Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78924.t1 | XP_004512510.2 | 100 | 136 | 0 | 0 | 1 | 136 | 104 | 239 | 5.80E-64 | 253.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78924.t1 | P68429 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.4e-66 | 253.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78924.t1 | A0A1S3TJX1 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.2e-64 | 253.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene053348 | MS.gene78924 | 0.815836 | 7.54E-52 | -1.69E-46 |
MS.gene054551 | MS.gene78924 | 0.819352 | 1.22E-52 | -1.69E-46 |
MS.gene054552 | MS.gene78924 | 0.804962 | 1.68E-49 | -1.69E-46 |
MS.gene054593 | MS.gene78924 | 0.81417 | 1.77E-51 | -1.69E-46 |
MS.gene055308 | MS.gene78924 | 0.811593 | 6.48E-51 | -1.69E-46 |
MS.gene055957 | MS.gene78924 | 0.825909 | 3.62E-54 | -1.69E-46 |
MS.gene056041 | MS.gene78924 | 0.838909 | 2.17E-57 | -1.69E-46 |
MS.gene056042 | MS.gene78924 | 0.812786 | 3.56E-51 | -1.69E-46 |
MS.gene058128 | MS.gene78924 | 0.803453 | 3.46E-49 | -1.69E-46 |
MS.gene059553 | MS.gene78924 | 0.800772 | 1.23E-48 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78924.t1 | MTR_7g059070 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene78924.t1 | MTR_5g029820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene78924.t1 | MTR_5g029770 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene78924.t1 | MTR_4g065990 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene78924.t1 | MTR_4g088150 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene78924.t1 | MTR_2g035230 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene78924.t1 | MTR_8g092720 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene78924.t1 | MTR_8g063500 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene78924.t1 | MTR_8g103245 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene78924.t1 | MTR_8g092820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene78924.t1 | MTR_7g013610 | 100.000 | 136 | 0 | 0 | 1 | 136 | 100 | 235 | 1.10e-95 | 275 |
MS.gene78924.t1 | MTR_4g097175 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene78924.t1 | MTR_1g023630 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene78924.t1 | MTR_8g061940 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene78924.t1 | MTR_8g099430 | 96.324 | 136 | 5 | 0 | 1 | 136 | 1 | 136 | 1.38e-92 | 264 |
MS.gene78924.t1 | MTR_4g097170 | 96.324 | 136 | 5 | 0 | 1 | 136 | 42 | 177 | 2.29e-91 | 262 |
MS.gene78924.t1 | MTR_2g082310 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene78924.t1 | MTR_2g082340 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene78924.t1 | MTR_2g082370 | 85.616 | 146 | 11 | 1 | 1 | 136 | 1 | 146 | 1.74e-82 | 238 |
MS.gene78924.t1 | MTR_2g082400 | 84.559 | 136 | 19 | 2 | 1 | 135 | 1 | 135 | 6.38e-75 | 219 |
MS.gene78924.t1 | MTR_7g013600 | 86.607 | 112 | 15 | 0 | 25 | 136 | 2 | 113 | 1.01e-65 | 195 |
MS.gene78924.t1 | MTR_7g023830 | 67.164 | 134 | 43 | 1 | 1 | 134 | 1 | 133 | 6.48e-56 | 171 |
