Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071851.t1 | XP_004512510.2 | 100 | 136 | 0 | 0 | 1 | 136 | 104 | 239 | 5.80E-64 | 253.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071851.t1 | P68429 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.4e-66 | 253.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071851.t1 | A0A1S3TJX1 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.2e-64 | 253.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049989 | MS.gene071851 | 0.803666 | 3.13E-49 | -1.69E-46 |
MS.gene050297 | MS.gene071851 | 0.805345 | 1.40E-49 | -1.69E-46 |
MS.gene051263 | MS.gene071851 | 0.827636 | 1.40E-54 | -1.69E-46 |
MS.gene051629 | MS.gene071851 | 0.836038 | 1.18E-56 | -1.69E-46 |
MS.gene055957 | MS.gene071851 | 0.828369 | 9.34E-55 | -1.69E-46 |
MS.gene056041 | MS.gene071851 | 0.80328 | 3.76E-49 | -1.69E-46 |
MS.gene05640 | MS.gene071851 | 0.816235 | 6.14E-52 | -1.69E-46 |
MS.gene058844 | MS.gene071851 | 0.832099 | 1.15E-55 | -1.69E-46 |
MS.gene059553 | MS.gene071851 | 0.826368 | 2.82E-54 | -1.69E-46 |
MS.gene060473 | MS.gene071851 | 0.805623 | 1.22E-49 | -1.69E-46 |
MS.gene060565 | MS.gene071851 | 0.80213 | 6.49E-49 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071851.t1 | MTR_7g059070 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene071851.t1 | MTR_5g029820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene071851.t1 | MTR_5g029770 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene071851.t1 | MTR_4g065990 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene071851.t1 | MTR_4g088150 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene071851.t1 | MTR_2g035230 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene071851.t1 | MTR_8g092720 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene071851.t1 | MTR_8g063500 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene071851.t1 | MTR_8g103245 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene071851.t1 | MTR_8g092820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene071851.t1 | MTR_7g013610 | 100.000 | 136 | 0 | 0 | 1 | 136 | 100 | 235 | 1.10e-95 | 275 |
MS.gene071851.t1 | MTR_4g097175 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene071851.t1 | MTR_1g023630 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene071851.t1 | MTR_8g061940 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene071851.t1 | MTR_8g099430 | 96.324 | 136 | 5 | 0 | 1 | 136 | 1 | 136 | 1.38e-92 | 264 |
MS.gene071851.t1 | MTR_4g097170 | 96.324 | 136 | 5 | 0 | 1 | 136 | 42 | 177 | 2.29e-91 | 262 |
MS.gene071851.t1 | MTR_2g082310 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene071851.t1 | MTR_2g082340 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene071851.t1 | MTR_2g082370 | 85.616 | 146 | 11 | 1 | 1 | 136 | 1 | 146 | 1.74e-82 | 238 |
MS.gene071851.t1 | MTR_2g082400 | 84.559 | 136 | 19 | 2 | 1 | 135 | 1 | 135 | 6.38e-75 | 219 |
MS.gene071851.t1 | MTR_7g013600 | 86.607 | 112 | 15 | 0 | 25 | 136 | 2 | 113 | 1.01e-65 | 195 |
MS.gene071851.t1 | MTR_7g023830 | 67.164 | 134 | 43 | 1 | 1 | 134 | 1 | 133 | 6.48e-56 | 171 |
