Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068388.t1 | KEH31818.1 | 82.6 | 207 | 12 | 3 | 1 | 207 | 1 | 183 | 7.10E-82 | 313.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068388.t1 | Q9ZRD6 | 74.9 | 207 | 28 | 3 | 1 | 207 | 1 | 183 | 3.3e-75 | 282.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068388.t1 | A0A072URY4 | 82.6 | 207 | 12 | 3 | 1 | 207 | 1 | 183 | 5.2e-82 | 313.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene068388 | 0.830225 | 3.31E-55 | -1.69E-46 |
| MS.gene049159 | MS.gene068388 | 0.84561 | 3.65E-59 | -1.69E-46 |
| MS.gene049254 | MS.gene068388 | 0.827406 | 1.59E-54 | -1.69E-46 |
| MS.gene049404 | MS.gene068388 | 0.802157 | 6.41E-49 | -1.69E-46 |
| MS.gene049435 | MS.gene068388 | 0.815984 | 6.99E-52 | -1.69E-46 |
| MS.gene049585 | MS.gene068388 | 0.833043 | 6.69E-56 | -1.69E-46 |
| MS.gene049711 | MS.gene068388 | 0.81055 | 1.09E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene068388 | 0.819223 | 1.30E-52 | -1.69E-46 |
| MS.gene049983 | MS.gene068388 | 0.806535 | 7.85E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene068388 | 0.832698 | 8.15E-56 | -1.69E-46 |
| MS.gene050559 | MS.gene068388 | 0.80451 | 2.09E-49 | -1.69E-46 |
| MS.gene050561 | MS.gene068388 | 0.813049 | 3.12E-51 | -1.69E-46 |
| MS.gene050562 | MS.gene068388 | 0.806918 | 6.51E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene068388 | 0.805362 | 1.39E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene068388 | 0.804064 | 2.58E-49 | -1.69E-46 |
| MS.gene050724 | MS.gene068388 | 0.801713 | 7.91E-49 | -1.69E-46 |
| MS.gene050780 | MS.gene068388 | 0.817381 | 3.40E-52 | -1.69E-46 |
| MS.gene050826 | MS.gene068388 | 0.827965 | 1.17E-54 | -1.69E-46 |
| MS.gene050844 | MS.gene068388 | 0.801535 | 8.60E-49 | -1.69E-46 |
| MS.gene051102 | MS.gene068388 | 0.802933 | 4.43E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene068388 | 0.865639 | 5.10E-65 | -1.69E-46 |
| MS.gene051210 | MS.gene068388 | 0.811874 | 5.63E-51 | -1.69E-46 |
| MS.gene051247 | MS.gene068388 | 0.800765 | 1.24E-48 | -1.69E-46 |
| MS.gene051279 | MS.gene068388 | 0.820027 | 8.52E-53 | -1.69E-46 |
| MS.gene051490 | MS.gene068388 | 0.812287 | 4.57E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene068388 | 0.83768 | 4.51E-57 | -1.69E-46 |
| MS.gene051800 | MS.gene068388 | 0.852012 | 6.10E-61 | -1.69E-46 |
| MS.gene052037 | MS.gene068388 | 0.815835 | 7.54E-52 | -1.69E-46 |
| MS.gene052323 | MS.gene068388 | 0.80534 | 1.40E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene068388 | 0.838261 | 3.19E-57 | -1.69E-46 |
| MS.gene052582 | MS.gene068388 | 0.807379 | 5.20E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene068388 | 0.808214 | 3.46E-50 | -1.69E-46 |
| MS.gene052611 | MS.gene068388 | 0.802199 | 6.28E-49 | -1.69E-46 |
| MS.gene052677 | MS.gene068388 | 0.800735 | 1.25E-48 | -1.69E-46 |
| MS.gene052773 | MS.gene068388 | 0.801286 | 9.67E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene068388 | 0.810775 | 9.74E-51 | -1.69E-46 |
| MS.gene052896 | MS.gene068388 | 0.817026 | 4.08E-52 | -1.69E-46 |
| MS.gene053079 | MS.gene068388 | 0.819735 | 9.93E-53 | -1.69E-46 |
| MS.gene053164 | MS.gene068388 | 0.804515 | 2.08E-49 | -1.69E-46 |
| MS.gene05350 | MS.gene068388 | 0.806853 | 6.72E-50 | -1.69E-46 |
| MS.gene053565 | MS.gene068388 | 0.822722 | 2.03E-53 | -1.69E-46 |
| MS.gene053621 | MS.gene068388 | 0.813587 | 2.37E-51 | -1.69E-46 |
| MS.gene053998 | MS.gene068388 | 0.822279 | 2.58E-53 | -1.69E-46 |
