Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66051.t1 | XP_004512510.2 | 100 | 136 | 0 | 0 | 1 | 136 | 104 | 239 | 5.80E-64 | 253.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66051.t1 | P68429 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.4e-66 | 253.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66051.t1 | A0A1S3TJX1 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.2e-64 | 253.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049989 | MS.gene66051 | 0.830491 | 2.85E-55 | -1.69E-46 |
MS.gene050297 | MS.gene66051 | 0.84899 | 4.31E-60 | -1.69E-46 |
MS.gene050648 | MS.gene66051 | 0.825367 | 4.87E-54 | -1.69E-46 |
MS.gene051263 | MS.gene66051 | 0.848017 | 8.01E-60 | -1.69E-46 |
MS.gene051629 | MS.gene66051 | 0.815748 | 7.89E-52 | -1.69E-46 |
MS.gene052367 | MS.gene66051 | 0.811441 | 6.99E-51 | -1.69E-46 |
MS.gene054643 | MS.gene66051 | 0.822093 | 2.85E-53 | -1.69E-46 |
MS.gene055957 | MS.gene66051 | 0.848331 | 6.56E-60 | -1.69E-46 |
MS.gene056041 | MS.gene66051 | 0.814391 | 1.58E-51 | -1.69E-46 |
MS.gene058197 | MS.gene66051 | 0.800318 | 1.52E-48 | -1.69E-46 |
MS.gene058198 | MS.gene66051 | 0.804951 | 1.69E-49 | -1.69E-46 |
MS.gene058818 | MS.gene66051 | 0.80587 | 1.08E-49 | -1.69E-46 |
MS.gene059300 | MS.gene66051 | 0.817567 | 3.08E-52 | -1.69E-46 |
MS.gene06057 | MS.gene66051 | 0.843863 | 1.08E-58 | -1.69E-46 |
MS.gene061260 | MS.gene66051 | 0.808315 | 3.29E-50 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66051.t1 | MTR_7g059070 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene66051.t1 | MTR_5g029820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene66051.t1 | MTR_5g029770 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene66051.t1 | MTR_4g065990 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene66051.t1 | MTR_4g088150 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene66051.t1 | MTR_2g035230 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene66051.t1 | MTR_8g092720 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene66051.t1 | MTR_8g063500 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene66051.t1 | MTR_8g103245 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene66051.t1 | MTR_8g092820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene66051.t1 | MTR_7g013610 | 100.000 | 136 | 0 | 0 | 1 | 136 | 100 | 235 | 1.10e-95 | 275 |
MS.gene66051.t1 | MTR_4g097175 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene66051.t1 | MTR_1g023630 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene66051.t1 | MTR_8g061940 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene66051.t1 | MTR_8g099430 | 96.324 | 136 | 5 | 0 | 1 | 136 | 1 | 136 | 1.38e-92 | 264 |
MS.gene66051.t1 | MTR_4g097170 | 96.324 | 136 | 5 | 0 | 1 | 136 | 42 | 177 | 2.29e-91 | 262 |
