Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41014.t1 | XP_003590313.1 | 99.4 | 169 | 1 | 0 | 1 | 169 | 1 | 169 | 8.40E-73 | 283.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41014.t1 | Q8RX29 | 69.6 | 92 | 25 | 1 | 74 | 165 | 121 | 209 | 3.9e-34 | 146.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41014.t1 | G7I8H8 | 99.4 | 169 | 1 | 0 | 1 | 169 | 1 | 169 | 6.1e-73 | 283.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene41014 | -0.824663 | 7.14E-54 | -1.69E-46 |
| MS.gene049217 | MS.gene41014 | -0.815931 | 7.18E-52 | -1.69E-46 |
| MS.gene049222 | MS.gene41014 | -0.81105 | 8.50E-51 | -1.69E-46 |
| MS.gene049232 | MS.gene41014 | -0.811362 | 7.27E-51 | -1.69E-46 |
| MS.gene049320 | MS.gene41014 | -0.820786 | 5.71E-53 | -1.69E-46 |
| MS.gene049611 | MS.gene41014 | 0.812252 | 4.66E-51 | -1.69E-46 |
| MS.gene049633 | MS.gene41014 | -0.817852 | 2.66E-52 | -1.69E-46 |
| MS.gene049634 | MS.gene41014 | 0.840142 | 1.04E-57 | -1.69E-46 |
| MS.gene050216 | MS.gene41014 | -0.804325 | 2.28E-49 | -1.69E-46 |
| MS.gene050381 | MS.gene41014 | 0.861954 | 7.13E-64 | -1.69E-46 |
| MS.gene050504 | MS.gene41014 | -0.83954 | 1.49E-57 | -1.69E-46 |
| MS.gene050612 | MS.gene41014 | -0.835083 | 2.06E-56 | -1.69E-46 |
| MS.gene050675 | MS.gene41014 | -0.800524 | 1.38E-48 | -1.69E-46 |
| MS.gene05080 | MS.gene41014 | -0.818539 | 1.86E-52 | -1.69E-46 |
| MS.gene050868 | MS.gene41014 | -0.83846 | 2.84E-57 | -1.69E-46 |
| MS.gene050871 | MS.gene41014 | -0.836333 | 9.95E-57 | -1.69E-46 |
| MS.gene050883 | MS.gene41014 | 0.81583 | 7.56E-52 | -1.69E-46 |
| MS.gene050986 | MS.gene41014 | -0.824333 | 8.54E-54 | -1.69E-46 |
| MS.gene051044 | MS.gene41014 | 0.807792 | 4.25E-50 | -1.69E-46 |
| MS.gene05104 | MS.gene41014 | 0.829303 | 5.55E-55 | -1.69E-46 |
| MS.gene051127 | MS.gene41014 | 0.847298 | 1.26E-59 | -1.69E-46 |
| MS.gene051138 | MS.gene41014 | 0.849138 | 3.92E-60 | -1.69E-46 |
| MS.gene05141 | MS.gene41014 | 0.807025 | 6.18E-50 | -1.69E-46 |
| MS.gene051946 | MS.gene41014 | 0.833884 | 4.13E-56 | -1.69E-46 |
| MS.gene052164 | MS.gene41014 | -0.821698 | 3.52E-53 | -1.69E-46 |
| MS.gene052211 | MS.gene41014 | 0.821472 | 3.96E-53 | -1.69E-46 |
| MS.gene052482 | MS.gene41014 | -0.804423 | 2.18E-49 | -1.69E-46 |
| MS.gene052486 | MS.gene41014 | -0.818833 | 1.59E-52 | -1.69E-46 |
| MS.gene052802 | MS.gene41014 | 0.800421 | 1.45E-48 | -1.69E-46 |
| MS.gene052966 | MS.gene41014 | -0.816893 | 4.37E-52 | -1.69E-46 |
