Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35966.t1 | XP_003628361.1 | 94.1 | 472 | 26 | 1 | 1 | 470 | 15 | 486 | 2.00E-244 | 854.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35966.t1 | Q9SWI1 | 36.2 | 470 | 183 | 23 | 12 | 443 | 21 | 411 | 1.1e-41 | 172.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35966.t1 | G7LA55 | 94.1 | 472 | 26 | 1 | 1 | 470 | 15 | 486 | 1.4e-244 | 854.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene35966 | 0.802936 | 4.43E-49 | -1.69E-46 |
| MS.gene049217 | MS.gene35966 | 0.804993 | 1.65E-49 | -1.69E-46 |
| MS.gene049356 | MS.gene35966 | 0.840001 | 1.13E-57 | -1.69E-46 |
| MS.gene049369 | MS.gene35966 | 0.843963 | 1.01E-58 | -1.69E-46 |
| MS.gene049396 | MS.gene35966 | 0.800969 | 1.12E-48 | -1.69E-46 |
| MS.gene049427 | MS.gene35966 | 0.811358 | 7.29E-51 | -1.69E-46 |
| MS.gene049609 | MS.gene35966 | 0.813391 | 2.62E-51 | -1.69E-46 |
| MS.gene049805 | MS.gene35966 | 0.841428 | 4.78E-58 | -1.69E-46 |
| MS.gene050593 | MS.gene35966 | 0.820068 | 8.34E-53 | -1.69E-46 |
| MS.gene050670 | MS.gene35966 | 0.800839 | 1.19E-48 | -1.69E-46 |
| MS.gene050686 | MS.gene35966 | 0.828307 | 9.67E-55 | -1.69E-46 |
| MS.gene050772 | MS.gene35966 | 0.837823 | 4.14E-57 | -1.69E-46 |
| MS.gene05105 | MS.gene35966 | 0.818668 | 1.74E-52 | -1.69E-46 |
| MS.gene051387 | MS.gene35966 | 0.821454 | 4.00E-53 | -1.69E-46 |
| MS.gene051666 | MS.gene35966 | 0.808444 | 3.09E-50 | -1.69E-46 |
| MS.gene051692 | MS.gene35966 | 0.867575 | 1.24E-65 | -1.69E-46 |
| MS.gene052346 | MS.gene35966 | 0.813421 | 2.58E-51 | -1.69E-46 |
| MS.gene052414 | MS.gene35966 | 0.826752 | 2.28E-54 | -1.69E-46 |
| MS.gene052421 | MS.gene35966 | 0.823927 | 1.06E-53 | -1.69E-46 |
| MS.gene052481 | MS.gene35966 | 0.810946 | 8.95E-51 | -1.69E-46 |
| MS.gene052484 | MS.gene35966 | 0.825707 | 4.05E-54 | -1.69E-46 |
| MS.gene052485 | MS.gene35966 | 0.829163 | 6.00E-55 | -1.69E-46 |
| MS.gene052501 | MS.gene35966 | 0.80038 | 1.48E-48 | -1.69E-46 |
| MS.gene052615 | MS.gene35966 | 0.82068 | 6.04E-53 | -1.69E-46 |
| MS.gene053213 | MS.gene35966 | 0.815583 | 8.58E-52 | -1.69E-46 |
| MS.gene053286 | MS.gene35966 | 0.807759 | 4.32E-50 | -1.69E-46 |
| MS.gene053436 | MS.gene35966 | 0.801545 | 8.56E-49 | -1.69E-46 |
| MS.gene053449 | MS.gene35966 | 0.854345 | 1.31E-61 | -1.69E-46 |
| MS.gene053574 | MS.gene35966 | 0.815985 | 6.98E-52 | -1.69E-46 |
| MS.gene053632 | MS.gene35966 | 0.80093 | 1.14E-48 | -1.69E-46 |
| MS.gene053758 | MS.gene35966 | 0.828647 | 8.00E-55 | -1.69E-46 |
| MS.gene053813 | MS.gene35966 | 0.855108 | 7.87E-62 | -1.69E-46 |
| MS.gene053912 | MS.gene35966 | 0.812478 | 4.16E-51 | -1.69E-46 |
| MS.gene05505 | MS.gene35966 | 0.838198 | 3.32E-57 | -1.69E-46 |
| MS.gene055206 | MS.gene35966 | 0.820396 | 7.01E-53 | -1.69E-46 |
| MS.gene055486 | MS.gene35966 | 0.80154 | 8.58E-49 | -1.69E-46 |
