AlfalfaGEDB | MS.gene072382

M. sativa cultivar XinJiangDaYe / MS.gene072382

KEGG: -
GO: -
PFAM: PF00581.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072382.t1	XP_003625225.1	98.6	208	3	0	1	208	27	234	5.10E-112	413.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072382.t1	O48529	69.5	200	60	1	3	201	30	229	1.1e-78	294.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072382.t1	A2Q4U4	98.6	208	3	0	1	208	27	234	3.7e-112	413.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049346	MS.gene072382	0.813209	2.87E-51	-1.69E-46
MS.gene049351	MS.gene072382	0.83385	4.21E-56	-1.69E-46
MS.gene049427	MS.gene072382	0.821435	4.04E-53	-1.69E-46
MS.gene049609	MS.gene072382	0.801002	1.11E-48	-1.69E-46
MS.gene049661	MS.gene072382	0.84972	2.70E-60	-1.69E-46
MS.gene049662	MS.gene072382	0.84432	8.13E-59	-1.69E-46
MS.gene050301	MS.gene072382	0.850236	1.94E-60	-1.69E-46
MS.gene050397	MS.gene072382	0.818117	2.32E-52	-1.69E-46
MS.gene050406	MS.gene072382	0.800334	1.51E-48	-1.69E-46
MS.gene050432	MS.gene072382	0.869486	2.99E-66	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072382.t1	MTR_7g092820	98.558	208	3	0	1	208	27	234	1.14e-153	425
MS.gene072382.t1	MTR_4g015860	34.177	158	102	2	13	168	50	207	2.89e-25	98.6
MS.gene072382.t1	MTR_3g075540	25.882	170	125	1	6	174	70	239	5.05e-14	69.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072382.t1	AT2G42220	68.812	202	62	1	1	201	28	229	1.06e-105	304
MS.gene072382.t1	AT3G08920	36.478	159	99	2	13	169	37	195	1.28e-29	109
MS.gene072382.t1	AT4G24750	29.747	158	109	2	18	174	85	241	4.04e-17	78.2