| MS.gene053203 | MS.gene41014 | -0.805896 | 1.07E-49 | -1.69E-46 |
| MS.gene053406 | MS.gene41014 | 0.816401 | 5.64E-52 | -1.69E-46 |
| MS.gene053420 | MS.gene41014 | 0.847486 | 1.12E-59 | -1.69E-46 |
| MS.gene053488 | MS.gene41014 | 0.836319 | 1.00E-56 | -1.69E-46 |
| MS.gene053561 | MS.gene41014 | 0.837713 | 4.42E-57 | -1.69E-46 |
| MS.gene054003 | MS.gene41014 | -0.806018 | 1.01E-49 | -1.69E-46 |
| MS.gene054054 | MS.gene41014 | 0.825476 | 4.59E-54 | -1.69E-46 |
| MS.gene054146 | MS.gene41014 | 0.805232 | 1.47E-49 | -1.69E-46 |
| MS.gene054595 | MS.gene41014 | -0.833148 | 6.30E-56 | -1.69E-46 |
| MS.gene054616 | MS.gene41014 | 0.824648 | 7.20E-54 | -1.69E-46 |
| MS.gene054642 | MS.gene41014 | -0.802271 | 6.07E-49 | -1.69E-46 |
| MS.gene054707 | MS.gene41014 | 0.814726 | 1.33E-51 | -1.69E-46 |
| MS.gene054708 | MS.gene41014 | 0.83534 | 1.78E-56 | -1.69E-46 |
| MS.gene05470 | MS.gene41014 | -0.81262 | 3.87E-51 | -1.69E-46 |
| MS.gene054954 | MS.gene41014 | -0.802447 | 5.59E-49 | -1.69E-46 |
| MS.gene055124 | MS.gene41014 | 0.822714 | 2.04E-53 | -1.69E-46 |
| MS.gene055154 | MS.gene41014 | 0.843533 | 1.32E-58 | -1.69E-46 |
| MS.gene055202 | MS.gene41014 | 0.847223 | 1.32E-59 | -1.69E-46 |
| MS.gene055362 | MS.gene41014 | -0.820205 | 7.76E-53 | -1.69E-46 |
| MS.gene055502 | MS.gene41014 | -0.824523 | 7.71E-54 | -1.69E-46 |
| MS.gene055577 | MS.gene41014 | -0.812656 | 3.80E-51 | -1.69E-46 |
| MS.gene05589 | MS.gene41014 | -0.834876 | 2.33E-56 | -1.69E-46 |
| MS.gene056313 | MS.gene41014 | 0.815154 | 1.07E-51 | -1.69E-46 |
| MS.gene056504 | MS.gene41014 | -0.827624 | 1.41E-54 | -1.69E-46 |
| MS.gene056510 | MS.gene41014 | -0.808559 | 2.92E-50 | -1.69E-46 |
| MS.gene056657 | MS.gene41014 | -0.807622 | 4.62E-50 | -1.69E-46 |
| MS.gene056857 | MS.gene41014 | 0.808998 | 2.35E-50 | -1.69E-46 |
| MS.gene057014 | MS.gene41014 | 0.830491 | 2.85E-55 | -1.69E-46 |
| MS.gene057086 | MS.gene41014 | -0.816624 | 5.02E-52 | -1.69E-46 |
| MS.gene058068 | MS.gene41014 | 0.800602 | 1.33E-48 | -1.69E-46 |
| MS.gene058099 | MS.gene41014 | 0.832475 | 9.25E-56 | -1.69E-46 |
| MS.gene058109 | MS.gene41014 | 0.808632 | 2.82E-50 | -1.69E-46 |
| MS.gene058117 | MS.gene41014 | 0.827686 | 1.36E-54 | -1.69E-46 |
| MS.gene058171 | MS.gene41014 | 0.865232 | 6.86E-65 | -1.69E-46 |
| MS.gene058173 | MS.gene41014 | 0.85641 | 3.28E-62 | -1.69E-46 |
| MS.gene058175 | MS.gene41014 | 0.867349 | 1.46E-65 | -1.69E-46 |
| MS.gene05837 | MS.gene41014 | -0.823855 | 1.11E-53 | -1.69E-46 |