| MS.gene055647 | MS.gene35966 | 0.803304 | 3.72E-49 | -1.69E-46 |
| MS.gene055722 | MS.gene35966 | 0.822327 | 2.51E-53 | -1.69E-46 |
| MS.gene055802 | MS.gene35966 | 0.802063 | 6.70E-49 | -1.69E-46 |
| MS.gene055909 | MS.gene35966 | 0.847247 | 1.30E-59 | -1.69E-46 |
| MS.gene055911 | MS.gene35966 | 0.847389 | 1.19E-59 | -1.69E-46 |
| MS.gene05592 | MS.gene35966 | 0.805036 | 1.62E-49 | -1.69E-46 |
| MS.gene055941 | MS.gene35966 | 0.825812 | 3.82E-54 | -1.69E-46 |
| MS.gene056166 | MS.gene35966 | 0.803314 | 3.70E-49 | -1.69E-46 |
| MS.gene056374 | MS.gene35966 | 0.813064 | 3.09E-51 | -1.69E-46 |
| MS.gene056422 | MS.gene35966 | 0.811373 | 7.23E-51 | -1.69E-46 |
| MS.gene056487 | MS.gene35966 | 0.83891 | 2.17E-57 | -1.69E-46 |
| MS.gene056511 | MS.gene35966 | 0.861079 | 1.32E-63 | -1.69E-46 |
| MS.gene05664 | MS.gene35966 | 0.835155 | 1.98E-56 | -1.69E-46 |
| MS.gene05666 | MS.gene35966 | 0.841143 | 5.68E-58 | -1.69E-46 |
| MS.gene057076 | MS.gene35966 | 0.827491 | 1.52E-54 | -1.69E-46 |
| MS.gene057086 | MS.gene35966 | 0.823173 | 1.60E-53 | -1.69E-46 |
| MS.gene057124 | MS.gene35966 | 0.801366 | 9.32E-49 | -1.69E-46 |
| MS.gene057331 | MS.gene35966 | 0.804039 | 2.61E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene35966 | 0.82658 | 2.51E-54 | -1.69E-46 |
| MS.gene057734 | MS.gene35966 | 0.838815 | 2.30E-57 | -1.69E-46 |
| MS.gene057749 | MS.gene35966 | 0.831534 | 1.58E-55 | -1.69E-46 |
| MS.gene057823 | MS.gene35966 | 0.836223 | 1.06E-56 | -1.69E-46 |
| MS.gene057856 | MS.gene35966 | 0.86331 | 2.73E-64 | -1.69E-46 |
| MS.gene057926 | MS.gene35966 | 0.833861 | 4.18E-56 | -1.69E-46 |
| MS.gene058007 | MS.gene35966 | 0.806929 | 6.48E-50 | -1.69E-46 |
| MS.gene058019 | MS.gene35966 | 0.826801 | 2.22E-54 | -1.69E-46 |
| MS.gene058376 | MS.gene35966 | 0.801022 | 1.10E-48 | -1.69E-46 |
| MS.gene058790 | MS.gene35966 | 0.823202 | 1.57E-53 | -1.69E-46 |
| MS.gene058928 | MS.gene35966 | 0.826404 | 2.76E-54 | -1.69E-46 |
| MS.gene058948 | MS.gene35966 | 0.800216 | 1.60E-48 | -1.69E-46 |
| MS.gene05934 | MS.gene35966 | 0.823617 | 1.26E-53 | -1.69E-46 |
| MS.gene059366 | MS.gene35966 | 0.803799 | 2.93E-49 | -1.69E-46 |
| MS.gene059367 | MS.gene35966 | 0.809138 | 2.19E-50 | -1.69E-46 |
| MS.gene059368 | MS.gene35966 | 0.828509 | 8.64E-55 | -1.69E-46 |
| MS.gene059455 | MS.gene35966 | 0.86215 | 6.21E-64 | -1.69E-46 |
| MS.gene059674 | MS.gene35966 | 0.852693 | 3.91E-61 | -1.69E-46 |
| MS.gene059688 | MS.gene35966 | 0.803751 | 3.00E-49 | -1.69E-46 |
| MS.gene059711 | MS.gene35966 | 0.807668 | 4.52E-50 | -1.69E-46 |
| MS.gene060193 | MS.gene35966 | 0.811497 | 6.80E-51 | -1.69E-46 |
| MS.gene060403 | MS.gene35966 | 0.824773 | 6.73E-54 | -1.69E-46 |
| MS.gene060804 | MS.gene35966 | 0.841726 | 3.99E-58 | -1.69E-46 |
| MS.gene060818 | MS.gene35966 | 0.826237 | 3.03E-54 | -1.69E-46 |