MS.gene66051.t1 | MTR_2g082310 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene66051.t1 | MTR_2g082340 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene66051.t1 | MTR_2g082370 | 85.616 | 146 | 11 | 1 | 1 | 136 | 1 | 146 | 1.74e-82 | 238 |
MS.gene66051.t1 | MTR_2g082400 | 84.559 | 136 | 19 | 2 | 1 | 135 | 1 | 135 | 6.38e-75 | 219 |
MS.gene66051.t1 | MTR_7g013600 | 86.607 | 112 | 15 | 0 | 25 | 136 | 2 | 113 | 1.01e-65 | 195 |
MS.gene66051.t1 | MTR_7g023830 | 67.164 | 134 | 43 | 1 | 1 | 134 | 1 | 133 | 6.48e-56 | 171 |
MS.gene66051.t1 | MTR_1g023630 | 73.504 | 117 | 15 | 3 | 1 | 111 | 1 | 107 | 3.81e-52 | 160 |
MS.gene66051.t1 | MTR_5g024630 | 67.241 | 116 | 35 | 2 | 1 | 116 | 1 | 113 | 1.63e-45 | 144 |
MS.gene66051.t1 | MTR_7g023880 | 58.647 | 133 | 41 | 3 | 3 | 134 | 18 | 137 | 5.46e-43 | 139 |
MS.gene66051.t1 | MTR_5g024530 | 68.182 | 110 | 12 | 2 | 19 | 128 | 68 | 154 | 4.56e-42 | 137 |
MS.gene66051.t1 | MTR_0197s0100 | 100.000 | 66 | 0 | 0 | 1 | 66 | 1 | 66 | 1.45e-40 | 132 |
MS.gene66051.t1 | MTR_8g027840 | 55.102 | 98 | 43 | 1 | 37 | 133 | 28 | 125 | 4.83e-30 | 105 |
MS.gene66051.t1 | MTR_8g105150 | 53.846 | 91 | 10 | 1 | 37 | 127 | 11 | 69 | 1.43e-25 | 92.4 |
MS.gene66051.t1 | MTR_8g092740 | 97.368 | 38 | 1 | 0 | 99 | 136 | 118 | 155 | 4.60e-20 | 80.9 |
MS.gene66051.t1 | MTR_5g089120 | 76.190 | 42 | 10 | 0 | 82 | 123 | 6 | 47 | 6.07e-18 | 73.6 |
MS.gene66051.t1 | MTR_5g024600 | 62.963 | 54 | 20 | 0 | 1 | 54 | 1 | 54 | 1.76e-15 | 66.2 |
MS.gene66051.t1 | MTR_4g128040 | 75.676 | 37 | 9 | 0 | 79 | 115 | 20 | 56 | 3.38e-15 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66051.t1 | AT5G65360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene66051.t1 | AT5G10390 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene66051.t1 | AT5G10400 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene66051.t1 | AT3G27360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene66051.t1 | AT1G09200 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene66051.t1 | AT5G10980 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene66051.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene66051.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene66051.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene66051.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene66051.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene66051.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene66051.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 29 | 164 | 6.76e-93 | 266 |
MS.gene66051.t1 | AT5G65350 | 94.853 | 136 | 7 | 0 | 1 | 136 | 1 | 136 | 5.09e-91 | 260 |
MS.gene66051.t1 | AT1G75600 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 1.20e-89 | 256 |
MS.gene66051.t1 | AT1G13370 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 5.32e-89 | 254 |
MS.gene66051.t1 | AT1G19890 | 89.781 | 137 | 13 | 1 | 1 | 136 | 1 | 137 | 1.03e-83 | 241 |
MS.gene66051.t1 | AT5G12910 | 71.111 | 135 | 34 | 2 | 1 | 135 | 1 | 130 | 9.51e-67 | 198 |
