Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027909.t1 | XP_004512510.2 | 100 | 136 | 0 | 0 | 1 | 136 | 104 | 239 | 5.80E-64 | 253.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027909.t1 | P68429 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.4e-66 | 253.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027909.t1 | A0A1S3TJX1 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.2e-64 | 253.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027909.t1 | MTR_7g059070 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene027909.t1 | MTR_5g029820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene027909.t1 | MTR_5g029770 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene027909.t1 | MTR_4g065990 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene027909.t1 | MTR_4g088150 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene027909.t1 | MTR_2g035230 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene027909.t1 | MTR_8g092720 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene027909.t1 | MTR_8g063500 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene027909.t1 | MTR_8g103245 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene027909.t1 | MTR_8g092820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene027909.t1 | MTR_7g013610 | 100.000 | 136 | 0 | 0 | 1 | 136 | 100 | 235 | 1.10e-95 | 275 |
MS.gene027909.t1 | MTR_4g097175 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene027909.t1 | MTR_1g023630 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene027909.t1 | MTR_8g061940 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene027909.t1 | MTR_8g099430 | 96.324 | 136 | 5 | 0 | 1 | 136 | 1 | 136 | 1.38e-92 | 264 |
MS.gene027909.t1 | MTR_4g097170 | 96.324 | 136 | 5 | 0 | 1 | 136 | 42 | 177 | 2.29e-91 | 262 |
MS.gene027909.t1 | MTR_2g082310 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene027909.t1 | MTR_2g082340 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene027909.t1 | MTR_2g082370 | 85.616 | 146 | 11 | 1 | 1 | 136 | 1 | 146 | 1.74e-82 | 238 |
MS.gene027909.t1 | MTR_2g082400 | 84.559 | 136 | 19 | 2 | 1 | 135 | 1 | 135 | 6.38e-75 | 219 |
MS.gene027909.t1 | MTR_7g013600 | 86.607 | 112 | 15 | 0 | 25 | 136 | 2 | 113 | 1.01e-65 | 195 |
MS.gene027909.t1 | MTR_7g023830 | 67.164 | 134 | 43 | 1 | 1 | 134 | 1 | 133 | 6.48e-56 | 171 |
MS.gene027909.t1 | MTR_1g023630 | 73.504 | 117 | 15 | 3 | 1 | 111 | 1 | 107 | 3.81e-52 | 160 |
MS.gene027909.t1 | MTR_5g024630 | 67.241 | 116 | 35 | 2 | 1 | 116 | 1 | 113 | 1.63e-45 | 144 |
MS.gene027909.t1 | MTR_7g023880 | 58.647 | 133 | 41 | 3 | 3 | 134 | 18 | 137 | 5.46e-43 | 139 |
MS.gene027909.t1 | MTR_5g024530 | 68.182 | 110 | 12 | 2 | 19 | 128 | 68 | 154 | 4.56e-42 | 137 |
MS.gene027909.t1 | MTR_0197s0100 | 100.000 | 66 | 0 | 0 | 1 | 66 | 1 | 66 | 1.45e-40 | 132 |
MS.gene027909.t1 | MTR_8g027840 | 55.102 | 98 | 43 | 1 | 37 | 133 | 28 | 125 | 4.83e-30 | 105 |