MS.gene071851.t1 | MTR_1g023630 | 73.504 | 117 | 15 | 3 | 1 | 111 | 1 | 107 | 3.81e-52 | 160 |
MS.gene071851.t1 | MTR_5g024630 | 67.241 | 116 | 35 | 2 | 1 | 116 | 1 | 113 | 1.63e-45 | 144 |
MS.gene071851.t1 | MTR_7g023880 | 58.647 | 133 | 41 | 3 | 3 | 134 | 18 | 137 | 5.46e-43 | 139 |
MS.gene071851.t1 | MTR_5g024530 | 68.182 | 110 | 12 | 2 | 19 | 128 | 68 | 154 | 4.56e-42 | 137 |
MS.gene071851.t1 | MTR_0197s0100 | 100.000 | 66 | 0 | 0 | 1 | 66 | 1 | 66 | 1.45e-40 | 132 |
MS.gene071851.t1 | MTR_8g027840 | 55.102 | 98 | 43 | 1 | 37 | 133 | 28 | 125 | 4.83e-30 | 105 |
MS.gene071851.t1 | MTR_8g105150 | 53.846 | 91 | 10 | 1 | 37 | 127 | 11 | 69 | 1.43e-25 | 92.4 |
MS.gene071851.t1 | MTR_8g092740 | 97.368 | 38 | 1 | 0 | 99 | 136 | 118 | 155 | 4.60e-20 | 80.9 |
MS.gene071851.t1 | MTR_5g089120 | 76.190 | 42 | 10 | 0 | 82 | 123 | 6 | 47 | 6.07e-18 | 73.6 |
MS.gene071851.t1 | MTR_5g024600 | 62.963 | 54 | 20 | 0 | 1 | 54 | 1 | 54 | 1.76e-15 | 66.2 |
MS.gene071851.t1 | MTR_4g128040 | 75.676 | 37 | 9 | 0 | 79 | 115 | 20 | 56 | 3.38e-15 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene071851.t1 | AT5G65360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene071851.t1 | AT5G10390 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene071851.t1 | AT5G10400 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene071851.t1 | AT3G27360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene071851.t1 | AT1G09200 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene071851.t1 | AT5G10980 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene071851.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene071851.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene071851.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene071851.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene071851.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene071851.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene071851.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 29 | 164 | 6.76e-93 | 266 |
MS.gene071851.t1 | AT5G65350 | 94.853 | 136 | 7 | 0 | 1 | 136 | 1 | 136 | 5.09e-91 | 260 |
MS.gene071851.t1 | AT1G75600 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 1.20e-89 | 256 |
MS.gene071851.t1 | AT1G13370 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 5.32e-89 | 254 |
MS.gene071851.t1 | AT1G19890 | 89.781 | 137 | 13 | 1 | 1 | 136 | 1 | 137 | 1.03e-83 | 241 |
MS.gene071851.t1 | AT5G12910 | 71.111 | 135 | 34 | 2 | 1 | 135 | 1 | 130 | 9.51e-67 | 198 |
MS.gene071851.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene071851.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene071851.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene071851.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
Find 35 sgRNAs with CRISPR-Local
Find 40 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAGAAGCTCAGTGCTCTTC+TGG | 0.304985 | 2.2:+53585440 | None:intergenic |
TCACGAAGTGCGACGGTTCC+TGG | 0.318785 | 2.2:+53585475 | None:intergenic |
GCTGCTGAAGCTTATCTTGT+TGG | 0.357332 | 2.2:-53585319 | MS.gene071851:CDS |
GAAGCTTCCGTTTCAAAGAT+TGG | 0.362056 | 2.2:-53585413 | MS.gene071851:CDS |
