Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059054.t1 | XP_004512510.2 | 100 | 136 | 0 | 0 | 1 | 136 | 104 | 239 | 5.80E-64 | 253.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059054.t1 | P68429 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.4e-66 | 253.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059054.t1 | A0A1S3TJX1 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.2e-64 | 253.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059054.t1 | MTR_7g059070 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene059054.t1 | MTR_5g029820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene059054.t1 | MTR_5g029770 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene059054.t1 | MTR_4g065990 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene059054.t1 | MTR_4g088150 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene059054.t1 | MTR_2g035230 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene059054.t1 | MTR_8g092720 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene059054.t1 | MTR_8g063500 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene059054.t1 | MTR_8g103245 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene059054.t1 | MTR_8g092820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
MS.gene059054.t1 | MTR_7g013610 | 100.000 | 136 | 0 | 0 | 1 | 136 | 100 | 235 | 1.10e-95 | 275 |
MS.gene059054.t1 | MTR_4g097175 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene059054.t1 | MTR_1g023630 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene059054.t1 | MTR_8g061940 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
MS.gene059054.t1 | MTR_8g099430 | 96.324 | 136 | 5 | 0 | 1 | 136 | 1 | 136 | 1.38e-92 | 264 |
MS.gene059054.t1 | MTR_4g097170 | 96.324 | 136 | 5 | 0 | 1 | 136 | 42 | 177 | 2.29e-91 | 262 |
MS.gene059054.t1 | MTR_2g082310 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene059054.t1 | MTR_2g082340 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
MS.gene059054.t1 | MTR_2g082370 | 85.616 | 146 | 11 | 1 | 1 | 136 | 1 | 146 | 1.74e-82 | 238 |
MS.gene059054.t1 | MTR_2g082400 | 84.559 | 136 | 19 | 2 | 1 | 135 | 1 | 135 | 6.38e-75 | 219 |
MS.gene059054.t1 | MTR_7g013600 | 86.607 | 112 | 15 | 0 | 25 | 136 | 2 | 113 | 1.01e-65 | 195 |
MS.gene059054.t1 | MTR_7g023830 | 67.164 | 134 | 43 | 1 | 1 | 134 | 1 | 133 | 6.48e-56 | 171 |
MS.gene059054.t1 | MTR_1g023630 | 73.504 | 117 | 15 | 3 | 1 | 111 | 1 | 107 | 3.81e-52 | 160 |
MS.gene059054.t1 | MTR_5g024630 | 67.241 | 116 | 35 | 2 | 1 | 116 | 1 | 113 | 1.63e-45 | 144 |
MS.gene059054.t1 | MTR_7g023880 | 58.647 | 133 | 41 | 3 | 3 | 134 | 18 | 137 | 5.46e-43 | 139 |
MS.gene059054.t1 | MTR_5g024530 | 68.182 | 110 | 12 | 2 | 19 | 128 | 68 | 154 | 4.56e-42 | 137 |
MS.gene059054.t1 | MTR_0197s0100 | 100.000 | 66 | 0 | 0 | 1 | 66 | 1 | 66 | 1.45e-40 | 132 |
MS.gene059054.t1 | MTR_8g027840 | 55.102 | 98 | 43 | 1 | 37 | 133 | 28 | 125 | 4.83e-30 | 105 |
MS.gene059054.t1 | MTR_8g105150 | 53.846 | 91 | 10 | 1 | 37 | 127 | 11 | 69 | 1.43e-25 | 92.4 |
MS.gene059054.t1 | MTR_8g092740 | 97.368 | 38 | 1 | 0 | 99 | 136 | 118 | 155 | 4.60e-20 | 80.9 |
MS.gene059054.t1 | MTR_5g089120 | 76.190 | 42 | 10 | 0 | 82 | 123 | 6 | 47 | 6.07e-18 | 73.6 |
MS.gene059054.t1 | MTR_5g024600 | 62.963 | 54 | 20 | 0 | 1 | 54 | 1 | 54 | 1.76e-15 | 66.2 |
MS.gene059054.t1 | MTR_4g128040 | 75.676 | 37 | 9 | 0 | 79 | 115 | 20 | 56 | 3.38e-15 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene059054.t1 | AT5G65360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene059054.t1 | AT5G10390 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene059054.t1 | AT5G10400 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene059054.t1 | AT3G27360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene059054.t1 | AT1G09200 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
MS.gene059054.t1 | AT5G10980 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene059054.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene059054.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene059054.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene059054.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene059054.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene059054.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
MS.gene059054.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 29 | 164 | 6.76e-93 | 266 |
MS.gene059054.t1 | AT5G65350 | 94.853 | 136 | 7 | 0 | 1 | 136 | 1 | 136 | 5.09e-91 | 260 |
MS.gene059054.t1 | AT1G75600 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 1.20e-89 | 256 |
MS.gene059054.t1 | AT1G13370 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 5.32e-89 | 254 |
MS.gene059054.t1 | AT1G19890 | 89.781 | 137 | 13 | 1 | 1 | 136 | 1 | 137 | 1.03e-83 | 241 |
MS.gene059054.t1 | AT5G12910 | 71.111 | 135 | 34 | 2 | 1 | 135 | 1 | 130 | 9.51e-67 | 198 |
MS.gene059054.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene059054.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene059054.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
MS.gene059054.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
Find 35 sgRNAs with CRISPR-Local
Find 40 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCACGAAGAGCAACGGTTCC+TGG | 0.297872 | 2.4:+55893198 | None:intergenic |
TGAGAAGCTCAGTGCTCTTC+TGG | 0.304985 | 2.4:+55893163 | None:intergenic |
GCTGCTGAAGCTTATCTTGT+TGG | 0.357332 | 2.4:-55893042 | MS.gene059054:CDS |
GAAGCTTCCGTTTCAAAGAT+TGG | 0.362056 | 2.4:-55893136 | MS.gene059054:CDS |
GGATTTGCGGGCTGTTTGTT+TGG | 0.425629 | 2.4:+55893317 | None:intergenic |
CGGAAATCCGCTCCGGCGAC+CGG | 0.429737 | 2.4:-55893249 | MS.gene059054:CDS |
TTCTTCACTCCTCCGGTCGC+CGG | 0.442119 | 2.4:+55893237 | None:intergenic |
CTCGCAAGTTGAATATCCTT+AGG | 0.495447 | 2.4:+55892964 | None:intergenic |
GAGCAGAAACAGCACTACTC+TGG | 0.498444 | 2.4:+55893073 | None:intergenic |
TCTCGAACCAATCTTTGAAA+CGG | 0.505611 | 2.4:+55893129 | None:intergenic |
TTGTGCTATTCATGCTAAGA+GGG | 0.513784 | 2.4:-55892998 | MS.gene059054:CDS |
CACTCCTCCGGTCGCCGGAG+CGG | 0.515017 | 2.4:+55893242 | None:intergenic |
AGCCGCTCGGAAATCCGCTC+CGG | 0.515753 | 2.4:-55893256 | MS.gene059054:CDS |
CAAACAGCCCGCAAATCCAC+CGG | 0.524480 | 2.4:-55893312 | MS.gene059054:CDS |
CAACGGTTCCTGGACGGAAA+CGG | 0.524770 | 2.4:+55893208 | None:intergenic |
AAGCCACACCGTTTCCGTCC+AGG | 0.524906 | 2.4:-55893216 | MS.gene059054:CDS |
GTGTGGCTTCTTCACTCCTC+CGG | 0.526132 | 2.4:+55893230 | None:intergenic |
AGAGCACTGAGCTTCTCATA+AGG | 0.531497 | 2.4:-55893158 | MS.gene059054:CDS |
AAACAGCACTACTCTGGAAA+CGG | 0.532210 | 2.4:+55893079 | None:intergenic |
GAGGGTTACTATTATGCCTA+AGG | 0.533362 | 2.4:-55892980 | MS.gene059054:CDS |
TTTGTGCTATTCATGCTAAG+AGG | 0.537531 | 2.4:-55892999 | MS.gene059054:CDS |
GCGGATTTCACGAAGAGCAA+CGG | 0.553291 | 2.4:+55893191 | None:intergenic |
CAGTGCTCTTCTGGTACTTG+CGG | 0.559165 | 2.4:+55893172 | None:intergenic |
GAGAAGAATCAGAGGCGAAA+GGG | 0.568256 | 2.4:-55892944 | MS.gene059054:CDS |
CGAGAAGAATCAGAGGCGAA+AGG | 0.575054 | 2.4:-55892945 | MS.gene059054:CDS |
AATCGCTCAGGATTTCAAAA+CGG | 0.576806 | 2.4:-55893106 | MS.gene059054:CDS |
AACTCGCCACAAAAGCCGCT+CGG | 0.605384 | 2.4:-55893269 | MS.gene059054:CDS |
AAATCCGCTCCGGCGACCGG+AGG | 0.609902 | 2.4:-55893246 | MS.gene059054:CDS |
ATTGGTTCGAGAAATCGCTC+AGG | 0.615789 | 2.4:-55893118 | MS.gene059054:CDS |
GAAGAGCAACGGTTCCTGGA+CGG | 0.646875 | 2.4:+55893202 | None:intergenic |
ACAGCCCGCAAATCCACCGG+CGG | 0.662314 | 2.4:-55893309 | MS.gene059054:CDS |
CAACTTGCGAGAAGAATCAG+AGG | 0.665987 | 2.4:-55892952 | MS.gene059054:CDS |
GTTCCTGGACGGAAACGGTG+TGG | 0.668414 | 2.4:+55893213 | None:intergenic |
CGCCGGAGCGGATTTCCGAG+CGG | 0.670325 | 2.4:+55893254 | None:intergenic |
TTTGTGGCGAGTTGTTTGCG+TGG | 0.711662 | 2.4:+55893279 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
AATCGCTCAGGATTTCAAAA+CGG | - | chr2.4:55893160-55893179 | MS.gene059054:CDS | 35.0% | |
! | TCTCGAACCAATCTTTGAAA+CGG | + | chr2.4:55893140-55893159 | None:intergenic | 35.0% |
! | TTGTGCTATTCATGCTAAGA+GGG | - | chr2.4:55893268-55893287 | MS.gene059054:CDS | 35.0% |
! | TTTGTGCTATTCATGCTAAG+AGG | - | chr2.4:55893267-55893286 | MS.gene059054:CDS | 35.0% |
GAAGCTTCCGTTTCAAAGAT+TGG | - | chr2.4:55893130-55893149 | MS.gene059054:CDS | 40.0% | |
GAGGGTTACTATTATGCCTA+AGG | - | chr2.4:55893286-55893305 | MS.gene059054:CDS | 40.0% | |
! | AAACAGCACTACTCTGGAAA+CGG | + | chr2.4:55893190-55893209 | None:intergenic | 40.0% |
! | CTCGCAAGTTGAATATCCTT+AGG | + | chr2.4:55893305-55893324 | None:intergenic | 40.0% |
CAACTTGCGAGAAGAATCAG+AGG | - | chr2.4:55893314-55893333 | MS.gene059054:CDS | 45.0% | |
GAGAAGAATCAGAGGCGAAA+GGG | - | chr2.4:55893322-55893341 | MS.gene059054:CDS | 45.0% | |
GCTGCTGAAGCTTATCTTGT+TGG | - | chr2.4:55893224-55893243 | MS.gene059054:CDS | 45.0% | |
!! | AGAGCACTGAGCTTCTCATA+AGG | - | chr2.4:55893108-55893127 | MS.gene059054:CDS | 45.0% |
!! | ATTGGTTCGAGAAATCGCTC+AGG | - | chr2.4:55893148-55893167 | MS.gene059054:CDS | 45.0% |
CAGTGCTCTTCTGGTACTTG+CGG | + | chr2.4:55893097-55893116 | None:intergenic | 50.0% | |
CGAGAAGAATCAGAGGCGAA+AGG | - | chr2.4:55893321-55893340 | MS.gene059054:CDS | 50.0% | |
GAGCAGAAACAGCACTACTC+TGG | + | chr2.4:55893196-55893215 | None:intergenic | 50.0% | |
GCGGATTTCACGAAGAGCAA+CGG | + | chr2.4:55893078-55893097 | None:intergenic | 50.0% | |
TGAGAAGCTCAGTGCTCTTC+TGG | + | chr2.4:55893106-55893125 | None:intergenic | 50.0% | |
TTTGTGGCGAGTTGTTTGCG+TGG | + | chr2.4:55892990-55893009 | None:intergenic | 50.0% | |
! | GGATTTGCGGGCTGTTTGTT+TGG | + | chr2.4:55892952-55892971 | None:intergenic | 50.0% |
AACTCGCCACAAAAGCCGCT+CGG | - | chr2.4:55892997-55893016 | MS.gene059054:CDS | 55.0% | |
CAAACAGCCCGCAAATCCAC+CGG | - | chr2.4:55892954-55892973 | MS.gene059054:CDS | 55.0% | |
CAACGGTTCCTGGACGGAAA+CGG | + | chr2.4:55893061-55893080 | None:intergenic | 55.0% | |
GAAGAGCAACGGTTCCTGGA+CGG | + | chr2.4:55893067-55893086 | None:intergenic | 55.0% | |
GTGTGGCTTCTTCACTCCTC+CGG | + | chr2.4:55893039-55893058 | None:intergenic | 55.0% | |
TCACGAAGAGCAACGGTTCC+TGG | + | chr2.4:55893071-55893090 | None:intergenic | 55.0% | |
! | GGATTTCCGAGCGGCTTTTG+TGG | + | chr2.4:55893006-55893025 | None:intergenic | 55.0% |
! | TTTGCGTGGTGCTTTTCCGC+CGG | + | chr2.4:55892976-55892995 | None:intergenic | 55.0% |
!! | CTTTTCCGCCGGTGGATTTG+CGG | + | chr2.4:55892965-55892984 | None:intergenic | 55.0% |
!! | TTTTCCGCCGGTGGATTTGC+GGG | + | chr2.4:55892964-55892983 | None:intergenic | 55.0% |
AAGCCACACCGTTTCCGTCC+AGG | - | chr2.4:55893050-55893069 | MS.gene059054:CDS | 60.0% | |
GTTCCTGGACGGAAACGGTG+TGG | + | chr2.4:55893056-55893075 | None:intergenic | 60.0% | |
TTCTTCACTCCTCCGGTCGC+CGG | + | chr2.4:55893032-55893051 | None:intergenic | 60.0% | |
ACAGCCCGCAAATCCACCGG+CGG | - | chr2.4:55892957-55892976 | MS.gene059054:CDS | 65.0% | |
AGCCGCTCGGAAATCCGCTC+CGG | - | chr2.4:55893010-55893029 | MS.gene059054:CDS | 65.0% | |
AAATCCGCTCCGGCGACCGG+AGG | - | chr2.4:55893020-55893039 | MS.gene059054:CDS | 70.0% | |
CGGAAATCCGCTCCGGCGAC+CGG | - | chr2.4:55893017-55893036 | MS.gene059054:CDS | 70.0% | |
! | CGCCGGAGCGGATTTCCGAG+CGG | + | chr2.4:55893015-55893034 | None:intergenic | 70.0% |
! | GCGTGGTGCTTTTCCGCCGG+TGG | + | chr2.4:55892973-55892992 | None:intergenic | 70.0% |
CACTCCTCCGGTCGCCGGAG+CGG | + | chr2.4:55893027-55893046 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 55892939 | 55893349 | 55892939 | ID=MS.gene059054 |
chr2.4 | mRNA | 55892939 | 55893349 | 55892939 | ID=MS.gene059054.t1;Parent=MS.gene059054 |
chr2.4 | exon | 55892939 | 55893349 | 55892939 | ID=MS.gene059054.t1.exon1;Parent=MS.gene059054.t1 |
chr2.4 | CDS | 55892939 | 55893349 | 55892939 | ID=cds.MS.gene059054.t1;Parent=MS.gene059054.t1 |
Gene Sequence |
Protein sequence |