| MS.gene060835 | MS.gene35966 | 0.844643 | 6.66E-59 | -1.69E-46 |
| MS.gene060837 | MS.gene35966 | 0.849689 | 2.75E-60 | -1.69E-46 |
| MS.gene061041 | MS.gene35966 | 0.804853 | 1.77E-49 | -1.69E-46 |
| MS.gene061200 | MS.gene35966 | 0.806641 | 7.45E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35966.t1 | MTR_8g055860 | 97.458 | 472 | 10 | 1 | 1 | 470 | 15 | 486 | 0.0 | 951 |
| MS.gene35966.t1 | MTR_5g040340 | 47.723 | 505 | 176 | 22 | 3 | 470 | 7 | 460 | 2.80e-109 | 332 |
| MS.gene35966.t1 | MTR_7g088200 | 28.358 | 335 | 194 | 11 | 98 | 407 | 129 | 442 | 1.25e-15 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35966.t1 | AT2G02950 | 37.444 | 446 | 161 | 21 | 34 | 443 | 48 | 411 | 3.46e-51 | 180 |
| MS.gene35966.t1 | AT1G14280 | 33.410 | 434 | 149 | 21 | 61 | 444 | 74 | 417 | 9.07e-37 | 141 |
Find 82 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAAGCTGTTAGAGTTTC+TGG | 0.087161 | 8.2:-41352491 | MS.gene35966:CDS |
| GCAGAAGAAATTGGAGTATT+TGG | 0.123215 | 8.2:-41353520 | MS.gene35966:CDS |
| GGTTTCATTGGTGTCCTTAT+TGG | 0.150675 | 8.2:+41352572 | None:intergenic |
| AGAAAATCACTTGAAGTATT+TGG | 0.207408 | 8.2:-41352932 | MS.gene35966:CDS |
| CACTCTTCAAAAGTGCATTT+TGG | 0.220525 | 8.2:+41353344 | None:intergenic |
| GTTCATTGACCAATGATAAA+AGG | 0.260664 | 8.2:-41352874 | MS.gene35966:CDS |
| AATAACAAAACTTCTAAGTA+TGG | 0.262272 | 8.2:-41353187 | MS.gene35966:CDS |
| CCTTCTTTCATATTCAAGTA+TGG | 0.298687 | 8.2:+41353631 | None:intergenic |
| TTAGCAACCTTTGGTTTCAT+TGG | 0.315040 | 8.2:+41352560 | None:intergenic |
| TGAGTTTCTATGATTGATAA+AGG | 0.315919 | 8.2:+41353564 | None:intergenic |
| TTTCCAGGAGAGACAAATTA+TGG | 0.316379 | 8.2:-41352380 | MS.gene35966:CDS |
| TCTCAAGTGGCAAGGTTTCC+AGG | 0.321527 | 8.2:-41352395 | MS.gene35966:CDS |
| AAACAATGAAAAGAATAGTT+TGG | 0.330151 | 8.2:-41353017 | MS.gene35966:CDS |
| TTCAAAAGCAAGAGAAGTTA+AGG | 0.331945 | 8.2:-41353048 | MS.gene35966:CDS |
| TTGTTTCTCATAAGTTATAA+AGG | 0.342594 | 8.2:+41352463 | None:intergenic |
| TGATAAAGGGATTGATTGTT+TGG | 0.342900 | 8.2:+41353578 | None:intergenic |
| GTGGAAAAGGCAGAAGAAAT+TGG | 0.345679 | 8.2:-41353529 | MS.gene35966:CDS |
| AGTGGAGTGAGAAATTCTAT+AGG | 0.354198 | 8.2:-41353325 | MS.gene35966:CDS |
| TCACTCGGCGCGTAACAATT+CGG | 0.356164 | 8.2:+41352683 | None:intergenic |
| CACTCGGCGCGTAACAATTC+GGG | 0.359288 | 8.2:+41352684 | None:intergenic |
| AGAAAGTACCAAGTTGAGTA+TGG | 0.364459 | 8.2:-41353403 | MS.gene35966:CDS |
| TTATTGATCAATATTGGATT+TGG | 0.374889 | 8.2:+41352905 | None:intergenic |
| TGAAGCATGTGGCGAGTTAG+AGG | 0.378519 | 8.2:+41352307 | None:intergenic |
| GGTGTCTCCTTAGCAACCTT+TGG | 0.382312 | 8.2:+41352551 | None:intergenic |
| CGGCGGCCTGGCATGTTGTT+GGG | 0.387012 | 8.2:-41352524 | MS.gene35966:CDS |
| AGACAAATTATGGTTCAAAA+AGG | 0.388140 | 8.2:-41352370 | MS.gene35966:CDS |
