Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067812.t1 | XP_013449506.1 | 99.1 | 217 | 2 | 0 | 1 | 217 | 1 | 217 | 1.60E-116 | 428.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067812.t1 | A0A072U1E7 | 99.1 | 217 | 2 | 0 | 1 | 217 | 1 | 217 | 1.2e-116 | 428.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene067812 | 0.841407 | 4.84E-58 | -1.69E-46 |
| MS.gene049159 | MS.gene067812 | 0.831089 | 2.03E-55 | -1.69E-46 |
| MS.gene049254 | MS.gene067812 | 0.818191 | 2.23E-52 | -1.69E-46 |
| MS.gene049368 | MS.gene067812 | 0.808939 | 2.42E-50 | -1.69E-46 |
| MS.gene049452 | MS.gene067812 | 0.821832 | 3.27E-53 | -1.69E-46 |
| MS.gene049786 | MS.gene067812 | 0.807595 | 4.68E-50 | -1.69E-46 |
| MS.gene049801 | MS.gene067812 | 0.818851 | 1.58E-52 | -1.69E-46 |
| MS.gene049983 | MS.gene067812 | 0.85173 | 7.33E-61 | -1.69E-46 |
| MS.gene050105 | MS.gene067812 | 0.803901 | 2.79E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene067812 | 0.803695 | 3.08E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene067812 | 0.852209 | 5.36E-61 | -1.69E-46 |
| MS.gene050759 | MS.gene067812 | 0.818612 | 1.79E-52 | -1.69E-46 |
| MS.gene050826 | MS.gene067812 | 0.832018 | 1.20E-55 | -1.69E-46 |
| MS.gene050941 | MS.gene067812 | 0.841253 | 5.32E-58 | -1.69E-46 |
| MS.gene050962 | MS.gene067812 | 0.803801 | 2.93E-49 | -1.69E-46 |
| MS.gene051066 | MS.gene067812 | 0.803824 | 2.90E-49 | -1.69E-46 |
| MS.gene051122 | MS.gene067812 | 0.809254 | 2.07E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene067812 | 0.839927 | 1.18E-57 | -1.69E-46 |
| MS.gene051210 | MS.gene067812 | 0.82716 | 1.82E-54 | -1.69E-46 |
| MS.gene051368 | MS.gene067812 | 0.807218 | 5.63E-50 | -1.69E-46 |
| MS.gene051490 | MS.gene067812 | 0.80666 | 7.39E-50 | -1.69E-46 |
| MS.gene051541 | MS.gene067812 | 0.800376 | 1.48E-48 | -1.69E-46 |
| MS.gene051800 | MS.gene067812 | 0.831401 | 1.70E-55 | -1.69E-46 |
| MS.gene051924 | MS.gene067812 | -0.806745 | 7.09E-50 | -1.69E-46 |
| MS.gene052012 | MS.gene067812 | 0.804701 | 1.90E-49 | -1.69E-46 |
| MS.gene052052 | MS.gene067812 | 0.801348 | 9.39E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene067812 | 0.831919 | 1.27E-55 | -1.69E-46 |
| MS.gene052493 | MS.gene067812 | 0.810919 | 9.07E-51 | -1.69E-46 |
| MS.gene052516 | MS.gene067812 | 0.806056 | 9.90E-50 | -1.69E-46 |
| MS.gene052674 | MS.gene067812 | 0.843432 | 1.41E-58 | -1.69E-46 |
| MS.gene052675 | MS.gene067812 | 0.841914 | 3.56E-58 | -1.69E-46 |
| MS.gene052677 | MS.gene067812 | 0.847009 | 1.52E-59 | -1.69E-46 |
| MS.gene052896 | MS.gene067812 | 0.801062 | 1.07E-48 | -1.69E-46 |
| MS.gene053079 | MS.gene067812 | 0.809798 | 1.58E-50 | -1.69E-46 |
| MS.gene05350 | MS.gene067812 | 0.809627 | 1.72E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene067812 | 0.816804 | 4.58E-52 | -1.69E-46 |
