Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89203.t1 | XP_004512510.2 | 100 | 136 | 0 | 0 | 1 | 136 | 104 | 239 | 5.80E-64 | 253.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89203.t1 | P68429 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.4e-66 | 253.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89203.t1 | A0A1S3TJX1 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.2e-64 | 253.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene04985 | MS.gene89203 | 0.800741 | 1.25E-48 | -1.69E-46 |
MS.gene052367 | MS.gene89203 | 0.802948 | 4.40E-49 | -1.69E-46 |
MS.gene053416 | MS.gene89203 | 0.800275 | 1.56E-48 | -1.69E-46 |
MS.gene055578 | MS.gene89203 | 0.805749 | 1.15E-49 | -1.69E-46 |
MS.gene055957 | MS.gene89203 | 0.806038 | 9.99E-50 | -1.69E-46 |
MS.gene056041 | MS.gene89203 | 0.836716 | 7.95E-57 | -1.69E-46 |
MS.gene05640 | MS.gene89203 | 0.814859 | 1.24E-51 | -1.69E-46 |
MS.gene060473 | MS.gene89203 | 0.810154 | 1.33E-50 | -1.69E-46 |
MS.gene061260 | MS.gene89203 | 0.80463 | 1.97E-49 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89203.t1 | MTR_7g059070 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene89203.t1 | MTR_5g029820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene89203.t1 | MTR_5g029770 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene89203.t1 | MTR_4g065990 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene89203.t1 | MTR_4g088150 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene89203.t1 | MTR_2g035230 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene89203.t1 | MTR_8g092720 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene89203.t1 | MTR_8g063500 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene89203.t1 | MTR_8g103245 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene89203.t1 | MTR_8g092820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene89203.t1 | MTR_7g013610 | 100.000 | 136 | 0 | 0 | 1 | 136 | 100 | 235 | 1.10e-95 | 275 |
MS.gene89203.t1 | MTR_4g097175 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene89203.t1 | MTR_1g023630 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene89203.t1 | MTR_8g061940 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene89203.t1 | MTR_8g099430 | 96.324 | 136 | 5 | 0 | 1 | 136 | 1 | 136 | 1.38e-92 | 264 |
MS.gene89203.t1 | MTR_4g097170 | 96.324 | 136 | 5 | 0 | 1 | 136 | 42 | 177 | 2.29e-91 | 262 |
MS.gene89203.t1 | MTR_2g082310 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene89203.t1 | MTR_2g082340 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene89203.t1 | MTR_2g082370 | 85.616 | 146 | 11 | 1 | 1 | 136 | 1 | 146 | 1.74e-82 | 238 |
MS.gene89203.t1 | MTR_2g082400 | 84.559 | 136 | 19 | 2 | 1 | 135 | 1 | 135 | 6.38e-75 | 219 |
MS.gene89203.t1 | MTR_7g013600 | 86.607 | 112 | 15 | 0 | 25 | 136 | 2 | 113 | 1.01e-65 | 195 |