| GCGGCGGCCTGGCATGTTGT+TGG | 0.388150 | 8.2:-41352525 | MS.gene35966:CDS |
| GAGGTATGGCTTCAAAAGTA+AGG | 0.400162 | 8.2:-41352049 | None:intergenic |
| ATGAATTAGTATAGTGCAAA+AGG | 0.407405 | 8.2:-41352076 | MS.gene35966:intron |
| TCTAAGTATGGTGCAGTTCA+AGG | 0.411902 | 8.2:-41353175 | MS.gene35966:CDS |
| GAACCATAATTTGTCTCTCC+TGG | 0.414611 | 8.2:+41352377 | None:intergenic |
| GTGGAGTGAGAAATTCTATA+GGG | 0.424894 | 8.2:-41353324 | MS.gene35966:CDS |
| TTACAATAAGAAGTCCAATA+AGG | 0.434587 | 8.2:-41352586 | MS.gene35966:CDS |
| GAGTTTCTATGATTGATAAA+GGG | 0.437850 | 8.2:+41353565 | None:intergenic |
| ACCTCTTCATCAAGTGGAAA+AGG | 0.438766 | 8.2:-41353542 | MS.gene35966:CDS |
| TTATACCACACCACCATTGC+AGG | 0.447302 | 8.2:-41352330 | MS.gene35966:CDS |
| GAGACACCGAGGCGGCGGCC+TGG | 0.448368 | 8.2:-41352536 | MS.gene35966:CDS |
| AGGTACTTTGTAGAAGGTCT+TGG | 0.451368 | 8.2:+41353460 | None:intergenic |
| TCTAGTAAGAAAATTGTTGT+TGG | 0.460554 | 8.2:+41352739 | None:intergenic |
| AACATGCCAGGCCGCCGCCT+CGG | 0.461235 | 8.2:+41352530 | None:intergenic |
| CAGAAACTCTAACAGCTTTG+TGG | 0.461380 | 8.2:+41352492 | None:intergenic |
| CATTCTATGCTTGCTTCACT+CGG | 0.461709 | 8.2:+41352668 | None:intergenic |
| TCAAAAGCAAGAGAAGTTAA+GGG | 0.473226 | 8.2:-41353047 | MS.gene35966:CDS |
| TTGTTTCCTTTCTCTGAGGA+AGG | 0.475302 | 8.2:+41353440 | None:intergenic |
| AGTAAGAAAATTGTTGTTGG+AGG | 0.489605 | 8.2:+41352742 | None:intergenic |
| TAAAACTGATTTCACTTGCA+TGG | 0.493162 | 8.2:+41353209 | None:intergenic |
| GCGCGTAACAATTCGGGCTA+AGG | 0.501756 | 8.2:+41352690 | None:intergenic |
| GTAAGAAAATTGTTGTTGGA+GGG | 0.511679 | 8.2:+41352743 | None:intergenic |
| AAAGTACCTTCCTCAGAGAA+AGG | 0.512613 | 8.2:-41353446 | MS.gene35966:CDS |
| TTGATCAAGATTTCTGAGCT+AGG | 0.514555 | 8.2:+41353085 | None:intergenic |
| TTTGAGATTGAGAGTCTGAA+AGG | 0.516075 | 8.2:-41352770 | MS.gene35966:CDS |
| TTGCATCCCAACAACATGCC+AGG | 0.520880 | 8.2:+41352518 | None:intergenic |
| GTGCAAAAGGCAAAGAGGTA+TGG | 0.521742 | 8.2:-41352063 | MS.gene35966:CDS |
| TGAGGAAGGTACTTTGTAGA+AGG | 0.524612 | 8.2:+41353454 | None:intergenic |
| CTAAGGAGACACCGAGGCGG+CGG | 0.535226 | 8.2:-41352541 | MS.gene35966:CDS |
| CCATACTTGAATATGAAAGA+AGG | 0.535861 | 8.2:-41353631 | MS.gene35966:CDS |
| CGAGTGAAGCAAGCATAGAA+TGG | 0.535869 | 8.2:-41352667 | MS.gene35966:CDS |
| GTTGACACAGAACTAATACT+TGG | 0.553240 | 8.2:+41353376 | None:intergenic |
| AGAAAACAGCATCATGGAGG+TGG | 0.557647 | 8.2:+41353656 | None:intergenic |
| AAACTCACCTCTTCATCAAG+TGG | 0.559292 | 8.2:-41353548 | MS.gene35966:CDS |
| TTGGAGTTCCATACTCAACT+TGG | 0.566689 | 8.2:+41353395 | None:intergenic |
| AATGAAACCAAAGGTTGCTA+AGG | 0.574882 | 8.2:-41352558 | MS.gene35966:CDS |
| ATGGAGAGAAAACAGCATCA+TGG | 0.576053 | 8.2:+41353650 | None:intergenic |
| AGGTATGGCTTCAAAAGTAA+GGG | 0.578355 | 8.2:-41352048 | None:intergenic |
