Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017431.t1 | XP_004512510.2 | 100 | 136 | 0 | 0 | 1 | 136 | 104 | 239 | 5.80E-64 | 253.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017431.t1 | P68429 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.4e-66 | 253.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017431.t1 | A0A1S3TJX1 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.2e-64 | 253.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017431.t1 | MTR_7g059070 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene017431.t1 | MTR_5g029820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene017431.t1 | MTR_5g029770 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene017431.t1 | MTR_4g065990 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene017431.t1 | MTR_4g088150 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene017431.t1 | MTR_2g035230 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene017431.t1 | MTR_8g092720 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene017431.t1 | MTR_8g063500 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene017431.t1 | MTR_8g103245 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene017431.t1 | MTR_8g092820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene017431.t1 | MTR_7g013610 | 100.000 | 136 | 0 | 0 | 1 | 136 | 100 | 235 | 1.10e-95 | 275 |
MS.gene017431.t1 | MTR_4g097175 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene017431.t1 | MTR_1g023630 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene017431.t1 | MTR_8g061940 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene017431.t1 | MTR_8g099430 | 96.324 | 136 | 5 | 0 | 1 | 136 | 1 | 136 | 1.38e-92 | 264 |
MS.gene017431.t1 | MTR_4g097170 | 96.324 | 136 | 5 | 0 | 1 | 136 | 42 | 177 | 2.29e-91 | 262 |
MS.gene017431.t1 | MTR_2g082310 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene017431.t1 | MTR_2g082340 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene017431.t1 | MTR_2g082370 | 85.616 | 146 | 11 | 1 | 1 | 136 | 1 | 146 | 1.74e-82 | 238 |
MS.gene017431.t1 | MTR_2g082400 | 84.559 | 136 | 19 | 2 | 1 | 135 | 1 | 135 | 6.38e-75 | 219 |
MS.gene017431.t1 | MTR_7g013600 | 86.607 | 112 | 15 | 0 | 25 | 136 | 2 | 113 | 1.01e-65 | 195 |
MS.gene017431.t1 | MTR_7g023830 | 67.164 | 134 | 43 | 1 | 1 | 134 | 1 | 133 | 6.48e-56 | 171 |
MS.gene017431.t1 | MTR_1g023630 | 73.504 | 117 | 15 | 3 | 1 | 111 | 1 | 107 | 3.81e-52 | 160 |
MS.gene017431.t1 | MTR_5g024630 | 67.241 | 116 | 35 | 2 | 1 | 116 | 1 | 113 | 1.63e-45 | 144 |
MS.gene017431.t1 | MTR_7g023880 | 58.647 | 133 | 41 | 3 | 3 | 134 | 18 | 137 | 5.46e-43 | 139 |
MS.gene017431.t1 | MTR_5g024530 | 68.182 | 110 | 12 | 2 | 19 | 128 | 68 | 154 | 4.56e-42 | 137 |
MS.gene017431.t1 | MTR_0197s0100 | 100.000 | 66 | 0 | 0 | 1 | 66 | 1 | 66 | 1.45e-40 | 132 |
MS.gene017431.t1 | MTR_8g027840 | 55.102 | 98 | 43 | 1 | 37 | 133 | 28 | 125 | 4.83e-30 | 105 |
MS.gene017431.t1 | MTR_8g105150 | 53.846 | 91 | 10 | 1 | 37 | 127 | 11 | 69 | 1.43e-25 | 92.4 |
MS.gene017431.t1 | MTR_8g092740 | 97.368 | 38 | 1 | 0 | 99 | 136 | 118 | 155 | 4.60e-20 | 80.9 |
MS.gene017431.t1 | MTR_5g089120 | 76.190 | 42 | 10 | 0 | 82 | 123 | 6 | 47 | 6.07e-18 | 73.6 |
MS.gene017431.t1 | MTR_5g024600 | 62.963 | 54 | 20 | 0 | 1 | 54 | 1 | 54 | 1.76e-15 | 66.2 |
MS.gene017431.t1 | MTR_4g128040 | 75.676 | 37 | 9 | 0 | 79 | 115 | 20 | 56 | 3.38e-15 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017431.t1 | AT5G65360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene017431.t1 | AT5G10390 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene017431.t1 | AT5G10400 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene017431.t1 | AT3G27360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene017431.t1 | AT1G09200 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene017431.t1 | AT5G10980 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene017431.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene017431.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene017431.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene017431.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene017431.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene017431.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene017431.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 29 | 164 | 6.76e-93 | 266 |
MS.gene017431.t1 | AT5G65350 | 94.853 | 136 | 7 | 0 | 1 | 136 | 1 | 136 | 5.09e-91 | 260 |
MS.gene017431.t1 | AT1G75600 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 1.20e-89 | 256 |
MS.gene017431.t1 | AT1G13370 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 5.32e-89 | 254 |
MS.gene017431.t1 | AT1G19890 | 89.781 | 137 | 13 | 1 | 1 | 136 | 1 | 137 | 1.03e-83 | 241 |
MS.gene017431.t1 | AT5G12910 | 71.111 | 135 | 34 | 2 | 1 | 135 | 1 | 130 | 9.51e-67 | 198 |
MS.gene017431.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene017431.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene017431.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene017431.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
Find 34 sgRNAs with CRISPR-Local
Find 37 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAATTTCTCTAACCAATCTT+TGG | 0.237540 | 5.1:+61382769 | None:intergenic |
TCACGAAGAGCGACTGTTCC+TGG | 0.301860 | 5.1:+61382843 | None:intergenic |
GCAGCTGAAGCTTATCTTGT+TGG | 0.346066 | 5.1:-61382687 | MS.gene017431:CDS |
TTGAATATCCTTAGGCATAA+TGG | 0.349539 | 5.1:+61382617 | None:intergenic |
AGCTGATTTCCGAGCGGCTT+TGG | 0.356003 | 5.1:+61382905 | None:intergenic |
GAAGCTTCCTTTCCAAAGAT+TGG | 0.376805 | 5.1:-61382781 | MS.gene017431:CDS |
CGGAAATCAGCTCCGGCGAC+TGG | 0.383526 | 5.1:-61382894 | MS.gene017431:CDS |
