Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28434.t1 | XP_004512510.2 | 100 | 136 | 0 | 0 | 1 | 136 | 104 | 239 | 5.80E-64 | 253.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28434.t1 | P68429 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.4e-66 | 253.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28434.t1 | A0A1S3TJX1 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.2e-64 | 253.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055957 | MS.gene28434 | 0.815489 | 9.00E-52 | -1.69E-46 |
MS.gene056041 | MS.gene28434 | 0.837464 | 5.12E-57 | -1.69E-46 |
MS.gene05640 | MS.gene28434 | 0.812796 | 3.54E-51 | -1.69E-46 |
MS.gene059553 | MS.gene28434 | 0.838319 | 3.09E-57 | -1.69E-46 |
MS.gene060473 | MS.gene28434 | 0.808807 | 2.58E-50 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28434.t1 | MTR_7g059070 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28434.t1 | MTR_5g029820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28434.t1 | MTR_5g029770 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28434.t1 | MTR_4g065990 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28434.t1 | MTR_4g088150 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28434.t1 | MTR_2g035230 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28434.t1 | MTR_8g092720 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28434.t1 | MTR_8g063500 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28434.t1 | MTR_8g103245 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28434.t1 | MTR_8g092820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene28434.t1 | MTR_7g013610 | 100.000 | 136 | 0 | 0 | 1 | 136 | 100 | 235 | 1.10e-95 | 275 |
MS.gene28434.t1 | MTR_4g097175 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene28434.t1 | MTR_1g023630 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene28434.t1 | MTR_8g061940 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene28434.t1 | MTR_8g099430 | 96.324 | 136 | 5 | 0 | 1 | 136 | 1 | 136 | 1.38e-92 | 264 |
MS.gene28434.t1 | MTR_4g097170 | 96.324 | 136 | 5 | 0 | 1 | 136 | 42 | 177 | 2.29e-91 | 262 |
MS.gene28434.t1 | MTR_2g082310 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene28434.t1 | MTR_2g082340 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene28434.t1 | MTR_2g082370 | 85.616 | 146 | 11 | 1 | 1 | 136 | 1 | 146 | 1.74e-82 | 238 |
MS.gene28434.t1 | MTR_2g082400 | 84.559 | 136 | 19 | 2 | 1 | 135 | 1 | 135 | 6.38e-75 | 219 |
MS.gene28434.t1 | MTR_7g013600 | 86.607 | 112 | 15 | 0 | 25 | 136 | 2 | 113 | 1.01e-65 | 195 |
MS.gene28434.t1 | MTR_7g023830 | 67.164 | 134 | 43 | 1 | 1 | 134 | 1 | 133 | 6.48e-56 | 171 |
MS.gene28434.t1 | MTR_1g023630 | 73.504 | 117 | 15 | 3 | 1 | 111 | 1 | 107 | 3.81e-52 | 160 |
MS.gene28434.t1 | MTR_5g024630 | 67.241 | 116 | 35 | 2 | 1 | 116 | 1 | 113 | 1.63e-45 | 144 |