| MS.gene058419 | MS.gene41014 | -0.811399 | 7.14E-51 | -1.69E-46 |
| MS.gene058493 | MS.gene41014 | 0.803439 | 3.49E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene41014 | -0.813412 | 2.59E-51 | -1.69E-46 |
| MS.gene058840 | MS.gene41014 | 0.839309 | 1.71E-57 | -1.69E-46 |
| MS.gene058978 | MS.gene41014 | 0.802844 | 4.63E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene41014 | -0.832043 | 1.18E-55 | -1.69E-46 |
| MS.gene059045 | MS.gene41014 | 0.816056 | 6.73E-52 | -1.69E-46 |
| MS.gene059223 | MS.gene41014 | 0.813571 | 2.39E-51 | -1.69E-46 |
| MS.gene059690 | MS.gene41014 | 0.821533 | 3.84E-53 | -1.69E-46 |
| MS.gene059691 | MS.gene41014 | 0.83135 | 1.76E-55 | -1.69E-46 |
| MS.gene059694 | MS.gene41014 | 0.829214 | 5.83E-55 | -1.69E-46 |
| MS.gene059697 | MS.gene41014 | 0.827625 | 1.41E-54 | -1.69E-46 |
| MS.gene059718 | MS.gene41014 | -0.804991 | 1.66E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene41014 | -0.846105 | 2.68E-59 | -1.69E-46 |
| MS.gene059916 | MS.gene41014 | 0.812381 | 4.36E-51 | -1.69E-46 |
| MS.gene059944 | MS.gene41014 | 0.804072 | 2.57E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene41014 | -0.819176 | 1.33E-52 | -1.69E-46 |
| MS.gene060778 | MS.gene41014 | -0.800896 | 1.16E-48 | -1.69E-46 |
| MS.gene06077 | MS.gene41014 | -0.820577 | 6.37E-53 | -1.69E-46 |
| MS.gene060982 | MS.gene41014 | -0.821973 | 3.04E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41014.t1 | MTR_1g056350 | 99.408 | 169 | 1 | 0 | 1 | 169 | 1 | 169 | 4.56e-124 | 346 |
| MS.gene41014.t1 | MTR_1g090480 | 43.195 | 169 | 93 | 2 | 1 | 168 | 1 | 167 | 5.85e-39 | 130 |
| MS.gene41014.t1 | MTR_8g028465 | 44.720 | 161 | 70 | 4 | 18 | 164 | 20 | 175 | 7.60e-39 | 131 |
| MS.gene41014.t1 | MTR_7g079280 | 41.509 | 159 | 80 | 2 | 18 | 164 | 12 | 169 | 1.34e-34 | 120 |
| MS.gene41014.t1 | MTR_3g012550 | 39.752 | 161 | 78 | 5 | 18 | 164 | 18 | 173 | 3.42e-32 | 113 |
| MS.gene41014.t1 | MTR_1g090460 | 61.176 | 85 | 28 | 2 | 82 | 165 | 73 | 153 | 2.46e-26 | 98.2 |
| MS.gene41014.t1 | MTR_1g090450 | 35.948 | 153 | 81 | 6 | 5 | 151 | 14 | 155 | 3.85e-24 | 92.4 |
| MS.gene41014.t1 | MTR_8g027745 | 35.385 | 130 | 82 | 2 | 32 | 160 | 243 | 371 | 3.78e-20 | 85.9 |
| MS.gene41014.t1 | MTR_7g117350 | 37.255 | 102 | 61 | 1 | 53 | 151 | 269 | 370 | 7.71e-20 | 85.1 |
| MS.gene41014.t1 | MTR_7g117350 | 37.255 | 102 | 61 | 1 | 53 | 151 | 261 | 362 | 9.18e-20 | 85.1 |
| MS.gene41014.t1 | MTR_3g091200 | 34.058 | 138 | 78 | 4 | 18 | 148 | 245 | 376 | 1.30e-19 | 84.7 |