GAGCGGAAACAGCGCTACTC+TGG | 0.433957 | 5.1:+61382718 | None:intergenic |
TTGGTGGCGAGCTGTTTCCT+TGG | 0.436325 | 5.1:+61382924 | None:intergenic |
TTCTTCACTCCTCCAGTCGC+CGG | 0.441465 | 5.1:+61382882 | None:intergenic |
AAGCCCTCTCGCCTCTGATT+CGG | 0.461144 | 5.1:+61382586 | None:intergenic |
AGGCATAATGGTAACTCTCT+TGG | 0.481302 | 5.1:+61382629 | None:intergenic |
GGCATGAATAGCACAAAGAT+TGG | 0.490509 | 5.1:+61382650 | None:intergenic |
TGATTTCCGAGCGGCTTTGG+TGG | 0.495094 | 5.1:+61382908 | None:intergenic |
CGAGCAAGTTGAATATCCTT+AGG | 0.498424 | 5.1:+61382609 | None:intergenic |
AGCCGCTCGGAAATCAGCTC+CGG | 0.498921 | 5.1:-61382901 | MS.gene017431:CDS |
AAACAGCGCTACTCTGGAAT+CGG | 0.503171 | 5.1:+61382724 | None:intergenic |
AGAGCACAGAGCTTCTCATA+AGG | 0.533669 | 5.1:-61382803 | MS.gene017431:CDS |
CAACTTGCTCGCCGAATCAG+AGG | 0.534605 | 5.1:-61382597 | MS.gene017431:CDS |
GAGAGTTACCATTATGCCTA+AGG | 0.538018 | 5.1:-61382625 | MS.gene017431:CDS |
ATTGGTTAGAGAAATTGCTC+AGG | 0.542546 | 5.1:-61382763 | MS.gene017431:CDS |
TCTCTAACCAATCTTTGGAA+AGG | 0.542941 | 5.1:+61382774 | None:intergenic |
AGCTCGCCACCAAAGCCGCT+CGG | 0.547091 | 5.1:-61382914 | MS.gene017431:CDS |
TTCAGCTGCTTCTTGAAGAG+CGG | 0.576635 | 5.1:+61382701 | None:intergenic |
TCGCCGAATCAGAGGCGAGA+GGG | 0.598725 | 5.1:-61382589 | MS.gene017431:CDS |
CAAACAGCAAGAAAATCCAC+CGG | 0.620184 | 5.1:-61382957 | MS.gene017431:CDS |
AAATCAGCTCCGGCGACTGG+AGG | 0.630058 | 5.1:-61382891 | MS.gene017431:CDS |
AAGCCACACAGATTCCGTCC+AGG | 0.632383 | 5.1:-61382861 | MS.gene017431:CDS |
CTCGCCGAATCAGAGGCGAG+AGG | 0.633846 | 5.1:-61382590 | MS.gene017431:CDS |
GAAGAGCGACTGTTCCTGGA+CGG | 0.668213 | 5.1:+61382847 | None:intergenic |
GTTCCTGGACGGAATCTGTG+TGG | 0.677012 | 5.1:+61382858 | None:intergenic |
CCACCGGAGGAAAAGCACCA+AGG | 0.683879 | 5.1:-61382941 | MS.gene017431:CDS |
ACAGCAAGAAAATCCACCGG+AGG | 0.684797 | 5.1:-61382954 | MS.gene017431:CDS |
CGCCGGAGCTGATTTCCGAG+CGG | 0.685230 | 5.1:+61382899 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
CAATTTCTCTAACCAATCTT+TGG | + | chr5.1:61382790-61382809 | None:intergenic | 30.0% | |
TTGAATATCCTTAGGCATAA+TGG | + | chr5.1:61382942-61382961 | None:intergenic | 30.0% | |
ATTGGTTAGAGAAATTGCTC+AGG | - | chr5.1:61382793-61382812 | MS.gene017431:CDS | 35.0% | |
! | TCTCTAACCAATCTTTGGAA+AGG | + | chr5.1:61382785-61382804 | None:intergenic | 35.0% |
!!! | GGATTTTCTTGCTGTTTGTT+TGG | + | chr5.1:61382597-61382616 | None:intergenic | 35.0% |
AGGCATAATGGTAACTCTCT+TGG | + | chr5.1:61382930-61382949 | None:intergenic | 40.0% | |
CAAACAGCAAGAAAATCCAC+CGG | - | chr5.1:61382599-61382618 | MS.gene017431:CDS | 40.0% | |
GAAGCTTCCTTTCCAAAGAT+TGG | - | chr5.1:61382775-61382794 | MS.gene017431:CDS | 40.0% | |
GAGAGTTACCATTATGCCTA+AGG | - | chr5.1:61382931-61382950 | MS.gene017431:CDS | 40.0% | |
