Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78227.t1 | XP_004512510.2 | 100 | 136 | 0 | 0 | 1 | 136 | 104 | 239 | 5.80E-64 | 253.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78227.t1 | P68429 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 1.4e-66 | 253.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78227.t1 | A0A1S3TJX1 | 100.0 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.2e-64 | 253.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052367 | MS.gene78227 | 0.813216 | 2.86E-51 | -1.69E-46 |
| MS.gene053173 | MS.gene78227 | 0.83241 | 9.60E-56 | -1.69E-46 |
| MS.gene054551 | MS.gene78227 | 0.824843 | 6.48E-54 | -1.69E-46 |
| MS.gene055578 | MS.gene78227 | 0.835095 | 2.05E-56 | -1.69E-46 |
| MS.gene055957 | MS.gene78227 | 0.805906 | 1.06E-49 | -1.69E-46 |
| MS.gene056041 | MS.gene78227 | 0.804336 | 2.27E-49 | -1.69E-46 |
| MS.gene05640 | MS.gene78227 | 0.822859 | 1.89E-53 | -1.69E-46 |
| MS.gene057458 | MS.gene78227 | 0.826438 | 2.71E-54 | -1.69E-46 |
| MS.gene06093 | MS.gene78227 | 0.822735 | 2.02E-53 | -1.69E-46 |
| MS.gene061260 | MS.gene78227 | 0.824892 | 6.31E-54 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78227.t1 | MTR_7g059070 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
| MS.gene78227.t1 | MTR_5g029820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
| MS.gene78227.t1 | MTR_5g029770 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
| MS.gene78227.t1 | MTR_4g065990 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
| MS.gene78227.t1 | MTR_4g088150 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
| MS.gene78227.t1 | MTR_2g035230 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
| MS.gene78227.t1 | MTR_8g092720 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
| MS.gene78227.t1 | MTR_8g063500 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
| MS.gene78227.t1 | MTR_8g103245 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
| MS.gene78227.t1 | MTR_8g092820 | 100.000 | 136 | 0 | 0 | 1 | 136 | 1 | 136 | 4.79e-96 | 272 |
| MS.gene78227.t1 | MTR_7g013610 | 100.000 | 136 | 0 | 0 | 1 | 136 | 100 | 235 | 1.10e-95 | 275 |
| MS.gene78227.t1 | MTR_4g097175 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
| MS.gene78227.t1 | MTR_1g023630 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
| MS.gene78227.t1 | MTR_8g061940 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.29e-93 | 265 |
| MS.gene78227.t1 | MTR_8g099430 | 96.324 | 136 | 5 | 0 | 1 | 136 | 1 | 136 | 1.38e-92 | 264 |
| MS.gene78227.t1 | MTR_4g097170 | 96.324 | 136 | 5 | 0 | 1 | 136 | 42 | 177 | 2.29e-91 | 262 |
| MS.gene78227.t1 | MTR_2g082310 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
| MS.gene78227.t1 | MTR_2g082340 | 89.706 | 136 | 14 | 0 | 1 | 136 | 1 | 136 | 1.38e-86 | 248 |
| MS.gene78227.t1 | MTR_2g082370 | 85.616 | 146 | 11 | 1 | 1 | 136 | 1 | 146 | 1.74e-82 | 238 |
| MS.gene78227.t1 | MTR_2g082400 | 84.559 | 136 | 19 | 2 | 1 | 135 | 1 | 135 | 6.38e-75 | 219 |
| MS.gene78227.t1 | MTR_7g013600 | 86.607 | 112 | 15 | 0 | 25 | 136 | 2 | 113 | 1.01e-65 | 195 |
| MS.gene78227.t1 | MTR_7g023830 | 67.164 | 134 | 43 | 1 | 1 | 134 | 1 | 133 | 6.48e-56 | 171 |
| MS.gene78227.t1 | MTR_1g023630 | 73.504 | 117 | 15 | 3 | 1 | 111 | 1 | 107 | 3.81e-52 | 160 |
| MS.gene78227.t1 | MTR_5g024630 | 67.241 | 116 | 35 | 2 | 1 | 116 | 1 | 113 | 1.63e-45 | 144 |
| MS.gene78227.t1 | MTR_7g023880 | 58.647 | 133 | 41 | 3 | 3 | 134 | 18 | 137 | 5.46e-43 | 139 |
| MS.gene78227.t1 | MTR_5g024530 | 68.182 | 110 | 12 | 2 | 19 | 128 | 68 | 154 | 4.56e-42 | 137 |
| MS.gene78227.t1 | MTR_0197s0100 | 100.000 | 66 | 0 | 0 | 1 | 66 | 1 | 66 | 1.45e-40 | 132 |
| MS.gene78227.t1 | MTR_8g027840 | 55.102 | 98 | 43 | 1 | 37 | 133 | 28 | 125 | 4.83e-30 | 105 |
| MS.gene78227.t1 | MTR_8g105150 | 53.846 | 91 | 10 | 1 | 37 | 127 | 11 | 69 | 1.43e-25 | 92.4 |
| MS.gene78227.t1 | MTR_8g092740 | 97.368 | 38 | 1 | 0 | 99 | 136 | 118 | 155 | 4.60e-20 | 80.9 |
| MS.gene78227.t1 | MTR_5g089120 | 76.190 | 42 | 10 | 0 | 82 | 123 | 6 | 47 | 6.07e-18 | 73.6 |
| MS.gene78227.t1 | MTR_5g024600 | 62.963 | 54 | 20 | 0 | 1 | 54 | 1 | 54 | 1.76e-15 | 66.2 |
| MS.gene78227.t1 | MTR_4g128040 | 75.676 | 37 | 9 | 0 | 79 | 115 | 20 | 56 | 3.38e-15 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78227.t1 | AT5G65360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
| MS.gene78227.t1 | AT5G10390 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
| MS.gene78227.t1 | AT5G10400 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
| MS.gene78227.t1 | AT3G27360 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
| MS.gene78227.t1 | AT1G09200 | 99.265 | 136 | 1 | 0 | 1 | 136 | 1 | 136 | 1.55e-95 | 271 |
| MS.gene78227.t1 | AT5G10980 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
| MS.gene78227.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
| MS.gene78227.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
| MS.gene78227.t1 | AT4G40040 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
| MS.gene78227.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
| MS.gene78227.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
| MS.gene78227.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 1 | 136 | 3.44e-93 | 265 |
| MS.gene78227.t1 | AT4G40030 | 97.059 | 136 | 4 | 0 | 1 | 136 | 29 | 164 | 6.76e-93 | 266 |
| MS.gene78227.t1 | AT5G65350 | 94.853 | 136 | 7 | 0 | 1 | 136 | 1 | 136 | 5.09e-91 | 260 |
| MS.gene78227.t1 | AT1G75600 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 1.20e-89 | 256 |
| MS.gene78227.t1 | AT1G13370 | 93.382 | 136 | 9 | 0 | 1 | 136 | 1 | 136 | 5.32e-89 | 254 |
| MS.gene78227.t1 | AT1G19890 | 89.781 | 137 | 13 | 1 | 1 | 136 | 1 | 137 | 1.03e-83 | 241 |
| MS.gene78227.t1 | AT5G12910 | 71.111 | 135 | 34 | 2 | 1 | 135 | 1 | 130 | 9.51e-67 | 198 |
| MS.gene78227.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
| MS.gene78227.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
| MS.gene78227.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
| MS.gene78227.t1 | AT1G01370 | 53.982 | 113 | 49 | 2 | 24 | 134 | 63 | 174 | 2.86e-31 | 110 |
Find 33 sgRNAs with CRISPR-Local
Find 35 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCACTCCTCCGGTTGC+CGG | 0.280449 | 7.4:+44399610 | None:intergenic |
| AGCTGATTTCCGTGCGGCTT+TGG | 0.327301 | 7.4:+44399633 | None:intergenic |
| TCACGAAGCGCAACGGTTCC+AGG | 0.347602 | 7.4:+44399571 | None:intergenic |
| GCTGCTGAAGCTTATCTTGT+TGG | 0.357332 | 7.4:-44399415 | MS.gene78227:CDS |
| CGGAAATCAGCTCCGGCAAC+CGG | 0.402491 | 7.4:-44399622 | MS.gene78227:CDS |
| CTTGCAAGTTGAATATCCTT+AGG | 0.413826 | 7.4:+44399337 | None:intergenic |
| GGATTTGCGTGCTGTTTGTT+TGG | 0.426439 | 7.4:+44399690 | None:intergenic |
| CAAGAAGAATTCGCGGTGAA+AGG | 0.426749 | 7.4:-44399318 | MS.gene78227:CDS |
| TGATTTCCGTGCGGCTTTGG+TGG | 0.441149 | 7.4:+44399636 | None:intergenic |
| GTGTGGCTTCTTCACTCCTC+CGG | 0.476149 | 7.4:+44399603 | None:intergenic |
| TGGTGGCGAGTTGTTTGCGT+GGG | 0.485319 | 7.4:+44399653 | None:intergenic |
| AAGCCACACCGTTTCCGTCC+TGG | 0.490087 | 7.4:-44399589 | MS.gene78227:CDS |
| AGCCGCACGGAAATCAGCTC+CGG | 0.490847 | 7.4:-44399629 | MS.gene78227:CDS |
| AAGAAGAATTCGCGGTGAAA+GGG | 0.496217 | 7.4:-44399317 | MS.gene78227:CDS |
| CAACGGTTCCAGGACGGAAA+CGG | 0.513929 | 7.4:+44399581 | None:intergenic |
| GAGAGTTACTATTATGCCTA+AGG | 0.517685 | 7.4:-44399353 | MS.gene78227:CDS |
| CAACTTGCAAGAAGAATTCG+CGG | 0.524653 | 7.4:-44399325 | MS.gene78227:CDS |
| AGAGCACTGAGCTTCTGATA+AGG | 0.532730 | 7.4:-44399531 | MS.gene78227:CDS |
| TCTTGTTCGTGAAATCGCTC+AGG | 0.549771 | 7.4:-44399491 | MS.gene78227:CDS |
| CAAACAGCACGCAAATCCAC+CGG | 0.551449 | 7.4:-44399685 | MS.gene78227:CDS |
| CAGTGCTCTTCTGATACTTG+CGG | 0.560252 | 7.4:+44399545 | None:intergenic |
| TTGGTGGCGAGTTGTTTGCG+TGG | 0.598004 | 7.4:+44399652 | None:intergenic |
| TCACGAACAAGACGTTGGAA+TGG | 0.598115 | 7.4:+44399502 | None:intergenic |
| ACTGCTCTGAAATCTGAGAT+CGG | 0.610183 | 7.4:+44399459 | None:intergenic |
| CGATTTCACGAACAAGACGT+TGG | 0.613448 | 7.4:+44399497 | None:intergenic |
| GCGGATTTCACGAAGCGCAA+CGG | 0.618017 | 7.4:+44399564 | None:intergenic |
| AAATCAGCTCCGGCAACCGG+AGG | 0.629304 | 7.4:-44399619 | MS.gene78227:CDS |
| AACTCGCCACCAAAGCCGCA+CGG | 0.635817 | 7.4:-44399642 | MS.gene78227:CDS |
| GAAGCGCAACGGTTCCAGGA+CGG | 0.664033 | 7.4:+44399575 | None:intergenic |
| ACAGCACGCAAATCCACCGG+AGG | 0.682127 | 7.4:-44399682 | MS.gene78227:CDS |
| GTTCCAGGACGGAAACGGTG+TGG | 0.688993 | 7.4:+44399586 | None:intergenic |
| GGTGGCGAGTTGTTTGCGTG+GGG | 0.692652 | 7.4:+44399654 | None:intergenic |
| TGCCGGAGCTGATTTCCGTG+CGG | 0.737969 | 7.4:+44399627 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| GAGAGTTACTATTATGCCTA+AGG | - | chr7.4:44399659-44399678 | MS.gene78227:CDS | 35.0% | |
| ! | CTTGCAAGTTGAATATCCTT+AGG | + | chr7.4:44399678-44399697 | None:intergenic | 35.0% |
| AAGAAGAATTCGCGGTGAAA+GGG | - | chr7.4:44399695-44399714 | MS.gene78227:CDS | 40.0% | |
| CAACTTGCAAGAAGAATTCG+CGG | - | chr7.4:44399687-44399706 | MS.gene78227:CDS | 40.0% | |
| !! | ACTGCTCTGAAATCTGAGAT+CGG | + | chr7.4:44399556-44399575 | None:intergenic | 40.0% |