| MS.gene05414 | MS.gene068388 | 0.806134 | 9.53E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene068388 | 0.822791 | 1.96E-53 | -1.69E-46 |
| MS.gene05417 | MS.gene068388 | 0.811221 | 7.80E-51 | -1.69E-46 |
| MS.gene054236 | MS.gene068388 | 0.83392 | 4.04E-56 | -1.69E-46 |
| MS.gene054467 | MS.gene068388 | 0.811132 | 8.16E-51 | -1.69E-46 |
| MS.gene054468 | MS.gene068388 | 0.806945 | 6.43E-50 | -1.69E-46 |
| MS.gene054472 | MS.gene068388 | 0.813815 | 2.11E-51 | -1.69E-46 |
| MS.gene054576 | MS.gene068388 | 0.8196 | 1.07E-52 | -1.69E-46 |
| MS.gene054584 | MS.gene068388 | 0.801996 | 6.92E-49 | -1.69E-46 |
| MS.gene05462 | MS.gene068388 | 0.816047 | 6.76E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene068388 | 0.821976 | 3.03E-53 | -1.69E-46 |
| MS.gene05468 | MS.gene068388 | 0.804797 | 1.82E-49 | -1.69E-46 |
| MS.gene054775 | MS.gene068388 | 0.80864 | 2.80E-50 | -1.69E-46 |
| MS.gene055227 | MS.gene068388 | 0.812475 | 4.16E-51 | -1.69E-46 |
| MS.gene055228 | MS.gene068388 | 0.829937 | 3.89E-55 | -1.69E-46 |
| MS.gene055310 | MS.gene068388 | 0.800968 | 1.12E-48 | -1.69E-46 |
| MS.gene055465 | MS.gene068388 | 0.812268 | 4.62E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene068388 | 0.815259 | 1.01E-51 | -1.69E-46 |
| MS.gene055468 | MS.gene068388 | 0.800912 | 1.15E-48 | -1.69E-46 |
| MS.gene055469 | MS.gene068388 | 0.804602 | 2.00E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene068388 | 0.813496 | 2.49E-51 | -1.69E-46 |
| MS.gene055864 | MS.gene068388 | 0.814589 | 1.43E-51 | -1.69E-46 |
| MS.gene055926 | MS.gene068388 | 0.852624 | 4.09E-61 | -1.69E-46 |
| MS.gene056050 | MS.gene068388 | 0.805627 | 1.22E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene068388 | 0.841703 | 4.04E-58 | -1.69E-46 |
| MS.gene056308 | MS.gene068388 | 0.804212 | 2.41E-49 | -1.69E-46 |
| MS.gene056480 | MS.gene068388 | 0.802404 | 5.70E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene068388 | 0.801647 | 8.16E-49 | -1.69E-46 |
| MS.gene056507 | MS.gene068388 | 0.844915 | 5.62E-59 | -1.69E-46 |
| MS.gene056873 | MS.gene068388 | 0.809726 | 1.64E-50 | -1.69E-46 |
| MS.gene057194 | MS.gene068388 | 0.812464 | 4.18E-51 | -1.69E-46 |
| MS.gene057314 | MS.gene068388 | 0.804201 | 2.42E-49 | -1.69E-46 |
| MS.gene057360 | MS.gene068388 | 0.813663 | 2.28E-51 | -1.69E-46 |
| MS.gene057444 | MS.gene068388 | 0.800501 | 1.40E-48 | -1.69E-46 |
| MS.gene057598 | MS.gene068388 | 0.80358 | 3.26E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene068388 | 0.847434 | 1.16E-59 | -1.69E-46 |
| MS.gene057915 | MS.gene068388 | 0.827776 | 1.30E-54 | -1.69E-46 |
| MS.gene058010 | MS.gene068388 | 0.852622 | 4.09E-61 | -1.69E-46 |
| MS.gene058081 | MS.gene068388 | 0.802895 | 4.51E-49 | -1.69E-46 |
| MS.gene058289 | MS.gene068388 | 0.804145 | 2.49E-49 | -1.69E-46 |
| MS.gene058294 | MS.gene068388 | 0.804733 | 1.87E-49 | -1.69E-46 |
| MS.gene058330 | MS.gene068388 | 0.800842 | 1.19E-48 | -1.69E-46 |
| MS.gene058647 | MS.gene068388 | 0.807087 | 6.00E-50 | -1.69E-46 |
| MS.gene058919 | MS.gene068388 | 0.811109 | 8.25E-51 | -1.69E-46 |
| MS.gene058979 | MS.gene068388 | 0.811296 | 7.52E-51 | -1.69E-46 |
| MS.gene05897 | MS.gene068388 | 0.805145 | 1.54E-49 | -1.69E-46 |
| MS.gene059170 | MS.gene068388 | 0.810886 | 9.22E-51 | -1.69E-46 |
| MS.gene059272 | MS.gene068388 | 0.802535 | 5.36E-49 | -1.69E-46 |
| MS.gene059283 | MS.gene068388 | 0.818393 | 2.01E-52 | -1.69E-46 |
| MS.gene059439 | MS.gene068388 | 0.812919 | 3.33E-51 | -1.69E-46 |
| MS.gene059570 | MS.gene068388 | 0.809796 | 1.58E-50 | -1.69E-46 |