MS.gene89203.t1 | MTR_7g023830 | 67.164 | 134 | 43 | 1 | 1 | 134 | 1 | 133 | 6.48e-56 | 171 |
MS.gene89203.t1 | MTR_1g023630 | 73.504 | 117 | 15 | 3 | 1 | 111 | 1 | 107 | 3.81e-52 | 160 |
MS.gene89203.t1 | MTR_5g024630 | 67.241 | 116 | 35 | 2 | 1 | 116 | 1 | 113 | 1.63e-45 | 144 |
MS.gene89203.t1 | MTR_7g023880 | 58.647 | 133 | 41 | 3 | 3 | 134 | 18 | 137 | 5.46e-43 | 139 |
MS.gene89203.t1 | MTR_5g024530 | 68.182 | 110 | 12 | 2 | 19 | 128 | 68 | 154 | 4.56e-42 | 137 |
MS.gene89203.t1 | MTR_0197s0100 | 100.000 | 66 | 0 | 0 | 1 | 66 | 1 | 66 | 1.45e-40 | 132 |
MS.gene89203.t1 | MTR_8g027840 | 55.102 | 98 | 43 | 1 | 37 | 133 | 28 | 125 | 4.83e-30 | 105 |
MS.gene89203.t1 | MTR_8g105150 | 53.846 | 91 | 10 | 1 | 37 | 127 | 11 | 69 | 1.43e-25 | 92.4 |
MS.gene89203.t1 | MTR_8g092740 | 97.368 | 38 | 1 | 0 | 99 | 136 | 118 | 155 | 4.60e-20 | 80.9 |
MS.gene89203.t1 | MTR_5g089120 | 76.190 | 42 | 10 | 0 | 82 | 123 | 6 | 47 | 6.07e-18 | 73.6 |
MS.gene89203.t1 | MTR_5g024600 | 62.963 | 54 | 20 | 0 | 1 | 54 | 1 | 54 | 1.76e-15 | 66.2 |
MS.gene89203.t1 | MTR_4g128040 | 75.676 | 37 | 9 | 0 | 79 | 115 | 20 | 56 | 3.38e-15 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene89203.t1 | AT5G65360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene89203.t1 | AT5G10390 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene89203.t1 | AT5G10400 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene89203.t1 | AT3G27360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene89203.t1 | AT1G09200 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene89203.t1 | AT5G10980 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene89203.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene89203.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene89203.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene89203.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene89203.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene89203.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene89203.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 29 | 164 | 6.76e-93 | 266 |
MS.gene89203.t1 | AT5G65350 | 94.853 | 136 | 7 | 0 | 1 | 136 | 1 | 136 | 5.09e-91 | 260 |
MS.gene89203.t1 | AT1G75600 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 1.20e-89 | 256 |
MS.gene89203.t1 | AT1G13370 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 5.32e-89 | 254 |
MS.gene89203.t1 | AT1G19890 | 89.781 | 137 | 13 | 1 | 1 | 136 | 1 | 137 | 1.03e-83 | 241 |
MS.gene89203.t1 | AT5G12910 | 71.111 | 135 | 34 | 2 | 1 | 135 | 1 | 130 | 9.51e-67 | 198 |
MS.gene89203.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene89203.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene89203.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene89203.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
Find 31 sgRNAs with CRISPR-Local