MS.gene027909.t1 | MTR_8g105150 | 53.846 | 91 | 10 | 1 | 37 | 127 | 11 | 69 | 1.43e-25 | 92.4 |
MS.gene027909.t1 | MTR_8g092740 | 97.368 | 38 | 1 | 0 | 99 | 136 | 118 | 155 | 4.60e-20 | 80.9 |
MS.gene027909.t1 | MTR_5g089120 | 76.190 | 42 | 10 | 0 | 82 | 123 | 6 | 47 | 6.07e-18 | 73.6 |
MS.gene027909.t1 | MTR_5g024600 | 62.963 | 54 | 20 | 0 | 1 | 54 | 1 | 54 | 1.76e-15 | 66.2 |
MS.gene027909.t1 | MTR_4g128040 | 75.676 | 37 | 9 | 0 | 79 | 115 | 20 | 56 | 3.38e-15 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027909.t1 | AT5G65360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene027909.t1 | AT5G10390 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene027909.t1 | AT5G10400 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene027909.t1 | AT3G27360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene027909.t1 | AT1G09200 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene027909.t1 | AT5G10980 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene027909.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene027909.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene027909.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene027909.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene027909.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene027909.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene027909.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 29 | 164 | 6.76e-93 | 266 |
MS.gene027909.t1 | AT5G65350 | 94.853 | 136 | 7 | 0 | 1 | 136 | 1 | 136 | 5.09e-91 | 260 |
MS.gene027909.t1 | AT1G75600 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 1.20e-89 | 256 |
MS.gene027909.t1 | AT1G13370 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 5.32e-89 | 254 |
MS.gene027909.t1 | AT1G19890 | 89.781 | 137 | 13 | 1 | 1 | 136 | 1 | 137 | 1.03e-83 | 241 |
MS.gene027909.t1 | AT5G12910 | 71.111 | 135 | 34 | 2 | 1 | 135 | 1 | 130 | 9.51e-67 | 198 |
MS.gene027909.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene027909.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene027909.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene027909.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
Find 37 sgRNAs with CRISPR-Local
Find 36 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGGTTGCCGGAGCAGATTTC+CGG | 0.243304 | 5.2:-18647320 | None:intergenic |
TTGGTGGCTAGCTGCTTTCT+TGG | 0.277587 | 5.2:-18647291 | None:intergenic |
TCACGAAGTGCAACGGTTCC+TGG | 0.291776 | 5.2:-18647372 | None:intergenic |
TTCTTGACTCCTCCGGTTGC+CGG | 0.293014 | 5.2:-18647333 | None:intergenic |
TGAGAAGCTCAGTGCTCTTC+TGG | 0.304985 | 5.2:-18647407 | None:intergenic |
GCTGCTGAAGCTTATCTTGT+TGG | 0.357332 | 5.2:+18647528 | MS.gene027909:CDS |
AGCAGATTTCCGGGCAGCTT+TGG | 0.390197 | 5.2:-18647310 | None:intergenic |
CGGAAATCTGCTCCGGCAAC+CGG | 0.392471 | 5.2:+18647321 | MS.gene027909:CDS |
