Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072382.t1 | XP_003625225.1 | 98.6 | 208 | 3 | 0 | 1 | 208 | 27 | 234 | 5.10E-112 | 413.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072382.t1 | O48529 | 69.5 | 200 | 60 | 1 | 3 | 201 | 30 | 229 | 1.1e-78 | 294.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072382.t1 | A2Q4U4 | 98.6 | 208 | 3 | 0 | 1 | 208 | 27 | 234 | 3.7e-112 | 413.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049346 | MS.gene072382 | 0.813209 | 2.87E-51 | -1.69E-46 |
| MS.gene049351 | MS.gene072382 | 0.83385 | 4.21E-56 | -1.69E-46 |
| MS.gene049427 | MS.gene072382 | 0.821435 | 4.04E-53 | -1.69E-46 |
| MS.gene049609 | MS.gene072382 | 0.801002 | 1.11E-48 | -1.69E-46 |
| MS.gene049661 | MS.gene072382 | 0.84972 | 2.70E-60 | -1.69E-46 |
| MS.gene049662 | MS.gene072382 | 0.84432 | 8.13E-59 | -1.69E-46 |
| MS.gene050301 | MS.gene072382 | 0.850236 | 1.94E-60 | -1.69E-46 |
| MS.gene050397 | MS.gene072382 | 0.818117 | 2.32E-52 | -1.69E-46 |
| MS.gene050406 | MS.gene072382 | 0.800334 | 1.51E-48 | -1.69E-46 |
| MS.gene050432 | MS.gene072382 | 0.869486 | 2.99E-66 | -1.69E-46 |
| MS.gene050670 | MS.gene072382 | 0.818104 | 2.33E-52 | -1.69E-46 |
| MS.gene050767 | MS.gene072382 | 0.828356 | 9.41E-55 | -1.69E-46 |
| MS.gene050770 | MS.gene072382 | 0.828305 | 9.68E-55 | -1.69E-46 |
| MS.gene050783 | MS.gene072382 | 0.81547 | 9.10E-52 | -1.69E-46 |
| MS.gene05101 | MS.gene072382 | 0.852633 | 4.06E-61 | -1.69E-46 |
| MS.gene05105 | MS.gene072382 | 0.851085 | 1.12E-60 | -1.69E-46 |
| MS.gene051255 | MS.gene072382 | 0.809792 | 1.59E-50 | -1.69E-46 |
| MS.gene051387 | MS.gene072382 | 0.804695 | 1.91E-49 | -1.69E-46 |
| MS.gene051582 | MS.gene072382 | 0.828798 | 7.36E-55 | -1.69E-46 |
| MS.gene052078 | MS.gene072382 | 0.817013 | 4.11E-52 | -1.69E-46 |
| MS.gene052188 | MS.gene072382 | 0.802735 | 4.87E-49 | -1.69E-46 |
| MS.gene052253 | MS.gene072382 | 0.841275 | 5.24E-58 | -1.69E-46 |
| MS.gene052310 | MS.gene072382 | 0.840051 | 1.10E-57 | -1.69E-46 |
| MS.gene052322 | MS.gene072382 | 0.847005 | 1.52E-59 | -1.69E-46 |
| MS.gene052326 | MS.gene072382 | 0.802668 | 5.03E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene072382 | 0.812178 | 4.83E-51 | -1.69E-46 |
| MS.gene052421 | MS.gene072382 | 0.826699 | 2.35E-54 | -1.69E-46 |
| MS.gene052481 | MS.gene072382 | 0.823761 | 1.16E-53 | -1.69E-46 |
| MS.gene052485 | MS.gene072382 | 0.824519 | 7.73E-54 | -1.69E-46 |
| MS.gene052508 | MS.gene072382 | 0.80554 | 1.27E-49 | -1.69E-46 |
| MS.gene052982 | MS.gene072382 | 0.820018 | 8.56E-53 | -1.69E-46 |
| MS.gene053009 | MS.gene072382 | 0.801775 | 7.68E-49 | -1.69E-46 |
| MS.gene053207 | MS.gene072382 | 0.80552 | 1.28E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene072382 | 0.865466 | 5.79E-65 | -1.69E-46 |
| MS.gene053557 | MS.gene072382 | 0.806508 | 7.95E-50 | -1.69E-46 |
| MS.gene053813 | MS.gene072382 | 0.813826 | 2.10E-51 | -1.69E-46 |
| MS.gene053836 | MS.gene072382 | 0.806267 | 8.94E-50 | -1.69E-46 |
| MS.gene053928 | MS.gene072382 | 0.806524 | 7.89E-50 | -1.69E-46 |
| MS.gene054010 | MS.gene072382 | 0.801082 | 1.07E-48 | -1.69E-46 |
| MS.gene054011 | MS.gene072382 | 0.809318 | 2.01E-50 | -1.69E-46 |
| MS.gene054376 | MS.gene072382 | 0.850704 | 1.43E-60 | -1.69E-46 |
| MS.gene054802 | MS.gene072382 | 0.81381 | 2.12E-51 | -1.69E-46 |
| MS.gene054803 | MS.gene072382 | 0.80991 | 1.50E-50 | -1.69E-46 |
| MS.gene054804 | MS.gene072382 | 0.816163 | 6.37E-52 | -1.69E-46 |
| MS.gene054918 | MS.gene072382 | 0.817751 | 2.80E-52 | -1.69E-46 |
| MS.gene05505 | MS.gene072382 | 0.800375 | 1.48E-48 | -1.69E-46 |
