AlfalfaGEDB | MS.gene58114

M. sativa cultivar XinJiangDaYe / MS.gene58114

KEGG: K11253
GO: GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0032991 GO:0032993 GO:0044815 GO:0046982 GO:0046983 GO:0097159 GO:1901363
PFAM: PF00125.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58114.t1	XP_004512510.2	100	136	0	0	1	136	104	239	5.80E-64	253.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58114.t1	P68429	100.0	136	0	0	1	136	1	136	1.4e-66	253.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58114.t1	A0A1S3TJX1	100.0	136	0	0	1	136	1	136	4.2e-64	253.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051914	MS.gene58114	0.84484	5.89E-59	-1.69E-46
MS.gene052308	MS.gene58114	0.874325	7.37E-68	-1.69E-46
MS.gene052367	MS.gene58114	0.828178	1.04E-54	-1.69E-46
MS.gene053173	MS.gene58114	0.883184	5.56E-71	-1.69E-46
MS.gene053348	MS.gene58114	0.855437	6.31E-62	-1.69E-46
MS.gene054551	MS.gene58114	0.8971	1.95E-76	-1.69E-46
MS.gene054552	MS.gene58114	0.835608	1.52E-56	-1.69E-46
MS.gene054593	MS.gene58114	0.869032	4.20E-66	-1.69E-46
MS.gene054633	MS.gene58114	0.806896	6.58E-50	-1.69E-46
MS.gene054662	MS.gene58114	0.807794	4.25E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene000604	MS.gene58114	PPI
MS.gene00233	MS.gene58114	PPI
MS.gene009155	MS.gene58114	PPI
MS.gene011711	MS.gene58114	PPI
MS.gene013163	MS.gene58114	PPI
MS.gene014181	MS.gene58114	PPI
MS.gene014301	MS.gene58114	PPI
MS.gene015760	MS.gene58114	PPI
MS.gene016712	MS.gene58114	PPI
MS.gene020313	MS.gene58114	PPI

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Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58114.t1	MTR_7g059070	100.000	136	1	136	1	136	4.79e-96	272
MS.gene58114.t1	MTR_5g029820	100.000	136	1	136	1	136	4.79e-96	272
MS.gene58114.t1	MTR_5g029770	100.000	136	1	136	1	136	4.79e-96	272
MS.gene58114.t1	MTR_4g065990	100.000	136	1	136	1	136	4.79e-96	272
MS.gene58114.t1	MTR_4g088150	100.000	136	1	136	1	136	4.79e-96	272
MS.gene58114.t1	MTR_2g035230	100.000	136	1	136	1	136	4.79e-96	272
MS.gene58114.t1	MTR_8g092720	100.000	136	1	136	1	136	4.79e-96	272
MS.gene58114.t1	MTR_8g063500	100.000	136	1	136	1	136	4.79e-96	272
MS.gene58114.t1	MTR_8g103245	100.000	136	1	136	1	136	4.79e-96	272
MS.gene58114.t1	MTR_8g092820	100.000	136	1	136	1	136	4.79e-96	272

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58114.t1	AT5G65360	99.265	136	1	1	136	1	136	1.55e-95	271
MS.gene58114.t1	AT5G10390	99.265	136	1	1	136	1	136	1.55e-95	271
MS.gene58114.t1	AT5G10400	99.265	136	1	1	136	1	136	1.55e-95	271
MS.gene58114.t1	AT3G27360	99.265	136	1	1	136	1	136	1.55e-95	271
MS.gene58114.t1	AT1G09200	99.265	136	1	1	136	1	136	1.55e-95	271
MS.gene58114.t1	AT5G10980	97.059	136	4	1	136	1	136	3.44e-93	265
MS.gene58114.t1	AT4G40040	97.059	136	4	1	136	1	136	3.44e-93	265
MS.gene58114.t1	AT4G40040	97.059	136	4	1	136	1	136	3.44e-93	265
MS.gene58114.t1	AT4G40040	97.059	136	4	1	136	1	136	3.44e-93	265
MS.gene58114.t1	AT4G40030	97.059	136	4	1	136	1	136	3.44e-93	265