| MS.gene059584 | MS.gene068388 | 0.806598 | 7.61E-50 | -1.69E-46 |
| MS.gene059713 | MS.gene068388 | 0.814659 | 1.38E-51 | -1.69E-46 |
| MS.gene059725 | MS.gene068388 | 0.822622 | 2.15E-53 | -1.69E-46 |
| MS.gene059842 | MS.gene068388 | 0.811115 | 8.23E-51 | -1.69E-46 |
| MS.gene060011 | MS.gene068388 | 0.835324 | 1.79E-56 | -1.69E-46 |
| MS.gene060167 | MS.gene068388 | 0.81239 | 4.34E-51 | -1.69E-46 |
| MS.gene060310 | MS.gene068388 | 0.824809 | 6.60E-54 | -1.69E-46 |
| MS.gene060312 | MS.gene068388 | 0.807661 | 4.53E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene068388 | 0.83508 | 2.07E-56 | -1.69E-46 |
| MS.gene060373 | MS.gene068388 | 0.818644 | 1.76E-52 | -1.69E-46 |
| MS.gene06052 | MS.gene068388 | 0.851002 | 1.18E-60 | -1.69E-46 |
| MS.gene060918 | MS.gene068388 | 0.812842 | 3.46E-51 | -1.69E-46 |
| MS.gene060932 | MS.gene068388 | 0.813101 | 3.03E-51 | -1.69E-46 |
| MS.gene060998 | MS.gene068388 | 0.829988 | 3.78E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068388.t1 | MTR_4g105490 | 82.609 | 207 | 12 | 3 | 1 | 207 | 1 | 183 | 4.63e-118 | 333 |
| MS.gene068388.t1 | MTR_4g105490 | 82.609 | 207 | 12 | 3 | 1 | 207 | 1 | 183 | 7.54e-118 | 333 |
| MS.gene068388.t1 | MTR_4g105490 | 79.227 | 207 | 10 | 4 | 1 | 207 | 1 | 174 | 7.62e-110 | 312 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068388.t1 | AT5G58060 | 74.879 | 207 | 28 | 3 | 1 | 207 | 1 | 183 | 2.88e-105 | 301 |
| MS.gene068388.t1 | AT5G58060 | 68.122 | 229 | 27 | 5 | 1 | 207 | 1 | 205 | 7.56e-98 | 283 |
| MS.gene068388.t1 | AT5G58180 | 64.115 | 209 | 47 | 5 | 1 | 207 | 1 | 183 | 1.08e-82 | 244 |
| MS.gene068388.t1 | AT5G58180 | 64.115 | 209 | 47 | 5 | 1 | 207 | 1 | 183 | 1.08e-82 | 244 |
Find 40 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTGTGCAGTGGGATTTA+TGG | 0.204222 | 2.3:-982600 | MS.gene068388:CDS |
| TGTGAGAGCTTCATTCAAAT+AGG | 0.291898 | 2.3:+981267 | None:intergenic |
| GATGAGTATATTAAAAGTTT+TGG | 0.329342 | 2.3:-981334 | MS.gene068388:CDS |
| GTGAGAGCTTCATTCAAATA+GGG | 0.377006 | 2.3:+981268 | None:intergenic |
| AACAACTTATCAGCCTCTGC+AGG | 0.421700 | 2.3:+981061 | None:intergenic |
| TGAAGCTCTCACAAAATTCC+AGG | 0.436095 | 2.3:-981257 | MS.gene068388:intron |
| AACGATGAACTCTTTGACGC+TGG | 0.443526 | 2.3:+982952 | None:intergenic |
| TTGTTTCGTCCAACTCCCTC+TGG | 0.449194 | 2.3:+981032 | None:intergenic |
| GAGAAAACCGCACTACGAAC+TGG | 0.450212 | 2.3:+982566 | None:intergenic |
| GTGCATGCGTACAACAGAAA+TGG | 0.456788 | 2.3:-982623 | MS.gene068388:CDS |
| TGTAGCTAATCGTACTCCTC+AGG | 0.467563 | 2.3:-982915 | MS.gene068388:CDS |
| CACCGGCGACGGTTCAGAAT+CGG | 0.497370 | 2.3:-983026 | MS.gene068388:CDS |
| TGATCTGAGTGCAGCATCGC+AGG | 0.501044 | 2.3:-980326 | None:intergenic |
| TCTTGCACGAGGGGAGAAGC+TGG | 0.513834 | 2.3:-980371 | MS.gene068388:CDS |
| AATGAAGATCACGGCTCTGT+TGG | 0.533873 | 2.3:-983059 | MS.gene068388:CDS |
| GTTGAAAATCCAGAGGGAGT+TGG | 0.542352 | 2.3:-981041 | MS.gene068388:CDS |
| TCGTGCAAGAACACTATCAA+TGG | 0.542955 | 2.3:+980384 | None:intergenic |
| AGAAATGGACTTTGTGCAGT+GGG | 0.544952 | 2.3:-982608 | MS.gene068388:CDS |
| TTGATAGTGTTCTTGCACGA+GGG | 0.548647 | 2.3:-980381 | MS.gene068388:CDS |
| CAGAAATGGACTTTGTGCAG+TGG | 0.556323 | 2.3:-982609 | MS.gene068388:CDS |
| CACCGATTCTGAACCGTCGC+CGG | 0.567262 | 2.3:+983024 | None:intergenic |
| GCTTCCGATGTGAGTCACTT+CGG | 0.581854 | 2.3:-982989 | MS.gene068388:CDS |
| GCTTCATTCAAATAGGGCCA+TGG | 0.584327 | 2.3:+981274 | None:intergenic |
| TTCTGGTTGTAAACAGCACA+AGG | 0.585201 | 2.3:-980408 | MS.gene068388:CDS |
| CGATTCTGAACCGTCGCCGG+TGG | 0.585895 | 2.3:+983027 | None:intergenic |
| TGATAGTGTTCTTGCACGAG+GGG | 0.590135 | 2.3:-980380 | MS.gene068388:CDS |
| AAAGAAACTTCGTAGCTGAA+CGG | 0.590163 | 2.3:+982880 | None:intergenic |
| TGAATCGTGGAGAAGCACTC+AGG | 0.600979 | 2.3:-981311 | MS.gene068388:CDS |
| GTGCTAAAATCCACCGGCGA+CGG | 0.608951 | 2.3:-983037 | MS.gene068388:CDS |
| GTAGCTAATCGTACTCCTCA+GGG | 0.610974 | 2.3:-982914 | MS.gene068388:CDS |
| AAATCTCCAGGACCCTGCAG+AGG | 0.620458 | 2.3:-981074 | MS.gene068388:intron |
| CTGTTGGTGCTAAAATCCAC+CGG | 0.630376 | 2.3:-983043 | MS.gene068388:CDS |
| ACAACTTATCAGCCTCTGCA+GGG | 0.636695 | 2.3:+981062 | None:intergenic |
| ATTGATAGTGTTCTTGCACG+AGG | 0.647666 | 2.3:-980382 | MS.gene068388:CDS |
| TCACTATCCAGTTCGTAGTG+CGG | 0.651590 | 2.3:-982573 | MS.gene068388:CDS |
| ACGGATTGACGCTGACCCTG+AGG | 0.664459 | 2.3:+982899 | None:intergenic |
| ATAAGTTGTTGAAAATCCAG+AGG | 0.667842 | 2.3:-981048 | MS.gene068388:CDS |
| TAAGTTGTTGAAAATCCAGA+GGG | 0.670033 | 2.3:-981047 | MS.gene068388:CDS |
| AGGAAGACAATACTCAACCA+TGG | 0.696331 | 2.3:-981291 | MS.gene068388:CDS |
| GTAACCGAAGTGACTCACAT+CGG | 0.736012 | 2.3:+982985 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAGTATATTGAATTA+TGG | + | chr2.3:980730-980749 | None:intergenic | 10.0% |
| !!! | ATTTTCTCAAATTATATTAA+AGG | + | chr2.3:980706-980725 | None:intergenic | 10.0% |
| !!! | CTTATTAGTAATTTAATTTA+TGG | - | chr2.3:981468-981487 | MS.gene068388:intron | 10.0% |
| !! | AATGAAATTATTGAAACAAT+TGG | - | chr2.3:981719-981738 | MS.gene068388:intron | 15.0% |
| !! | AATTGTTTCAATAATTTCAT+TGG | + | chr2.3:981720-981739 | None:intergenic | 15.0% |
| !! | TTTATTAATGTACATATACT+TGG | - | chr2.3:982738-982757 | MS.gene068388:intron | 15.0% |
| !!! | TATTTAATTGATTTACTAGA+TGG | - | chr2.3:981998-982017 | MS.gene068388:intron | 15.0% |
| !! | AATTTACTGAAGTTAACAAT+TGG | - | chr2.3:982457-982476 | MS.gene068388:intron | 20.0% |
| !! | AGCAGTTAAAATCTAAAAAT+TGG | + | chr2.3:981622-981641 | None:intergenic | 20.0% |
| !! | CAAATAGATATATCTTTAGA+TGG | - | chr2.3:982529-982548 | MS.gene068388:CDS | 20.0% |
| !! | CAACTCATCATAATTAATTT+CGG | + | chr2.3:980652-980671 | None:intergenic | 20.0% |
| !! | CATCTAAAGATATATCTATT+TGG | + | chr2.3:982531-982550 | None:intergenic | 20.0% |
| !! | TGGTCATATTAAACTTAATT+TGG | - | chr2.3:982797-982816 | MS.gene068388:intron | 20.0% |
| !! | TTAATCCAACATATTCATAT+TGG | + | chr2.3:981689-981708 | None:intergenic | 20.0% |
| !!! | AATTTTGTTTGTTTGAGATT+CGG | - | chr2.3:982496-982515 | MS.gene068388:intron | 20.0% |
| !!! | GATGAGTATATTAAAAGTTT+TGG | - | chr2.3:982051-982070 | MS.gene068388:intron | 20.0% |
| !!! | TACTAATAAGACATTAGTTT+AGG | + | chr2.3:981458-981477 | None:intergenic | 20.0% |
| !!! | TACTTTTTTTGTAGAATACA+AGG | - | chr2.3:980740-980759 | MS.gene068388:intron | 20.0% |
| !!! | TGTTGAAATATTTTATGATG+TGG | + | chr2.3:981256-981275 | None:intergenic | 20.0% |
| !!! | TTCTTGATCTAGTATTTTTA+TGG | - | chr2.3:982822-982841 | MS.gene068388:intron | 20.0% |
| ! | CGAAATTAATTATGATGAGT+TGG | - | chr2.3:980650-980669 | MS.gene068388:intron | 25.0% |
| ! | CTAAAGTCAATATAATGAAG+AGG | + | chr2.3:982164-982183 | None:intergenic | 25.0% |
| ! | CTTATTAATGTACGTTTACT+TGG | - | chr2.3:982777-982796 | MS.gene068388:intron | 25.0% |
| ! | GATGAAGTTATCAAAATTGA+AGG | + | chr2.3:981865-981884 | None:intergenic | 25.0% |
| ! | GGATTTATATACCAAATACA+CGG | - | chr2.3:980671-980690 | MS.gene068388:intron | 25.0% |
| ! | TAGTACCAATATGAATATGT+TGG | - | chr2.3:981681-981700 | MS.gene068388:intron | 25.0% |
| !! | AAAAAGTGAAAAAGCATGTT+TGG | + | chr2.3:980545-980564 | None:intergenic | 25.0% |
| !! | ATCAACATATGATGATTTTC+TGG | - | chr2.3:982960-982979 | MS.gene068388:CDS | 25.0% |
| !! | ATTGAAACAATTGGTTAGTT+TGG | - | chr2.3:981728-981747 | MS.gene068388:intron | 25.0% |
| !! | TTTTATACAATTTATGCCTC+TGG | - | chr2.3:981317-981336 | MS.gene068388:CDS | 25.0% |
| !!! | ACTTTTTTCAAGTGAAACAT+GGG | + | chr2.3:981028-981047 | None:intergenic | 25.0% |
| !!! | CTAGTATTTTTATGGTGATT+GGG | - | chr2.3:982830-982849 | MS.gene068388:intron | 25.0% |
| !!! | TACTTTTTTCAAGTGAAACA+TGG | + | chr2.3:981029-981048 | None:intergenic | 25.0% |
| !!! | TCTAGTATTTTTATGGTGAT+TGG | - | chr2.3:982829-982848 | MS.gene068388:intron | 25.0% |
| !!! | TGATTATGTGTTTTTATGTC+TGG | - | chr2.3:980613-980632 | MS.gene068388:intron | 25.0% |
| !!! | TTTTTAGATTTTAACTGCTG+AGG | - | chr2.3:981623-981642 | MS.gene068388:intron | 25.0% |
| ATAAAAATATGATGTCCTGC+AGG | - | chr2.3:982023-982042 | MS.gene068388:intron | 30.0% | |
| ATAAGTTGTTGAAAATCCAG+AGG | - | chr2.3:982337-982356 | MS.gene068388:intron | 30.0% | |
| ATTTAGAAGACAAAAGATGC+AGG | + | chr2.3:982440-982459 | None:intergenic | 30.0% | |
| ATTTGACAGGAACATAGAAT+GGG | + | chr2.3:982295-982314 | None:intergenic | 30.0% | |
| CATTCAAGAGCCAAATATAA+CGG | - | chr2.3:982580-982599 | MS.gene068388:CDS | 30.0% | |
| CTTCGACATATAAAGACAAA+TGG | + | chr2.3:981912-981931 | None:intergenic | 30.0% | |
| GACAATAATCCATGACAAAA+TGG | + | chr2.3:981522-981541 | None:intergenic | 30.0% | |
| GCAAATCCAATCAAAATTGT+TGG | + | chr2.3:981156-981175 | None:intergenic | 30.0% | |
| GTCTGTATGTGATATATCAT+TGG | - | chr2.3:981823-981842 | MS.gene068388:intron | 30.0% | |
| GTGAAAAGTTATCATGTGAA+AGG | + | chr2.3:982265-982284 | None:intergenic | 30.0% | |
| TAAGTTGTTGAAAATCCAGA+GGG | - | chr2.3:982338-982357 | MS.gene068388:intron | 30.0% | |
| TCATTTCCTTCTCACTTTAT+TGG | - | chr2.3:982859-982878 | MS.gene068388:intron | 30.0% | |
| TGATATATCACATACAGACA+TGG | + | chr2.3:981822-981841 | None:intergenic | 30.0% | |
| TTCTTTCTATTATCTCAGTG+CGG | - | chr2.3:980979-980998 | MS.gene068388:intron | 30.0% | |
| TTGCAATAGTCCGTTATATT+TGG | + | chr2.3:982593-982612 | None:intergenic | 30.0% | |
| TTTAGAAGACAAAAGATGCA+GGG | + | chr2.3:982439-982458 | None:intergenic | 30.0% | |
| ! | AGTTTAGGATCTCAAATCTT+CGG | + | chr2.3:981443-981462 | None:intergenic | 30.0% |
| !! | CTTTGTCCAACAATTTTGAT+TGG | - | chr2.3:981147-981166 | MS.gene068388:intron | 30.0% |
| !! | TTAAAAGTTTTGGTGAATCG+TGG | - | chr2.3:982061-982080 | MS.gene068388:intron | 30.0% |
| !! | TTATTTTTCCGTTACTTAGC+CGG | - | chr2.3:981076-981095 | MS.gene068388:intron | 30.0% |
| !!! | ACAATTTTGATTGGATTTGC+CGG | - | chr2.3:981156-981175 | MS.gene068388:intron | 30.0% |
| !!! | CTTTGTTTTCCATTTTGTCA+TGG | - | chr2.3:981510-981529 | MS.gene068388:intron | 30.0% |
| !!! | TTTTAGGTGTTTGCTGTTTT+CGG | - | chr2.3:980936-980955 | MS.gene068388:intron | 30.0% |
| !!! | TTTTGATAATGTCTGTCAGT+TGG | - | chr2.3:982651-982670 | MS.gene068388:intron | 30.0% |
| AAAGAAACTTCGTAGCTGAA+CGG | + | chr2.3:980508-980527 | None:intergenic | 35.0% | |
| AAATACTGCGTAGAGAGATA+TGG | - | chr2.3:981275-981294 | MS.gene068388:CDS | 35.0% | |
| AAATCTACGACATCACATCA+CGG | + | chr2.3:982634-982653 | None:intergenic | 35.0% | |
| AATGGAGGAAAACAGATGTT+TGG | + | chr2.3:981894-981913 | None:intergenic | 35.0% | |
| ACGAGGAAGTTAGACAAAAT+TGG | + | chr2.3:981561-981580 | None:intergenic | 35.0% | |
| ATGCATGCTAAACACTTACA+AGG | + | chr2.3:982386-982405 | None:intergenic | 35.0% | |
| CCAAAACCAATAAAGTGAGA+AGG | + | chr2.3:982868-982887 | None:intergenic | 35.0% | |
| CGACATATAAAGACAAATGG+AGG | + | chr2.3:981909-981928 | None:intergenic | 35.0% | |
| CGAGGAAGTTAGACAAAATT+GGG | + | chr2.3:981560-981579 | None:intergenic | 35.0% | |
| CTAGATCTTTGTGTGTAATG+TGG | + | chr2.3:982935-982954 | None:intergenic | 35.0% | |
| GATTTGACAGGAACATAGAA+TGG | + | chr2.3:982296-982315 | None:intergenic | 35.0% | |
| GTGAGAGCTTCATTCAAATA+GGG | + | chr2.3:982120-982139 | None:intergenic | 35.0% | |
| TATATCACATACAGACATGG+TGG | + | chr2.3:981819-981838 | None:intergenic | 35.0% | |
| TCCAAAAATCATGTTGGACT+TGG | + | chr2.3:981418-981437 | None:intergenic | 35.0% | |
| TCGGTATCCAAAAATCATGT+TGG | + | chr2.3:981424-981443 | None:intergenic | 35.0% | |
| TGTGAGAGCTTCATTCAAAT+AGG | + | chr2.3:982121-982140 | None:intergenic | 35.0% | |
| TTGTTGGACAAAGCAAGTAA+TGG | + | chr2.3:981140-981159 | None:intergenic | 35.0% | |
| TTTGACAGGAACATAGAATG+GGG | + | chr2.3:982294-982313 | None:intergenic | 35.0% | |
| ! | AAAGAGTTCATCGTTTTCGT+AGG | - | chr2.3:980441-980460 | MS.gene068388:intron | 35.0% |
| ! | ACTGTGTATTGACACACTTT+AGG | - | chr2.3:981360-981379 | MS.gene068388:intron | 35.0% |
| ! | CTTTAAGTTCCCGTATGTTT+GGG | - | chr2.3:981947-981966 | MS.gene068388:intron | 35.0% |
| ! | TCCAAGTCCAACATGATTTT+TGG | - | chr2.3:981414-981433 | MS.gene068388:intron | 35.0% |
| ! | TGTATTGACACACTTTAGGT+CGG | - | chr2.3:981364-981383 | MS.gene068388:intron | 35.0% |
| !! | ATTGGTCATCGTTGATTTGA+CGG | + | chr2.3:981604-981623 | None:intergenic | 35.0% |
| !!! | ACTTTATTGGTTTTGGTGGT+TGG | - | chr2.3:982872-982891 | MS.gene068388:intron | 35.0% |
| !!! | CAATTTTGATTGGATTTGCC+GGG | - | chr2.3:981157-981176 | MS.gene068388:intron | 35.0% |
| !!! | CCTTCTCACTTTATTGGTTT+TGG | - | chr2.3:982865-982884 | MS.gene068388:intron | 35.0% |
| !!! | TCTCACTTTATTGGTTTTGG+TGG | - | chr2.3:982868-982887 | MS.gene068388:intron | 35.0% |
| !!! | TGATTTGACGGTTACTTTTG+CGG | + | chr2.3:981592-981611 | None:intergenic | 35.0% |
| ACAAAGTACACCATGGTGAT+TGG | + | chr2.3:981229-981248 | None:intergenic | 40.0% | |
| ACCTAAAAAAGCTTAGCACG+AGG | + | chr2.3:980924-980943 | None:intergenic | 40.0% | |
| ACTTTGTGCAGTGGGATTTA+TGG | - | chr2.3:980785-980804 | MS.gene068388:intron | 40.0% | |
| AGGAAGACAATACTCAACCA+TGG | - | chr2.3:982094-982113 | MS.gene068388:intron | 40.0% | |
| AGTTACCTTACCAATCACCA+TGG | - | chr2.3:981216-981235 | MS.gene068388:intron | 40.0% | |
| TATGTTCCTGTCAAATCTCC+AGG | - | chr2.3:982299-982318 | MS.gene068388:intron | 40.0% | |
| TCGTGCAAGAACACTATCAA+TGG | + | chr2.3:983004-983023 | None:intergenic | 40.0% | |
| TGAAGCTCTCACAAAATTCC+AGG | - | chr2.3:982128-982147 | MS.gene068388:intron | 40.0% | |
| TGGTACAACAAAGTACACCA+TGG | + | chr2.3:981236-981255 | None:intergenic | 40.0% | |
| TGTATTGCAACGCAGTATGT+GGG | - | chr2.3:982411-982430 | MS.gene068388:intron | 40.0% | |
| TTGACAGGAACATAGAATGG+GGG | + | chr2.3:982293-982312 | None:intergenic | 40.0% | |
| TTGGTACTCTGCATGATTTC+TGG | - | chr2.3:982891-982910 | MS.gene068388:CDS | 40.0% | |
| TTGTATTGCAACGCAGTATG+TGG | - | chr2.3:982410-982429 | MS.gene068388:intron | 40.0% | |
| ! | ACCAAGCTTTATCCACTAAG+TGG | + | chr2.3:981104-981123 | None:intergenic | 40.0% |
| ! | AGAAATGGACTTTGTGCAGT+GGG | - | chr2.3:980777-980796 | MS.gene068388:intron | 40.0% |
| ! | CAAGCTTTATCCACTAAGTG+GGG | + | chr2.3:981102-981121 | None:intergenic | 40.0% |
| ! | CCAAGCTTTATCCACTAAGT+GGG | + | chr2.3:981103-981122 | None:intergenic | 40.0% |
| ! | GCTTTAAGTTCCCGTATGTT+TGG | - | chr2.3:981946-981965 | MS.gene068388:intron | 40.0% |
| ! | GTTTGTTTGAGATTCGGCAT+TGG | - | chr2.3:982502-982521 | MS.gene068388:intron | 40.0% |
| ! | TTCTGGTTGTAAACAGCACA+AGG | - | chr2.3:982977-982996 | MS.gene068388:CDS | 40.0% |
| ! | TTGGCTCTTGAATGATGCTT+GGG | + | chr2.3:982574-982593 | None:intergenic | 40.0% |
| !! | ATTGATAGTGTTCTTGCACG+AGG | - | chr2.3:983003-983022 | MS.gene068388:CDS | 40.0% |
| !! | TTGATAGTGTTCTTGCACGA+GGG | - | chr2.3:983004-983023 | MS.gene068388:CDS | 40.0% |
| !! | TTTGGCTCTTGAATGATGCT+TGG | + | chr2.3:982575-982594 | None:intergenic | 40.0% |
| !!! | ACCTCGTGCTAAGCTTTTTT+AGG | - | chr2.3:980920-980939 | MS.gene068388:intron | 40.0% |
| !!! | GATTTGACGGTTACTTTTGC+GGG | + | chr2.3:981591-981610 | None:intergenic | 40.0% |
| !!! | GATTTTAACTGCTGAGGTCA+AGG | - | chr2.3:981629-981648 | MS.gene068388:intron | 40.0% |
| !!! | TTGATGTTGTTTTTCCCCTG+TGG | - | chr2.3:981789-981808 | MS.gene068388:intron | 40.0% |
| AACAACTTATCAGCCTCTGC+AGG | + | chr2.3:982327-982346 | None:intergenic | 45.0% | |
| AACGATGAACTCTTTGACGC+TGG | + | chr2.3:980436-980455 | None:intergenic | 45.0% | |
| ACAACTTATCAGCCTCTGCA+GGG | + | chr2.3:982326-982345 | None:intergenic | 45.0% | |
| ACACCTAAACGTGAAATGCC+CGG | + | chr2.3:981178-981197 | None:intergenic | 45.0% | |
| AGTATCCTCAGCAATACCAG+AGG | + | chr2.3:981336-981355 | None:intergenic | 45.0% | |
| ATACGGGAACTTAAAGCCGT+AGG | + | chr2.3:981943-981962 | None:intergenic | 45.0% | |
| GCTTCATTCAAATAGGGCCA+TGG | + | chr2.3:982114-982133 | None:intergenic | 45.0% | |
| GTAACCGAAGTGACTCACAT+CGG | + | chr2.3:980403-980422 | None:intergenic | 45.0% | |
| GTACACCATGGTGATTGGTA+AGG | + | chr2.3:981224-981243 | None:intergenic | 45.0% | |
| GTAGCTAATCGTACTCCTCA+GGG | - | chr2.3:980471-980490 | MS.gene068388:intron | 45.0% | |
| GTGCATGCGTACAACAGAAA+TGG | - | chr2.3:980762-980781 | MS.gene068388:intron | 45.0% | |
| GTTGAAAATCCAGAGGGAGT+TGG | - | chr2.3:982344-982363 | MS.gene068388:intron | 45.0% | |
| TAAGTTCCCGTATGTTTGGG+TGG | - | chr2.3:981950-981969 | MS.gene068388:intron | 45.0% | |
| TCACATCACGGAGCTATGAA+AGG | + | chr2.3:982622-982641 | None:intergenic | 45.0% | |
| TCACTATCCAGTTCGTAGTG+CGG | - | chr2.3:980812-980831 | MS.gene068388:intron | 45.0% | |
| TGTAGCTAATCGTACTCCTC+AGG | - | chr2.3:980470-980489 | MS.gene068388:intron | 45.0% | |
| TTATCCGCCACCCAAACATA+CGG | + | chr2.3:981960-981979 | None:intergenic | 45.0% | |
| TTATGCCTCTGGTATTGCTG+AGG | - | chr2.3:981328-981347 | MS.gene068388:CDS | 45.0% | |
| ! | CAGAAATGGACTTTGTGCAG+TGG | - | chr2.3:980776-980795 | MS.gene068388:intron | 45.0% |
| ! | CCCACTTAGTGGATAAAGCT+TGG | - | chr2.3:981100-981119 | MS.gene068388:intron | 45.0% |
| ! | GCGGTTTTCTCTTCTCAATC+AGG | - | chr2.3:980831-980850 | MS.gene068388:intron | 45.0% |
| ! | TGATAGTGTTCTTGCACGAG+GGG | - | chr2.3:983005-983024 | MS.gene068388:CDS | 45.0% |
| !! | CTGTTGGTGCTAAAATCCAC+CGG | - | chr2.3:980342-980361 | MS.gene068388:CDS | 45.0% |
| !! | TGAAGAGGCATTTACATGCC+TGG | + | chr2.3:982149-982168 | None:intergenic | 45.0% |
| AGCTTCTTCAAGCTGAGCAG+AGG | + | chr2.3:981392-981411 | None:intergenic | 50.0% | |
| ATATGATGTCCTGCAGGTGC+TGG | - | chr2.3:982029-982048 | MS.gene068388:intron | 50.0% | |
| CTTCTTCAAGCTGAGCAGAG+GGG | + | chr2.3:981390-981409 | None:intergenic | 50.0% | |
| CTTTATCCACTAAGTGGGGC+CGG | + | chr2.3:981098-981117 | None:intergenic | 50.0% | |
| GAGAAAACCGCACTACGAAC+TGG | + | chr2.3:980822-980841 | None:intergenic | 50.0% | |