| AAACAATACTAATTCTCAAG+TGG | 0.581231 | 8.2:-41352408 | MS.gene35966:CDS |
| ATACTAATTCTCAAGTGGCA+AGG | 0.582567 | 8.2:-41352403 | MS.gene35966:CDS |
| TATAGTAACTTTGAAGCATG+TGG | 0.603295 | 8.2:+41352296 | None:intergenic |
| GAGTTAGAGGCCTGCAATGG+TGG | 0.606643 | 8.2:+41352320 | None:intergenic |
| TCCTCAGAGAAAGGAAACAA+TGG | 0.613500 | 8.2:-41353437 | MS.gene35966:CDS |
| AAGCAAGAGAAGTTAAGGGT+GGG | 0.615019 | 8.2:-41353043 | MS.gene35966:CDS |
| AAAAGGCATGGACAACAACA+TGG | 0.618653 | 8.2:-41352353 | MS.gene35966:CDS |
| AAAGCAAGAGAAGTTAAGGG+TGG | 0.625809 | 8.2:-41353044 | MS.gene35966:CDS |
| GCCATTGTTTCCTTTCTCTG+AGG | 0.638901 | 8.2:+41353436 | None:intergenic |
| AGAGGCCTGCAATGGTGGTG+TGG | 0.651196 | 8.2:+41352325 | None:intergenic |
| GTATTAGTTCTGTGTCAACA+TGG | 0.653544 | 8.2:-41353372 | MS.gene35966:CDS |
| AAGGACACCAATGAAACCAA+AGG | 0.654014 | 8.2:-41352567 | MS.gene35966:CDS |
| GTATAGTGCAAAAGGCAAAG+AGG | 0.661197 | 8.2:-41352068 | MS.gene35966:intron |
| GGCGAGTTAGAGGCCTGCAA+TGG | 0.698179 | 8.2:+41352317 | None:intergenic |
| GAGAGAAAACAGCATCATGG+AGG | 0.723218 | 8.2:+41353653 | None:intergenic |
| TTGCTAAGGAGACACCGAGG+CGG | 0.748620 | 8.2:-41352544 | MS.gene35966:CDS |
| AGCAAGCATAGAATGGAGTG+TGG | 0.753377 | 8.2:-41352660 | MS.gene35966:CDS |
| AGGTTGCTAAGGAGACACCG+AGG | 0.821847 | 8.2:-41352547 | MS.gene35966:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAATGAAAAGAATAGTT+TGG | - | chr8.2:41352728-41352747 | MS.gene35966:CDS | 20.0% |
| !! | AATAACAAAACTTCTAAGTA+TGG | - | chr8.2:41352558-41352577 | MS.gene35966:CDS | 20.0% |
| !! | TTATTGATCAATATTGGATT+TGG | + | chr8.2:41352843-41352862 | None:intergenic | 20.0% |
| !!! | AAATATCAACCTTTTATCAT+TGG | + | chr8.2:41352883-41352902 | None:intergenic | 20.0% |
| !!! | AGACTTTTTTTTTGTTGTTT+TGG | - | chr8.2:41353634-41353653 | MS.gene35966:CDS | 20.0% |
| !!! | CTTTTGTTATTGATCAATAT+TGG | + | chr8.2:41352849-41352868 | None:intergenic | 20.0% |
| !!! | TTATCAATTTCTTCCATTTT+TGG | + | chr8.2:41352906-41352925 | None:intergenic | 20.0% |
| !!! | TTGTTTCTCATAAGTTATAA+AGG | + | chr8.2:41353285-41353304 | None:intergenic | 20.0% |
| ! | AAACAATACTAATTCTCAAG+TGG | - | chr8.2:41353337-41353356 | MS.gene35966:CDS | 25.0% |
| ! | AGACAAATTATGGTTCAAAA+AGG | - | chr8.2:41353375-41353394 | MS.gene35966:CDS | 25.0% |
| ! | ATGAATTAGTATAGTGCAAA+AGG | - | chr8.2:41353669-41353688 | MS.gene35966:CDS | 25.0% |
| ! | CAATAGTTTACTATGAAACA+CGG | - | chr8.2:41353479-41353498 | MS.gene35966:CDS | 25.0% |
| ! | GAGTTTCTATGATTGATAAA+GGG | + | chr8.2:41352183-41352202 | None:intergenic | 25.0% |
| ! | GGAAAGTTTATAGCAAAAAT+TGG | - | chr8.2:41352135-41352154 | MS.gene35966:intron | 25.0% |
| ! | TCTAGTAAGAAAATTGTTGT+TGG | + | chr8.2:41353009-41353028 | None:intergenic | 25.0% |
| ! | TGAGTTTCTATGATTGATAA+AGG | + | chr8.2:41352184-41352203 | None:intergenic | 25.0% |