MS.gene78924.t1 | MTR_1g023630 | 73.504 | 117 | 15 | 3 | 1 | 111 | 1 | 107 | 3.81e-52 | 160 |
MS.gene78924.t1 | MTR_5g024630 | 67.241 | 116 | 35 | 2 | 1 | 116 | 1 | 113 | 1.63e-45 | 144 |
MS.gene78924.t1 | MTR_7g023880 | 58.647 | 133 | 41 | 3 | 3 | 134 | 18 | 137 | 5.46e-43 | 139 |
MS.gene78924.t1 | MTR_5g024530 | 68.182 | 110 | 12 | 2 | 19 | 128 | 68 | 154 | 4.56e-42 | 137 |
MS.gene78924.t1 | MTR_0197s0100 | 100.000 | 66 | 0 | 0 | 1 | 66 | 1 | 66 | 1.45e-40 | 132 |
MS.gene78924.t1 | MTR_8g027840 | 55.102 | 98 | 43 | 1 | 37 | 133 | 28 | 125 | 4.83e-30 | 105 |
MS.gene78924.t1 | MTR_8g105150 | 53.846 | 91 | 10 | 1 | 37 | 127 | 11 | 69 | 1.43e-25 | 92.4 |
MS.gene78924.t1 | MTR_8g092740 | 97.368 | 38 | 1 | 0 | 99 | 136 | 118 | 155 | 4.60e-20 | 80.9 |
MS.gene78924.t1 | MTR_5g089120 | 76.190 | 42 | 10 | 0 | 82 | 123 | 6 | 47 | 6.07e-18 | 73.6 |
MS.gene78924.t1 | MTR_5g024600 | 62.963 | 54 | 20 | 0 | 1 | 54 | 1 | 54 | 1.76e-15 | 66.2 |
MS.gene78924.t1 | MTR_4g128040 | 75.676 | 37 | 9 | 0 | 79 | 115 | 20 | 56 | 3.38e-15 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene78924.t1 | AT5G65360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene78924.t1 | AT5G10390 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene78924.t1 | AT5G10400 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene78924.t1 | AT3G27360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene78924.t1 | AT1G09200 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene78924.t1 | AT5G10980 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene78924.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene78924.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene78924.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene78924.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene78924.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene78924.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene78924.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 29 | 164 | 6.76e-93 | 266 |
MS.gene78924.t1 | AT5G65350 | 94.853 | 136 | 7 | 0 | 1 | 136 | 1 | 136 | 5.09e-91 | 260 |
MS.gene78924.t1 | AT1G75600 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 1.20e-89 | 256 |
MS.gene78924.t1 | AT1G13370 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 5.32e-89 | 254 |
MS.gene78924.t1 | AT1G19890 | 89.781 | 137 | 13 | 1 | 1 | 136 | 1 | 137 | 1.03e-83 | 241 |
MS.gene78924.t1 | AT5G12910 | 71.111 | 135 | 34 | 2 | 1 | 135 | 1 | 130 | 9.51e-67 | 198 |
MS.gene78924.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene78924.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene78924.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene78924.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
Find 34 sgRNAs with CRISPR-Local
Find 36 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGGTTGCCGGAGCAGATTTC+CGG | 0.243304 | 5.3:-18804979 | None:intergenic |