| MS.gene41014.t1 | MTR_8g099515 | 40.602 | 133 | 70 | 5 | 21 | 148 | 254 | 382 | 1.75e-19 | 84.3 |
| MS.gene41014.t1 | MTR_3g099650 | 30.147 | 136 | 88 | 2 | 25 | 160 | 65 | 193 | 2.49e-19 | 84.0 |
| MS.gene41014.t1 | MTR_8g066780 | 33.333 | 141 | 87 | 3 | 23 | 160 | 63 | 199 | 4.94e-19 | 82.8 |
| MS.gene41014.t1 | MTR_1g070140 | 33.077 | 130 | 80 | 2 | 23 | 147 | 47 | 174 | 5.64e-19 | 82.4 |
| MS.gene41014.t1 | MTR_1g082550 | 29.688 | 128 | 90 | 0 | 25 | 152 | 49 | 176 | 6.53e-19 | 82.8 |
| MS.gene41014.t1 | MTR_7g113800 | 39.241 | 79 | 48 | 0 | 74 | 152 | 91 | 169 | 9.08e-19 | 82.0 |
| MS.gene41014.t1 | MTR_7g116180 | 43.836 | 73 | 41 | 0 | 74 | 146 | 67 | 139 | 1.19e-18 | 79.0 |
| MS.gene41014.t1 | MTR_1g070425 | 43.836 | 73 | 41 | 0 | 74 | 146 | 68 | 140 | 2.83e-18 | 77.8 |
| MS.gene41014.t1 | MTR_8g099495 | 35.659 | 129 | 79 | 2 | 36 | 164 | 281 | 405 | 4.22e-18 | 80.5 |
| MS.gene41014.t1 | MTR_5g024730 | 40.000 | 80 | 47 | 1 | 66 | 145 | 69 | 147 | 1.05e-17 | 77.0 |
| MS.gene41014.t1 | MTR_5g064980 | 31.655 | 139 | 76 | 4 | 23 | 152 | 58 | 186 | 1.56e-17 | 79.0 |
| MS.gene41014.t1 | MTR_5g064990 | 38.961 | 77 | 47 | 0 | 74 | 150 | 114 | 190 | 1.78e-17 | 78.6 |
| MS.gene41014.t1 | MTR_5g030010 | 34.328 | 134 | 75 | 3 | 23 | 147 | 63 | 192 | 3.65e-17 | 77.8 |
| MS.gene41014.t1 | MTR_4g030070 | 37.864 | 103 | 53 | 2 | 53 | 155 | 71 | 162 | 5.35e-17 | 75.5 |
| MS.gene41014.t1 | MTR_6g055030 | 40.541 | 74 | 44 | 0 | 74 | 147 | 97 | 170 | 6.77e-17 | 76.6 |
| MS.gene41014.t1 | MTR_5g092790 | 42.466 | 73 | 41 | 1 | 74 | 146 | 157 | 228 | 1.77e-16 | 74.3 |
| MS.gene41014.t1 | MTR_3g078450 | 42.466 | 73 | 41 | 1 | 74 | 146 | 76 | 147 | 2.95e-16 | 73.6 |
| MS.gene41014.t1 | MTR_7g116220 | 38.356 | 73 | 45 | 0 | 74 | 146 | 70 | 142 | 3.76e-16 | 72.4 |
| MS.gene41014.t1 | MTR_7g079290 | 38.043 | 92 | 50 | 2 | 74 | 161 | 125 | 213 | 3.93e-16 | 72.8 |
| MS.gene41014.t1 | MTR_8g093010 | 29.651 | 172 | 92 | 7 | 2 | 161 | 47 | 201 | 5.12e-16 | 72.8 |
| MS.gene41014.t1 | MTR_2g090950 | 33.333 | 99 | 59 | 2 | 61 | 156 | 82 | 176 | 5.13e-16 | 73.2 |
| MS.gene41014.t1 | MTR_1g100737 | 37.179 | 78 | 47 | 1 | 72 | 147 | 90 | 167 | 7.54e-16 | 72.0 |
| MS.gene41014.t1 | MTR_6g087150 | 32.117 | 137 | 77 | 5 | 16 | 145 | 34 | 161 | 9.35e-16 | 73.9 |
| MS.gene41014.t1 | MTR_7g076250 | 33.019 | 106 | 58 | 2 | 65 | 159 | 54 | 157 | 1.10e-15 | 71.2 |
| MS.gene41014.t1 | MTR_3g078470 | 32.773 | 119 | 77 | 3 | 28 | 146 | 32 | 147 | 1.64e-15 | 71.2 |