| CAAGAAGAATTCGCGGTGAA+AGG | - | chr7.4:44399694-44399713 | MS.gene78227:CDS | 45.0% | |
| CAGTGCTCTTCTGATACTTG+CGG | + | chr7.4:44399470-44399489 | None:intergenic | 45.0% | |
| CGATTTCACGAACAAGACGT+TGG | + | chr7.4:44399518-44399537 | None:intergenic | 45.0% | |
| GCTGCTGAAGCTTATCTTGT+TGG | - | chr7.4:44399597-44399616 | MS.gene78227:CDS | 45.0% | |
| TCACGAACAAGACGTTGGAA+TGG | + | chr7.4:44399513-44399532 | None:intergenic | 45.0% | |
| TCTTGTTCGTGAAATCGCTC+AGG | - | chr7.4:44399521-44399540 | MS.gene78227:CDS | 45.0% | |
| !! | AGAGCACTGAGCTTCTGATA+AGG | - | chr7.4:44399481-44399500 | MS.gene78227:CDS | 45.0% |
| !! | GGATTTGCGTGCTGTTTGTT+TGG | + | chr7.4:44399325-44399344 | None:intergenic | 45.0% |
| CAAACAGCACGCAAATCCAC+CGG | - | chr7.4:44399327-44399346 | MS.gene78227:CDS | 50.0% | |
| CAACGGTTCCAGGACGGAAA+CGG | + | chr7.4:44399434-44399453 | None:intergenic | 55.0% | |
| GCGGATTTCACGAAGCGCAA+CGG | + | chr7.4:44399451-44399470 | None:intergenic | 55.0% | |
| GTGTGGCTTCTTCACTCCTC+CGG | + | chr7.4:44399412-44399431 | None:intergenic | 55.0% | |
| TTCTTCACTCCTCCGGTTGC+CGG | + | chr7.4:44399405-44399424 | None:intergenic | 55.0% | |
| ! | AGCTGATTTCCGTGCGGCTT+TGG | + | chr7.4:44399382-44399401 | None:intergenic | 55.0% |
| ! | TGATTTCCGTGCGGCTTTGG+TGG | + | chr7.4:44399379-44399398 | None:intergenic | 55.0% |
| ! | TGGTGGCGAGTTGTTTGCGT+GGG | + | chr7.4:44399362-44399381 | None:intergenic | 55.0% |
| ! | TTTGCGTGGGGCTTTTCCTC+CGG | + | chr7.4:44399349-44399368 | None:intergenic | 55.0% |
| !! | TTGGTGGCGAGTTGTTTGCG+TGG | + | chr7.4:44399363-44399382 | None:intergenic | 55.0% |
| AAATCAGCTCCGGCAACCGG+AGG | - | chr7.4:44399393-44399412 | MS.gene78227:CDS | 60.0% | |
| AACTCGCCACCAAAGCCGCA+CGG | - | chr7.4:44399370-44399389 | MS.gene78227:CDS | 60.0% | |
| AAGCCACACCGTTTCCGTCC+TGG | - | chr7.4:44399423-44399442 | MS.gene78227:CDS | 60.0% | |
| ACAGCACGCAAATCCACCGG+AGG | - | chr7.4:44399330-44399349 | MS.gene78227:CDS | 60.0% | |
| AGCCGCACGGAAATCAGCTC+CGG | - | chr7.4:44399383-44399402 | MS.gene78227:CDS | 60.0% | |
| CGGAAATCAGCTCCGGCAAC+CGG | - | chr7.4:44399390-44399409 | MS.gene78227:CDS | 60.0% | |
| GAAGCGCAACGGTTCCAGGA+CGG | + | chr7.4:44399440-44399459 | None:intergenic | 60.0% | |
| GGTGGCGAGTTGTTTGCGTG+GGG | + | chr7.4:44399361-44399380 | None:intergenic | 60.0% | |
| GTTCCAGGACGGAAACGGTG+TGG | + | chr7.4:44399429-44399448 | None:intergenic | 60.0% | |
| TCACGAAGCGCAACGGTTCC+AGG | + | chr7.4:44399444-44399463 | None:intergenic | 60.0% | |
| ! | TGCCGGAGCTGATTTCCGTG+CGG | + | chr7.4:44399388-44399407 | None:intergenic | 60.0% |
| ! | GCGTGGGGCTTTTCCTCCGG+TGG | + | chr7.4:44399346-44399365 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 44399312 | 44399722 | 44399312 | ID=MS.gene78227 |
| chr7.4 | mRNA | 44399312 | 44399722 | 44399312 | ID=MS.gene78227.t1;Parent=MS.gene78227 |
| chr7.4 | exon | 44399312 | 44399722 | 44399312 | ID=MS.gene78227.t1.exon1;Parent=MS.gene78227.t1 |
| chr7.4 | CDS | 44399312 | 44399722 | 44399312 | ID=cds.MS.gene78227.t1;Parent=MS.gene78227.t1 |
| Gene Sequence |
| Protein sequence |