| ! | TTACAATAAGAAGTCCAATA+AGG | - | chr8.2:41353159-41353178 | MS.gene35966:CDS | 25.0% |
| !! | AATACTTCAAGTGATTTTCT+TGG | + | chr8.2:41352813-41352832 | None:intergenic | 25.0% |
| !! | AGAAAATCACTTGAAGTATT+TGG | - | chr8.2:41352813-41352832 | MS.gene35966:CDS | 25.0% |
| !!! | AAGGTTGATATTTCCAAAAA+TGG | - | chr8.2:41352890-41352909 | MS.gene35966:CDS | 25.0% |
| !!! | TTGTTTCTGCTACTAATTTT+TGG | + | chr8.2:41353317-41353336 | None:intergenic | 25.0% |
| AATTATGGTTCAAAAAGGCA+TGG | - | chr8.2:41353380-41353399 | MS.gene35966:CDS | 30.0% | |
| CCATACTTGAATATGAAAGA+AGG | - | chr8.2:41352114-41352133 | MS.gene35966:intron | 30.0% | |
| CCTTCTTTCATATTCAAGTA+TGG | + | chr8.2:41352117-41352136 | None:intergenic | 30.0% | |
| GCTGAAAAATACTTCAATAG+AGG | - | chr8.2:41352249-41352268 | MS.gene35966:intron | 30.0% | |
| GTTCATTGACCAATGATAAA+AGG | - | chr8.2:41352871-41352890 | MS.gene35966:CDS | 30.0% | |
| TCAAAAGCAAGAGAAGTTAA+GGG | - | chr8.2:41352698-41352717 | MS.gene35966:CDS | 30.0% | |
| TGATAAAGGGATTGATTGTT+TGG | + | chr8.2:41352170-41352189 | None:intergenic | 30.0% | |
| TTCAAAAGCAAGAGAAGTTA+AGG | - | chr8.2:41352697-41352716 | MS.gene35966:CDS | 30.0% | |
| ! | AGTAAGAAAATTGTTGTTGG+AGG | + | chr8.2:41353006-41353025 | None:intergenic | 30.0% |
| ! | GATTTTGCATTTGAACAAGA+TGG | + | chr8.2:41352770-41352789 | None:intergenic | 30.0% |
| ! | GTAAGAAAATTGTTGTTGGA+GGG | + | chr8.2:41353005-41353024 | None:intergenic | 30.0% |
| ! | TAAAACTGATTTCACTTGCA+TGG | + | chr8.2:41352539-41352558 | None:intergenic | 30.0% |
| !! | CCAAAAAAAGTGTTCAATCT+TGG | - | chr8.2:41352603-41352622 | MS.gene35966:CDS | 30.0% |
| !! | TATAGTAACTTTGAAGCATG+TGG | + | chr8.2:41353452-41353471 | None:intergenic | 30.0% |
| !!! | CCAAGATTGAACACTTTTTT+TGG | + | chr8.2:41352606-41352625 | None:intergenic | 30.0% |
| AAATGTAACCACATGTGTCT+CGG | + | chr8.2:41353545-41353564 | None:intergenic | 35.0% | |
| AATGAAACCAAAGGTTGCTA+AGG | - | chr8.2:41353187-41353206 | MS.gene35966:CDS | 35.0% | |
| AGTGGAGTGAGAAATTCTAT+AGG | - | chr8.2:41352420-41352439 | MS.gene35966:CDS | 35.0% | |
| ATACTAATTCTCAAGTGGCA+AGG | - | chr8.2:41353342-41353361 | MS.gene35966:CDS | 35.0% | |
| GTGGAGTGAGAAATTCTATA+GGG | - | chr8.2:41352421-41352440 | MS.gene35966:CDS | 35.0% | |
| GTTGACACAGAACTAATACT+TGG | + | chr8.2:41352372-41352391 | None:intergenic | 35.0% | |
| TTGATCAAGATTTCTGAGCT+AGG | + | chr8.2:41352663-41352682 | None:intergenic | 35.0% | |
| TTTCCAGGAGAGACAAATTA+TGG | - | chr8.2:41353365-41353384 | MS.gene35966:CDS | 35.0% | |
| ! | GCAGAAGAAATTGGAGTATT+TGG | - | chr8.2:41352225-41352244 | MS.gene35966:intron | 35.0% |
| ! | GGTGTCTTTTCTTCATCTAA+TGG | + | chr8.2:41352792-41352811 | None:intergenic | 35.0% |
| ! | TTAGCAACCTTTGGTTTCAT+TGG | + | chr8.2:41353188-41353207 | None:intergenic | 35.0% |