| MS.gene41014.t1 | MTR_5g009200 | 45.679 | 81 | 41 | 2 | 69 | 148 | 317 | 395 | 1.66e-15 | 73.2 |
| MS.gene41014.t1 | MTR_5g026730 | 27.485 | 171 | 102 | 4 | 9 | 164 | 3 | 166 | 1.74e-15 | 70.5 |
| MS.gene41014.t1 | MTR_4g129420 | 30.328 | 122 | 77 | 2 | 29 | 147 | 72 | 188 | 1.89e-15 | 73.2 |
| MS.gene41014.t1 | MTR_7g096690 | 31.655 | 139 | 87 | 3 | 17 | 147 | 6 | 144 | 2.33e-15 | 72.4 |
| MS.gene41014.t1 | MTR_3g091620 | 42.857 | 77 | 39 | 2 | 71 | 146 | 98 | 170 | 3.72e-15 | 72.0 |
| MS.gene41014.t1 | MTR_1g074190 | 37.864 | 103 | 53 | 4 | 50 | 147 | 79 | 175 | 4.32e-15 | 71.6 |
| MS.gene41014.t1 | MTR_5g092750 | 40.789 | 76 | 44 | 1 | 74 | 149 | 157 | 231 | 4.66e-15 | 70.5 |
| MS.gene41014.t1 | MTR_2g096350 | 54.545 | 44 | 20 | 0 | 103 | 146 | 135 | 178 | 5.74e-15 | 70.1 |
| MS.gene41014.t1 | MTR_5g009210 | 44.156 | 77 | 40 | 2 | 73 | 148 | 286 | 360 | 6.66e-15 | 71.2 |
| MS.gene41014.t1 | MTR_8g092960 | 30.719 | 153 | 91 | 7 | 2 | 151 | 38 | 178 | 7.48e-15 | 69.7 |
| MS.gene41014.t1 | MTR_3g086700 | 35.526 | 76 | 49 | 0 | 75 | 150 | 47 | 122 | 8.50e-15 | 68.9 |
| MS.gene41014.t1 | MTR_5g026720 | 33.333 | 126 | 57 | 5 | 37 | 152 | 34 | 142 | 1.17e-14 | 67.8 |
| MS.gene41014.t1 | MTR_5g076990 | 45.946 | 74 | 39 | 1 | 74 | 146 | 76 | 149 | 1.36e-14 | 70.1 |
| MS.gene41014.t1 | MTR_3g086730 | 35.526 | 76 | 49 | 0 | 75 | 150 | 47 | 122 | 1.50e-14 | 68.9 |
| MS.gene41014.t1 | MTR_8g009190 | 41.096 | 73 | 43 | 0 | 79 | 151 | 81 | 153 | 1.59e-14 | 70.1 |
| MS.gene41014.t1 | MTR_1g492830 | 29.771 | 131 | 75 | 5 | 23 | 147 | 13 | 132 | 1.67e-14 | 68.9 |
| MS.gene41014.t1 | MTR_5g009190 | 44.156 | 77 | 40 | 2 | 73 | 148 | 265 | 339 | 1.95e-14 | 70.1 |
| MS.gene41014.t1 | MTR_2g090905 | 35.443 | 79 | 48 | 1 | 75 | 150 | 40 | 118 | 2.68e-14 | 66.2 |
| MS.gene41014.t1 | MTR_3g110190 | 30.952 | 126 | 78 | 4 | 23 | 145 | 15 | 134 | 3.13e-14 | 69.3 |
| MS.gene41014.t1 | MTR_3g094000 | 34.021 | 97 | 63 | 1 | 65 | 161 | 82 | 177 | 3.52e-14 | 67.0 |
| MS.gene41014.t1 | MTR_7g117540 | 31.159 | 138 | 87 | 3 | 15 | 151 | 19 | 149 | 4.42e-14 | 68.6 |
| MS.gene41014.t1 | MTR_8g092985 | 27.485 | 171 | 103 | 6 | 2 | 161 | 46 | 206 | 7.18e-14 | 67.0 |
| MS.gene41014.t1 | MTR_8g063660 | 36.634 | 101 | 49 | 3 | 49 | 147 | 51 | 138 | 7.22e-14 | 68.2 |
| MS.gene41014.t1 | MTR_3g116000 | 38.889 | 72 | 40 | 1 | 74 | 145 | 79 | 146 | 8.70e-14 | 66.2 |
| MS.gene41014.t1 | MTR_8g092970 | 31.928 | 166 | 92 | 8 | 2 | 164 | 45 | 192 | 9.24e-14 | 66.6 |