MS.gene66051.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene66051.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene66051.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene66051.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
Find 29 sgRNAs with CRISPR-Local
Find 34 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCACGAAGCGCGACAGTTCC+AGG | 0.362532 | 7.3:+45764339 | None:intergenic |
GCTGCTGAAGCGTATCTTGT+TGG | 0.411498 | 7.3:-45764183 | MS.gene66051:CDS |
GGATTTGCGTGCTGTTTGTT+TGG | 0.426439 | 7.3:+45764458 | None:intergenic |
TTCTTCACTCCTCCGGTCGC+CGG | 0.442119 | 7.3:+45764378 | None:intergenic |
CTTGCAAGTTGAATATCCTT+AGG | 0.450286 | 7.3:+45764105 | None:intergenic |
CGAAAATCAGCTCCGGCGAC+CGG | 0.463917 | 7.3:-45764390 | MS.gene66051:CDS |
TGGTGGCGAGTTGTTTGCGT+GGG | 0.485319 | 7.3:+45764421 | None:intergenic |
CAAGGAGAATTCGTGGTGAA+AGG | 0.485929 | 7.3:-45764086 | MS.gene66051:CDS |
AAGCCACACCGTTTCCGTCC+TGG | 0.490087 | 7.3:-45764357 | MS.gene66051:CDS |
CGACAGTTCCAGGACGGAAA+CGG | 0.513929 | 7.3:+45764349 | None:intergenic |
GAGAGTTACTATTATGCCTA+AGG | 0.517685 | 7.3:-45764121 | MS.gene66051:CDS |
AAGGAGAATTCGTGGTGAAA+GGG | 0.519150 | 7.3:-45764085 | MS.gene66051:CDS |
AGAGCACTGAGCTTCTCATA+AGG | 0.520360 | 7.3:-45764299 | MS.gene66051:CDS |
GTGTGGCTTCTTCACTCCTC+CGG | 0.526132 | 7.3:+45764371 | None:intergenic |
AGCCGCTCGAAAATCAGCTC+CGG | 0.532014 | 7.3:-45764397 | MS.gene66051:CDS |
CAACTTGCAAGGAGAATTCG+TGG | 0.532409 | 7.3:-45764093 | MS.gene66051:CDS |
CAAACAGCACGCAAATCCAC+CGG | 0.549355 | 7.3:-45764453 | MS.gene66051:CDS |
CAGTGCTCTTCTGATACTTG+CGG | 0.560252 | 7.3:+45764313 | None:intergenic |
ACTGCTTTGAAATCTGAGAT+CGG | 0.560988 | 7.3:+45764227 | None:intergenic |
CTAAGGATATTCAACTTGCA+AGG | 0.586821 | 7.3:-45764104 | MS.gene66051:CDS |
TCTTGTTCGTGAAATCGCAC+AGG | 0.597491 | 7.3:-45764259 | MS.gene66051:CDS |
TTGGTGGCGAGTTGTTTGCG+TGG | 0.598004 | 7.3:+45764420 | None:intergenic |
TCACGAACAAGACGTTGGAA+TGG | 0.598115 | 7.3:+45764270 | None:intergenic |
AAATCAGCTCCGGCGACCGG+AGG | 0.599225 | 7.3:-45764387 | MS.gene66051:CDS |
CGATTTCACGAACAAGACGT+TGG | 0.613448 | 7.3:+45764265 | None:intergenic |
GTTCCAGGACGGAAACGGTG+TGG | 0.690959 | 7.3:+45764354 | None:intergenic |
ACAGCACGCAAATCCACCGG+CGG | 0.691035 | 7.3:-45764450 | MS.gene66051:CDS |
GGTGGCGAGTTGTTTGCGTG+GGG | 0.692652 | 7.3:+45764422 | None:intergenic |
GAAGCGCGACAGTTCCAGGA+CGG | 0.694526 | 7.3:+45764343 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
CTAAGGATATTCAACTTGCA+AGG | - | chr7.3:45764444-45764463 | MS.gene66051:CDS | 35.0% | |
GAGAGTTACTATTATGCCTA+AGG | - | chr7.3:45764427-45764446 | MS.gene66051:CDS | 35.0% | |
! | CTTGCAAGTTGAATATCCTT+AGG | + | chr7.3:45764446-45764465 | None:intergenic | 35.0% |
!! | ACTGCTTTGAAATCTGAGAT+CGG | + | chr7.3:45764324-45764343 | None:intergenic | 35.0% |
AAGGAGAATTCGTGGTGAAA+GGG | - | chr7.3:45764463-45764482 | MS.gene66051:CDS | 40.0% | |