MS.gene28434.t1 | MTR_7g023880 | 58.647 | 133 | 41 | 3 | 3 | 134 | 18 | 137 | 5.46e-43 | 139 |
MS.gene28434.t1 | MTR_5g024530 | 68.182 | 110 | 12 | 2 | 19 | 128 | 68 | 154 | 4.56e-42 | 137 |
MS.gene28434.t1 | MTR_0197s0100 | 100.000 | 66 | 0 | 0 | 1 | 66 | 1 | 66 | 1.45e-40 | 132 |
MS.gene28434.t1 | MTR_8g027840 | 55.102 | 98 | 43 | 1 | 37 | 133 | 28 | 125 | 4.83e-30 | 105 |
MS.gene28434.t1 | MTR_8g105150 | 53.846 | 91 | 10 | 1 | 37 | 127 | 11 | 69 | 1.43e-25 | 92.4 |
MS.gene28434.t1 | MTR_8g092740 | 97.368 | 38 | 1 | 0 | 99 | 136 | 118 | 155 | 4.60e-20 | 80.9 |
MS.gene28434.t1 | MTR_5g089120 | 76.190 | 42 | 10 | 0 | 82 | 123 | 6 | 47 | 6.07e-18 | 73.6 |
MS.gene28434.t1 | MTR_5g024600 | 62.963 | 54 | 20 | 0 | 1 | 54 | 1 | 54 | 1.76e-15 | 66.2 |
MS.gene28434.t1 | MTR_4g128040 | 75.676 | 37 | 9 | 0 | 79 | 115 | 20 | 56 | 3.38e-15 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene28434.t1 | AT5G65360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene28434.t1 | AT5G10390 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene28434.t1 | AT5G10400 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene28434.t1 | AT3G27360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene28434.t1 | AT1G09200 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene28434.t1 | AT5G10980 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene28434.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene28434.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene28434.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene28434.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene28434.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene28434.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene28434.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 29 | 164 | 6.76e-93 | 266 |
MS.gene28434.t1 | AT5G65350 | 94.853 | 136 | 7 | 0 | 1 | 136 | 1 | 136 | 5.09e-91 | 260 |
MS.gene28434.t1 | AT1G75600 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 1.20e-89 | 256 |
MS.gene28434.t1 | AT1G13370 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 5.32e-89 | 254 |
MS.gene28434.t1 | AT1G19890 | 89.781 | 137 | 13 | 1 | 1 | 136 | 1 | 137 | 1.03e-83 | 241 |
MS.gene28434.t1 | AT5G12910 | 71.111 | 135 | 34 | 2 | 1 | 135 | 1 | 130 | 9.51e-67 | 198 |
MS.gene28434.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene28434.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene28434.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene28434.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
Find 36 sgRNAs with CRISPR-Local
Find 36 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTTGTGGCAAGCTGCTTC+CGG | 0.216226 | 4.4:-8735733 | None:intergenic |
CTTTGTGGCAAGCTGCTTCC+GGG | 0.250177 | 4.4:-8735732 | None:intergenic |
CAGTGCTGTTTCTGCTCTTC+AGG | 0.258870 | 4.4:+8735943 | MS.gene28434:CDS |
TCTTGCAAGTTGAATGTCCT+TGG | 0.320782 | 4.4:-8736047 | None:intergenic |