| MS.gene41014.t1 | MTR_5g066250 | 32.584 | 89 | 57 | 1 | 68 | 156 | 128 | 213 | 9.97e-14 | 68.2 |
| MS.gene41014.t1 | MTR_1g090440 | 29.936 | 157 | 85 | 5 | 14 | 147 | 6 | 160 | 1.11e-13 | 65.5 |
| MS.gene41014.t1 | MTR_8g073120 | 33.333 | 81 | 53 | 1 | 66 | 146 | 62 | 141 | 1.21e-13 | 66.2 |
| MS.gene41014.t1 | MTR_3g095560 | 30.189 | 159 | 89 | 7 | 1 | 151 | 40 | 184 | 1.23e-13 | 66.6 |
| MS.gene41014.t1 | MTR_4g093830 | 45.614 | 57 | 31 | 0 | 103 | 159 | 152 | 208 | 1.48e-13 | 67.4 |
| MS.gene41014.t1 | MTR_8g092840 | 28.571 | 154 | 98 | 6 | 2 | 151 | 43 | 188 | 1.49e-13 | 66.2 |
| MS.gene41014.t1 | MTR_8g066740 | 41.892 | 74 | 42 | 1 | 74 | 146 | 76 | 149 | 1.87e-13 | 67.0 |
| MS.gene41014.t1 | MTR_3g100400 | 36.111 | 72 | 43 | 1 | 74 | 145 | 130 | 198 | 2.28e-13 | 67.0 |
| MS.gene41014.t1 | MTR_8g092930 | 32.609 | 92 | 58 | 2 | 74 | 164 | 112 | 200 | 2.44e-13 | 65.9 |
| MS.gene41014.t1 | MTR_5g082940 | 39.189 | 74 | 44 | 1 | 74 | 147 | 75 | 147 | 2.83e-13 | 64.7 |
| MS.gene41014.t1 | MTR_5g034790 | 37.209 | 86 | 47 | 2 | 64 | 147 | 106 | 186 | 3.05e-13 | 66.6 |
| MS.gene41014.t1 | MTR_7g073200 | 40.541 | 74 | 41 | 1 | 74 | 147 | 81 | 151 | 3.10e-13 | 64.7 |
| MS.gene41014.t1 | MTR_5g064890 | 35.238 | 105 | 62 | 2 | 45 | 146 | 96 | 197 | 4.73e-13 | 66.2 |
| MS.gene41014.t1 | MTR_8g032690 | 44.444 | 63 | 32 | 2 | 83 | 145 | 2 | 61 | 5.16e-13 | 62.4 |
| MS.gene41014.t1 | MTR_4g063070 | 35.556 | 90 | 49 | 2 | 70 | 155 | 304 | 388 | 5.22e-13 | 66.2 |
| MS.gene41014.t1 | MTR_4g056590 | 40.000 | 75 | 39 | 1 | 71 | 145 | 97 | 165 | 6.44e-13 | 63.9 |
| MS.gene41014.t1 | MTR_3g464780 | 40.260 | 77 | 45 | 1 | 74 | 149 | 102 | 178 | 6.71e-13 | 65.1 |
| MS.gene41014.t1 | MTR_2g436100 | 36.986 | 73 | 43 | 1 | 74 | 146 | 93 | 162 | 8.10e-13 | 65.1 |
| MS.gene41014.t1 | MTR_2g009310 | 46.154 | 52 | 28 | 0 | 101 | 152 | 159 | 210 | 8.51e-13 | 65.5 |
| MS.gene41014.t1 | MTR_8g089880 | 45.000 | 60 | 28 | 1 | 101 | 160 | 151 | 205 | 8.53e-13 | 64.7 |
| MS.gene41014.t1 | MTR_2g055790 | 36.364 | 77 | 43 | 1 | 74 | 150 | 77 | 147 | 8.82e-13 | 63.5 |
| MS.gene41014.t1 | MTR_2g044570 | 36.232 | 69 | 44 | 0 | 84 | 152 | 64 | 132 | 8.92e-13 | 65.1 |
| MS.gene41014.t1 | MTR_7g116200 | 38.356 | 73 | 41 | 1 | 74 | 146 | 68 | 136 | 1.08e-12 | 63.2 |
| MS.gene41014.t1 | MTR_5g022920 | 38.889 | 72 | 43 | 1 | 74 | 145 | 161 | 231 | 1.23e-12 | 63.9 |
| MS.gene41014.t1 | MTR_3g078120 | 32.061 | 131 | 75 | 5 | 23 | 146 | 5 | 128 | 2.12e-12 | 61.6 |