CAACTTGCAAGGAGAATTCG+TGG | - | chr7.3:45764455-45764474 | MS.gene66051:CDS | 45.0% | |
CAAGGAGAATTCGTGGTGAA+AGG | - | chr7.3:45764462-45764481 | MS.gene66051:CDS | 45.0% | |
CAGTGCTCTTCTGATACTTG+CGG | + | chr7.3:45764238-45764257 | None:intergenic | 45.0% | |
CGATTTCACGAACAAGACGT+TGG | + | chr7.3:45764286-45764305 | None:intergenic | 45.0% | |
TCACGAACAAGACGTTGGAA+TGG | + | chr7.3:45764281-45764300 | None:intergenic | 45.0% | |
TCTTGTTCGTGAAATCGCAC+AGG | - | chr7.3:45764289-45764308 | MS.gene66051:CDS | 45.0% | |
!! | AGAGCACTGAGCTTCTCATA+AGG | - | chr7.3:45764249-45764268 | MS.gene66051:CDS | 45.0% |
!! | GGATTTGCGTGCTGTTTGTT+TGG | + | chr7.3:45764093-45764112 | None:intergenic | 45.0% |
CAAACAGCACGCAAATCCAC+CGG | - | chr7.3:45764095-45764114 | MS.gene66051:CDS | 50.0% | |
GCTGCTGAAGCGTATCTTGT+TGG | - | chr7.3:45764365-45764384 | MS.gene66051:CDS | 50.0% | |
!! | AGCTGATTTTCGAGCGGCTT+TGG | + | chr7.3:45764150-45764169 | None:intergenic | 50.0% |
!! | TGATTTTCGAGCGGCTTTGG+TGG | + | chr7.3:45764147-45764166 | None:intergenic | 50.0% |
AGCCGCTCGAAAATCAGCTC+CGG | - | chr7.3:45764151-45764170 | MS.gene66051:CDS | 55.0% | |
CGACAGTTCCAGGACGGAAA+CGG | + | chr7.3:45764202-45764221 | None:intergenic | 55.0% | |
GTGTGGCTTCTTCACTCCTC+CGG | + | chr7.3:45764180-45764199 | None:intergenic | 55.0% | |
! | TGGTGGCGAGTTGTTTGCGT+GGG | + | chr7.3:45764130-45764149 | None:intergenic | 55.0% |
!! | TTGGTGGCGAGTTGTTTGCG+TGG | + | chr7.3:45764131-45764150 | None:intergenic | 55.0% |
AAGCCACACCGTTTCCGTCC+TGG | - | chr7.3:45764191-45764210 | MS.gene66051:CDS | 60.0% | |
ACAGCACGCAAATCCACCGG+CGG | - | chr7.3:45764098-45764117 | MS.gene66051:CDS | 60.0% | |
CGAAAATCAGCTCCGGCGAC+CGG | - | chr7.3:45764158-45764177 | MS.gene66051:CDS | 60.0% | |
GAAGCGCGACAGTTCCAGGA+CGG | + | chr7.3:45764208-45764227 | None:intergenic | 60.0% | |
GGTGGCGAGTTGTTTGCGTG+GGG | + | chr7.3:45764129-45764148 | None:intergenic | 60.0% | |
GTTCCAGGACGGAAACGGTG+TGG | + | chr7.3:45764197-45764216 | None:intergenic | 60.0% | |
TCACGAAGCGCGACAGTTCC+AGG | + | chr7.3:45764212-45764231 | None:intergenic | 60.0% | |
TTCTTCACTCCTCCGGTCGC+CGG | + | chr7.3:45764173-45764192 | None:intergenic | 60.0% | |
! | TTTGCGTGGGGCTTTTCCGC+CGG | + | chr7.3:45764117-45764136 | None:intergenic | 60.0% |
!! | CGCCGGAGCTGATTTTCGAG+CGG | + | chr7.3:45764156-45764175 | None:intergenic | 60.0% |
AAATCAGCTCCGGCGACCGG+AGG | - | chr7.3:45764161-45764180 | MS.gene66051:CDS | 65.0% | |
! | GCGTGGGGCTTTTCCGCCGG+TGG | + | chr7.3:45764114-45764133 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 45764080 | 45764490 | 45764080 | ID=MS.gene66051 |
chr7.3 | mRNA | 45764080 | 45764490 | 45764080 | ID=MS.gene66051.t1;Parent=MS.gene66051 |
chr7.3 | exon | 45764080 | 45764490 | 45764080 | ID=MS.gene66051.t1.exon1;Parent=MS.gene66051.t1 |
chr7.3 | CDS | 45764080 | 45764490 | 45764080 | ID=cds.MS.gene66051.t1;Parent=MS.gene66051.t1 |
Gene Sequence |
Protein sequence |