GGTTGCCGGAGCAGATTTCC+GGG | 0.407337 | 5.2:-18647319 | None:intergenic |
CTTTCTTGGTGCCTTTCCTC+CGG | 0.425692 | 5.2:-18647277 | None:intergenic |
TTATCTTGTTGGTTTGTTTG+AGG | 0.428809 | 5.2:+18647539 | MS.gene027909:CDS |
CGATTTCACGAACAAGTCTC+TGG | 0.432729 | 5.2:-18647446 | None:intergenic |
AAACAGCGCTGCTTTGAAAT+CGG | 0.457546 | 5.2:-18647491 | None:intergenic |
AGATTTCCGGGCAGCTTTGG+TGG | 0.468887 | 5.2:-18647307 | None:intergenic |
AGCTAGCCACCAAAGCTGCC+CGG | 0.491500 | 5.2:+18647301 | MS.gene027909:CDS |
CGAGCAAGTTGAATATCCTT+AGG | 0.499677 | 5.2:-18647606 | None:intergenic |
GTGTGGCTTCTTGACTCCTC+CGG | 0.501667 | 5.2:-18647340 | None:intergenic |
AGCTGCCCGGAAATCTGCTC+CGG | 0.505877 | 5.2:+18647314 | MS.gene027909:CDS |
AGTAACTCTCTTAGCATGAA+TGG | 0.521941 | 5.2:-18647577 | None:intergenic |
AGAGCACTGAGCTTCTCATA+AGG | 0.531497 | 5.2:+18647412 | MS.gene027909:CDS |
TCGCAAATCCACCGGAGGAA+AGG | 0.532804 | 5.2:+18647266 | MS.gene027909:CDS |
TGTTTGCTTTGTACGAGCCA+TGG | 0.537743 | 5.2:-18647241 | None:intergenic |
GAGAGTTACTATCATGCCTA+AGG | 0.550012 | 5.2:+18647590 | MS.gene027909:CDS |
ACTTGTTCGTGAAATCGCTC+AGG | 0.551065 | 5.2:+18647452 | MS.gene027909:CDS |
TCTTGGTGCCTTTCCTCCGG+TGG | 0.556160 | 5.2:-18647274 | None:intergenic |
CAGTGCTCTTCTGGTACTTG+CGG | 0.579006 | 5.2:-18647398 | None:intergenic |
CAAACAGCTCGCAAATCCAC+CGG | 0.586123 | 5.2:+18647258 | MS.gene027909:CDS |
TCACGAACAAGTCTCTGGAA+TGG | 0.590006 | 5.2:-18647441 | None:intergenic |
CAACTTGCTCGCAGAATCAG+AGG | 0.592233 | 5.2:+18647618 | MS.gene027909:CDS |
AAATCTGCTCCGGCAACCGG+AGG | 0.607496 | 5.2:+18647324 | MS.gene027909:CDS |
TCGCAGAATCAGAGGCGAGA+GGG | 0.615698 | 5.2:+18647626 | MS.gene027909:CDS |
CTCGCAGAATCAGAGGCGAG+AGG | 0.629911 | 5.2:+18647625 | MS.gene027909:CDS |
AAGCCACACAGATTCCGTCC+AGG | 0.632383 | 5.2:+18647354 | MS.gene027909:CDS |
GCGGATCTCACGAAGTGCAA+CGG | 0.633057 | 5.2:-18647379 | None:intergenic |
GAAGTGCAACGGTTCCTGGA+CGG | 0.655834 | 5.2:-18647368 | None:intergenic |
GTTCCTGGACGGAATCTGTG+TGG | 0.669194 | 5.2:-18647357 | None:intergenic |
ACAGCTCGCAAATCCACCGG+AGG | 0.704783 | 5.2:+18647261 | MS.gene027909:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATCTTGTTGGTTTGTTTG+AGG | + | chr5.2:18647539-18647558 | MS.gene027909:CDS | 30.0% |
AGTAACTCTCTTAGCATGAA+TGG | - | chr5.2:18647580-18647599 | None:intergenic | 35.0% | |
GAGAGTTACTATCATGCCTA+AGG | + | chr5.2:18647590-18647609 | MS.gene027909:CDS | 40.0% | |
! | CGAGCAAGTTGAATATCCTT+AGG | - | chr5.2:18647609-18647628 | None:intergenic | 40.0% |
!! | AAACAGCGCTGCTTTGAAAT+CGG | - | chr5.2:18647494-18647513 | None:intergenic | 40.0% |
ACTTGTTCGTGAAATCGCTC+AGG | + | chr5.2:18647452-18647471 | MS.gene027909:CDS | 45.0% | |
CGATTTCACGAACAAGTCTC+TGG | - | chr5.2:18647449-18647468 | None:intergenic | 45.0% | |
GCTGCTGAAGCTTATCTTGT+TGG | + | chr5.2:18647528-18647547 | MS.gene027909:CDS | 45.0% | |