| GCTTCCGATGTGAGTCACTT+CGG | - | chr2.3:980396-980415 | MS.gene068388:CDS | 50.0% | |
| GCTTCTTCAAGCTGAGCAGA+GGG | + | chr2.3:981391-981410 | None:intergenic | 50.0% | |
| GGCGTATGTGTCCGTGTATT+TGG | + | chr2.3:980685-980704 | None:intergenic | 50.0% | |
| TATACTCATCCAGCACCTGC+AGG | + | chr2.3:982041-982060 | None:intergenic | 50.0% | |
| TATCCGCCACCCAAACATAC+GGG | + | chr2.3:981959-981978 | None:intergenic | 50.0% | |
| TCTGCTCAGCTTGAAGAAGC+TGG | - | chr2.3:981391-981410 | MS.gene068388:intron | 50.0% | |
| TGTCGAAGCAACTCTGCCTA+CGG | - | chr2.3:981924-981943 | MS.gene068388:intron | 50.0% | |
| TTGCCGGGCATTTCACGTTT+AGG | - | chr2.3:981172-981191 | MS.gene068388:intron | 50.0% | |
| TTGTTTCGTCCAACTCCCTC+TGG | + | chr2.3:982356-982375 | None:intergenic | 50.0% | |
| ! | CTTTTGCGGGCATATTCACG+AGG | + | chr2.3:981578-981597 | None:intergenic | 50.0% |
| !! | TGAATCGTGGAGAAGCACTC+AGG | - | chr2.3:982074-982093 | MS.gene068388:intron | 50.0% |
| !!! | GTGTTTGCTGTTTTCGGTCG+CGG | - | chr2.3:980942-980961 | MS.gene068388:intron | 50.0% |
| AAATCTCCAGGACCCTGCAG+AGG | - | chr2.3:982311-982330 | MS.gene068388:intron | 55.0% | |
| AAGTGGGGCCGGCTAAGTAA+CGG | + | chr2.3:981087-981106 | None:intergenic | 55.0% | |
| AGACATGGTGGCAAGCCACA+GGG | + | chr2.3:981807-981826 | None:intergenic | 55.0% | |
| CAGGGTCCTGGAGATTTGAC+AGG | + | chr2.3:982308-982327 | None:intergenic | 55.0% | |
| GTGCTAAAATCCACCGGCGA+CGG | - | chr2.3:980348-980367 | MS.gene068388:CDS | 55.0% | |
| GTTCCCGTATGTTTGGGTGG+CGG | - | chr2.3:981953-981972 | MS.gene068388:intron | 55.0% | |
| ACTTAGCCGGCCCCACTTAG+TGG | - | chr2.3:981089-981108 | MS.gene068388:intron | 60.0% | |
| CACCGGCGACGGTTCAGAAT+CGG | - | chr2.3:980359-980378 | MS.gene068388:CDS | 60.0% | |
| CAGACATGGTGGCAAGCCAC+AGG | + | chr2.3:981808-981827 | None:intergenic | 60.0% | |
| GACATGGTGGCAAGCCACAG+GGG | + | chr2.3:981806-981825 | None:intergenic | 60.0% | |
| TATCAGCCTCTGCAGGGTCC+TGG | + | chr2.3:982320-982339 | None:intergenic | 60.0% | |
| TCTTGCACGAGGGGAGAAGC+TGG | - | chr2.3:983014-983033 | MS.gene068388:CDS | 60.0% | |
| ! | ACGGATTGACGCTGACCCTG+AGG | + | chr2.3:980489-980508 | None:intergenic | 60.0% |
| !! | CACCGATTCTGAACCGTCGC+CGG | + | chr2.3:980364-980383 | None:intergenic | 60.0% |
| CGATTCTGAACCGTCGCCGG+TGG | + | chr2.3:980361-980380 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 980327 | 983080 | 980327 | ID=MS.gene068388 |
| chr2.3 | mRNA | 980327 | 983080 | 980327 | ID=MS.gene068388.t1;Parent=MS.gene068388 |
| chr2.3 | exon | 982888 | 983080 | 982888 | ID=MS.gene068388.t1.exon1;Parent=MS.gene068388.t1 |
| chr2.3 | CDS | 982888 | 983080 | 982888 | ID=cds.MS.gene068388.t1;Parent=MS.gene068388.t1 |
| chr2.3 | exon | 982523 | 982653 | 982523 | ID=MS.gene068388.t1.exon2;Parent=MS.gene068388.t1 |
| chr2.3 | CDS | 982523 | 982653 | 982523 | ID=cds.MS.gene068388.t1;Parent=MS.gene068388.t1 |
| chr2.3 | exon | 981258 | 981362 | 981258 | ID=MS.gene068388.t1.exon3;Parent=MS.gene068388.t1 |
| chr2.3 | CDS | 981258 | 981362 | 981258 | ID=cds.MS.gene068388.t1;Parent=MS.gene068388.t1 |
| chr2.3 | exon | 981021 | 981086 | 981021 | ID=MS.gene068388.t1.exon4;Parent=MS.gene068388.t1 |
| chr2.3 | CDS | 981021 | 981086 | 981021 | ID=cds.MS.gene068388.t1;Parent=MS.gene068388.t1 |
| chr2.3 | exon | 980327 | 980452 | 980327 | ID=MS.gene068388.t1.exon5;Parent=MS.gene068388.t1 |
| chr2.3 | CDS | 980327 | 980452 | 980327 | ID=cds.MS.gene068388.t1;Parent=MS.gene068388.t1 |
| Gene Sequence |
| Protein sequence |
