | 0.429009 | 4.4:+3129990 | MS.gene05905:CDS |
GGATTTGCGAGCGGTTTGTT+TGG | 0.441284 | 4.4:-3129771 | None:intergenic |
AGAGCACTGAGCTTCTCATC+AGG | 0.458709 | 4.4:+3129930 | MS.gene05905:CDS |
TTGGTGGCGAGTTGTTTCCT+TGG | 0.473034 | 4.4:-3129809 | None:intergenic |
GGCTTCTTGAAGAGCAGAAA+CGG | 0.474881 | 4.4:-3130026 | None:intergenic |
TTTCCTTGGAGCTTTGCCTC+CGG | 0.476973 | 4.4:-3129795 | None:intergenic |
CCTTGGAGCTTTGCCTCCGG+TGG | 0.489182 | 4.4:-3129792 | None:intergenic |
TGATTTCCGAGCGGCTTTGG+TGG | 0.495094 | 4.4:-3129825 | None:intergenic |
GTGTGGCTTCTTCACTCCTC+CGG | 0.509508 | 4.4:-3129858 | None:intergenic |
TCTCTAACCAATCTTTGGAA+TGG | 0.520211 | 4.4:-3129959 | None:intergenic |
CGGAAATCAGCTCCAGCCAC+CGG | 0.530295 | 4.4:+3129839 | MS.gene05905:CDS |
GAGAGTTACCATTATGCCTA+AGG | 0.535535 | 4.4:+3130108 | MS.gene05905:CDS |
AACTCGCCACCAAAGCCGCT+CGG | 0.570459 | 4.4:+3129819 | MS.gene05905:CDS |
CCACCGGAGGCAAAGCTCCA+AGG | 0.572363 | 4.4:+3129792 | MS.gene05905:CDS |
CAGTGCTCTTCTGATACTTG+CGG | 0.590815 | 4.4:-3129916 | None:intergenic |
AAGAAGAATCAGAGGCGAGA+GGG | 0.597241 | 4.4:+3130144 | MS.gene05905:CDS |
ATTGGTTAGAGAAATCGCTC+AGG | 0.600201 | 4.4:+3129970 | MS.gene05905:CDS |
AGCATGAATAGCGCAAAGGT+TGG | 0.613099 | 4.4:-3130083 | None:intergenic |
AAGCCACACAGATTCCGTCC+TGG | 0.622196 | 4.4:+3129872 | MS.gene05905:CDS |
CAAACCGCTCGCAAATCCAC+CGG | 0.629023 | 4.4:+3129776 | MS.gene05905:CDS |
TGGCTTCTTCACTCCTCCGG+TGG | 0.631443 | 4.4:-3129855 | None:intergenic |
AAATCAGCTCCAGCCACCGG+AGG | 0.637716 | 4.4:+3129842 | MS.gene05905:CDS |
GCCTCCGGTGGATTTGCGAG+CGG | 0.639769 | 4.4:-3129780 | None:intergenic |
ACCGCTCGCAAATCCACCGG+AGG | 0.648108 | 4.4:+3129779 | MS.gene05905:CDS |
CAAGAAGAATCAGAGGCGAG+AGG | 0.648850 | 4.4:+3130143 | MS.gene05905:CDS |
TCTTAGCATGAATAGCGCAA+AGG | 0.658330 | 4.4:-3130087 | None:intergenic |
CAACTTGCAAGAAGAATCAG+AGG | 0.660238 | 4.4:+3130136 | MS.gene05905:CDS |
ACCAACAAGATAAGCTTCAG+CGG | 0.667251 | 4.4:-3130047 | None:intergenic |
GAAGAGCAACAGTTCCAGGA+CGG | 0.681197 | 4.4:-3129886 | None:intergenic |
GTTCCAGGACGGAATCTGTG+TGG | 0.699556 | 4.4:-3129875 | None:intergenic |
GGCTGGAGCTGATTTCCGAG+CGG | 0.733993 | 4.4:-3129834 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
TTGAATATCCTTAGGCATAA+TGG | - | chr4.4:3130119-3130138 | None:intergenic | 30.0% | |
AGGATTTCAAAACTGATCTC+AGG | + | chr4.4:3129990-3130009 | MS.gene05905:CDS | 35.0% | |
CGATTTCTCTAACCAATCTT+TGG | - | chr4.4:3129967-3129986 | None:intergenic | 35.0% | |
! | CTTGCAAGTTGAATATCCTT+AGG | - | chr4.4:3130127-3130146 | None:intergenic | 35.0% |
! | TCTCTAACCAATCTTTGGAA+TGG | - | chr4.4:3129962-3129981 | None:intergenic | 35.0% |
ACCAACAAGATAAGCTTCAG+CGG | - | chr4.4:3130050-3130069 | None:intergenic | 40.0% | |
ATTGGTTAGAGAAATCGCTC+AGG | + | chr4.4:3129970-3129989 | MS.gene05905:CDS | 40.0% | |
CAACTTGCAAGAAGAATCAG+AGG | + | chr4.4:3130136-3130155 | MS.gene05905:CDS | 40.0% | |
GAAGCTTCCATTCCAAAGAT+TGG | + | chr4.4:3129952-3129971 | MS.gene05905:CDS | 40.0% | |