TTGGTGGCTAGCTGCTTTCT+TGG | 0.277587 | 5.3:-18804950 | None:intergenic |
TTCTTGACTCCTCCGGTTGC+CGG | 0.293014 | 5.3:-18804992 | None:intergenic |
TGAGAAGTTCAGTGCTCTTC+TGG | 0.315268 | 5.3:-18805066 | None:intergenic |
GCTGCTGAAGCTTATCTTGT+TGG | 0.357332 | 5.3:+18805187 | MS.gene78924:CDS |
TCACGAAGTGCAACAGTTCC+AGG | 0.377831 | 5.3:-18805031 | None:intergenic |
AGCAGATTTCCGGGCAGCTT+TGG | 0.390197 | 5.3:-18804969 | None:intergenic |
CGGAAATCTGCTCCGGCAAC+CGG | 0.392471 | 5.3:+18804980 | MS.gene78924:CDS |
GGTTGCCGGAGCAGATTTCC+GGG | 0.407337 | 5.3:-18804978 | None:intergenic |
TTATCTTGTTGGTTTGTTTG+AGG | 0.428809 | 5.3:+18805198 | MS.gene78924:CDS |
CGATTTCACGAACAAGTCTC+TGG | 0.432729 | 5.3:-18805105 | None:intergenic |
GAGCGGAAACAGCACTACTT+TGG | 0.466016 | 5.3:-18805156 | None:intergenic |
AGATTTCCGGGCAGCTTTGG+TGG | 0.468887 | 5.3:-18804966 | None:intergenic |
AGCTAGCCACCAAAGCTGCC+CGG | 0.491500 | 5.3:+18804960 | MS.gene78924:CDS |
CGAGCGAGTTGAATATCCTT+AGG | 0.499677 | 5.3:-18805265 | None:intergenic |
GTGTGGCTTCTTGACTCCTC+CGG | 0.501667 | 5.3:-18804999 | None:intergenic |
AAACAGCACTACTTTGGAAT+CGG | 0.503585 | 5.3:-18805150 | None:intergenic |
AGCTGCCCGGAAATCTGCTC+CGG | 0.505877 | 5.3:+18804973 | MS.gene78924:CDS |
AGAGCACTGAACTTCTCATA+AGG | 0.521842 | 5.3:+18805071 | MS.gene78924:CDS |
AGTAACTCTCTTAGCATGAA+TGG | 0.521941 | 5.3:-18805236 | None:intergenic |
GAGAGTTACTATCATGCCTA+AGG | 0.550012 | 5.3:+18805249 | MS.gene78924:CDS |
ACTTGTTCGTGAAATCGCTC+AGG | 0.551065 | 5.3:+18805111 | MS.gene78924:CDS |
CAACTCGCTCGCAGAATCAG+AGG | 0.556058 | 5.3:+18805277 | MS.gene78924:CDS |
CAGTGCTCTTCTGGTACTTG+CGG | 0.559165 | 5.3:-18805057 | None:intergenic |
TTCAGCAGCTTCTTGAAGAG+CGG | 0.576635 | 5.3:-18805173 | None:intergenic |
CAAACTGCTCGCAAATCCAC+CGG | 0.583641 | 5.3:+18804917 | MS.gene78924:CDS |
TCGCAGAATCAGAGGCGAGA+GGG | 0.584947 | 5.3:+18805285 | MS.gene78924:CDS |
TCACGAACAAGTCTCTGGAA+TGG | 0.590006 | 5.3:-18805100 | None:intergenic |
CTCGCAGAATCAGAGGCGAG+AGG | 0.599896 | 5.3:+18805284 | MS.gene78924:CDS |
AAATCTGCTCCGGCAACCGG+AGG | 0.607496 | 5.3:+18804983 | MS.gene78924:CDS |
AAGCCACACAGATTCCGTCC+TGG | 0.622196 | 5.3:+18805013 | MS.gene78924:CDS |
GAAGTGCAACAGTTCCAGGA+CGG | 0.690156 | 5.3:-18805027 | None:intergenic |
GTTCCAGGACGGAATCTGTG+TGG | 0.699556 | 5.3:-18805016 | None:intergenic |
ACTGCTCGCAAATCCACCGG+AGG | 0.707120 | 5.3:+18804920 | MS.gene78924:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATCTTGTTGGTTTGTTTG+AGG | + | chr5.3:18805198-18805217 | MS.gene78924:CDS | 30.0% |
AGTAACTCTCTTAGCATGAA+TGG | - | chr5.3:18805239-18805258 | None:intergenic | 35.0% | |
!! | AAACAGCACTACTTTGGAAT+CGG | - | chr5.3:18805153-18805172 | None:intergenic | 35.0% |
GAGAGTTACTATCATGCCTA+AGG | + | chr5.3:18805249-18805268 | MS.gene78924:CDS | 40.0% | |
!! | AGAGCACTGAACTTCTCATA+AGG | + | chr5.3:18805071-18805090 | MS.gene78924:CDS | 40.0% |
ACTTGTTCGTGAAATCGCTC+AGG | + | chr5.3:18805111-18805130 | MS.gene78924:CDS | 45.0% | |