TCTCTCAAAGCAACTGTTCC+AGG | 0.333816 | 4.4:-8735812 | None:intergenic |
CTTGCAAGTTGAATGTCCTT+GGG | 0.355623 | 4.4:-8736046 | None:intergenic |
GGAAGCTGCTGAAGCTTACT+TGG | 0.372633 | 4.4:+8735964 | MS.gene28434:CDS |
TGATTTCCGAGCGGCCTTTG+TGG | 0.410237 | 4.4:-8735747 | None:intergenic |
GAGCAGAAACAGCACTGCTC+TGG | 0.422418 | 4.4:-8735937 | None:intergenic |
TTCTTCACTCCTCCGGTCGC+CGG | 0.442119 | 4.4:-8735773 | None:intergenic |
GACGTTGGAATGGAAGTTTA+CGG | 0.458530 | 4.4:-8735871 | None:intergenic |
CGGAAATCAGCTCCGGCGAC+CGG | 0.461897 | 4.4:+8735761 | MS.gene28434:CDS |
GGACTTGCGAGCTGTTTGCT+TGG | 0.471270 | 4.4:-8735693 | None:intergenic |
CCACCGGCGGCAAGGCTCCC+CGG | 0.480154 | 4.4:+8735714 | MS.gene28434:CDS |
GCTGCTGAAGCTTACTTGGT+TGG | 0.483475 | 4.4:+8735968 | MS.gene28434:CDS |
GGCCGCTCGGAAATCAGCTC+CGG | 0.498921 | 4.4:+8735754 | MS.gene28434:CDS |
GTGTGGCTTCTTCACTCCTC+CGG | 0.499925 | 4.4:-8735780 | None:intergenic |
CAGTGCTCTTCTGATACTTA+CGG | 0.501233 | 4.4:-8735838 | None:intergenic |
CTTCCGGGGAGCCTTGCCGC+CGG | 0.507682 | 4.4:-8735717 | None:intergenic |
AGCTTGCCACAAAGGCCGCT+CGG | 0.528264 | 4.4:+8735741 | MS.gene28434:CDS |
TCGCAAGTCCACCGGCGGCA+AGG | 0.530180 | 4.4:+8735706 | MS.gene28434:CDS |
CCGGGGAGCCTTGCCGCCGG+TGG | 0.548377 | 4.4:-8735714 | None:intergenic |
CCGGAAGCAGCTTGCCACAA+AGG | 0.551090 | 4.4:+8735733 | MS.gene28434:CDS |
TTTGTGGCAAGCTGCTTCCG+GGG | 0.553488 | 4.4:-8735731 | None:intergenic |
CAAACAGCTCGCAAGTCCAC+CGG | 0.573307 | 4.4:+8735698 | MS.gene28434:CDS |
AAGAAGAATCAGAGGCGAGA+GGG | 0.597241 | 4.4:+8736066 | MS.gene28434:CDS |
TCACGAACAAGACGTTGGAA+TGG | 0.598115 | 4.4:-8735881 | None:intergenic |
AAATCAGCTCCGGCGACCGG+AGG | 0.599225 | 4.4:+8735764 | MS.gene28434:CDS |
CGATTTCACGAACAAGACGT+TGG | 0.613448 | 4.4:-8735886 | None:intergenic |
GAGAGTTACAATCATGCCCA+AGG | 0.637894 | 4.4:+8736030 | MS.gene28434:CDS |
CAAGAAGAATCAGAGGCGAG+AGG | 0.648850 | 4.4:+8736065 | MS.gene28434:CDS |
ACAGCTCGCAAGTCCACCGG+CGG | 0.655092 | 4.4:+8735701 | MS.gene28434:CDS |
CAACTTGCAAGAAGAATCAG+AGG | 0.655500 | 4.4:+8736058 | MS.gene28434:CDS |
AAGCCACACAGATTCAGACC+TGG | 0.672238 | 4.4:+8735794 | MS.gene28434:CDS |
GTTCCAGGTCTGAATCTGTG+TGG | 0.688220 | 4.4:-8735797 | None:intergenic |
CGCCGGAGCTGATTTCCGAG+CGG | 0.728257 | 4.4:-8735756 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
CAACTTGCAAGAAGAATCAG+AGG | + | chr4.4:8736058-8736077 | MS.gene28434:CDS | 40.0% | |
CAGTGCTCTTCTGATACTTA+CGG | - | chr4.4:8735841-8735860 | None:intergenic | 40.0% | |
GACGTTGGAATGGAAGTTTA+CGG | - | chr4.4:8735874-8735893 | None:intergenic | 40.0% | |
! | CTTGCAAGTTGAATGTCCTT+GGG | - | chr4.4:8736049-8736068 | None:intergenic | 40.0% |
! | TCTTGCAAGTTGAATGTCCT+TGG | - | chr4.4:8736050-8736069 | None:intergenic | 40.0% |
AAGAAGAATCAGAGGCGAGA+GGG | + | chr4.4:8736066-8736085 | MS.gene28434:CDS | 45.0% | |
CGATTTCACGAACAAGACGT+TGG | - | chr4.4:8735889-8735908 | None:intergenic | 45.0% | |