GAGAGTTACCATTATGCCTA+AGG | + | chr4.4:3130108-3130127 | MS.gene05905:CDS | 40.0% | |
TCTTAGCATGAATAGCGCAA+AGG | - | chr4.4:3130090-3130109 | None:intergenic | 40.0% | |
AAGAAGAATCAGAGGCGAGA+GGG | + | chr4.4:3130144-3130163 | MS.gene05905:CDS | 45.0% | |
AGCATGAATAGCGCAAAGGT+TGG | - | chr4.4:3130086-3130105 | None:intergenic | 45.0% | |
CAGTGCTCTTCTGATACTTG+CGG | - | chr4.4:3129919-3129938 | None:intergenic | 45.0% | |
GGCTTCTTGAAGAGCAGAAA+CGG | - | chr4.4:3130029-3130048 | None:intergenic | 45.0% | |
CAAGAAGAATCAGAGGCGAG+AGG | + | chr4.4:3130143-3130162 | MS.gene05905:CDS | 50.0% | |
GAAGAGCAACAGTTCCAGGA+CGG | - | chr4.4:3129889-3129908 | None:intergenic | 50.0% | |
GCCGCTGAAGCTTATCTTGT+TGG | + | chr4.4:3130046-3130065 | MS.gene05905:CDS | 50.0% | |
TCACGAAGAGCAACAGTTCC+AGG | - | chr4.4:3129893-3129912 | None:intergenic | 50.0% | |
TTTCCTTGGAGCTTTGCCTC+CGG | - | chr4.4:3129798-3129817 | None:intergenic | 50.0% | |
! | GGATTTGCGAGCGGTTTGTT+TGG | - | chr4.4:3129774-3129793 | None:intergenic | 50.0% |
!! | AGAGCACTGAGCTTCTCATC+AGG | + | chr4.4:3129930-3129949 | MS.gene05905:CDS | 50.0% |
!! | TTGGTGGCGAGTTGTTTCCT+TGG | - | chr4.4:3129812-3129831 | None:intergenic | 50.0% |
AAGCCACACAGATTCCGTCC+TGG | + | chr4.4:3129872-3129891 | MS.gene05905:CDS | 55.0% | |
CAAACCGCTCGCAAATCCAC+CGG | + | chr4.4:3129776-3129795 | MS.gene05905:CDS | 55.0% | |
GTGTGGCTTCTTCACTCCTC+CGG | - | chr4.4:3129861-3129880 | None:intergenic | 55.0% | |
GTTCCAGGACGGAATCTGTG+TGG | - | chr4.4:3129878-3129897 | None:intergenic | 55.0% | |
! | AGCTGATTTCCGAGCGGCTT+TGG | - | chr4.4:3129831-3129850 | None:intergenic | 55.0% |
! | TGATTTCCGAGCGGCTTTGG+TGG | - | chr4.4:3129828-3129847 | None:intergenic | 55.0% |
AAATCAGCTCCAGCCACCGG+AGG | + | chr4.4:3129842-3129861 | MS.gene05905:CDS | 60.0% | |
AACTCGCCACCAAAGCCGCT+CGG | + | chr4.4:3129819-3129838 | MS.gene05905:CDS | 60.0% | |
CGGAAATCAGCTCCAGCCAC+CGG | + | chr4.4:3129839-3129858 | MS.gene05905:CDS | 60.0% | |
TGGCTTCTTCACTCCTCCGG+TGG | - | chr4.4:3129858-3129877 | None:intergenic | 60.0% | |
TTCTTCACTCCTCCGGTGGC+TGG | - | chr4.4:3129854-3129873 | None:intergenic | 60.0% | |
! | GGCTGGAGCTGATTTCCGAG+CGG | - | chr4.4:3129837-3129856 | None:intergenic | 60.0% |
ACCGCTCGCAAATCCACCGG+AGG | + | chr4.4:3129779-3129798 | MS.gene05905:CDS | 65.0% | |
CCACCGGAGGCAAAGCTCCA+AGG | + | chr4.4:3129792-3129811 | MS.gene05905:CDS | 65.0% | |
CCTTGGAGCTTTGCCTCCGG+TGG | - | chr4.4:3129795-3129814 | None:intergenic | 65.0% | |
! | GCCTCCGGTGGATTTGCGAG+CGG | - | chr4.4:3129783-3129802 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 3129761 | 3130171 | 3129761 | ID=MS.gene05905 |
chr4.4 | mRNA | 3129761 | 3130171 | 3129761 | ID=MS.gene05905.t1;Parent=MS.gene05905 |
chr4.4 | exon | 3129761 | 3130171 | 3129761 | ID=MS.gene05905.t1.exon1;Parent=MS.gene05905.t1 |
chr4.4 | CDS | 3129761 | 3130171 | 3129761 | ID=cds.MS.gene05905.t1;Parent=MS.gene05905.t1 |
Gene Sequence |
Protein sequence |