| ! | TTTGAGATTGAGAGTCTGAA+AGG | - | chr8.2:41352975-41352994 | MS.gene35966:CDS | 35.0% |
| !! | AGAAAGTACCAAGTTGAGTA+TGG | - | chr8.2:41352342-41352361 | MS.gene35966:CDS | 35.0% |
| !! | CAAAATGCACTTTTGAAGAG+TGG | - | chr8.2:41352402-41352421 | MS.gene35966:CDS | 35.0% |
| !! | CACTCTTCAAAAGTGCATTT+TGG | + | chr8.2:41352404-41352423 | None:intergenic | 35.0% |
| !! | GTATTAGTTCTGTGTCAACA+TGG | - | chr8.2:41352373-41352392 | MS.gene35966:CDS | 35.0% |
| AAACTCACCTCTTCATCAAG+TGG | - | chr8.2:41352197-41352216 | MS.gene35966:intron | 40.0% | |
| AAAGCAAGAGAAGTTAAGGG+TGG | - | chr8.2:41352701-41352720 | MS.gene35966:CDS | 40.0% | |
| AAATGTGTTAGTGTCGTGTC+TGG | - | chr8.2:41353582-41353601 | MS.gene35966:CDS | 40.0% | |
| AAGCAAGAGAAGTTAAGGGT+GGG | - | chr8.2:41352702-41352721 | MS.gene35966:CDS | 40.0% | |
| AAGGACACCAATGAAACCAA+AGG | - | chr8.2:41353178-41353197 | MS.gene35966:CDS | 40.0% | |
| AAGGTGTGACTATTAGTGTC+TGG | - | chr8.2:41353516-41353535 | MS.gene35966:CDS | 40.0% | |
| ACCTCTTCATCAAGTGGAAA+AGG | - | chr8.2:41352203-41352222 | MS.gene35966:intron | 40.0% | |
| ACTATGAAACACGGACACTT+CGG | - | chr8.2:41353488-41353507 | MS.gene35966:CDS | 40.0% | |
| AGGTACTTTGTAGAAGGTCT+TGG | + | chr8.2:41352288-41352307 | None:intergenic | 40.0% | |
| ATGGAGAGAAAACAGCATCA+TGG | + | chr8.2:41352098-41352117 | None:intergenic | 40.0% | |
| CACAAAGCTGTTAGAGTTTC+TGG | - | chr8.2:41353254-41353273 | MS.gene35966:CDS | 40.0% | |
| CAGAAACTCTAACAGCTTTG+TGG | + | chr8.2:41353256-41353275 | None:intergenic | 40.0% | |
| CATTCTATGCTTGCTTCACT+CGG | + | chr8.2:41353080-41353099 | None:intergenic | 40.0% | |
| GTATAGTGCAAAAGGCAAAG+AGG | - | chr8.2:41353677-41353696 | MS.gene35966:CDS | 40.0% | |
| GTGGAAAAGGCAGAAGAAAT+TGG | - | chr8.2:41352216-41352235 | MS.gene35966:intron | 40.0% | |
| TCCTCAGAGAAAGGAAACAA+TGG | - | chr8.2:41352308-41352327 | MS.gene35966:CDS | 40.0% | |
| TCTAAGTATGGTGCAGTTCA+AGG | - | chr8.2:41352570-41352589 | MS.gene35966:CDS | 40.0% | |
| TTGGAGTTCCATACTCAACT+TGG | + | chr8.2:41352353-41352372 | None:intergenic | 40.0% | |
| ! | AAAAGGCATGGACAACAACA+TGG | - | chr8.2:41353392-41353411 | MS.gene35966:CDS | 40.0% |
| ! | AAAGTACCTTCCTCAGAGAA+AGG | - | chr8.2:41352299-41352318 | MS.gene35966:intron | 40.0% |
| ! | GAACCATAATTTGTCTCTCC+TGG | + | chr8.2:41353371-41353390 | None:intergenic | 40.0% |
| ! | GGTTTCATTGGTGTCCTTAT+TGG | + | chr8.2:41353176-41353195 | None:intergenic | 40.0% |
| ! | TTGTTTCCTTTCTCTGAGGA+AGG | + | chr8.2:41352308-41352327 | None:intergenic | 40.0% |
| !! | TGAGGAAGGTACTTTGTAGA+AGG | + | chr8.2:41352294-41352313 | None:intergenic | 40.0% |
| AGAAAACAGCATCATGGAGG+TGG | + | chr8.2:41352092-41352111 | None:intergenic | 45.0% | |
| AGCAAGCATAGAATGGAGTG+TGG | - | chr8.2:41353085-41353104 | MS.gene35966:CDS | 45.0% | |