GAGAGTTACAATCATGCCCA+AGG | + | chr4.4:8736030-8736049 | MS.gene28434:CDS | 45.0% | |
TCACGAACAAGACGTTGGAA+TGG | - | chr4.4:8735884-8735903 | None:intergenic | 45.0% | |
TCTCTCAAAGCAACTGTTCC+AGG | - | chr4.4:8735815-8735834 | None:intergenic | 45.0% | |
AAGCCACACAGATTCAGACC+TGG | + | chr4.4:8735794-8735813 | MS.gene28434:CDS | 50.0% | |
CAAGAAGAATCAGAGGCGAG+AGG | + | chr4.4:8736065-8736084 | MS.gene28434:CDS | 50.0% | |
GCTGCTGAAGCTTACTTGGT+TGG | + | chr4.4:8735968-8735987 | MS.gene28434:CDS | 50.0% | |
GGAAGCTGCTGAAGCTTACT+TGG | + | chr4.4:8735964-8735983 | MS.gene28434:CDS | 50.0% | |
GTTCCAGGTCTGAATCTGTG+TGG | - | chr4.4:8735800-8735819 | None:intergenic | 50.0% | |
!! | CAGTGCTGTTTCTGCTCTTC+AGG | + | chr4.4:8735943-8735962 | MS.gene28434:CDS | 50.0% |
CAAACAGCTCGCAAGTCCAC+CGG | + | chr4.4:8735698-8735717 | MS.gene28434:CDS | 55.0% | |
CCTTTGTGGCAAGCTGCTTC+CGG | - | chr4.4:8735736-8735755 | None:intergenic | 55.0% | |
CTTTGTGGCAAGCTGCTTCC+GGG | - | chr4.4:8735735-8735754 | None:intergenic | 55.0% | |
GAGCAGAAACAGCACTGCTC+TGG | - | chr4.4:8735940-8735959 | None:intergenic | 55.0% | |
GGACTTGCGAGCTGTTTGCT+TGG | - | chr4.4:8735696-8735715 | None:intergenic | 55.0% | |
GTGTGGCTTCTTCACTCCTC+CGG | - | chr4.4:8735783-8735802 | None:intergenic | 55.0% | |
TGATTTCCGAGCGGCCTTTG+TGG | - | chr4.4:8735750-8735769 | None:intergenic | 55.0% | |
TTTGTGGCAAGCTGCTTCCG+GGG | - | chr4.4:8735734-8735753 | None:intergenic | 55.0% | |
AGCTTGCCACAAAGGCCGCT+CGG | + | chr4.4:8735741-8735760 | MS.gene28434:CDS | 60.0% | |
CCGGAAGCAGCTTGCCACAA+AGG | + | chr4.4:8735733-8735752 | MS.gene28434:CDS | 60.0% | |
TTCTTCACTCCTCCGGTCGC+CGG | - | chr4.4:8735776-8735795 | None:intergenic | 60.0% | |
AAATCAGCTCCGGCGACCGG+AGG | + | chr4.4:8735764-8735783 | MS.gene28434:CDS | 65.0% | |
ACAGCTCGCAAGTCCACCGG+CGG | + | chr4.4:8735701-8735720 | MS.gene28434:CDS | 65.0% | |
CGGAAATCAGCTCCGGCGAC+CGG | + | chr4.4:8735761-8735780 | MS.gene28434:CDS | 65.0% | |
GGCCGCTCGGAAATCAGCTC+CGG | + | chr4.4:8735754-8735773 | MS.gene28434:CDS | 65.0% | |
! | CGCCGGAGCTGATTTCCGAG+CGG | - | chr4.4:8735759-8735778 | None:intergenic | 65.0% |
TCGCAAGTCCACCGGCGGCA+AGG | + | chr4.4:8735706-8735725 | MS.gene28434:CDS | 70.0% | |
CTTCCGGGGAGCCTTGCCGC+CGG | - | chr4.4:8735720-8735739 | None:intergenic | 75.0% | |
! | CCACCGGCGGCAAGGCTCCC+CGG | + | chr4.4:8735714-8735733 | MS.gene28434:CDS | 80.0% |
! | CCGGGGAGCCTTGCCGCCGG+TGG | - | chr4.4:8735717-8735736 | None:intergenic | 85.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 8735683 | 8736093 | 8735683 | ID=MS.gene28434 |
chr4.4 | mRNA | 8735683 | 8736093 | 8735683 | ID=MS.gene28434.t1;Parent=MS.gene28434 |
chr4.4 | exon | 8735683 | 8736093 | 8735683 | ID=MS.gene28434.t1.exon1;Parent=MS.gene28434.t1 |
chr4.4 | CDS | 8735683 | 8736093 | 8735683 | ID=cds.MS.gene28434.t1;Parent=MS.gene28434.t1 |
Gene Sequence |
Protein sequence |