Find 34 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAATTTCTCTAACCAATCTT+TGG | 0.237540 | 5.2:+67198003 | None:intergenic |
TCACGAAGAGCGACTGTTCC+TGG | 0.301860 | 5.2:+67198077 | None:intergenic |
GCAGCTGAAGCTTATCTTGT+TGG | 0.346066 | 5.2:-67197921 | MS.gene89203:CDS |
AGCTGATTTCCGAGCGGCTT+TGG | 0.356003 | 5.2:+67198139 | None:intergenic |
GAAGCTTCCTTTCCAAAGAT+TGG | 0.376805 | 5.2:-67198015 | MS.gene89203:CDS |
CGGAAATCAGCTCCGGCGAC+TGG | 0.383526 | 5.2:-67198128 | MS.gene89203:CDS |
TTGGTGGCGAGCTGTTTCCT+TGG | 0.436325 | 5.2:+67198158 | None:intergenic |
TTCTTCACTCCTCCAGTCGC+CGG | 0.441465 | 5.2:+67198116 | None:intergenic |
AAGCCCTCTCGCCTCTGATT+CGG | 0.461144 | 5.2:+67197820 | None:intergenic |
AGCATGAATAGCACAAAGAT+TGG | 0.492949 | 5.2:+67197884 | None:intergenic |
TGATTTCCGAGCGGCTTTGG+TGG | 0.495094 | 5.2:+67198142 | None:intergenic |
CGAGCAAGTTGAATATCCTT+AGG | 0.498424 | 5.2:+67197843 | None:intergenic |
AGCCGCTCGGAAATCAGCTC+CGG | 0.498921 | 5.2:-67198135 | MS.gene89203:CDS |
GAGCAGAGACAGCACTACTC+TGG | 0.505264 | 5.2:+67197952 | None:intergenic |
AGACAGCACTACTCTGGAAT+CGG | 0.510976 | 5.2:+67197958 | None:intergenic |
GAGAGTTACTATTATGCCTA+AGG | 0.517685 | 5.2:-67197859 | MS.gene89203:CDS |
AGAGCACAGAGCTTCTCATA+AGG | 0.533669 | 5.2:-67198037 | MS.gene89203:CDS |
CAACTTGCTCGCCGAATCAG+AGG | 0.534605 | 5.2:-67197831 | MS.gene89203:CDS |
ATTGGTTAGAGAAATTGCTC+AGG | 0.542546 | 5.2:-67197997 | MS.gene89203:CDS |
TCTCTAACCAATCTTTGGAA+AGG | 0.542941 | 5.2:+67198008 | None:intergenic |
AGCTCGCCACCAAAGCCGCT+CGG | 0.547091 | 5.2:-67198148 | MS.gene89203:CDS |
TCGCCGAATCAGAGGCGAGA+GGG | 0.598725 | 5.2:-67197823 | MS.gene89203:CDS |
CAAACAGCAAGAAAATCCAC+CGG | 0.620184 | 5.2:-67198191 | MS.gene89203:CDS |
AAATCAGCTCCGGCGACTGG+AGG | 0.630058 | 5.2:-67198125 | MS.gene89203:CDS |
AAGCCACACAGATTCCGTCC+AGG | 0.632383 | 5.2:-67198095 | MS.gene89203:CDS |
CTCGCCGAATCAGAGGCGAG+AGG | 0.633846 | 5.2:-67197824 | MS.gene89203:CDS |
GAAGAGCGACTGTTCCTGGA+CGG | 0.668213 | 5.2:+67198081 | None:intergenic |
GTTCCTGGACGGAATCTGTG+TGG | 0.677012 | 5.2:+67198092 | None:intergenic |
CCACCGGAGGAAAAGCACCA+AGG | 0.683879 | 5.2:-67198175 | MS.gene89203:CDS |
ACAGCAAGAAAATCCACCGG+AGG | 0.684797 | 5.2:-67198188 | MS.gene89203:CDS |
CGCCGGAGCTGATTTCCGAG+CGG | 0.685230 | 5.2:+67198133 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
CAATTTCTCTAACCAATCTT+TGG | + | chr5.2:67198024-67198043 | None:intergenic | 30.0% | |
AGCATGAATAGCACAAAGAT+TGG | + | chr5.2:67198143-67198162 | None:intergenic | 35.0% | |
ATTGGTTAGAGAAATTGCTC+AGG | - | chr5.2:67198027-67198046 | MS.gene89203:CDS | 35.0% | |
GAGAGTTACTATTATGCCTA+AGG | - | chr5.2:67198165-67198184 | MS.gene89203:CDS | 35.0% | |
! | TCTCTAACCAATCTTTGGAA+AGG | + | chr5.2:67198019-67198038 | None:intergenic | 35.0% |
!!! | GGATTTTCTTGCTGTTTGTT+TGG | + | chr5.2:67197831-67197850 | None:intergenic | 35.0% |