GGATTTGCGGGCTGTTTGTT+TGG | 0.425629 | 2.2:+53585594 | None:intergenic |
CGGAAATCCGCTCCGGCGAC+CGG | 0.429737 | 2.2:-53585526 | MS.gene071851:CDS |
TTCTTCACTCCTCCGGTCGC+CGG | 0.442119 | 2.2:+53585514 | None:intergenic |
GAGCAGAAACAGCACTACTC+TGG | 0.498444 | 2.2:+53585350 | None:intergenic |
TCTCGAACCAATCTTTGAAA+CGG | 0.505611 | 2.2:+53585406 | None:intergenic |
CGACGGTTCCTGGACGGAAA+CGG | 0.511490 | 2.2:+53585485 | None:intergenic |
TTGTGCTATTCATGCTAAGA+GGG | 0.513784 | 2.2:-53585275 | MS.gene071851:CDS |
CACTCCTCCGGTCGCCGGAG+CGG | 0.515017 | 2.2:+53585519 | None:intergenic |
AGCCGCTCGGAAATCCGCTC+CGG | 0.515753 | 2.2:-53585533 | MS.gene071851:CDS |
CAAACAGCCCGCAAATCCAC+CGG | 0.524480 | 2.2:-53585589 | MS.gene071851:CDS |
AAGCCACACCGTTTCCGTCC+AGG | 0.524906 | 2.2:-53585493 | MS.gene071851:CDS |
GTGTGGCTTCTTCACTCCTC+CGG | 0.526132 | 2.2:+53585507 | None:intergenic |
AATTGCTCAGGATTTCAAAA+CGG | 0.529430 | 2.2:-53585383 | MS.gene071851:CDS |
ATTGGTTCGAGAAATTGCTC+AGG | 0.529480 | 2.2:-53585395 | MS.gene071851:CDS |
AGAGCACTGAGCTTCTCATA+AGG | 0.531497 | 2.2:-53585435 | MS.gene071851:CDS |
AAACAGCACTACTCTGGAAA+CGG | 0.532210 | 2.2:+53585356 | None:intergenic |
GAGGGTTACTATTATGCCTA+AGG | 0.533362 | 2.2:-53585257 | MS.gene071851:CDS |
CTCGCAAGCTGAATATCCTT+AGG | 0.533935 | 2.2:+53585241 | None:intergenic |
TTTGTGCTATTCATGCTAAG+AGG | 0.537531 | 2.2:-53585276 | MS.gene071851:CDS |
CAGTGCTCTTCTGGTACTTG+CGG | 0.559165 | 2.2:+53585449 | None:intergenic |
GAGAAGAATCAGAGGCGAAA+GGG | 0.568256 | 2.2:-53585221 | MS.gene071851:CDS |
CGAGAAGAATCAGAGGCGAA+AGG | 0.575054 | 2.2:-53585222 | MS.gene071851:CDS |
GCGGATTTCACGAAGTGCGA+CGG | 0.598942 | 2.2:+53585468 | None:intergenic |
AACTCGCCACAAAAGCCGCT+CGG | 0.605384 | 2.2:-53585546 | MS.gene071851:CDS |
AAATCCGCTCCGGCGACCGG+AGG | 0.609902 | 2.2:-53585523 | MS.gene071851:CDS |
GTTCCTGGACGGAAACGGTG+TGG | 0.651488 | 2.2:+53585490 | None:intergenic |
GAAGTGCGACGGTTCCTGGA+CGG | 0.655834 | 2.2:+53585479 | None:intergenic |
ACAGCCCGCAAATCCACCGG+CGG | 0.662314 | 2.2:-53585586 | MS.gene071851:CDS |
CAGCTTGCGAGAAGAATCAG+AGG | 0.668283 | 2.2:-53585229 | MS.gene071851:CDS |
CGCCGGAGCGGATTTCCGAG+CGG | 0.670325 | 2.2:+53585531 | None:intergenic |
TTTGTGGCGAGTTGTTTGCG+TGG | 0.711662 | 2.2:+53585556 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
AATTGCTCAGGATTTCAAAA+CGG | - | chr2.2:53585437-53585456 | MS.gene071851:CDS | 30.0% | |
! | TCTCGAACCAATCTTTGAAA+CGG | + | chr2.2:53585417-53585436 | None:intergenic | 35.0% |
! | TTGTGCTATTCATGCTAAGA+GGG | - | chr2.2:53585545-53585564 | MS.gene071851:CDS | 35.0% |
! | TTTGTGCTATTCATGCTAAG+AGG | - | chr2.2:53585544-53585563 | MS.gene071851:CDS | 35.0% |
GAAGCTTCCGTTTCAAAGAT+TGG | - | chr2.2:53585407-53585426 | MS.gene071851:CDS | 40.0% | |
GAGGGTTACTATTATGCCTA+AGG | - | chr2.2:53585563-53585582 | MS.gene071851:CDS | 40.0% | |
! | AAACAGCACTACTCTGGAAA+CGG | + | chr2.2:53585467-53585486 | None:intergenic | 40.0% |
!! | ATTGGTTCGAGAAATTGCTC+AGG | - | chr2.2:53585425-53585444 | MS.gene071851:CDS | 40.0% |
CTCGCAAGCTGAATATCCTT+AGG | + | chr2.2:53585582-53585601 | None:intergenic | 45.0% | |