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Find 36 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAGCTCCGGCGACCGG+AGG	0.599225	4.2:+9550588	MS.gene58114:CDS
AAGAAGAATCAGAGGCGAGA+GGG	0.597241	4.2:+9550890	MS.gene58114:CDS
AAGCCACACAGATTCAGACC+TGG	0.672238	4.2:+9550618	MS.gene58114:CDS
ACAGCTCGCAAGTCCACCGG+CGG	0.655092	4.2:+9550525	MS.gene58114:CDS
AGCTCGCCACAAAGGCCGCT+CGG	0.491073	4.2:+9550565	MS.gene58114:CDS
CAAACAGCTCGCAAGTCCAC+CGG	0.573307	4.2:+9550522	MS.gene58114:CDS
CAACTTGCAAGAAGAATCAG+AGG	0.655500	4.2:+9550882	MS.gene58114:CDS
CAAGAAGAATCAGAGGCGAG+AGG	0.648850	4.2:+9550889	MS.gene58114:CDS
CAGTGCTGTTTCTGCTCTTC+AGG	0.258870	4.2:+9550767	MS.gene58114:CDS
CCACCGGCGGCAAGGCTCCC+CGG	0.480154	4.2:+9550538	MS.gene58114:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTTAGCATGAATTGCACAA+AGG	-	chr4.2:9550836-9550855	None:intergenic	35.0%
CAACTTGCAAGAAGAATCAG+AGG	+	chr4.2:9550882-9550901	MS.gene58114:CDS	40.0%
GACGTTGGAATGGAAGTTTA+CGG	-	chr4.2:9550698-9550717	None:intergenic	40.0%
AAGAAGAATCAGAGGCGAGA+GGG	+	chr4.2:9550890-9550909	MS.gene58114:CDS	45.0%
CGATTTCACGAACAAGACGT+TGG	-	chr4.2:9550713-9550732	None:intergenic	45.0%
GAGAGTTACAATCATGCCCA+AGG	+	chr4.2:9550854-9550873	MS.gene58114:CDS	45.0%
TCACGAACAAGACGTTGGAA+TGG	-	chr4.2:9550708-9550727	None:intergenic	45.0%
TCTCTCAAAGCAACTGTTCC+AGG	-	chr4.2:9550639-9550658	None:intergenic	45.0%
AAGCCACACAGATTCAGACC+TGG	+	chr4.2:9550618-9550637	MS.gene58114:CDS	50.0%
CAAGAAGAATCAGAGGCGAG+AGG	+	chr4.2:9550889-9550908	MS.gene58114:CDS	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	9550507	9550917	9550507	ID=MS.gene58114
chr4.2	mRNA	9550507	9550917	9550507	ID=MS.gene58114.t1;Parent=MS.gene58114
chr4.2	exon	9550507	9550917	9550507	ID=MS.gene58114.t1.exon1;Parent=MS.gene58114.t1
chr4.2	CDS	9550507	9550917	9550507	ID=cds.MS.gene58114.t1;Parent=MS.gene58114.t1

Gene Sequence

>MS.gene58114

ATGGCACGTACCAAGCAAACAGCTCGCAAGTCCACCGGCGGCAAGGCTCCCCGGAAGCAGCTCGCCACAAAGGCCGCTCGGAAATCAGCTCCGGCGACCGGAGGAGTGAAGAAGCCACACAGATTCAGACCTGGAACAGTTGCTTTGAGAGAGATTCGTAAGTATCAGAAGAGCACTGAGCTTCTCATCCGTAAACTTCCATTCCAACGTCTTGTTCGTGAAATCGCTCAAGATTTCAAGACAGATCTTAGATTCCAGAGCAGTGCTGTTTCTGCTCTTCAGGAAGCAGCTGAAGCTTACTTGGTTGGACTCTTTGAAGACACAAACCTTTGTGCAATTCATGCTAAGAGAGTTACAATCATGCCCAAGGACATTCAACTTGCAAGAAGAATCAGAGGCGAGAGGGCTTAG

Protein sequence

>MS.gene58114.t1

MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA