AlfalfaGEDB | MS.gene89203

M. sativa cultivar XinJiangDaYe / MS.gene89203

KEGG: K11253
GO: GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0032991 GO:0032993 GO:0044815 GO:0046982 GO:0046983 GO:0097159 GO:1901363
PFAM: PF00125.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89203.t1	XP_004512510.2	100	136	0	0	1	136	104	239	5.80E-64	253.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89203.t1	P68429	100.0	136	0	0	1	136	1	136	1.4e-66	253.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89203.t1	A0A1S3TJX1	100.0	136	0	0	1	136	1	136	4.2e-64	253.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04985	MS.gene89203	0.800741	1.25E-48	-1.69E-46
MS.gene052367	MS.gene89203	0.802948	4.40E-49	-1.69E-46
MS.gene053416	MS.gene89203	0.800275	1.56E-48	-1.69E-46
MS.gene055578	MS.gene89203	0.805749	1.15E-49	-1.69E-46
MS.gene055957	MS.gene89203	0.806038	9.99E-50	-1.69E-46
MS.gene056041	MS.gene89203	0.836716	7.95E-57	-1.69E-46
MS.gene05640	MS.gene89203	0.814859	1.24E-51	-1.69E-46
MS.gene060473	MS.gene89203	0.810154	1.33E-50	-1.69E-46
MS.gene061260	MS.gene89203	0.80463	1.97E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene000604	MS.gene89203	PPI
MS.gene00233	MS.gene89203	PPI
MS.gene009155	MS.gene89203	PPI
MS.gene011711	MS.gene89203	PPI
MS.gene013163	MS.gene89203	PPI
MS.gene014181	MS.gene89203	PPI
MS.gene014301	MS.gene89203	PPI
MS.gene015760	MS.gene89203	PPI
MS.gene016712	MS.gene89203	PPI
MS.gene020313	MS.gene89203	PPI

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Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89203.t1	MTR_7g059070	100.000	136	1	136	1	136	4.79e-96	272
MS.gene89203.t1	MTR_5g029820	100.000	136	1	136	1	136	4.79e-96	272
MS.gene89203.t1	MTR_5g029770	100.000	136	1	136	1	136	4.79e-96	272
MS.gene89203.t1	MTR_4g065990	100.000	136	1	136	1	136	4.79e-96	272
MS.gene89203.t1	MTR_4g088150	100.000	136	1	136	1	136	4.79e-96	272
MS.gene89203.t1	MTR_2g035230	100.000	136	1	136	1	136	4.79e-96	272
MS.gene89203.t1	MTR_8g092720	100.000	136	1	136	1	136	4.79e-96	272
MS.gene89203.t1	MTR_8g063500	100.000	136	1	136	1	136	4.79e-96	272
MS.gene89203.t1	MTR_8g103245	100.000	136	1	136	1	136	4.79e-96	272
MS.gene89203.t1	MTR_8g092820	100.000	136	1	136	1	136	4.79e-96	272

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene89203.t1	AT5G65360	99.265	136	1	1	136	1	136	1.55e-95	271
MS.gene89203.t1	AT5G10390	99.265	136	1	1	136	1	136	1.55e-95	271
MS.gene89203.t1	AT5G10400	99.265	136	1	1	136	1	136	1.55e-95	271
MS.gene89203.t1	AT3G27360	99.265	136	1	1	136	1	136	1.55e-95	271
MS.gene89203.t1	AT1G09200	99.265	136	1	1	136	1	136	1.55e-95	271
MS.gene89203.t1	AT5G10980	97.059	136	4	1	136	1	136	3.44e-93	265
MS.gene89203.t1	AT4G40040	97.059	136	4	1	136	1	136	3.44e-93	265
MS.gene89203.t1	AT4G40040	97.059	136	4	1	136	1	136	3.44e-93	265
MS.gene89203.t1	AT4G40040	97.059	136	4	1	136	1	136	3.44e-93	265
MS.gene89203.t1	AT4G40030	97.059	136	4	1	136	1	136	3.44e-93	265

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Find 31 sgRNAs with CRISPR-Local