| MS.gene055116 | MS.gene072382 | 0.882798 | 7.70E-71 | -1.69E-46 |
| MS.gene055277 | MS.gene072382 | 0.862839 | 3.81E-64 | -1.69E-46 |
| MS.gene055422 | MS.gene072382 | 0.81928 | 1.26E-52 | -1.69E-46 |
| MS.gene055428 | MS.gene072382 | 0.8366 | 8.51E-57 | -1.69E-46 |
| MS.gene055564 | MS.gene072382 | 0.831513 | 1.60E-55 | -1.69E-46 |
| MS.gene055604 | MS.gene072382 | 0.802512 | 5.42E-49 | -1.69E-46 |
| MS.gene055722 | MS.gene072382 | 0.804211 | 2.41E-49 | -1.69E-46 |
| MS.gene05594 | MS.gene072382 | 0.801336 | 9.45E-49 | -1.69E-46 |
| MS.gene056191 | MS.gene072382 | 0.843988 | 9.98E-59 | -1.69E-46 |
| MS.gene056407 | MS.gene072382 | 0.840865 | 6.72E-58 | -1.69E-46 |
| MS.gene056410 | MS.gene072382 | 0.805012 | 1.64E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene072382 | 0.807649 | 4.56E-50 | -1.69E-46 |
| MS.gene057011 | MS.gene072382 | 0.805723 | 1.16E-49 | -1.69E-46 |
| MS.gene05702 | MS.gene072382 | 0.872649 | 2.70E-67 | -1.69E-46 |
| MS.gene057124 | MS.gene072382 | 0.832472 | 9.27E-56 | -1.69E-46 |
| MS.gene057129 | MS.gene072382 | 0.803171 | 3.96E-49 | -1.69E-46 |
| MS.gene057331 | MS.gene072382 | 0.824679 | 7.08E-54 | -1.69E-46 |
| MS.gene057416 | MS.gene072382 | 0.806674 | 7.33E-50 | -1.69E-46 |
| MS.gene057448 | MS.gene072382 | 0.804451 | 2.15E-49 | -1.69E-46 |
| MS.gene057449 | MS.gene072382 | 0.808314 | 3.29E-50 | -1.69E-46 |
| MS.gene057450 | MS.gene072382 | 0.803496 | 3.39E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene072382 | 0.829308 | 5.54E-55 | -1.69E-46 |
| MS.gene057823 | MS.gene072382 | 0.819201 | 1.31E-52 | -1.69E-46 |
| MS.gene057825 | MS.gene072382 | 0.801957 | 7.05E-49 | -1.69E-46 |
| MS.gene058002 | MS.gene072382 | 0.831178 | 1.93E-55 | -1.69E-46 |
| MS.gene05811 | MS.gene072382 | 0.8036 | 3.23E-49 | -1.69E-46 |
| MS.gene058233 | MS.gene072382 | 0.80487 | 1.76E-49 | -1.69E-46 |
| MS.gene058293 | MS.gene072382 | 0.81608 | 6.65E-52 | -1.69E-46 |
| MS.gene058660 | MS.gene072382 | 0.843932 | 1.03E-58 | -1.69E-46 |
| MS.gene05886 | MS.gene072382 | 0.838791 | 2.33E-57 | -1.69E-46 |
| MS.gene058995 | MS.gene072382 | 0.809555 | 1.79E-50 | -1.69E-46 |
| MS.gene05907 | MS.gene072382 | 0.831597 | 1.53E-55 | -1.69E-46 |
| MS.gene059141 | MS.gene072382 | 0.802194 | 6.30E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene072382 | 0.813463 | 2.53E-51 | -1.69E-46 |
| MS.gene059536 | MS.gene072382 | 0.800161 | 1.64E-48 | -1.69E-46 |
| MS.gene059676 | MS.gene072382 | 0.805538 | 1.27E-49 | -1.69E-46 |
| MS.gene059688 | MS.gene072382 | 0.873454 | 1.45E-67 | -1.69E-46 |
| MS.gene059692 | MS.gene072382 | 0.869977 | 2.07E-66 | -1.69E-46 |
| MS.gene059695 | MS.gene072382 | 0.869937 | 2.13E-66 | -1.69E-46 |
| MS.gene059711 | MS.gene072382 | 0.803078 | 4.14E-49 | -1.69E-46 |
| MS.gene059894 | MS.gene072382 | 0.810283 | 1.25E-50 | -1.69E-46 |
| MS.gene059960 | MS.gene072382 | 0.800346 | 1.50E-48 | -1.69E-46 |
| MS.gene059974 | MS.gene072382 | 0.827594 | 1.44E-54 | -1.69E-46 |
| MS.gene06037 | MS.gene072382 | 0.859055 | 5.39E-63 | -1.69E-46 |
| MS.gene060403 | MS.gene072382 | 0.857456 | 1.61E-62 | -1.69E-46 |
| MS.gene060469 | MS.gene072382 | 0.809108 | 2.23E-50 | -1.69E-46 |
| MS.gene060804 | MS.gene072382 | 0.805685 | 1.18E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene072382 | 0.815386 | 9.49E-52 | -1.69E-46 |
| MS.gene061049 | MS.gene072382 | 0.845959 | 2.93E-59 | -1.69E-46 |
| MS.gene061154 | MS.gene072382 | 0.813231 | 2.84E-51 | -1.69E-46 |
| MS.gene061200 | MS.gene072382 | 0.800634 | 1.31E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072382.t1 | MTR_7g092820 | 98.558 | 208 | 3 | 0 | 1 | 208 | 27 | 234 | 1.14e-153 | 425 |
| MS.gene072382.t1 | MTR_4g015860 | 34.177 | 158 | 102 | 2 | 13 | 168 | 50 | 207 | 2.89e-25 | 98.6 |
| MS.gene072382.t1 | MTR_3g075540 | 25.882 | 170 | 125 | 1 | 6 | 174 | 70 | 239 | 5.05e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072382.t1 | AT2G42220 | 68.812 | 202 | 62 | 1 | 1 | 201 | 28 | 229 | 1.06e-105 | 304 |
| MS.gene072382.t1 | AT3G08920 | 36.478 | 159 | 99 | 2 | 13 | 169 | 37 | 195 | 1.28e-29 | 109 |
| MS.gene072382.t1 | AT4G24750 | 29.747 | 158 | 109 | 2 | 18 | 174 | 85 | 241 | 4.04e-17 | 78.2 |
Find 36 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTATGCATGCTACATTT+TGG | 0.221380 | 7.4:-16013969 | None:intergenic |
| GTGTAGGTACATTCTTATTA+AGG | 0.261610 | 7.4:+16012363 | MS.gene072382:intron |
| TTCACAGATTGCACGAAATC+AGG | 0.282153 | 7.4:-16012443 | None:intergenic |
| ACAATCAAGAGTTTAGTTTC+AGG | 0.345374 | 7.4:-16012479 | None:intergenic |
| TAAACTCTTGATTGTTTGTC+AGG | 0.363215 | 7.4:+16012487 | MS.gene072382:CDS |
| AAGGAACTTGTAAAAGTAGA+TGG | 0.379059 | 7.4:+16011881 | MS.gene072382:CDS |
| CTGATCCAACTGGTCCCTTC+AGG | 0.389584 | 7.4:+16014330 | MS.gene072382:CDS |
| ATCAGCTTCTCTGCTTGATC+AGG | 0.390870 | 7.4:-16014312 | None:intergenic |
| CACAATGCAAGGAGCATGCC+AGG | 0.391332 | 7.4:+16011779 | None:intergenic |
| GAATGCTGGCAAAGCTGGTT+TGG | 0.410102 | 7.4:+16014139 | MS.gene072382:CDS |
| TGCAGCAGCAAATAAGTTAG+AGG | 0.420677 | 7.4:+16013936 | MS.gene072382:CDS |
| TTGCAGAATGCTGGCAAAGC+TGG | 0.432034 | 7.4:+16014134 | MS.gene072382:CDS |
| GTAGGGACATTTGATTCTGT+TGG | 0.435570 | 7.4:+16014101 | MS.gene072382:intron |
| CTCTTGATTGTTTGTCAGGA+AGG | 0.443131 | 7.4:+16012491 | MS.gene072382:CDS |
| AATGTAGCATGCATAACATC+TGG | 0.456689 | 7.4:+16013973 | MS.gene072382:CDS |
| CATTGAGATACTAGCTTCCC+TGG | 0.458379 | 7.4:-16011797 | None:intergenic |
| GATTGCACGAAATCAGGGTT+TGG | 0.467808 | 7.4:-16012437 | None:intergenic |
| TCGACGGAGTTGCAGAATGC+TGG | 0.475813 | 7.4:+16014125 | MS.gene072382:CDS |
| AGCAGAGAAGCTGATCCAAC+TGG | 0.489566 | 7.4:+16014320 | MS.gene072382:CDS |
| GCAAATAAGTTAGAGGATGC+TGG | 0.503197 | 7.4:+16013943 | MS.gene072382:CDS |
| TCAGGGTTTGGCCTAGTGAA+TGG | 0.517866 | 7.4:-16012425 | None:intergenic |
| GAAAATACAGACAATGATCC+TGG | 0.526626 | 7.4:+16011986 | MS.gene072382:CDS |
| CTCTGCTTGATCAGGAAAGA+AGG | 0.530924 | 7.4:-16014304 | None:intergenic |
| ATTTGATTCTGTTGGCTCGA+CGG | 0.538513 | 7.4:+16014109 | MS.gene072382:CDS |
| TTGTTTGTCAGGAAGGATTG+AGG | 0.546160 | 7.4:+16012498 | MS.gene072382:CDS |
| TCACAGATTGCACGAAATCA+GGG | 0.549040 | 7.4:-16012442 | None:intergenic |
| CTTAGCCTGAAGGGACCAGT+TGG | 0.559659 | 7.4:-16014335 | None:intergenic |
| TGTAACAGCTGATGATGCTA+AGG | 0.563299 | 7.4:+16011862 | MS.gene072382:CDS |
| GCTGGTTTGGTGCAAATCCA+AGG | 0.574370 | 7.4:+16014152 | MS.gene072382:CDS |
| TATCTCAATGTAAAATGAGA+AGG | 0.578861 | 7.4:+16011810 | MS.gene072382:CDS |
| TCTTTGGGATACCATTCACT+AGG | 0.582807 | 7.4:+16012414 | MS.gene072382:CDS |
| GATATAATGTTCTTGATGTG+AGG | 0.619269 | 7.4:+16011903 | MS.gene072382:CDS |
| GGACTTCAAACTGTGAAACC+AGG | 0.620690 | 7.4:+16013994 | MS.gene072382:CDS |
| ATATAATGTTCTTGATGTGA+GGG | 0.640539 | 7.4:+16011904 | MS.gene072382:CDS |
| ACAATGCAAGGAGCATGCCA+GGG | 0.648008 | 7.4:+16011780 | None:intergenic |
| AATAAGAACAGTTCCCAACA+CGG | 0.674863 | 7.4:-16014186 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTAGTTTTAAAATTGT+AGG | + | chr7.4:16012078-16012097 | MS.gene072382:intron | 10.0% |
| !! | ATATAATTAGCAATCAAAAT+GGG | - | chr7.4:16012542-16012561 | None:intergenic | 15.0% |
| !! | TATATAATTAGCAATCAAAA+TGG | - | chr7.4:16012543-16012562 | None:intergenic | 15.0% |
| !!! | AAATTCATTTTTGAATATTG+TGG | - | chr7.4:16013242-16013261 | None:intergenic | 15.0% |
| !!! | ATAGTATAAATAATTTTGGA+AGG | - | chr7.4:16012024-16012043 | None:intergenic | 15.0% |
| !!! | ATGCATAGTATAAATAATTT+TGG | - | chr7.4:16012028-16012047 | None:intergenic | 15.0% |
| !!! | TAAACATTTTAACATTAATC+TGG | + | chr7.4:16012129-16012148 | MS.gene072382:intron | 15.0% |
| !!! | TATAAAAAAAAACACTGTTT+TGG | - | chr7.4:16013767-16013786 | None:intergenic | 15.0% |
| !! | AAAAAGAGATACATAGATAA+AGG | + | chr7.4:16012690-16012709 | MS.gene072382:intron | 20.0% |
| !! | TAAAATATATCCATTCTGTA+GGG | + | chr7.4:16014084-16014103 | MS.gene072382:intron | 20.0% |
| !! | TATCCTCATATTATAACAAT+TGG | - | chr7.4:16013140-16013159 | None:intergenic | 20.0% |
| !! | TTAAAATATATCCATTCTGT+AGG | + | chr7.4:16014083-16014102 | MS.gene072382:intron | 20.0% |
| !!! | TTCAAGTTATGAAAATTCAT+AGG | - | chr7.4:16013853-16013872 | None:intergenic | 20.0% |
| !!! | TTCTGTTTTATGAAATTTTC+AGG | + | chr7.4:16014264-16014283 | MS.gene072382:intron | 20.0% |
| ! | AACACATAGAAATTTAGGTA+TGG | + | chr7.4:16013713-16013732 | MS.gene072382:intron | 25.0% |
| ! | AAGCCAATTGTTATAATATG+AGG | + | chr7.4:16013134-16013153 | MS.gene072382:intron | 25.0% |
| ! | AATCAATGATTAACTAAACC+TGG | - | chr7.4:16014015-16014034 | None:intergenic | 25.0% |
| ! | AATCTTCAAATTACATCTCA+AGG | - | chr7.4:16013888-16013907 | None:intergenic | 25.0% |
| ! | ACACATAGAAATTTAGGTAT+GGG | + | chr7.4:16013714-16013733 | MS.gene072382:intron | 25.0% |
| ! | ATATAATGTTCTTGATGTGA+GGG | + | chr7.4:16011904-16011923 | MS.gene072382:CDS | 25.0% |
| ! | TACCTAATATTGAGAAACAT+GGG | + | chr7.4:16012721-16012740 | MS.gene072382:intron | 25.0% |
| ! | TATCTCAATGTAAAATGAGA+AGG | + | chr7.4:16011810-16011829 | MS.gene072382:CDS | 25.0% |
| ! | TCATGTAAAAAAATAGGGTA+AGG | - | chr7.4:16013519-16013538 | None:intergenic | 25.0% |
| !! | GGAATTACTAATTTGAAGTT+CGG | + | chr7.4:16013739-16013758 | MS.gene072382:intron | 25.0% |
| !! | TAATTTTTCCTTCTTTGTCA+AGG | + | chr7.4:16013908-16013927 | MS.gene072382:intron | 25.0% |
| !! | TCTGTATTTTCAACAAAAAG+AGG | - | chr7.4:16011977-16011996 | None:intergenic | 25.0% |
| !! | TTTTAGACTGTACATAATGA+TGG | - | chr7.4:16012674-16012693 | None:intergenic | 25.0% |
| AAATGGACAAATGTGATGAA+GGG | + | chr7.4:16012208-16012227 | MS.gene072382:intron | 30.0% | |
| AAGGAACTTGTAAAAGTAGA+TGG | + | chr7.4:16011881-16011900 | MS.gene072382:CDS | 30.0% | |
| AATTAGCAATCAAAATGGGT+AGG | - | chr7.4:16012538-16012557 | None:intergenic | 30.0% | |
| AGAGCATATGATCACATTTA+TGG | - | chr7.4:16012764-16012783 | None:intergenic | 30.0% | |
| AGCCTCTCATGTAAAAAAAT+AGG | - | chr7.4:16013525-16013544 | None:intergenic | 30.0% | |
| ATAGAAATTTAGGTATGGGT+GGG | + | chr7.4:16013718-16013737 | MS.gene072382:intron | 30.0% | |
| CATAATGATGGTATAGTACA+TGG | - | chr7.4:16012662-16012681 | None:intergenic | 30.0% | |
| CTACCTAATATTGAGAAACA+TGG | + | chr7.4:16012720-16012739 | MS.gene072382:intron | 30.0% | |
| GAAATTGACATGATCTGAAT+TGG | - | chr7.4:16013220-16013239 | None:intergenic | 30.0% | |
| GATATAATGTTCTTGATGTG+AGG | + | chr7.4:16011903-16011922 | MS.gene072382:CDS | 30.0% | |
| GCAAGAACACATAGAAATTT+AGG | + | chr7.4:16013708-16013727 | MS.gene072382:intron | 30.0% | |
| GCCTCTCATGTAAAAAAATA+GGG | - | chr7.4:16013524-16013543 | None:intergenic | 30.0% | |
| GTGTAGGTACATTCTTATTA+AGG | + | chr7.4:16012363-16012382 | MS.gene072382:intron | 30.0% | |
| TAAACTCTTGATTGTTTGTC+AGG | + | chr7.4:16012487-16012506 | MS.gene072382:CDS | 30.0% | |
| TATTGTGATACTTGATACCT+TGG | + | chr7.4:16012864-16012883 | MS.gene072382:intron | 30.0% | |
| TTATTGTGCTCAATGAACAT+AGG | + | chr7.4:16012966-16012985 | MS.gene072382:intron | 30.0% | |
| TTCCCATGTTTCTCAATATT+AGG | - | chr7.4:16012726-16012745 | None:intergenic | 30.0% | |
| ! | AATTTTTCTGGGTTGTTCTT+TGG | + | chr7.4:16012398-16012417 | MS.gene072382:CDS | 30.0% |
| ! | ACAATCAAGAGTTTAGTTTC+AGG | - | chr7.4:16012482-16012501 | None:intergenic | 30.0% |
| ! | ACTGTGCACAATAATTTTTC+TGG | + | chr7.4:16012386-16012405 | MS.gene072382:CDS | 30.0% |
| ! | ATAATAAGTGTCCTTTTGTG+AGG | - | chr7.4:16013617-16013636 | None:intergenic | 30.0% |
| ! | ATGTTATGCATGCTACATTT+TGG | - | chr7.4:16013972-16013991 | None:intergenic | 30.0% |
| ! | ATTTTTCTGGGTTGTTCTTT+GGG | + | chr7.4:16012399-16012418 | MS.gene072382:CDS | 30.0% |
| ! | CTGTGCACAATAATTTTTCT+GGG | + | chr7.4:16012387-16012406 | MS.gene072382:CDS | 30.0% |
| ! | TAATAAGTGTCCTTTTGTGA+GGG | - | chr7.4:16013616-16013635 | None:intergenic | 30.0% |
| !!! | ACCCTATTTTTTTACATGAG+AGG | + | chr7.4:16013520-16013539 | MS.gene072382:intron | 30.0% |
| !!! | ATAGGATTTTTTGCTTCTTG+TGG | - | chr7.4:16013835-16013854 | None:intergenic | 30.0% |
| !!! | ATGAATCCATATTTTAGTCC+TGG | - | chr7.4:16012297-16012316 | None:intergenic | 30.0% |
| !!! | GAATTGGTTTATTTTTGTGC+TGG | - | chr7.4:16013204-16013223 | None:intergenic | 30.0% |
| !!! | TCATTGCATTGATTTTGTGT+AGG | + | chr7.4:16012347-16012366 | MS.gene072382:intron | 30.0% |
| AATAAGAACAGTTCCCAACA+CGG | - | chr7.4:16014189-16014208 | None:intergenic | 35.0% | |
| AATCAAATGTCCCTACAGAA+TGG | - | chr7.4:16014097-16014116 | None:intergenic | 35.0% | |
| AATGTAGCATGCATAACATC+TGG | + | chr7.4:16013973-16013992 | MS.gene072382:CDS | 35.0% | |
| ACCCAAAAACTAAACACCTT+GGG | + | chr7.4:16013639-16013658 | MS.gene072382:intron | 35.0% | |
| ACTCGTCTCTATTAGATTCT+TGG | - | chr7.4:16012796-16012815 | None:intergenic | 35.0% | |
| AGTGTACTTAATGTCACAGA+TGG | - | chr7.4:16013019-16013038 | None:intergenic | 35.0% | |
| ATCACATTTGTCCATTTGGA+CGG | - | chr7.4:16012205-16012224 | None:intergenic | 35.0% | |
| ATGATACCGATAACCCAAAT+AGG | + | chr7.4:16013330-16013349 | MS.gene072382:intron | 35.0% | |
| CAAATGGACAAATGTGATGA+AGG | + | chr7.4:16012207-16012226 | MS.gene072382:intron | 35.0% | |
| CATAGAAATTTAGGTATGGG+TGG | + | chr7.4:16013717-16013736 | MS.gene072382:intron | 35.0% | |
| CTTCATCACATTTGTCCATT+TGG | - | chr7.4:16012209-16012228 | None:intergenic | 35.0% | |
| GAAAATACAGACAATGATCC+TGG | + | chr7.4:16011986-16012005 | MS.gene072382:CDS | 35.0% | |
| GTGTACTTAATGTCACAGAT+GGG | - | chr7.4:16013018-16013037 | None:intergenic | 35.0% | |
| TACCCAAAAACTAAACACCT+TGG | + | chr7.4:16013638-16013657 | MS.gene072382:intron | 35.0% | |
| TAGCAGTATTACCAGAATGT+AGG | + | chr7.4:16012824-16012843 | MS.gene072382:intron | 35.0% | |
| TATTACCAGAATGTAGGCAA+TGG | + | chr7.4:16012830-16012849 | MS.gene072382:intron | 35.0% | |
| TCATGTGATTGAAATGTCAC+AGG | - | chr7.4:16013564-16013583 | None:intergenic | 35.0% | |
| TTAAGTCACATTTATCCCTC+CGG | + | chr7.4:16012164-16012183 | MS.gene072382:intron | 35.0% | |
| ! | AATAAGTGTCCTTTTGTGAG+GGG | - | chr7.4:16013615-16013634 | None:intergenic | 35.0% |
| ! | ACTGAATCACTGATTATCCA+AGG | - | chr7.4:16012884-16012903 | None:intergenic | 35.0% |
| ! | TTCTGTCCTATTTGGGTTAT+CGG | - | chr7.4:16013339-16013358 | None:intergenic | 35.0% |
| AACCAAACCAAAAGCAGAGT+CGG | - | chr7.4:16012587-16012606 | None:intergenic | 40.0% | |
| AGGAAAAATTTCAGCCGTGT+TGG | + | chr7.4:16014172-16014191 | MS.gene072382:CDS | 40.0% | |
| ATTAAAGCTCCCGAATACGT+AGG | + | chr7.4:16013453-16013472 | MS.gene072382:intron | 40.0% | |
| ATTTCAATGACCCGTCCAAA+TGG | + | chr7.4:16012191-16012210 | MS.gene072382:intron | 40.0% | |
| ATTTCATCCCTACAACTTCC+AGG | + | chr7.4:16012270-16012289 | MS.gene072382:intron | 40.0% | |
| CGGGATCTTCATGAAAGTTT+GGG | - | chr7.4:16012567-16012586 | None:intergenic | 40.0% | |
| CGGTATCATTCTCGGATATT+GGG | - | chr7.4:16013319-16013338 | None:intergenic | 40.0% | |
| CTCTTGATTGTTTGTCAGGA+AGG | + | chr7.4:16012491-16012510 | MS.gene072382:CDS | 40.0% | |
| GCAAATAAGTTAGAGGATGC+TGG | + | chr7.4:16013943-16013962 | MS.gene072382:CDS | 40.0% | |
| GCGTAGGAGTTTCATGTAAT+AGG | - | chr7.4:16013297-16013316 | None:intergenic | 40.0% | |
| GCTCAATGAACATAGGAAGA+TGG | + | chr7.4:16012973-16012992 | MS.gene072382:intron | 40.0% | |
| GGAAAAATTTCAGCCGTGTT+GGG | + | chr7.4:16014173-16014192 | MS.gene072382:CDS | 40.0% | |
| GGAGGGATAAATGTGACTTA+AGG | - | chr7.4:16012165-16012184 | None:intergenic | 40.0% | |
| GTAGGGACATTTGATTCTGT+TGG | + | chr7.4:16014101-16014120 | MS.gene072382:intron | 40.0% | |
| GTTGCGTACAATACACCAAA+TGG | - | chr7.4:16013497-16013516 | None:intergenic | 40.0% | |
| TAAGTCACATTTATCCCTCC+GGG | + | chr7.4:16012165-16012184 | MS.gene072382:intron | 40.0% | |
| TACAGACAATGATCCTGGTA+TGG | + | chr7.4:16011991-16012010 | MS.gene072382:intron | 40.0% | |
| TAGCATTCTCTCACACTAGT+CGG | - | chr7.4:16012908-16012927 | None:intergenic | 40.0% | |
| TCACAGATTGCACGAAATCA+GGG | - | chr7.4:16012445-16012464 | None:intergenic | 40.0% | |
| TCACATTTGTCCATTTGGAC+GGG | - | chr7.4:16012204-16012223 | None:intergenic | 40.0% | |
| TCGGGATCTTCATGAAAGTT+TGG | - | chr7.4:16012568-16012587 | None:intergenic | 40.0% | |
| TCGGTATCATTCTCGGATAT+TGG | - | chr7.4:16013320-16013339 | None:intergenic | 40.0% | |
| TGCAGCAGCAAATAAGTTAG+AGG | + | chr7.4:16013936-16013955 | MS.gene072382:CDS | 40.0% | |
| TGGGTTATCGGTATCATTCT+CGG | - | chr7.4:16013327-16013346 | None:intergenic | 40.0% | |
| TTAAAGCTCCCGAATACGTA+GGG | + | chr7.4:16013454-16013473 | MS.gene072382:intron | 40.0% | |
| TTCACAGATTGCACGAAATC+AGG | - | chr7.4:16012446-16012465 | None:intergenic | 40.0% | |
| TTGTTTGTCAGGAAGGATTG+AGG | + | chr7.4:16012498-16012517 | MS.gene072382:CDS | 40.0% | |
| ! | ACACGGCTGAAATTTTTCCT+TGG | - | chr7.4:16014172-16014191 | None:intergenic | 40.0% |
| ! | ATAAGTGTCCTTTTGTGAGG+GGG | - | chr7.4:16013614-16013633 | None:intergenic | 40.0% |
| ! | TGTAACAGCTGATGATGCTA+AGG | + | chr7.4:16011862-16011881 | MS.gene072382:CDS | 40.0% |
| !! | ATTTGATTCTGTTGGCTCGA+CGG | + | chr7.4:16014109-16014128 | MS.gene072382:CDS | 40.0% |
| !! | TCTTTGGGATACCATTCACT+AGG | + | chr7.4:16012414-16012433 | MS.gene072382:CDS | 40.0% |
| !!! | GCCCAAGGTGTTTAGTTTTT+GGG | - | chr7.4:16013643-16013662 | None:intergenic | 40.0% |
| AAAGATCCTGAAAGCCTTCG+CGG | + | chr7.4:16013074-16013093 | MS.gene072382:intron | 45.0% | |
| AACCTCCAATCACAACCAGA+GGG | + | chr7.4:16013397-16013416 | MS.gene072382:intron | 45.0% | |
| ACCAAACCAAAAGCAGAGTC+GGG | - | chr7.4:16012586-16012605 | None:intergenic | 45.0% | |
| ACGGGTCATTGAAATTGTCC+CGG | - | chr7.4:16012186-16012205 | None:intergenic | 45.0% | |
| AGTGTGAGAGAATGCTACCA+CGG | + | chr7.4:16012911-16012930 | MS.gene072382:intron | 45.0% | |
| ATCAGCTTCTCTGCTTGATC+AGG | - | chr7.4:16014315-16014334 | None:intergenic | 45.0% | |
| CAGAATGTAGGCAATGGATG+AGG | + | chr7.4:16012836-16012855 | MS.gene072382:intron | 45.0% | |
| CCAGGACCAGGACTAAAATA+TGG | + | chr7.4:16012288-16012307 | MS.gene072382:intron | 45.0% | |
| CTCATCCATTGCCTACATTC+TGG | - | chr7.4:16012838-16012857 | None:intergenic | 45.0% | |
| CTCTGCTTGATCAGGAAAGA+AGG | - | chr7.4:16014307-16014326 | None:intergenic | 45.0% | |
| GATTGCACGAAATCAGGGTT+TGG | - | chr7.4:16012440-16012459 | None:intergenic | 45.0% | |
| GCTGGTATCATTTCTGCAGT+TGG | - | chr7.4:16013186-16013205 | None:intergenic | 45.0% | |
| GGAAGGAGAAATTCCATACC+AGG | - | chr7.4:16012007-16012026 | None:intergenic | 45.0% | |
| GGACTTCAAACTGTGAAACC+AGG | + | chr7.4:16013994-16014013 | MS.gene072382:CDS | 45.0% | |
| GTCATTGAAATTGTCCCGGA+GGG | - | chr7.4:16012182-16012201 | None:intergenic | 45.0% | |
| GTGGAGGTTCTGTCCTATTT+GGG | - | chr7.4:16013346-16013365 | None:intergenic | 45.0% | |
| GTTGTGATTGGAGGTTACCT+CGG | - | chr7.4:16013393-16013412 | None:intergenic | 45.0% | |
| TAACCTCCAATCACAACCAG+AGG | + | chr7.4:16013396-16013415 | MS.gene072382:intron | 45.0% | |
| TATCCTACCACCAAGAAGTC+AGG | - | chr7.4:16013054-16013073 | None:intergenic | 45.0% | |
| TGTGGAGGTTCTGTCCTATT+TGG | - | chr7.4:16013347-16013366 | None:intergenic | 45.0% | |
| TTCATCCCTCTGGTTGTGAT+TGG | - | chr7.4:16013405-16013424 | None:intergenic | 45.0% | |
| ! | CAAGAAGTCAGGTACTGCAT+CGG | - | chr7.4:16013043-16013062 | None:intergenic | 45.0% |
| ! | CATTGAGATACTAGCTTCCC+TGG | - | chr7.4:16011800-16011819 | None:intergenic | 45.0% |
| !!! | CCATATTTTAGTCCTGGTCC+TGG | - | chr7.4:16012291-16012310 | None:intergenic | 45.0% |
| !!! | GGCCCAAGGTGTTTAGTTTT+TGG | - | chr7.4:16013644-16013663 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTATAAATTTGTA+AGG | + | chr7.4:16013775-16013794 | MS.gene072382:intron | 5.0% |
| AACACCTTGGGCCTTGATCT+TGG | + | chr7.4:16013651-16013670 | MS.gene072382:intron | 50.0% | |
| AATACGTAGGGTCCGGAAAG+GGG | + | chr7.4:16013466-16013485 | MS.gene072382:intron | 50.0% | |
| ACAATTGTACCGTTGCGCCA+AGG | + | chr7.4:16013586-16013605 | MS.gene072382:intron | 50.0% | |
| ACAGAACCTCCACAATGACG+AGG | + | chr7.4:16013353-16013372 | MS.gene072382:intron | 50.0% | |
| AGCAGAGAAGCTGATCCAAC+TGG | + | chr7.4:16014320-16014339 | MS.gene072382:CDS | 50.0% | |
| ATCCCTCTGGTTGTGATTGG+AGG | - | chr7.4:16013402-16013421 | None:intergenic | 50.0% | |
| CAAATGGTGAGACCCCTTTC+CGG | - | chr7.4:16013481-16013500 | None:intergenic | 50.0% | |
| CATTCTCGGATATTGGGCGT+AGG | - | chr7.4:16013313-16013332 | None:intergenic | 50.0% | |
| CGATGCAGTACCTGACTTCT+TGG | + | chr7.4:16013041-16013060 | MS.gene072382:intron | 50.0% | |
| CTTTCCGGACCCTACGTATT+CGG | - | chr7.4:16013466-16013485 | None:intergenic | 50.0% | |
| GAATACGTAGGGTCCGGAAA+GGG | + | chr7.4:16013465-16013484 | MS.gene072382:intron | 50.0% | |
| GAATGCTGGCAAAGCTGGTT+TGG | + | chr7.4:16014139-16014158 | MS.gene072382:CDS | 50.0% | |
| GCAGCAGACCTTGACAAAGA+AGG | - | chr7.4:16013919-16013938 | None:intergenic | 50.0% | |
| GGTCATTGAAATTGTCCCGG+AGG | - | chr7.4:16012183-16012202 | None:intergenic | 50.0% | |
| TCAGGGTTTGGCCTAGTGAA+TGG | - | chr7.4:16012428-16012447 | None:intergenic | 50.0% | |
| TCCTGGTCCTGGAAGTTGTA+GGG | - | chr7.4:16012280-16012299 | None:intergenic | 50.0% | |
| TGAGAGAATGCTACCACGGA+GGG | + | chr7.4:16012915-16012934 | MS.gene072382:intron | 50.0% | |
| TGCAGTACCTGACTTCTTGG+TGG | + | chr7.4:16013044-16013063 | MS.gene072382:intron | 50.0% | |
| TTGCAGAATGCTGGCAAAGC+TGG | + | chr7.4:16014134-16014153 | MS.gene072382:CDS | 50.0% | |
| TTTCCGGACCCTACGTATTC+GGG | - | chr7.4:16013465-16013484 | None:intergenic | 50.0% | |
| ! | AGCACGTTGTTTCATCCCTC+TGG | - | chr7.4:16013415-16013434 | None:intergenic | 50.0% |
| ! | GAAGATCCCGACTCTGCTTT+TGG | + | chr7.4:16012577-16012596 | MS.gene072382:intron | 50.0% |
| ! | GTACCTGACTTCTTGGTGGT+AGG | + | chr7.4:16013048-16013067 | MS.gene072382:intron | 50.0% |
| !! | GCTGGTTTGGTGCAAATCCA+AGG | + | chr7.4:16014152-16014171 | MS.gene072382:CDS | 50.0% |
| !! | TCCCGACTCTGCTTTTGGTT+TGG | + | chr7.4:16012582-16012601 | MS.gene072382:intron | 50.0% |
| AAAGCCTTCGCGGTGGATGA+TGG | + | chr7.4:16013084-16013103 | MS.gene072382:intron | 55.0% | |
| AGGACGTGGGAAGTTATCCG+AGG | + | chr7.4:16013373-16013392 | MS.gene072382:intron | 55.0% | |
| ATCTCCATCATCCACCGCGA+AGG | - | chr7.4:16013091-16013110 | None:intergenic | 55.0% | |
| CGAATACGTAGGGTCCGGAA+AGG | + | chr7.4:16013464-16013483 | MS.gene072382:intron | 55.0% | |
| CGGAAAGGGGTCTCACCATT+TGG | + | chr7.4:16013479-16013498 | MS.gene072382:intron | 55.0% | |
| CTCCACAATGACGAGGACGT+GGG | + | chr7.4:16013360-16013379 | MS.gene072382:intron | 55.0% | |
| CTGATCCAACTGGTCCCTTC+AGG | + | chr7.4:16014330-16014349 | MS.gene072382:CDS | 55.0% | |
| GTCCTGGTCCTGGAAGTTGT+AGG | - | chr7.4:16012281-16012300 | None:intergenic | 55.0% | |
| GTGAGAGAATGCTACCACGG+AGG | + | chr7.4:16012914-16012933 | MS.gene072382:intron | 55.0% | |
| TCCCTACAACTTCCAGGACC+AGG | + | chr7.4:16012276-16012295 | MS.gene072382:intron | 55.0% | |
| TCGACGGAGTTGCAGAATGC+TGG | + | chr7.4:16014125-16014144 | MS.gene072382:CDS | 55.0% | |
| TTCCCACGTCCTCGTCATTG+TGG | - | chr7.4:16013365-16013384 | None:intergenic | 55.0% | |
| ATCTTGGCACGTCGCTGGCA+AGG | + | chr7.4:16013667-16013686 | MS.gene072382:intron | 60.0% | |
| CATCCACCGCGAAGGCTTTC+AGG | - | chr7.4:16013083-16013102 | None:intergenic | 60.0% | |
| CCAAGGCTCCCCCTCACAAA+AGG | + | chr7.4:16013603-16013622 | MS.gene072382:intron | 60.0% | |
| CCACGTCCTCGTCATTGTGG+AGG | - | chr7.4:16013362-16013381 | None:intergenic | 60.0% | |
| CCAGCGACGTGCCAAGATCA+AGG | - | chr7.4:16013665-16013684 | None:intergenic | 60.0% | |
| CCTCCACAATGACGAGGACG+TGG | + | chr7.4:16013359-16013378 | MS.gene072382:intron | 60.0% | |
| CCTTGATCTTGGCACGTCGC+TGG | + | chr7.4:16013662-16013681 | MS.gene072382:intron | 60.0% | |
| CGTGCCAAGATCAAGGCCCA+AGG | - | chr7.4:16013658-16013677 | None:intergenic | 60.0% | |
| GATCCTGAAAGCCTTCGCGG+TGG | + | chr7.4:16013077-16013096 | MS.gene072382:intron | 60.0% | |
| GCTACCACGGAGGGCTACTT+TGG | + | chr7.4:16012924-16012943 | MS.gene072382:intron | 60.0% | |
| GCTCCCGAATACGTAGGGTC+CGG | + | chr7.4:16013459-16013478 | MS.gene072382:intron | 60.0% | |
| ! | CCTTTTGTGAGGGGGAGCCT+TGG | - | chr7.4:16013606-16013625 | None:intergenic | 60.0% |
| ! | GGAGGGCTACTTTGGCTGCA+TGG | + | chr7.4:16012932-16012951 | MS.gene072382:intron | 60.0% |
| GCAGCCAAAGTAGCCCTCCG+TGG | - | chr7.4:16012931-16012950 | None:intergenic | 65.0% | |
| GAGGGGGAGCCTTGGCGCAA+CGG | - | chr7.4:16013598-16013617 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 16011794 | 16014356 | 16011794 | ID=MS.gene072382 |
| chr7.4 | mRNA | 16011794 | 16014356 | 16011794 | ID=MS.gene072382.t1;Parent=MS.gene072382 |
| chr7.4 | exon | 16011794 | 16012007 | 16011794 | ID=MS.gene072382.t1.exon1;Parent=MS.gene072382.t1 |
| chr7.4 | CDS | 16011794 | 16012007 | 16011794 | ID=cds.MS.gene072382.t1;Parent=MS.gene072382.t1 |
| chr7.4 | exon | 16012369 | 16012519 | 16012369 | ID=MS.gene072382.t1.exon2;Parent=MS.gene072382.t1 |
| chr7.4 | CDS | 16012369 | 16012519 | 16012369 | ID=cds.MS.gene072382.t1;Parent=MS.gene072382.t1 |
| chr7.4 | exon | 16013930 | 16014015 | 16013930 | ID=MS.gene072382.t1.exon3;Parent=MS.gene072382.t1 |
| chr7.4 | CDS | 16013930 | 16014015 | 16013930 | ID=cds.MS.gene072382.t1;Parent=MS.gene072382.t1 |
| chr7.4 | exon | 16014105 | 16014209 | 16014105 | ID=MS.gene072382.t1.exon4;Parent=MS.gene072382.t1 |
| chr7.4 | CDS | 16014105 | 16014209 | 16014105 | ID=cds.MS.gene072382.t1;Parent=MS.gene072382.t1 |
| chr7.4 | exon | 16014286 | 16014356 | 16014286 | ID=MS.gene072382.t1.exon5;Parent=MS.gene072382.t1 |
| chr7.4 | CDS | 16014286 | 16014356 | 16014286 | ID=cds.MS.gene072382.t1;Parent=MS.gene072382.t1 |
| Gene Sequence |
| Protein sequence |