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Find 36 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGAACTTGTAAAAGTAGA+TGG	0.379059	7.4:+16011881	MS.gene072382:CDS
AATAAGAACAGTTCCCAACA+CGG	0.674863	7.4:-16014186	None:intergenic
AATGTAGCATGCATAACATC+TGG	0.456689	7.4:+16013973	MS.gene072382:CDS
ACAATCAAGAGTTTAGTTTC+AGG	0.345374	7.4:-16012479	None:intergenic
ACAATGCAAGGAGCATGCCA+GGG	0.648008	7.4:+16011780	None:intergenic
AGCAGAGAAGCTGATCCAAC+TGG	0.489566	7.4:+16014320	MS.gene072382:CDS
ATATAATGTTCTTGATGTGA+GGG	0.640539	7.4:+16011904	MS.gene072382:CDS
ATCAGCTTCTCTGCTTGATC+AGG	0.390870	7.4:-16014312	None:intergenic
ATGTTATGCATGCTACATTT+TGG	0.221380	7.4:-16013969	None:intergenic
ATTTGATTCTGTTGGCTCGA+CGG	0.538513	7.4:+16014109	MS.gene072382:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGGACAAATGTGATGAA+GGG	+	chr7.4:16012208-16012227	MS.gene072382:intron	30.0%
AAGGAACTTGTAAAAGTAGA+TGG	+	chr7.4:16011881-16011900	MS.gene072382:CDS	30.0%
AATTAGCAATCAAAATGGGT+AGG	-	chr7.4:16012538-16012557	None:intergenic	30.0%
AGAGCATATGATCACATTTA+TGG	-	chr7.4:16012764-16012783	None:intergenic	30.0%
AGCCTCTCATGTAAAAAAAT+AGG	-	chr7.4:16013525-16013544	None:intergenic	30.0%
ATAGAAATTTAGGTATGGGT+GGG	+	chr7.4:16013718-16013737	MS.gene072382:intron	30.0%
CATAATGATGGTATAGTACA+TGG	-	chr7.4:16012662-16012681	None:intergenic	30.0%
CTACCTAATATTGAGAAACA+TGG	+	chr7.4:16012720-16012739	MS.gene072382:intron	30.0%
GAAATTGACATGATCTGAAT+TGG	-	chr7.4:16013220-16013239	None:intergenic	30.0%
GATATAATGTTCTTGATGTG+AGG	+	chr7.4:16011903-16011922	MS.gene072382:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	16011794	16014356	16011794	ID=MS.gene072382
chr7.4	mRNA	16011794	16014356	16011794	ID=MS.gene072382.t1;Parent=MS.gene072382
chr7.4	exon	16011794	16012007	16011794	ID=MS.gene072382.t1.exon1;Parent=MS.gene072382.t1
chr7.4	CDS	16011794	16012007	16011794	ID=cds.MS.gene072382.t1;Parent=MS.gene072382.t1
chr7.4	exon	16012369	16012519	16012369	ID=MS.gene072382.t1.exon2;Parent=MS.gene072382.t1
chr7.4	CDS	16012369	16012519	16012369	ID=cds.MS.gene072382.t1;Parent=MS.gene072382.t1
chr7.4	exon	16013930	16014015	16013930	ID=MS.gene072382.t1.exon3;Parent=MS.gene072382.t1
chr7.4	CDS	16013930	16014015	16013930	ID=cds.MS.gene072382.t1;Parent=MS.gene072382.t1
chr7.4	exon	16014105	16014209	16014105	ID=MS.gene072382.t1.exon4;Parent=MS.gene072382.t1
chr7.4	CDS	16014105	16014209	16014105	ID=cds.MS.gene072382.t1;Parent=MS.gene072382.t1
chr7.4	exon	16014286	16014356	16014286	ID=MS.gene072382.t1.exon5;Parent=MS.gene072382.t1
chr7.4	CDS	16014286	16014356	16014286	ID=cds.MS.gene072382.t1;Parent=MS.gene072382.t1

Gene Sequence

>MS.gene072382

ATGCCAGGGAAGCTAGTATCTCAATGTAAAATGAGAAGGAAGTTTACAATAAAAGCAGAAATTAAGTTTGTAACAGCTGATGATGCTAAGGAACTTGTAAAAGTAGATGGATATAATGTTCTTGATGTGAGGGACAAATCTCAATATGAAAGAGCACACATTAAAACATGTTATCATGTTCCTCTTTTTGTTGAAAATACAGACAATGATCCTGGTATGGAATTTCTCCTTCCAAAATTATTTATACTATGCATATTTATTAATTTTTATATTCAGTGTATCATTATTTTAGTTTTAAAATTGTAGGATAAGACAAATTAGTTTTCTAGAATTAATAAACATTTTAACATTAATCTGGAACTTAAAATCCTTAAGTCACATTTATCCCTCCGGGACAATTTCAATGACCCGTCCAAATGGACAAATGTGATGAAGGGTTTTCATCTTAAAATTTTGTTGATTTTAGATACAAAATTATTTCATCCCTACAACTTCCAGGACCAGGACTAAAATATGGATTCATTTTTTTTTTTTTTTTACTTTTTGTAATGCTTCATTGCATTGATTTTGTGTAGGTACATTCTTATTAAGGACTGTGCACAATAATTTTTCTGGGTTGTTCTTTGGGATACCATTCACTAGGCCAAACCCTGATTTCGTGCAATCTGTGAAGAGTCAAATACAGCCTGAAACTAAACTCTTGATTGTTTGTCAGGAAGGATTGAGGTTAGTTTATGATTTCCTACCCATTTTGATTGCTAATTATATATCCCAAACTTTCATGAAGATCCCGACTCTGCTTTTGGTTTGGTTAGTCTTTAATCTTTATATGATTAGCTTGCAAAATTACATTTTCTGAACATGACCATGTACTATACCATCATTATGTACAGTCTAAAAAGAGATACATAGATAAAGGTTTTGTGCTACCTAATATTGAGAAACATGGGAAAGTAAAAGAGAGTTACCATAAATGTGATCATATGCTCTAGTCTAGAACCAAGAATCTAATAGAGACGAGTAAAACGCATAGCAGTATTACCAGAATGTAGGCAATGGATGAGGATAAATATTGTGATACTTGATACCTTGGATAATCAGTGATTCAGTTCCGACTAGTGTGAGAGAATGCTACCACGGAGGGCTACTTTGGCTGCATGGACAAAGTCTCGTTATTGTGCTCAATGAACATAGGAAGATGGCTCTGTAATTTTGTATGTTCCCATCTGTGACATTAAGTACACTTCCGATGCAGTACCTGACTTCTTGGTGGTAGGATAAAAGATCCTGAAAGCCTTCGCGGTGGATGATGGAGATACTGTTTATCGAATGAAGAAAATAAGCCAATTGTTATAATATGAGGATATAGTAGCTTTTAGATAAAATAAGCCAACTGCAGAAATGATACCAGCACAAAAATAAACCAATTCAGATCATGTCAATTTCCACAATATTCAAAAATGAATTTCAACATAGTGAACTGTCATAAATGCATCTGCTCCTATTACATGAAACTCCTACGCCCAATATCCGAGAATGATACCGATAACCCAAATAGGACAGAACCTCCACAATGACGAGGACGTGGGAAGTTATCCGAGGTAACCTCCAATCACAACCAGAGGGATGAAACAACGTGCTCAATATAAAAAGACATTTATTAAAGCTCCCGAATACGTAGGGTCCGGAAAGGGGTCTCACCATTTGGTGTATTGTACGCAACCTTACCCTATTTTTTTACATGAGAGGCTGTTTCTAGCACTTGAACCTGTGACATTTCAATCACATGACAACAATTGTACCGTTGCGCCAAGGCTCCCCCTCACAAAAGGACACTTATTATTTACCCAAAAACTAAACACCTTGGGCCTTGATCTTGGCACGTCGCTGGCAAGGTCTATCATGTAATACATAGCAAGAACACATAGAAATTTAGGTATGGGTGGGAATTACTAATTTGAAGTTCGGAACCAAAACAGTGTTTTTTTTTATAAATTTGTAAGGATATTTGTGTCACATTAGCAAATAAGTTGAGTTTCCACAAGAAGCAAAAAATCCTATGAATTTTCATAACTTGAATTTTTGTTGTTGCCTTGAGATGTAATTTGAAGATTTAATTTTTCCTTCTTTGTCAAGGTCTGCTGCAGCAGCAAATAAGTTAGAGGATGCTGGTTTCCAAAATGTAGCATGCATAACATCTGGACTTCAAACTGTGAAACCAGGTTTAGTTAATCATTGATTTTATTTTATTAAATTTTTTAATTTTCGTTTATCTTTTAAGAATAATAATTAAAATATATCCATTCTGTAGGGACATTTGATTCTGTTGGCTCGACGGAGTTGCAGAATGCTGGCAAAGCTGGTTTGGTGCAAATCCAAGGAAAAATTTCAGCCGTGTTGGGAACTGTTCTTATTTGTAAGTTTTTCAATATCTTCTGTAACAATTTCATGATGCTTGCTTGTATTGAATTTCTGTTTTATGAAATTTTCAGGTGCATATTTATTCATTACCTTCTTTCCTGATCAAGCAGAGAAGCTGATCCAACTGGTCCCTTCAGGCTAA

Protein sequence

>MS.gene072382.t1

MPGKLVSQCKMRRKFTIKAEIKFVTADDAKELVKVDGYNVLDVRDKSQYERAHIKTCYHVPLFVENTDNDPGTFLLRTVHNNFSGLFFGIPFTRPNPDFVQSVKSQIQPETKLLIVCQEGLRSAAAANKLEDAGFQNVACITSGLQTVKPGTFDSVGSTELQNAGKAGLVQIQGKISAVLGTVLICAYLFITFFPDQAEKLIQLVPSG