! | TCACGAACAAGTCTCTGGAA+TGG | - | chr5.2:18647444-18647463 | None:intergenic | 45.0% |
!! | AGAGCACTGAGCTTCTCATA+AGG | + | chr5.2:18647412-18647431 | MS.gene027909:CDS | 45.0% |
CAAACAGCTCGCAAATCCAC+CGG | + | chr5.2:18647258-18647277 | MS.gene027909:CDS | 50.0% | |
CAGTGCTCTTCTGGTACTTG+CGG | - | chr5.2:18647401-18647420 | None:intergenic | 50.0% | |
TGAGAAGCTCAGTGCTCTTC+TGG | - | chr5.2:18647410-18647429 | None:intergenic | 50.0% | |
! | CAACTTGCTCGCAGAATCAG+AGG | + | chr5.2:18647618-18647637 | MS.gene027909:CDS | 50.0% |
! | TTGGTGGCTAGCTGCTTTCT+TGG | - | chr5.2:18647294-18647313 | None:intergenic | 50.0% |
!! | CTTTCTTGGTGCCTTTCCTC+CGG | - | chr5.2:18647280-18647299 | None:intergenic | 50.0% |
AAGCCACACAGATTCCGTCC+AGG | + | chr5.2:18647354-18647373 | MS.gene027909:CDS | 55.0% | |
AGCAGATTTCCGGGCAGCTT+TGG | - | chr5.2:18647313-18647332 | None:intergenic | 55.0% | |
GAAGTGCAACGGTTCCTGGA+CGG | - | chr5.2:18647371-18647390 | None:intergenic | 55.0% | |
GCGGATCTCACGAAGTGCAA+CGG | - | chr5.2:18647382-18647401 | None:intergenic | 55.0% | |
GTGTGGCTTCTTGACTCCTC+CGG | - | chr5.2:18647343-18647362 | None:intergenic | 55.0% | |
GTTCCTGGACGGAATCTGTG+TGG | - | chr5.2:18647360-18647379 | None:intergenic | 55.0% | |
TCACGAAGTGCAACGGTTCC+TGG | - | chr5.2:18647375-18647394 | None:intergenic | 55.0% | |
TCGCAAATCCACCGGAGGAA+AGG | + | chr5.2:18647266-18647285 | MS.gene027909:CDS | 55.0% | |
TCGCAGAATCAGAGGCGAGA+GGG | + | chr5.2:18647626-18647645 | MS.gene027909:CDS | 55.0% | |
TTCTTGACTCCTCCGGTTGC+CGG | - | chr5.2:18647336-18647355 | None:intergenic | 55.0% | |
! | AGATTTCCGGGCAGCTTTGG+TGG | - | chr5.2:18647310-18647329 | None:intergenic | 55.0% |
AAATCTGCTCCGGCAACCGG+AGG | + | chr5.2:18647324-18647343 | MS.gene027909:CDS | 60.0% | |
ACAGCTCGCAAATCCACCGG+AGG | + | chr5.2:18647261-18647280 | MS.gene027909:CDS | 60.0% | |
AGCTAGCCACCAAAGCTGCC+CGG | + | chr5.2:18647301-18647320 | MS.gene027909:CDS | 60.0% | |
AGCTGCCCGGAAATCTGCTC+CGG | + | chr5.2:18647314-18647333 | MS.gene027909:CDS | 60.0% | |
CGGAAATCTGCTCCGGCAAC+CGG | + | chr5.2:18647321-18647340 | MS.gene027909:CDS | 60.0% | |
CGGTTGCCGGAGCAGATTTC+CGG | - | chr5.2:18647323-18647342 | None:intergenic | 60.0% | |
CTCGCAGAATCAGAGGCGAG+AGG | + | chr5.2:18647625-18647644 | MS.gene027909:CDS | 60.0% | |
GGTTGCCGGAGCAGATTTCC+GGG | - | chr5.2:18647322-18647341 | None:intergenic | 60.0% | |
!! | TCTTGGTGCCTTTCCTCCGG+TGG | - | chr5.2:18647277-18647296 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 18647243 | 18647653 | 18647243 | ID=MS.gene027909 |
chr5.2 | mRNA | 18647243 | 18647653 | 18647243 | ID=MS.gene027909.t1;Parent=MS.gene027909 |
chr5.2 | exon | 18647243 | 18647653 | 18647243 | ID=MS.gene027909.t1.exon1;Parent=MS.gene027909.t1 |
chr5.2 | CDS | 18647243 | 18647653 | 18647243 | ID=cds.MS.gene027909.t1;Parent=MS.gene027909.t1 |
Gene Sequence |
Protein sequence |