GAGAAGAATCAGAGGCGAAA+GGG | - | chr2.2:53585599-53585618 | MS.gene071851:CDS | 45.0% | |
GCTGCTGAAGCTTATCTTGT+TGG | - | chr2.2:53585501-53585520 | MS.gene071851:CDS | 45.0% | |
!! | AGAGCACTGAGCTTCTCATA+AGG | - | chr2.2:53585385-53585404 | MS.gene071851:CDS | 45.0% |
CAGCTTGCGAGAAGAATCAG+AGG | - | chr2.2:53585591-53585610 | MS.gene071851:CDS | 50.0% | |
CAGTGCTCTTCTGGTACTTG+CGG | + | chr2.2:53585374-53585393 | None:intergenic | 50.0% | |
CGAGAAGAATCAGAGGCGAA+AGG | - | chr2.2:53585598-53585617 | MS.gene071851:CDS | 50.0% | |
GAGCAGAAACAGCACTACTC+TGG | + | chr2.2:53585473-53585492 | None:intergenic | 50.0% | |
TGAGAAGCTCAGTGCTCTTC+TGG | + | chr2.2:53585383-53585402 | None:intergenic | 50.0% | |
TTTGTGGCGAGTTGTTTGCG+TGG | + | chr2.2:53585267-53585286 | None:intergenic | 50.0% | |
! | GGATTTGCGGGCTGTTTGTT+TGG | + | chr2.2:53585229-53585248 | None:intergenic | 50.0% |
AACTCGCCACAAAAGCCGCT+CGG | - | chr2.2:53585274-53585293 | MS.gene071851:CDS | 55.0% | |
CAAACAGCCCGCAAATCCAC+CGG | - | chr2.2:53585231-53585250 | MS.gene071851:CDS | 55.0% | |
GCGGATTTCACGAAGTGCGA+CGG | + | chr2.2:53585355-53585374 | None:intergenic | 55.0% | |
GTGTGGCTTCTTCACTCCTC+CGG | + | chr2.2:53585316-53585335 | None:intergenic | 55.0% | |
! | GGATTTCCGAGCGGCTTTTG+TGG | + | chr2.2:53585283-53585302 | None:intergenic | 55.0% |
! | TTTGCGTGGTGCTTTTCCGC+CGG | + | chr2.2:53585253-53585272 | None:intergenic | 55.0% |
!! | CTTTTCCGCCGGTGGATTTG+CGG | + | chr2.2:53585242-53585261 | None:intergenic | 55.0% |
!! | TTTTCCGCCGGTGGATTTGC+GGG | + | chr2.2:53585241-53585260 | None:intergenic | 55.0% |
AAGCCACACCGTTTCCGTCC+AGG | - | chr2.2:53585327-53585346 | MS.gene071851:CDS | 60.0% | |
CGACGGTTCCTGGACGGAAA+CGG | + | chr2.2:53585338-53585357 | None:intergenic | 60.0% | |
GAAGTGCGACGGTTCCTGGA+CGG | + | chr2.2:53585344-53585363 | None:intergenic | 60.0% | |
GTTCCTGGACGGAAACGGTG+TGG | + | chr2.2:53585333-53585352 | None:intergenic | 60.0% | |
TCACGAAGTGCGACGGTTCC+TGG | + | chr2.2:53585348-53585367 | None:intergenic | 60.0% | |
TTCTTCACTCCTCCGGTCGC+CGG | + | chr2.2:53585309-53585328 | None:intergenic | 60.0% | |
ACAGCCCGCAAATCCACCGG+CGG | - | chr2.2:53585234-53585253 | MS.gene071851:CDS | 65.0% | |
AGCCGCTCGGAAATCCGCTC+CGG | - | chr2.2:53585287-53585306 | MS.gene071851:CDS | 65.0% | |
AAATCCGCTCCGGCGACCGG+AGG | - | chr2.2:53585297-53585316 | MS.gene071851:CDS | 70.0% | |
CGGAAATCCGCTCCGGCGAC+CGG | - | chr2.2:53585294-53585313 | MS.gene071851:CDS | 70.0% | |
! | CGCCGGAGCGGATTTCCGAG+CGG | + | chr2.2:53585292-53585311 | None:intergenic | 70.0% |
! | GCGTGGTGCTTTTCCGCCGG+TGG | + | chr2.2:53585250-53585269 | None:intergenic | 70.0% |
CACTCCTCCGGTCGCCGGAG+CGG | + | chr2.2:53585304-53585323 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 53585216 | 53585626 | 53585216 | ID=MS.gene071851 |
chr2.2 | mRNA | 53585216 | 53585626 | 53585216 | ID=MS.gene071851.t1;Parent=MS.gene071851 |
chr2.2 | exon | 53585216 | 53585626 | 53585216 | ID=MS.gene071851.t1.exon1;Parent=MS.gene071851.t1 |
chr2.2 | CDS | 53585216 | 53585626 | 53585216 | ID=cds.MS.gene071851.t1;Parent=MS.gene071851.t1 |
Gene Sequence |
Protein sequence |