Find 34 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAGCTCCGGCGACTGG+AGG	0.630058	5.2:-67198125	MS.gene89203:CDS
AAGCCACACAGATTCCGTCC+AGG	0.632383	5.2:-67198095	MS.gene89203:CDS
AAGCCCTCTCGCCTCTGATT+CGG	0.461144	5.2:+67197820	None:intergenic
ACAGCAAGAAAATCCACCGG+AGG	0.684797	5.2:-67198188	MS.gene89203:CDS
AGACAGCACTACTCTGGAAT+CGG	0.510976	5.2:+67197958	None:intergenic
AGAGCACAGAGCTTCTCATA+AGG	0.533669	5.2:-67198037	MS.gene89203:CDS
AGCATGAATAGCACAAAGAT+TGG	0.492949	5.2:+67197884	None:intergenic
AGCCGCTCGGAAATCAGCTC+CGG	0.498921	5.2:-67198135	MS.gene89203:CDS
AGCTCGCCACCAAAGCCGCT+CGG	0.547091	5.2:-67198148	MS.gene89203:CDS
AGCTGATTTCCGAGCGGCTT+TGG	0.356003	5.2:+67198139	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAATTTCTCTAACCAATCTT+TGG	+	chr5.2:67198024-67198043	None:intergenic	30.0%
AGCATGAATAGCACAAAGAT+TGG	+	chr5.2:67198143-67198162	None:intergenic	35.0%
ATTGGTTAGAGAAATTGCTC+AGG	-	chr5.2:67198027-67198046	MS.gene89203:CDS	35.0%
GAGAGTTACTATTATGCCTA+AGG	-	chr5.2:67198165-67198184	MS.gene89203:CDS	35.0%
CAAACAGCAAGAAAATCCAC+CGG	-	chr5.2:67197833-67197852	MS.gene89203:CDS	40.0%
GAAGCTTCCTTTCCAAAGAT+TGG	-	chr5.2:67198009-67198028	MS.gene89203:CDS	40.0%
AGAGCACAGAGCTTCTCATA+AGG	-	chr5.2:67197987-67198006	MS.gene89203:CDS	45.0%
GCAGCTGAAGCTTATCTTGT+TGG	-	chr5.2:67198103-67198122	MS.gene89203:CDS	45.0%
ACAGCAAGAAAATCCACCGG+AGG	-	chr5.2:67197836-67197855	MS.gene89203:CDS	50.0%
AAGCCACACAGATTCCGTCC+AGG	-	chr5.2:67197929-67197948	MS.gene89203:CDS	55.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	67197818	67198228	67197818	ID=MS.gene89203
chr5.2	mRNA	67197818	67198228	67197818	ID=MS.gene89203.t1;Parent=MS.gene89203
chr5.2	exon	67197818	67198228	67197818	ID=MS.gene89203.t1.exon1;Parent=MS.gene89203.t1
chr5.2	CDS	67197818	67198228	67197818	ID=cds.MS.gene89203.t1;Parent=MS.gene89203.t1

Gene Sequence

>MS.gene89203

ATGGCACGTACCAAACAAACAGCAAGAAAATCCACCGGAGGAAAAGCACCAAGGAAACAGCTCGCCACCAAAGCCGCTCGGAAATCAGCTCCGGCGACTGGAGGAGTGAAGAAGCCACACAGATTCCGTCCAGGAACAGTCGCTCTTCGTGAAATCAGAAAGTATCAGAAGAGCACAGAGCTTCTCATAAGGAAGCTTCCTTTCCAAAGATTGGTTAGAGAAATTGCTCAGGATTTCAAAACTGATCTCCGATTCCAGAGTAGTGCTGTCTCTGCTCTTCAAGAAGCAGCTGAAGCTTATCTTGTTGGTTTGTTTGAAGATACCAATCTTTGTGCTATTCATGCTAAGAGAGTTACTATTATGCCTAAGGATATTCAACTTGCTCGCCGAATCAGAGGCGAGAGGGCTTAG

Protein sequence

>MS.gene89203.t1

MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA