Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene049111.t1 | XP_004512510.2 | 100 | 136 | 0 | 0 | 1 | 136 | 104 | 239 | 5.80E-64 | 253.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene049111.t1 | P68429 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.4e-66 | 253.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene049111.t1 | A0A1S3TJX1 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.2e-64 | 253.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene049111.t1 | MTR_7g059070 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene049111.t1 | MTR_5g029820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene049111.t1 | MTR_5g029770 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene049111.t1 | MTR_4g065990 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene049111.t1 | MTR_4g088150 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene049111.t1 | MTR_2g035230 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene049111.t1 | MTR_8g092720 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene049111.t1 | MTR_8g063500 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene049111.t1 | MTR_8g103245 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene049111.t1 | MTR_8g092820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene049111.t1 | MTR_7g013610 | 100.000 | 136 | 0 | 0 | 1 | 136 | 100 | 235 | 1.10e-95 | 275 |
MS.gene049111.t1 | MTR_4g097175 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene049111.t1 | MTR_1g023630 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene049111.t1 | MTR_8g061940 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene049111.t1 | MTR_8g099430 | 96.324 | 136 | 5 | 0 | 1 | 136 | 1 | 136 | 1.38e-92 | 264 |
MS.gene049111.t1 | MTR_4g097170 | 96.324 | 136 | 5 | 0 | 1 | 136 | 42 | 177 | 2.29e-91 | 262 |
MS.gene049111.t1 | MTR_2g082310 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene049111.t1 | MTR_2g082340 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene049111.t1 | MTR_2g082370 | 85.616 | 146 | 11 | 1 | 1 | 136 | 1 | 146 | 1.74e-82 | 238 |
MS.gene049111.t1 | MTR_2g082400 | 84.559 | 136 | 19 | 2 | 1 | 135 | 1 | 135 | 6.38e-75 | 219 |
MS.gene049111.t1 | MTR_7g013600 | 86.607 | 112 | 15 | 0 | 25 | 136 | 2 | 113 | 1.01e-65 | 195 |
MS.gene049111.t1 | MTR_7g023830 | 67.164 | 134 | 43 | 1 | 1 | 134 | 1 | 133 | 6.48e-56 | 171 |
MS.gene049111.t1 | MTR_1g023630 | 73.504 | 117 | 15 | 3 | 1 | 111 | 1 | 107 | 3.81e-52 | 160 |
MS.gene049111.t1 | MTR_5g024630 | 67.241 | 116 | 35 | 2 | 1 | 116 | 1 | 113 | 1.63e-45 | 144 |
MS.gene049111.t1 | MTR_7g023880 | 58.647 | 133 | 41 | 3 | 3 | 134 | 18 | 137 | 5.46e-43 | 139 |
MS.gene049111.t1 | MTR_5g024530 | 68.182 | 110 | 12 | 2 | 19 | 128 | 68 | 154 | 4.56e-42 | 137 |
MS.gene049111.t1 | MTR_0197s0100 | 100.000 | 66 | 0 | 0 | 1 | 66 | 1 | 66 | 1.45e-40 | 132 |
MS.gene049111.t1 | MTR_8g027840 | 55.102 | 98 | 43 | 1 | 37 | 133 | 28 | 125 | 4.83e-30 | 105 |
MS.gene049111.t1 | MTR_8g105150 | 53.846 | 91 | 10 | 1 | 37 | 127 | 11 | 69 | 1.43e-25 | 92.4 |
MS.gene049111.t1 | MTR_8g092740 | 97.368 | 38 | 1 | 0 | 99 | 136 | 118 | 155 | 4.60e-20 | 80.9 |
MS.gene049111.t1 | MTR_5g089120 | 76.190 | 42 | 10 | 0 | 82 | 123 | 6 | 47 | 6.07e-18 | 73.6 |
MS.gene049111.t1 | MTR_5g024600 | 62.963 | 54 | 20 | 0 | 1 | 54 | 1 | 54 | 1.76e-15 | 66.2 |
MS.gene049111.t1 | MTR_4g128040 | 75.676 | 37 | 9 | 0 | 79 | 115 | 20 | 56 | 3.38e-15 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene049111.t1 | AT5G65360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene049111.t1 | AT5G10390 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene049111.t1 | AT5G10400 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene049111.t1 | AT3G27360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene049111.t1 | AT1G09200 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene049111.t1 | AT5G10980 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene049111.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene049111.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene049111.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene049111.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene049111.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene049111.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene049111.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 29 | 164 | 6.76e-93 | 266 |
MS.gene049111.t1 | AT5G65350 | 94.853 | 136 | 7 | 0 | 1 | 136 | 1 | 136 | 5.09e-91 | 260 |
MS.gene049111.t1 | AT1G75600 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 1.20e-89 | 256 |
MS.gene049111.t1 | AT1G13370 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 5.32e-89 | 254 |
MS.gene049111.t1 | AT1G19890 | 89.781 | 137 | 13 | 1 | 1 | 136 | 1 | 137 | 1.03e-83 | 241 |
MS.gene049111.t1 | AT5G12910 | 71.111 | 135 | 34 | 2 | 1 | 135 | 1 | 130 | 9.51e-67 | 198 |
MS.gene049111.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene049111.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene049111.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene049111.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
Find 41 sgRNAs with CRISPR-Local
Find 41 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGATTTCTCTAACCAATCTT+TGG | 0.224743 | 4.1:-2794473 | None:intergenic |
GCCGCTGAAGCTTATCTTGT+TGG | 0.348800 | 4.1:+2794555 | MS.gene049111:CDS |
TTGAATATCCTTAGGCATAA+TGG | 0.349539 | 4.1:-2794625 | None:intergenic |
AGCTGATTTCCGAGCGGCTT+TGG | 0.356003 | 4.1:-2794337 | None:intergenic |
TCACGAAGAGCAACAGTTCC+GGG | 0.371586 | 4.1:-2794399 | None:intergenic |
CTCACGAAGAGCAACAGTTC+CGG | 0.390727 | 4.1:-2794400 | None:intergenic |
TTCTTCACTCCTCCGGTGGC+CGG | 0.400280 | 4.1:-2794360 | None:intergenic |
GAAGCTTCCATTCCAAAGAT+TGG | 0.412914 | 4.1:+2794461 | MS.gene049111:CDS |
CTTGCAAGTTGAATATCCTT+AGG | 0.413826 | 4.1:-2794633 | None:intergenic |
AGGATTTCAAAACTGATCTC+AGG | 0.429009 | 4.1:+2794499 | MS.gene049111:CDS |
GGATTTGCGAGCGGTTTGTT+TGG | 0.441284 | 4.1:-2794280 | None:intergenic |
AGAGCACTGAGCTTCTAATC+AGG | 0.457889 | 4.1:+2794439 | MS.gene049111:CDS |
TTGGTGGCGAGTTGTTTCCT+TGG | 0.473034 | 4.1:-2794318 | None:intergenic |
GGCTTCTTGAAGAGCAGAAA+CGG | 0.474881 | 4.1:-2794535 | None:intergenic |
TTTCCTTGGAGCTTTGCCTC+CGG | 0.476973 | 4.1:-2794304 | None:intergenic |
CGGAAATCAGCTCCGGCCAC+CGG | 0.487022 | 4.1:+2794348 | MS.gene049111:CDS |
CCTTGGAGCTTTGCCTCCGG+TGG | 0.489182 | 4.1:-2794301 | None:intergenic |
TGATTTCCGAGCGGCTTTGG+TGG | 0.495094 | 4.1:-2794334 | None:intergenic |
AGCCGCTCGGAAATCAGCTC+CGG | 0.498921 | 4.1:+2794341 | MS.gene049111:CDS |
CAGTGCTCTTCTGATACTTA+CGG | 0.501233 | 4.1:-2794425 | None:intergenic |
GTGTGGCTTCTTCACTCCTC+CGG | 0.509508 | 4.1:-2794367 | None:intergenic |
TCTCTAACCAATCTTTGGAA+TGG | 0.520211 | 4.1:-2794468 | None:intergenic |
GAGAGTTACCATTATGCCTA+AGG | 0.535535 | 4.1:+2794617 | MS.gene049111:CDS |
AACTCGCCACCAAAGCCGCT+CGG | 0.570459 | 4.1:+2794328 | MS.gene049111:CDS |
CCACCGGAGGCAAAGCTCCA+AGG | 0.572363 | 4.1:+2794301 | MS.gene049111:CDS |
AAGAAGAATCAGAGGCGAGA+GGG | 0.597241 | 4.1:+2794653 | MS.gene049111:CDS |
TGGCTTCTTCACTCCTCCGG+TGG | 0.598450 | 4.1:-2794364 | None:intergenic |
AAATCAGCTCCGGCCACCGG+AGG | 0.599225 | 4.1:+2794351 | MS.gene049111:CDS |
ATTGGTTAGAGAAATCGCTC+AGG | 0.600201 | 4.1:+2794479 | MS.gene049111:CDS |
AGCATGAATAGCGCAAAGGT+TGG | 0.613099 | 4.1:-2794592 | None:intergenic |
CAAACCGCTCGCAAATCCAC+CGG | 0.629023 | 4.1:+2794285 | MS.gene049111:CDS |
GCCTCCGGTGGATTTGCGAG+CGG | 0.639769 | 4.1:-2794289 | None:intergenic |
ACCGCTCGCAAATCCACCGG+AGG | 0.648108 | 4.1:+2794288 | MS.gene049111:CDS |
CAAGAAGAATCAGAGGCGAG+AGG | 0.648850 | 4.1:+2794652 | MS.gene049111:CDS |
AAGCCACACAGATTCCGTCC+CGG | 0.653763 | 4.1:+2794381 | MS.gene049111:CDS |
TCTTAGCATGAATAGCGCAA+AGG | 0.658330 | 4.1:-2794596 | None:intergenic |
CAACTTGCAAGAAGAATCAG+AGG | 0.660238 | 4.1:+2794645 | MS.gene049111:CDS |
ACCAACAAGATAAGCTTCAG+CGG | 0.667251 | 4.1:-2794556 | None:intergenic |
GAAGAGCAACAGTTCCGGGA+CGG | 0.670696 | 4.1:-2794395 | None:intergenic |
GTTCCGGGACGGAATCTGTG+TGG | 0.693886 | 4.1:-2794384 | None:intergenic |
GGCCGGAGCTGATTTCCGAG+CGG | 0.718116 | 4.1:-2794343 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
TTGAATATCCTTAGGCATAA+TGG | - | chr4.1:2794628-2794647 | None:intergenic | 30.0% | |
AGGATTTCAAAACTGATCTC+AGG | + | chr4.1:2794499-2794518 | MS.gene049111:CDS | 35.0% | |
CGATTTCTCTAACCAATCTT+TGG | - | chr4.1:2794476-2794495 | None:intergenic | 35.0% | |
! | CTTGCAAGTTGAATATCCTT+AGG | - | chr4.1:2794636-2794655 | None:intergenic | 35.0% |
! | TCTCTAACCAATCTTTGGAA+TGG | - | chr4.1:2794471-2794490 | None:intergenic | 35.0% |
ACCAACAAGATAAGCTTCAG+CGG | - | chr4.1:2794559-2794578 | None:intergenic | 40.0% | |
ATTGGTTAGAGAAATCGCTC+AGG | + | chr4.1:2794479-2794498 | MS.gene049111:CDS | 40.0% | |
CAACTTGCAAGAAGAATCAG+AGG | + | chr4.1:2794645-2794664 | MS.gene049111:CDS | 40.0% | |
CAGTGCTCTTCTGATACTTA+CGG | - | chr4.1:2794428-2794447 | None:intergenic | 40.0% | |
GAAGCTTCCATTCCAAAGAT+TGG | + | chr4.1:2794461-2794480 | MS.gene049111:CDS | 40.0% | |
GAGAGTTACCATTATGCCTA+AGG | + | chr4.1:2794617-2794636 | MS.gene049111:CDS | 40.0% | |
TCTTAGCATGAATAGCGCAA+AGG | - | chr4.1:2794599-2794618 | None:intergenic | 40.0% | |
AAGAAGAATCAGAGGCGAGA+GGG | + | chr4.1:2794653-2794672 | MS.gene049111:CDS | 45.0% | |
AGCATGAATAGCGCAAAGGT+TGG | - | chr4.1:2794595-2794614 | None:intergenic | 45.0% | |
GGCTTCTTGAAGAGCAGAAA+CGG | - | chr4.1:2794538-2794557 | None:intergenic | 45.0% | |
!! | AGAGCACTGAGCTTCTAATC+AGG | + | chr4.1:2794439-2794458 | MS.gene049111:CDS | 45.0% |
CAAGAAGAATCAGAGGCGAG+AGG | + | chr4.1:2794652-2794671 | MS.gene049111:CDS | 50.0% | |
CTCACGAAGAGCAACAGTTC+CGG | - | chr4.1:2794403-2794422 | None:intergenic | 50.0% | |
GCCGCTGAAGCTTATCTTGT+TGG | + | chr4.1:2794555-2794574 | MS.gene049111:CDS | 50.0% | |
TCACGAAGAGCAACAGTTCC+GGG | - | chr4.1:2794402-2794421 | None:intergenic | 50.0% | |
TTTCCTTGGAGCTTTGCCTC+CGG | - | chr4.1:2794307-2794326 | None:intergenic | 50.0% | |
! | GGATTTGCGAGCGGTTTGTT+TGG | - | chr4.1:2794283-2794302 | None:intergenic | 50.0% |
!! | TTGGTGGCGAGTTGTTTCCT+TGG | - | chr4.1:2794321-2794340 | None:intergenic | 50.0% |
AAGCCACACAGATTCCGTCC+CGG | + | chr4.1:2794381-2794400 | MS.gene049111:CDS | 55.0% | |
CAAACCGCTCGCAAATCCAC+CGG | + | chr4.1:2794285-2794304 | MS.gene049111:CDS | 55.0% | |
GAAGAGCAACAGTTCCGGGA+CGG | - | chr4.1:2794398-2794417 | None:intergenic | 55.0% | |
GTGTGGCTTCTTCACTCCTC+CGG | - | chr4.1:2794370-2794389 | None:intergenic | 55.0% | |
! | AGCTGATTTCCGAGCGGCTT+TGG | - | chr4.1:2794340-2794359 | None:intergenic | 55.0% |
! | TGATTTCCGAGCGGCTTTGG+TGG | - | chr4.1:2794337-2794356 | None:intergenic | 55.0% |
AACTCGCCACCAAAGCCGCT+CGG | + | chr4.1:2794328-2794347 | MS.gene049111:CDS | 60.0% | |
AGCCGCTCGGAAATCAGCTC+CGG | + | chr4.1:2794341-2794360 | MS.gene049111:CDS | 60.0% | |
GTTCCGGGACGGAATCTGTG+TGG | - | chr4.1:2794387-2794406 | None:intergenic | 60.0% | |
TGGCTTCTTCACTCCTCCGG+TGG | - | chr4.1:2794367-2794386 | None:intergenic | 60.0% | |
TTCTTCACTCCTCCGGTGGC+CGG | - | chr4.1:2794363-2794382 | None:intergenic | 60.0% | |
AAATCAGCTCCGGCCACCGG+AGG | + | chr4.1:2794351-2794370 | MS.gene049111:CDS | 65.0% | |
ACCGCTCGCAAATCCACCGG+AGG | + | chr4.1:2794288-2794307 | MS.gene049111:CDS | 65.0% | |
CCACCGGAGGCAAAGCTCCA+AGG | + | chr4.1:2794301-2794320 | MS.gene049111:CDS | 65.0% | |
CCTTGGAGCTTTGCCTCCGG+TGG | - | chr4.1:2794304-2794323 | None:intergenic | 65.0% | |
CGGAAATCAGCTCCGGCCAC+CGG | + | chr4.1:2794348-2794367 | MS.gene049111:CDS | 65.0% | |
! | GCCTCCGGTGGATTTGCGAG+CGG | - | chr4.1:2794292-2794311 | None:intergenic | 65.0% |
! | GGCCGGAGCTGATTTCCGAG+CGG | - | chr4.1:2794346-2794365 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 2794270 | 2794680 | 2794270 | ID=MS.gene049111 |
chr4.1 | mRNA | 2794270 | 2794680 | 2794270 | ID=MS.gene049111.t1;Parent=MS.gene049111 |
chr4.1 | exon | 2794270 | 2794680 | 2794270 | ID=MS.gene049111.t1.exon1;Parent=MS.gene049111.t1 |
chr4.1 | CDS | 2794270 | 2794680 | 2794270 | ID=cds.MS.gene049111.t1;Parent=MS.gene049111.t1 |
Gene Sequence |
Protein sequence |