| MS.gene054291 | MS.gene067812 | -0.807447 | 5.03E-50 | -1.69E-46 |
| MS.gene054379 | MS.gene067812 | 0.807452 | 5.02E-50 | -1.69E-46 |
| MS.gene054467 | MS.gene067812 | 0.816944 | 4.26E-52 | -1.69E-46 |
| MS.gene054468 | MS.gene067812 | 0.817388 | 3.38E-52 | -1.69E-46 |
| MS.gene054479 | MS.gene067812 | 0.852676 | 3.95E-61 | -1.69E-46 |
| MS.gene054576 | MS.gene067812 | 0.806046 | 9.95E-50 | -1.69E-46 |
| MS.gene054641 | MS.gene067812 | 0.827185 | 1.80E-54 | -1.69E-46 |
| MS.gene05517 | MS.gene067812 | 0.808859 | 2.52E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene067812 | 0.823535 | 1.31E-53 | -1.69E-46 |
| MS.gene055701 | MS.gene067812 | 0.801399 | 9.17E-49 | -1.69E-46 |
| MS.gene055864 | MS.gene067812 | 0.866698 | 2.36E-65 | -1.69E-46 |
| MS.gene055926 | MS.gene067812 | 0.83146 | 1.65E-55 | -1.69E-46 |
| MS.gene056045 | MS.gene067812 | 0.806675 | 7.33E-50 | -1.69E-46 |
| MS.gene056174 | MS.gene067812 | 0.820277 | 7.47E-53 | -1.69E-46 |
| MS.gene056181 | MS.gene067812 | 0.816975 | 4.19E-52 | -1.69E-46 |
| MS.gene056390 | MS.gene067812 | 0.801316 | 9.54E-49 | -1.69E-46 |
| MS.gene056480 | MS.gene067812 | 0.84385 | 1.09E-58 | -1.69E-46 |
| MS.gene056506 | MS.gene067812 | 0.8026 | 5.19E-49 | -1.69E-46 |
| MS.gene056699 | MS.gene067812 | 0.804255 | 2.36E-49 | -1.69E-46 |
| MS.gene056831 | MS.gene067812 | 0.836521 | 8.91E-57 | -1.69E-46 |
| MS.gene05690 | MS.gene067812 | 0.802213 | 6.24E-49 | -1.69E-46 |
| MS.gene057034 | MS.gene067812 | 0.814357 | 1.61E-51 | -1.69E-46 |
| MS.gene057208 | MS.gene067812 | 0.820321 | 7.30E-53 | -1.69E-46 |
| MS.gene057360 | MS.gene067812 | 0.805212 | 1.49E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene067812 | 0.819129 | 1.37E-52 | -1.69E-46 |
| MS.gene058010 | MS.gene067812 | 0.8003 | 1.54E-48 | -1.69E-46 |
| MS.gene058081 | MS.gene067812 | 0.82517 | 5.43E-54 | -1.69E-46 |
| MS.gene058223 | MS.gene067812 | -0.843033 | 1.80E-58 | -1.69E-46 |
| MS.gene058429 | MS.gene067812 | 0.82461 | 7.35E-54 | -1.69E-46 |
| MS.gene058979 | MS.gene067812 | 0.801541 | 8.58E-49 | -1.69E-46 |
| MS.gene05897 | MS.gene067812 | 0.81575 | 7.88E-52 | -1.69E-46 |
| MS.gene059283 | MS.gene067812 | 0.85522 | 7.30E-62 | -1.69E-46 |
| MS.gene059439 | MS.gene067812 | 0.810816 | 9.55E-51 | -1.69E-46 |
| MS.gene059842 | MS.gene067812 | 0.811813 | 5.80E-51 | -1.69E-46 |
| MS.gene059965 | MS.gene067812 | 0.808169 | 3.53E-50 | -1.69E-46 |
| MS.gene060011 | MS.gene067812 | 0.81133 | 7.39E-51 | -1.69E-46 |
| MS.gene060296 | MS.gene067812 | 0.818283 | 2.13E-52 | -1.69E-46 |
| MS.gene060322 | MS.gene067812 | 0.827417 | 1.58E-54 | -1.69E-46 |
| MS.gene060373 | MS.gene067812 | 0.818235 | 2.18E-52 | -1.69E-46 |
| MS.gene060435 | MS.gene067812 | 0.817574 | 3.07E-52 | -1.69E-46 |
| MS.gene06052 | MS.gene067812 | 0.887986 | 8.80E-73 | -1.69E-46 |
| MS.gene060637 | MS.gene067812 | 0.811661 | 6.26E-51 | -1.69E-46 |
| MS.gene060777 | MS.gene067812 | 0.811872 | 5.63E-51 | -1.69E-46 |
| MS.gene060802 | MS.gene067812 | 0.834655 | 2.64E-56 | -1.69E-46 |
| MS.gene060803 | MS.gene067812 | 0.820132 | 8.06E-53 | -1.69E-46 |
| MS.gene060850 | MS.gene067812 | 0.800243 | 1.58E-48 | -1.69E-46 |
| MS.gene060851 | MS.gene067812 | 0.813367 | 2.65E-51 | -1.69E-46 |
| MS.gene060852 | MS.gene067812 | 0.812361 | 4.41E-51 | -1.69E-46 |
| MS.gene060932 | MS.gene067812 | 0.881222 | 2.87E-70 | -1.69E-46 |
| MS.gene06121 | MS.gene067812 | 0.846264 | 2.42E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067812.t1 | MTR_7g085680 | 99.539 | 217 | 1 | 0 | 1 | 217 | 1 | 217 | 2.30e-162 | 447 |
| MS.gene067812.t1 | MTR_1g016800 | 38.645 | 251 | 106 | 8 | 12 | 217 | 46 | 293 | 5.67e-44 | 149 |
| MS.gene067812.t1 | MTR_8g070650 | 38.528 | 231 | 108 | 9 | 17 | 217 | 27 | 253 | 6.94e-32 | 116 |
| MS.gene067812.t1 | MTR_6g083920 | 27.442 | 215 | 113 | 4 | 20 | 195 | 17 | 227 | 1.12e-14 | 70.9 |
| MS.gene067812.t1 | MTR_5g056110 | 31.959 | 97 | 60 | 1 | 111 | 201 | 123 | 219 | 1.76e-11 | 62.0 |
| MS.gene067812.t1 | MTR_6g008660 | 28.169 | 213 | 112 | 8 | 20 | 201 | 41 | 243 | 8.39e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067812.t1 | AT1G55340 | 55.856 | 222 | 71 | 9 | 4 | 217 | 3 | 205 | 1.46e-69 | 211 |
| MS.gene067812.t1 | AT1G55340 | 54.545 | 220 | 67 | 7 | 4 | 217 | 3 | 195 | 2.25e-67 | 206 |
| MS.gene067812.t1 | AT3G03880 | 54.028 | 211 | 70 | 7 | 13 | 217 | 4 | 193 | 2.64e-63 | 195 |
| MS.gene067812.t1 | AT4G20300 | 43.949 | 157 | 66 | 5 | 83 | 217 | 196 | 352 | 8.70e-30 | 113 |
| MS.gene067812.t1 | AT4G20300 | 43.885 | 139 | 58 | 4 | 83 | 201 | 196 | 334 | 5.54e-26 | 103 |
Find 53 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTACCAATAAGCTTCTT+TGG | 0.237998 | 7.1:-19429360 | None:intergenic |
| CTGTTGCCTTACATGCTCTT+TGG | 0.238559 | 7.1:-19428315 | None:intergenic |
| GATCATCCAAAGAAGCTTAT+TGG | 0.251976 | 7.1:+19429354 | MS.gene067812:CDS |
| ATCAGAAGAAAGCTTAATTC+TGG | 0.302031 | 7.1:+19428433 | MS.gene067812:CDS |
| GTCAAGAGAGATATGAAGTT+AGG | 0.367836 | 7.1:+19429541 | MS.gene067812:CDS |
| TAAGCTTCTTTGGATGATCT+TGG | 0.381733 | 7.1:-19429350 | None:intergenic |
| AACAACCTTGTGAGACGATT+AGG | 0.386278 | 7.1:-19428523 | None:intergenic |
| TCTTCTTGCAGTGGGGAAAC+AGG | 0.395699 | 7.1:+19428347 | MS.gene067812:CDS |
| CGGATTTCAACTAGGCTTAA+CGG | 0.415814 | 7.1:+19428403 | MS.gene067812:CDS |
| TCAAGAGAGATATGAAGTTA+GGG | 0.417350 | 7.1:+19429542 | MS.gene067812:CDS |
| TGTTTACAGTTGGTAAGTCC+TGG | 0.420464 | 7.1:+19429498 | MS.gene067812:intron |
| CCCATAGCCTTCAATCCTCT+TGG | 0.424567 | 7.1:-19429692 | None:intergenic |
| GAGGAACCAAAGAGCATGTA+AGG | 0.432240 | 7.1:+19428309 | MS.gene067812:CDS |
| GGAGTGGAGAATCATCGTTC+TGG | 0.453670 | 7.1:+19428454 | MS.gene067812:CDS |
| GGCCGGAGATAACAGAAAAT+CGG | 0.460576 | 7.1:+19429126 | MS.gene067812:CDS |
| CCAAGAGGATTGAAGGCTAT+GGG | 0.481069 | 7.1:+19429692 | MS.gene067812:CDS |
| GCAGAGGCCAAGAGGATTGA+AGG | 0.486507 | 7.1:+19429685 | MS.gene067812:intron |
| GCCAAGAGGATTGAAGGCTA+TGG | 0.494932 | 7.1:+19429691 | MS.gene067812:CDS |
| AACATCGCAAGTGCCTTTAC+CGG | 0.498467 | 7.1:-19429203 | None:intergenic |
| AAGATCCTCGGATTTCAACT+AGG | 0.502257 | 7.1:+19428395 | MS.gene067812:CDS |
| ACCAGAGTTCTTCTTGCAGT+GGG | 0.504536 | 7.1:+19428339 | MS.gene067812:CDS |
| CCCCACTGCAAGAAGAACTC+TGG | 0.514893 | 7.1:-19428340 | None:intergenic |
| TCAGCAGAGGACACCGGTAA+AGG | 0.516208 | 7.1:+19429190 | MS.gene067812:CDS |
| GGAAGCGTTTGAGATGTGTA+AGG | 0.516835 | 7.1:+19428368 | MS.gene067812:CDS |
| GGAGAAGAAAAGTAACAAGA+AGG | 0.520874 | 7.1:+19429563 | MS.gene067812:CDS |
| GAGAGAGTAATGTAAAGCTT+AGG | 0.521687 | 7.1:-19429256 | None:intergenic |
| ATTGAAGGCTATGGGGAGTG+TGG | 0.522393 | 7.1:+19429700 | MS.gene067812:CDS |
| GGCACTTGCGATGTTATCAA+TGG | 0.530662 | 7.1:+19429211 | MS.gene067812:CDS |
| TAACAGAAAATCGGCATCAC+CGG | 0.532579 | 7.1:+19429135 | MS.gene067812:CDS |
| ATATCAGTCAACCATGCTCC+AGG | 0.532665 | 7.1:-19429516 | None:intergenic |
| AAAATCGGCATCACCGGAGA+AGG | 0.542456 | 7.1:+19429141 | MS.gene067812:CDS |
| TTGGTATGCAGGAATTCCGA+TGG | 0.546689 | 7.1:+19429085 | MS.gene067812:intron |
| TAGTATCGATCTTCCTTCTC+CGG | 0.549815 | 7.1:-19429154 | None:intergenic |
| ACTATTCTACGACCGGCGGC+CGG | 0.561495 | 7.1:+19429109 | MS.gene067812:CDS |
| AACCAGAGTTCTTCTTGCAG+TGG | 0.563420 | 7.1:+19428338 | MS.gene067812:CDS |
| CGATGGAACTATTCTACGAC+CGG | 0.568292 | 7.1:+19429102 | MS.gene067812:CDS |
| AGTTGGTAAGTCCTGGAGCA+TGG | 0.569217 | 7.1:+19429505 | MS.gene067812:intron |
| TTTCTGTTATCTCCGGCCGC+CGG | 0.574206 | 7.1:-19429121 | None:intergenic |
| GTGTAAGGGTGAAAGATCCT+CGG | 0.610227 | 7.1:+19428383 | MS.gene067812:CDS |
| AAGAAAGCTTAATTCTGGAG+TGG | 0.623077 | 7.1:+19428438 | MS.gene067812:CDS |
| CGGTCGTAGAATAGTTCCAT+CGG | 0.626224 | 7.1:-19429101 | None:intergenic |
| TAGAAATGGAGACAGAAGAG+AGG | 0.628747 | 7.1:+19428290 | None:intergenic |
| AGATCGATACTACACGACGA+GGG | 0.631631 | 7.1:+19429165 | MS.gene067812:CDS |
| GATCGATACTACACGACGAG+GGG | 0.647579 | 7.1:+19429166 | MS.gene067812:CDS |
| GAAGCGTTTGAGATGTGTAA+GGG | 0.650307 | 7.1:+19428369 | MS.gene067812:CDS |
| CAAGAGGATTGAAGGCTATG+GGG | 0.656812 | 7.1:+19429693 | MS.gene067812:CDS |
| ATCGATACTACACGACGAGG+GGG | 0.671513 | 7.1:+19429167 | MS.gene067812:CDS |
| CCAGAGTTCTTCTTGCAGTG+GGG | 0.679245 | 7.1:+19428340 | MS.gene067812:CDS |
| AACAACCTAATCGTCTCACA+AGG | 0.681018 | 7.1:+19428518 | MS.gene067812:CDS |
| TGGAACTATTCTACGACCGG+CGG | 0.694045 | 7.1:+19429105 | MS.gene067812:CDS |
| AAGATCGATACTACACGACG+AGG | 0.699452 | 7.1:+19429164 | MS.gene067812:CDS |
| TTAAGCCTAGTTGAAATCCG+AGG | 0.705168 | 7.1:-19428400 | None:intergenic |
| ATTTCAACTAGGCTTAACGG+TGG | 0.734742 | 7.1:+19428406 | MS.gene067812:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAGAGATAAAATAAAAA+AGG | - | chr7.1:19429628-19429647 | None:intergenic | 10.0% |
| !!! | TTTTTATGTTGTTTTTATTA+TGG | + | chr7.1:19429404-19429423 | MS.gene067812:intron | 10.0% |
| !!! | AAAGAAAAAATGGTTTTTTT+TGG | + | chr7.1:19428727-19428746 | MS.gene067812:intron | 15.0% |
| !!! | ATTTTGAGTAAAAGAAAAAA+TGG | + | chr7.1:19428717-19428736 | MS.gene067812:intron | 15.0% |
| !!! | ATTTTTTATGTGATTTTGAT+TGG | + | chr7.1:19429057-19429076 | MS.gene067812:intron | 15.0% |
| !!! | TGTTTTTATTATGGTTAATT+GGG | + | chr7.1:19429413-19429432 | MS.gene067812:intron | 15.0% |
| !!! | TTGTTTTTATTATGGTTAAT+TGG | + | chr7.1:19429412-19429431 | MS.gene067812:intron | 15.0% |
| !! | AATACAAGTTTATATCATCT+GGG | - | chr7.1:19428950-19428969 | None:intergenic | 20.0% |
| ! | GAATACAAACACTGAAAAAA+TGG | - | chr7.1:19428855-19428874 | None:intergenic | 25.0% |
| ! | GAATACAAGTTTATATCATC+TGG | - | chr7.1:19428951-19428970 | None:intergenic | 25.0% |
| ! | TTATTATGGTTAATTGGGTT+TGG | + | chr7.1:19429418-19429437 | MS.gene067812:intron | 25.0% |
| ! | TTGAAAACTACCATAACAAA+TGG | + | chr7.1:19428544-19428563 | MS.gene067812:intron | 25.0% |
| !! | CTGAAAAAAAAACTGGATTT+TGG | + | chr7.1:19428619-19428638 | MS.gene067812:intron | 25.0% |
| !! | CTTTTACTCAAAATCAAACA+AGG | - | chr7.1:19428711-19428730 | None:intergenic | 25.0% |
| !!! | AAATCCAGTTTTTTTTTCAG+AGG | - | chr7.1:19428619-19428638 | None:intergenic | 25.0% |
| !!! | GATGGATTTTTTTTTCAGAA+GGG | + | chr7.1:19428979-19428998 | MS.gene067812:intron | 25.0% |
| !!! | GTAATGAAGTTGTTTTCATT+TGG | + | chr7.1:19428773-19428792 | MS.gene067812:intron | 25.0% |
| !!! | TGATGGATTTTTTTTTCAGA+AGG | + | chr7.1:19428978-19428997 | MS.gene067812:intron | 25.0% |
| !!! | TTTTCATTTGGTTGGTTAAT+GGG | + | chr7.1:19428785-19428804 | MS.gene067812:intron | 25.0% |
| !!! | TTTTGGTTTGTGAAAAATGA+TGG | + | chr7.1:19428636-19428655 | MS.gene067812:intron | 25.0% |
| !!! | TTTTTTTTTCAGAAGGGTAT+TGG | + | chr7.1:19428985-19429004 | MS.gene067812:intron | 25.0% |
| AAAAGTAACAAGAAGGTTAG+TGG | + | chr7.1:19429570-19429589 | MS.gene067812:intron | 30.0% | |
| AACTTACCAATAAGCTTCTT+TGG | - | chr7.1:19429363-19429382 | None:intergenic | 30.0% | |
| ACTTGTATTCTGTTCTTTGA+TGG | + | chr7.1:19428961-19428980 | MS.gene067812:intron | 30.0% | |
| AGATGAAGATGAAGATAAAG+AGG | - | chr7.1:19428583-19428602 | None:intergenic | 30.0% | |
| ATCAGAAGAAAGCTTAATTC+TGG | + | chr7.1:19428433-19428452 | MS.gene067812:CDS | 30.0% | |
| GAAGATAAGCATAAAAGAGA+GGG | + | chr7.1:19428821-19428840 | MS.gene067812:intron | 30.0% | |
| TCAAGAGAGATATGAAGTTA+GGG | + | chr7.1:19429542-19429561 | MS.gene067812:CDS | 30.0% | |
| TGAAGATAAGCATAAAAGAG+AGG | + | chr7.1:19428820-19428839 | MS.gene067812:intron | 30.0% | |
| ! | TTTCATTTGGTTGGTTAATG+GGG | + | chr7.1:19428786-19428805 | MS.gene067812:intron | 30.0% |
| !! | GAAGATTTTCTTGCTATGAA+AGG | + | chr7.1:19429295-19429314 | MS.gene067812:CDS | 30.0% |
| !! | GTTTTCATTTGGTTGGTTAA+TGG | + | chr7.1:19428784-19428803 | MS.gene067812:intron | 30.0% |
| !! | TGAAGTTGTTTTCATTTGGT+TGG | + | chr7.1:19428777-19428796 | MS.gene067812:intron | 30.0% |
| !!! | GTGATTTTGATTGGAAGTTT+TGG | + | chr7.1:19429066-19429085 | MS.gene067812:intron | 30.0% |
| ACAAACACCAAACAAACATG+TGG | - | chr7.1:19429481-19429500 | None:intergenic | 35.0% | |
| ATGTTGTCCACATGTTTGTT+TGG | + | chr7.1:19429471-19429490 | MS.gene067812:intron | 35.0% | |
| GAGAAGAAAAAGCTCTTGTT+TGG | + | chr7.1:19429233-19429252 | MS.gene067812:CDS | 35.0% | |
| GAGAGAGTAATGTAAAGCTT+AGG | - | chr7.1:19429259-19429278 | None:intergenic | 35.0% | |
| GATCATCCAAAGAAGCTTAT+TGG | + | chr7.1:19429354-19429373 | MS.gene067812:CDS | 35.0% | |
| GGAGAAGAAAAGTAACAAGA+AGG | + | chr7.1:19429563-19429582 | MS.gene067812:CDS | 35.0% | |
| GTCAAGAGAGATATGAAGTT+AGG | + | chr7.1:19429541-19429560 | MS.gene067812:CDS | 35.0% | |
| TAAGCTTCTTTGGATGATCT+TGG | - | chr7.1:19429353-19429372 | None:intergenic | 35.0% | |
| TCATCTTCATCTTCCTTGTT+TGG | + | chr7.1:19428591-19428610 | MS.gene067812:intron | 35.0% | |
| ! | AAGAAAGCTTAATTCTGGAG+TGG | + | chr7.1:19428438-19428457 | MS.gene067812:CDS | 35.0% |
| ! | CTGAGAAGATCCATTTGTTA+TGG | - | chr7.1:19428557-19428576 | None:intergenic | 35.0% |
| ! | GGTTCCTCTGAAAAAAAAAC+TGG | + | chr7.1:19428612-19428631 | MS.gene067812:intron | 35.0% |
| !! | GTTTGGTGTTTGTTTACAGT+TGG | + | chr7.1:19429488-19429507 | MS.gene067812:intron | 35.0% |
| !! | TTTTTCAGAGGAACCAAACA+AGG | - | chr7.1:19428607-19428626 | None:intergenic | 35.0% |
| !!! | TTTTTGGGTTTTTGATGCAG+AGG | + | chr7.1:19429669-19429688 | MS.gene067812:intron | 35.0% |
| AACAACCTAATCGTCTCACA+AGG | + | chr7.1:19428518-19428537 | MS.gene067812:CDS | 40.0% | |
| AACAACCTTGTGAGACGATT+AGG | - | chr7.1:19428526-19428545 | None:intergenic | 40.0% | |
| AAGATCCTCGGATTTCAACT+AGG | + | chr7.1:19428395-19428414 | MS.gene067812:CDS | 40.0% | |
| ACAAGAAGGTTAGTGGTTGT+TGG | + | chr7.1:19429577-19429596 | MS.gene067812:intron | 40.0% | |
| ATTTCAACTAGGCTTAACGG+TGG | + | chr7.1:19428406-19428425 | MS.gene067812:CDS | 40.0% | |
| CGGATTTCAACTAGGCTTAA+CGG | + | chr7.1:19428403-19428422 | MS.gene067812:CDS | 40.0% | |