| CGAGTGAAGCAAGCATAGAA+TGG | - | chr8.2:41353078-41353097 | MS.gene35966:CDS | 45.0% | |
| GAGAGAAAACAGCATCATGG+AGG | + | chr8.2:41352095-41352114 | None:intergenic | 45.0% | |
| GCCATTGTTTCCTTTCTCTG+AGG | + | chr8.2:41352312-41352331 | None:intergenic | 45.0% | |
| GTGCAAAAGGCAAAGAGGTA+TGG | - | chr8.2:41353682-41353701 | MS.gene35966:CDS | 45.0% | |
| TTATACCACACCACCATTGC+AGG | - | chr8.2:41353415-41353434 | MS.gene35966:CDS | 45.0% | |
| ! | GCCTTTTCCACTTGATGAAG+AGG | + | chr8.2:41352207-41352226 | None:intergenic | 45.0% |
| CACGGACACTTCGGATTTGA+AGG | - | chr8.2:41353497-41353516 | MS.gene35966:CDS | 50.0% | |
| GGTGTCTCCTTAGCAACCTT+TGG | + | chr8.2:41353197-41353216 | None:intergenic | 50.0% | |
| TCACTCGGCGCGTAACAATT+CGG | + | chr8.2:41353065-41353084 | None:intergenic | 50.0% | |
| TCTCAAGTGGCAAGGTTTCC+AGG | - | chr8.2:41353350-41353369 | MS.gene35966:CDS | 50.0% | |
| TGAAGCATGTGGCGAGTTAG+AGG | + | chr8.2:41353441-41353460 | None:intergenic | 50.0% | |
| TTGCATCCCAACAACATGCC+AGG | + | chr8.2:41353230-41353249 | None:intergenic | 50.0% | |
| AGGTTGCTAAGGAGACACCG+AGG | - | chr8.2:41353198-41353217 | MS.gene35966:CDS | 55.0% | |
| CACTCGGCGCGTAACAATTC+GGG | + | chr8.2:41353064-41353083 | None:intergenic | 55.0% | |
| GAGTTAGAGGCCTGCAATGG+TGG | + | chr8.2:41353428-41353447 | None:intergenic | 55.0% | |
| GCGCGTAACAATTCGGGCTA+AGG | + | chr8.2:41353058-41353077 | None:intergenic | 55.0% | |
| TCTGGTGTCCGAGACACATG+TGG | - | chr8.2:41353534-41353553 | MS.gene35966:CDS | 55.0% | |
| TTGCTAAGGAGACACCGAGG+CGG | - | chr8.2:41353201-41353220 | MS.gene35966:CDS | 55.0% | |
| GGCGAGTTAGAGGCCTGCAA+TGG | + | chr8.2:41353431-41353450 | None:intergenic | 60.0% | |
| ! | AGAGGCCTGCAATGGTGGTG+TGG | + | chr8.2:41353423-41353442 | None:intergenic | 60.0% |
| CGGCGGCCTGGCATGTTGTT+GGG | - | chr8.2:41353221-41353240 | MS.gene35966:CDS | 65.0% | |
| CTAAGGAGACACCGAGGCGG+CGG | - | chr8.2:41353204-41353223 | MS.gene35966:CDS | 65.0% | |
| AACATGCCAGGCCGCCGCCT+CGG | + | chr8.2:41353218-41353237 | None:intergenic | 70.0% | |
| GCGGCGGCCTGGCATGTTGT+TGG | - | chr8.2:41353220-41353239 | MS.gene35966:CDS | 70.0% | |
| ! | GAGACACCGAGGCGGCGGCC+TGG | - | chr8.2:41353209-41353228 | MS.gene35966:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 41352051 | 41353716 | 41352051 | ID=MS.gene35966 |
| chr8.2 | mRNA | 41352051 | 41353716 | 41352051 | ID=MS.gene35966.t1;Parent=MS.gene35966 |
| chr8.2 | exon | 41352305 | 41353716 | 41352305 | ID=MS.gene35966.t1.exon1;Parent=MS.gene35966.t1 |
| chr8.2 | CDS | 41352305 | 41353716 | 41352305 | ID=cds.MS.gene35966.t1;Parent=MS.gene35966.t1 |
| chr8.2 | exon | 41352051 | 41352084 | 41352051 | ID=MS.gene35966.t1.exon2;Parent=MS.gene35966.t1 |
| chr8.2 | CDS | 41352051 | 41352084 | 41352051 | ID=cds.MS.gene35966.t1;Parent=MS.gene35966.t1 |
| Gene Sequence |
| Protein sequence |