GGCATGAATAGCACAAAGAT+TGG | + | chr5.1:61382909-61382928 | None:intergenic | 40.0% | |
! | CGAGCAAGTTGAATATCCTT+AGG | + | chr5.1:61382950-61382969 | None:intergenic | 40.0% |
AGAGCACAGAGCTTCTCATA+AGG | - | chr5.1:61382753-61382772 | MS.gene017431:CDS | 45.0% | |
GCAGCTGAAGCTTATCTTGT+TGG | - | chr5.1:61382869-61382888 | MS.gene017431:CDS | 45.0% | |
TTCAGCTGCTTCTTGAAGAG+CGG | + | chr5.1:61382858-61382877 | None:intergenic | 45.0% | |
!! | AAACAGCGCTACTCTGGAAT+CGG | + | chr5.1:61382835-61382854 | None:intergenic | 45.0% |
!!! | TTTCCTTGGTGCTTTTCCTC+CGG | + | chr5.1:61382621-61382640 | None:intergenic | 45.0% |
ACAGCAAGAAAATCCACCGG+AGG | - | chr5.1:61382602-61382621 | MS.gene017431:CDS | 50.0% | |
AAGCCACACAGATTCCGTCC+AGG | - | chr5.1:61382695-61382714 | MS.gene017431:CDS | 55.0% | |
AAGCCCTCTCGCCTCTGATT+CGG | + | chr5.1:61382973-61382992 | None:intergenic | 55.0% | |
GAAGAGCGACTGTTCCTGGA+CGG | + | chr5.1:61382712-61382731 | None:intergenic | 55.0% | |
GTTCCTGGACGGAATCTGTG+TGG | + | chr5.1:61382701-61382720 | None:intergenic | 55.0% | |
TCACGAAGAGCGACTGTTCC+TGG | + | chr5.1:61382716-61382735 | None:intergenic | 55.0% | |
TTCTTCACTCCTCCAGTCGC+CGG | + | chr5.1:61382677-61382696 | None:intergenic | 55.0% | |
! | AGCTGATTTCCGAGCGGCTT+TGG | + | chr5.1:61382654-61382673 | None:intergenic | 55.0% |
! | CAACTTGCTCGCCGAATCAG+AGG | - | chr5.1:61382959-61382978 | MS.gene017431:CDS | 55.0% |
! | TGATTTCCGAGCGGCTTTGG+TGG | + | chr5.1:61382651-61382670 | None:intergenic | 55.0% |
!! | TTGGTGGCGAGCTGTTTCCT+TGG | + | chr5.1:61382635-61382654 | None:intergenic | 55.0% |
AAATCAGCTCCGGCGACTGG+AGG | - | chr5.1:61382665-61382684 | MS.gene017431:CDS | 60.0% | |
AGCCGCTCGGAAATCAGCTC+CGG | - | chr5.1:61382655-61382674 | MS.gene017431:CDS | 60.0% | |
GAGCGGAAACAGCGCTACTC+TGG | + | chr5.1:61382841-61382860 | None:intergenic | 60.0% | |
TCGCCGAATCAGAGGCGAGA+GGG | - | chr5.1:61382967-61382986 | MS.gene017431:CDS | 60.0% | |
!! | CCACCGGAGGAAAAGCACCA+AGG | - | chr5.1:61382615-61382634 | MS.gene017431:CDS | 60.0% |
!!! | CCTTGGTGCTTTTCCTCCGG+TGG | + | chr5.1:61382618-61382637 | None:intergenic | 60.0% |
AGCTCGCCACCAAAGCCGCT+CGG | - | chr5.1:61382642-61382661 | MS.gene017431:CDS | 65.0% | |
CGGAAATCAGCTCCGGCGAC+TGG | - | chr5.1:61382662-61382681 | MS.gene017431:CDS | 65.0% | |
CTCGCCGAATCAGAGGCGAG+AGG | - | chr5.1:61382966-61382985 | MS.gene017431:CDS | 65.0% | |
! | CGCCGGAGCTGATTTCCGAG+CGG | + | chr5.1:61382660-61382679 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 61382584 | 61382994 | 61382584 | ID=MS.gene017431 |
chr5.1 | mRNA | 61382584 | 61382994 | 61382584 | ID=MS.gene017431.t1;Parent=MS.gene017431 |
chr5.1 | exon | 61382584 | 61382994 | 61382584 | ID=MS.gene017431.t1.exon1;Parent=MS.gene017431.t1 |
chr5.1 | CDS | 61382584 | 61382994 | 61382584 | ID=cds.MS.gene017431.t1;Parent=MS.gene017431.t1 |
Gene Sequence |
Protein sequence |