CGATTTCACGAACAAGTCTC+TGG | - | chr5.3:18805108-18805127 | None:intergenic | 45.0% | |
GCTGCTGAAGCTTATCTTGT+TGG | + | chr5.3:18805187-18805206 | MS.gene78924:CDS | 45.0% | |
TGAGAAGTTCAGTGCTCTTC+TGG | - | chr5.3:18805069-18805088 | None:intergenic | 45.0% | |
TTCAGCAGCTTCTTGAAGAG+CGG | - | chr5.3:18805176-18805195 | None:intergenic | 45.0% | |
! | CGAGCGAGTTGAATATCCTT+AGG | - | chr5.3:18805268-18805287 | None:intergenic | 45.0% |
! | TCACGAACAAGTCTCTGGAA+TGG | - | chr5.3:18805103-18805122 | None:intergenic | 45.0% |
!!! | CTTTCTTGGTGCTTTTCCTC+CGG | - | chr5.3:18804939-18804958 | None:intergenic | 45.0% |
CAAACTGCTCGCAAATCCAC+CGG | + | chr5.3:18804917-18804936 | MS.gene78924:CDS | 50.0% | |
CAGTGCTCTTCTGGTACTTG+CGG | - | chr5.3:18805060-18805079 | None:intergenic | 50.0% | |
GAAGTGCAACAGTTCCAGGA+CGG | - | chr5.3:18805030-18805049 | None:intergenic | 50.0% | |
GAGCGGAAACAGCACTACTT+TGG | - | chr5.3:18805159-18805178 | None:intergenic | 50.0% | |
TCACGAAGTGCAACAGTTCC+AGG | - | chr5.3:18805034-18805053 | None:intergenic | 50.0% | |
! | TTGGTGGCTAGCTGCTTTCT+TGG | - | chr5.3:18804953-18804972 | None:intergenic | 50.0% |
AAGCCACACAGATTCCGTCC+TGG | + | chr5.3:18805013-18805032 | MS.gene78924:CDS | 55.0% | |
AGCAGATTTCCGGGCAGCTT+TGG | - | chr5.3:18804972-18804991 | None:intergenic | 55.0% | |
CAACTCGCTCGCAGAATCAG+AGG | + | chr5.3:18805277-18805296 | MS.gene78924:CDS | 55.0% | |
GTGTGGCTTCTTGACTCCTC+CGG | - | chr5.3:18805002-18805021 | None:intergenic | 55.0% | |
GTTCCAGGACGGAATCTGTG+TGG | - | chr5.3:18805019-18805038 | None:intergenic | 55.0% | |
TCGCAGAATCAGAGGCGAGA+GGG | + | chr5.3:18805285-18805304 | MS.gene78924:CDS | 55.0% | |
TTCTTGACTCCTCCGGTTGC+CGG | - | chr5.3:18804995-18805014 | None:intergenic | 55.0% | |
! | AGATTTCCGGGCAGCTTTGG+TGG | - | chr5.3:18804969-18804988 | None:intergenic | 55.0% |
!!! | TCTTGGTGCTTTTCCTCCGG+TGG | - | chr5.3:18804936-18804955 | None:intergenic | 55.0% |
AAATCTGCTCCGGCAACCGG+AGG | + | chr5.3:18804983-18805002 | MS.gene78924:CDS | 60.0% | |
ACTGCTCGCAAATCCACCGG+AGG | + | chr5.3:18804920-18804939 | MS.gene78924:CDS | 60.0% | |
AGCTAGCCACCAAAGCTGCC+CGG | + | chr5.3:18804960-18804979 | MS.gene78924:CDS | 60.0% | |
AGCTGCCCGGAAATCTGCTC+CGG | + | chr5.3:18804973-18804992 | MS.gene78924:CDS | 60.0% | |
CGGAAATCTGCTCCGGCAAC+CGG | + | chr5.3:18804980-18804999 | MS.gene78924:CDS | 60.0% | |
CGGTTGCCGGAGCAGATTTC+CGG | - | chr5.3:18804982-18805001 | None:intergenic | 60.0% | |
CTCGCAGAATCAGAGGCGAG+AGG | + | chr5.3:18805284-18805303 | MS.gene78924:CDS | 60.0% | |
GGTTGCCGGAGCAGATTTCC+GGG | - | chr5.3:18804981-18805000 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 18804902 | 18805312 | 18804902 | ID=MS.gene78924 |
chr5.3 | mRNA | 18804902 | 18805312 | 18804902 | ID=MS.gene78924.t1;Parent=MS.gene78924 |
chr5.3 | exon | 18804902 | 18805312 | 18804902 | ID=MS.gene78924.t1.exon1;Parent=MS.gene78924.t1 |
chr5.3 | CDS | 18804902 | 18805312 | 18804902 | ID=cds.MS.gene78924.t1;Parent=MS.gene78924.t1 |
Gene Sequence |
Protein sequence |