| TAACAGAAAATCGGCATCAC+CGG | + | chr7.1:19429135-19429154 | MS.gene067812:CDS | 40.0% | |
| TCCTCAAAGACCCAAAAAGA+GGG | + | chr7.1:19429327-19429346 | MS.gene067812:CDS | 40.0% | |
| TTAAGCCTAGTTGAAATCCG+AGG | - | chr7.1:19428403-19428422 | None:intergenic | 40.0% | |
| TTCCTCAAAGACCCAAAAAG+AGG | + | chr7.1:19429326-19429345 | MS.gene067812:CDS | 40.0% | |
| ! | ATGATCTTGGCCCTCTTTTT+GGG | - | chr7.1:19429340-19429359 | None:intergenic | 40.0% |
| ! | GAAGCGTTTGAGATGTGTAA+GGG | + | chr7.1:19428369-19428388 | MS.gene067812:CDS | 40.0% |
| !! | GATTGGAAGTTTTGGTATGC+AGG | + | chr7.1:19429074-19429093 | MS.gene067812:intron | 40.0% |
| !! | TAGTATCGATCTTCCTTCTC+CGG | - | chr7.1:19429157-19429176 | None:intergenic | 40.0% |
| !! | TGTTTACAGTTGGTAAGTCC+TGG | + | chr7.1:19429498-19429517 | MS.gene067812:intron | 40.0% |
| !!! | TGCCGATTTTCTGTTATCTC+CGG | - | chr7.1:19429131-19429150 | None:intergenic | 40.0% |
| AACATCGCAAGTGCCTTTAC+CGG | - | chr7.1:19429206-19429225 | None:intergenic | 45.0% | |
| AACCAGAGTTCTTCTTGCAG+TGG | + | chr7.1:19428338-19428357 | MS.gene067812:CDS | 45.0% | |
| AAGATCGATACTACACGACG+AGG | + | chr7.1:19429164-19429183 | MS.gene067812:CDS | 45.0% | |
| ACCAGAGTTCTTCTTGCAGT+GGG | + | chr7.1:19428339-19428358 | MS.gene067812:CDS | 45.0% | |
| AGATCGATACTACACGACGA+GGG | + | chr7.1:19429165-19429184 | MS.gene067812:CDS | 45.0% | |
| ATATCAGTCAACCATGCTCC+AGG | - | chr7.1:19429519-19429538 | None:intergenic | 45.0% | |
| CAAGAGGATTGAAGGCTATG+GGG | + | chr7.1:19429693-19429712 | MS.gene067812:CDS | 45.0% | |
| CCAAGAGGATTGAAGGCTAT+GGG | + | chr7.1:19429692-19429711 | MS.gene067812:CDS | 45.0% | |
| CGATGGAACTATTCTACGAC+CGG | + | chr7.1:19429102-19429121 | MS.gene067812:CDS | 45.0% | |
| CGGTCGTAGAATAGTTCCAT+CGG | - | chr7.1:19429104-19429123 | None:intergenic | 45.0% | |
| CTGTTGCCTTACATGCTCTT+TGG | - | chr7.1:19428318-19428337 | None:intergenic | 45.0% | |
| GGCACTTGCGATGTTATCAA+TGG | + | chr7.1:19429211-19429230 | MS.gene067812:CDS | 45.0% | |
| GGCCGGAGATAACAGAAAAT+CGG | + | chr7.1:19429126-19429145 | MS.gene067812:CDS | 45.0% | |
| GTGTAAGGGTGAAAGATCCT+CGG | + | chr7.1:19428383-19428402 | MS.gene067812:CDS | 45.0% | |
| TTGGTATGCAGGAATTCCGA+TGG | + | chr7.1:19429085-19429104 | MS.gene067812:intron | 45.0% | |
| ! | GAGGAACCAAAGAGCATGTA+AGG | + | chr7.1:19428309-19428328 | MS.gene067812:CDS | 45.0% |
| ! | GATGATCTTGGCCCTCTTTT+TGG | - | chr7.1:19429341-19429360 | None:intergenic | 45.0% |
| ! | TTTTTGATGCAGAGGCCAAG+AGG | + | chr7.1:19429677-19429696 | MS.gene067812:intron | 45.0% |
| !! | GGAAGCGTTTGAGATGTGTA+AGG | + | chr7.1:19428368-19428387 | MS.gene067812:CDS | 45.0% |
| !!! | ATTTTTCTAAATATAATTTT+TGG | + | chr7.1:19429653-19429672 | MS.gene067812:intron | 5.0% |
| !!! | TTTTTCTAAATATAATTTTT+GGG | + | chr7.1:19429654-19429673 | MS.gene067812:intron | 5.0% |
| AAAATCGGCATCACCGGAGA+AGG | + | chr7.1:19429141-19429160 | MS.gene067812:CDS | 50.0% | |
| ATCGATACTACACGACGAGG+GGG | + | chr7.1:19429167-19429186 | MS.gene067812:CDS | 50.0% | |
| ATTGAAGGCTATGGGGAGTG+TGG | + | chr7.1:19429700-19429719 | MS.gene067812:CDS | 50.0% | |
| CCAGAGTTCTTCTTGCAGTG+GGG | + | chr7.1:19428340-19428359 | MS.gene067812:CDS | 50.0% | |
| CCCATAGCCTTCAATCCTCT+TGG | - | chr7.1:19429695-19429714 | None:intergenic | 50.0% | |
| GATCGATACTACACGACGAG+GGG | + | chr7.1:19429166-19429185 | MS.gene067812:CDS | 50.0% | |
| GCCAAGAGGATTGAAGGCTA+TGG | + | chr7.1:19429691-19429710 | MS.gene067812:CDS | 50.0% | |
| GGAGTGGAGAATCATCGTTC+TGG | + | chr7.1:19428454-19428473 | MS.gene067812:CDS | 50.0% | |
| TCTTCTTGCAGTGGGGAAAC+AGG | + | chr7.1:19428347-19428366 | MS.gene067812:CDS | 50.0% | |
| TGGAACTATTCTACGACCGG+CGG | + | chr7.1:19429105-19429124 | MS.gene067812:CDS | 50.0% | |
| !! | AGTTGGTAAGTCCTGGAGCA+TGG | + | chr7.1:19429505-19429524 | MS.gene067812:intron | 50.0% |
| !!! | GCCCTCTTTTTGGGTCTTTG+AGG | - | chr7.1:19429331-19429350 | None:intergenic | 50.0% |
| CCCCACTGCAAGAAGAACTC+TGG | - | chr7.1:19428343-19428362 | None:intergenic | 55.0% | |
| GCAGAGGCCAAGAGGATTGA+AGG | + | chr7.1:19429685-19429704 | MS.gene067812:intron | 55.0% | |
| TCAGCAGAGGACACCGGTAA+AGG | + | chr7.1:19429190-19429209 | MS.gene067812:CDS | 55.0% | |
| TTTCTGTTATCTCCGGCCGC+CGG | - | chr7.1:19429124-19429143 | None:intergenic | 55.0% | |
| ACTATTCTACGACCGGCGGC+CGG | + | chr7.1:19429109-19429128 | MS.gene067812:CDS | 60.0% | |
| AGGGGGTCAGCAGAGGACAC+CGG | + | chr7.1:19429184-19429203 | MS.gene067812:CDS | 65.0% | |
| CACGACGAGGGGGTCAGCAG+AGG | + | chr7.1:19429177-19429196 | MS.gene067812:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 19428295 | 19429739 | 19428295 | ID=MS.gene067812 |
| chr7.1 | mRNA | 19428295 | 19429739 | 19428295 | ID=MS.gene067812.t1;Parent=MS.gene067812 |
| chr7.1 | exon | 19428295 | 19428539 | 19428295 | ID=MS.gene067812.t1.exon1;Parent=MS.gene067812.t1 |
| chr7.1 | CDS | 19428295 | 19428539 | 19428295 | ID=cds.MS.gene067812.t1;Parent=MS.gene067812.t1 |
| chr7.1 | exon | 19429096 | 19429375 | 19429096 | ID=MS.gene067812.t1.exon2;Parent=MS.gene067812.t1 |
| chr7.1 | CDS | 19429096 | 19429375 | 19429096 | ID=cds.MS.gene067812.t1;Parent=MS.gene067812.t1 |
| chr7.1 | exon | 19429507 | 19429584 | 19429507 | ID=MS.gene067812.t1.exon3;Parent=MS.gene067812.t1 |
| chr7.1 | CDS | 19429507 | 19429584 | 19429507 | ID=cds.MS.gene067812.t1;Parent=MS.gene067812.t1 |
| chr7.1 | exon | 19429689 | 19429739 | 19429689 | ID=MS.gene067812.t1.exon4;Parent=MS.gene067812.t1 |
| chr7.1 | CDS | 19429689 | 19429739 | 19429689 | ID=cds.MS.gene067812.t1;Parent=MS.gene067812.t1 |
| Gene Sequence |
| Protein sequence |