CAAACAGCAAGAAAATCCAC+CGG | - | chr5.2:67197833-67197852 | MS.gene89203:CDS | 40.0% | |
GAAGCTTCCTTTCCAAAGAT+TGG | - | chr5.2:67198009-67198028 | MS.gene89203:CDS | 40.0% | |
! | CGAGCAAGTTGAATATCCTT+AGG | + | chr5.2:67198184-67198203 | None:intergenic | 40.0% |
AGAGCACAGAGCTTCTCATA+AGG | - | chr5.2:67197987-67198006 | MS.gene89203:CDS | 45.0% | |
GCAGCTGAAGCTTATCTTGT+TGG | - | chr5.2:67198103-67198122 | MS.gene89203:CDS | 45.0% | |
!! | AGACAGCACTACTCTGGAAT+CGG | + | chr5.2:67198069-67198088 | None:intergenic | 45.0% |
!!! | TTTCCTTGGTGCTTTTCCTC+CGG | + | chr5.2:67197855-67197874 | None:intergenic | 45.0% |
ACAGCAAGAAAATCCACCGG+AGG | - | chr5.2:67197836-67197855 | MS.gene89203:CDS | 50.0% | |
AAGCCACACAGATTCCGTCC+AGG | - | chr5.2:67197929-67197948 | MS.gene89203:CDS | 55.0% | |
AAGCCCTCTCGCCTCTGATT+CGG | + | chr5.2:67198207-67198226 | None:intergenic | 55.0% | |
GAAGAGCGACTGTTCCTGGA+CGG | + | chr5.2:67197946-67197965 | None:intergenic | 55.0% | |
GAGCAGAGACAGCACTACTC+TGG | + | chr5.2:67198075-67198094 | None:intergenic | 55.0% | |
GTTCCTGGACGGAATCTGTG+TGG | + | chr5.2:67197935-67197954 | None:intergenic | 55.0% | |
TCACGAAGAGCGACTGTTCC+TGG | + | chr5.2:67197950-67197969 | None:intergenic | 55.0% | |
TTCTTCACTCCTCCAGTCGC+CGG | + | chr5.2:67197911-67197930 | None:intergenic | 55.0% | |
! | AGCTGATTTCCGAGCGGCTT+TGG | + | chr5.2:67197888-67197907 | None:intergenic | 55.0% |
! | CAACTTGCTCGCCGAATCAG+AGG | - | chr5.2:67198193-67198212 | MS.gene89203:CDS | 55.0% |
! | TGATTTCCGAGCGGCTTTGG+TGG | + | chr5.2:67197885-67197904 | None:intergenic | 55.0% |
!! | TTGGTGGCGAGCTGTTTCCT+TGG | + | chr5.2:67197869-67197888 | None:intergenic | 55.0% |
AAATCAGCTCCGGCGACTGG+AGG | - | chr5.2:67197899-67197918 | MS.gene89203:CDS | 60.0% | |
AGCCGCTCGGAAATCAGCTC+CGG | - | chr5.2:67197889-67197908 | MS.gene89203:CDS | 60.0% | |
TCGCCGAATCAGAGGCGAGA+GGG | - | chr5.2:67198201-67198220 | MS.gene89203:CDS | 60.0% | |
!! | CCACCGGAGGAAAAGCACCA+AGG | - | chr5.2:67197849-67197868 | MS.gene89203:CDS | 60.0% |
!!! | CCTTGGTGCTTTTCCTCCGG+TGG | + | chr5.2:67197852-67197871 | None:intergenic | 60.0% |
AGCTCGCCACCAAAGCCGCT+CGG | - | chr5.2:67197876-67197895 | MS.gene89203:CDS | 65.0% | |
CGGAAATCAGCTCCGGCGAC+TGG | - | chr5.2:67197896-67197915 | MS.gene89203:CDS | 65.0% | |
CTCGCCGAATCAGAGGCGAG+AGG | - | chr5.2:67198200-67198219 | MS.gene89203:CDS | 65.0% | |
! | CGCCGGAGCTGATTTCCGAG+CGG | + | chr5.2:67197894-67197913 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 67197818 | 67198228 | 67197818 | ID=MS.gene89203 |
chr5.2 | mRNA | 67197818 | 67198228 | 67197818 | ID=MS.gene89203.t1;Parent=MS.gene89203 |
chr5.2 | exon | 67197818 | 67198228 | 67197818 | ID=MS.gene89203.t1.exon1;Parent=MS.gene89203.t1 |
chr5.2 | CDS | 67197818 | 67198228 | 67197818 | ID=cds.MS.gene89203.t1;Parent=MS.gene89203.t1 |
Gene Sequence |
Protein sequence |