| MS.gene41014.t1 | MTR_8g071815 | 43.137 | 51 | 29 | 0 | 103 | 153 | 90 | 140 | 2.20e-12 | 62.4 |
| MS.gene41014.t1 | MTR_3g081030 | 44.118 | 68 | 34 | 2 | 84 | 151 | 104 | 167 | 2.89e-12 | 62.8 |
| MS.gene41014.t1 | MTR_4g116460 | 36.620 | 71 | 43 | 2 | 77 | 146 | 415 | 484 | 3.57e-12 | 63.9 |
| MS.gene41014.t1 | MTR_6g055030 | 44.444 | 54 | 30 | 0 | 94 | 147 | 86 | 139 | 3.59e-12 | 63.2 |
| MS.gene41014.t1 | MTR_3g071300 | 38.961 | 77 | 42 | 2 | 74 | 147 | 76 | 150 | 3.79e-12 | 61.6 |
| MS.gene41014.t1 | MTR_4g108830 | 28.058 | 139 | 86 | 4 | 17 | 145 | 54 | 188 | 4.00e-12 | 62.0 |
| MS.gene41014.t1 | MTR_1g043410 | 34.722 | 72 | 47 | 0 | 74 | 145 | 94 | 165 | 4.67e-12 | 63.2 |
| MS.gene41014.t1 | MTR_6g007737 | 31.579 | 133 | 76 | 6 | 23 | 145 | 74 | 201 | 4.71e-12 | 63.2 |
| MS.gene41014.t1 | MTR_8g092990 | 39.024 | 82 | 46 | 2 | 83 | 163 | 123 | 201 | 5.63e-12 | 62.0 |
| MS.gene41014.t1 | MTR_4g120270 | 32.184 | 87 | 54 | 1 | 74 | 160 | 80 | 161 | 8.44e-12 | 62.0 |
| MS.gene41014.t1 | MTR_5g026260 | 43.478 | 69 | 35 | 3 | 78 | 145 | 482 | 547 | 8.51e-12 | 62.8 |
| MS.gene41014.t1 | MTR_4g108830 | 30.973 | 113 | 70 | 2 | 33 | 145 | 112 | 216 | 9.39e-12 | 61.2 |
| MS.gene41014.t1 | MTR_3g078520 | 40.541 | 74 | 42 | 1 | 74 | 147 | 76 | 147 | 9.75e-12 | 60.5 |
| MS.gene41014.t1 | MTR_8g072020 | 44.776 | 67 | 33 | 3 | 80 | 145 | 385 | 448 | 9.82e-12 | 62.4 |
| MS.gene41014.t1 | MTR_7g116210 | 46.939 | 49 | 26 | 0 | 98 | 146 | 30 | 78 | 1.01e-11 | 58.9 |
| MS.gene41014.t1 | MTR_8g072020 | 44.776 | 67 | 33 | 3 | 80 | 145 | 424 | 487 | 1.02e-11 | 62.4 |
| MS.gene41014.t1 | MTR_8g074900 | 32.283 | 127 | 74 | 5 | 26 | 145 | 101 | 222 | 1.06e-11 | 61.2 |
| MS.gene41014.t1 | MTR_2g035800 | 37.500 | 72 | 42 | 1 | 74 | 145 | 76 | 144 | 1.87e-11 | 59.3 |
| MS.gene41014.t1 | MTR_3g114500 | 32.039 | 103 | 59 | 2 | 53 | 155 | 32 | 123 | 6.54e-11 | 57.4 |
| MS.gene41014.t1 | MTR_4g116460 | 36.111 | 72 | 44 | 2 | 77 | 147 | 458 | 528 | 6.69e-11 | 60.1 |
| MS.gene41014.t1 | MTR_3g078540 | 36.047 | 86 | 51 | 2 | 64 | 147 | 40 | 123 | 8.53e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41014.t1 | AT2G35910 | 61.728 | 162 | 57 | 2 | 6 | 165 | 51 | 209 | 7.46e-59 | 182 |
| MS.gene41014.t1 | AT5G06490 | 48.045 | 179 | 65 | 4 | 13 | 166 | 17 | 192 | 2.26e-53 | 168 |
| MS.gene41014.t1 | AT5G07040 | 39.456 | 147 | 86 | 2 | 18 | 164 | 12 | 155 | 3.98e-33 | 115 |
| MS.gene41014.t1 | AT3G61550 | 36.649 | 191 | 77 | 6 | 18 | 169 | 25 | 210 | 3.32e-31 | 112 |
| MS.gene41014.t1 | AT2G46160 | 41.243 | 177 | 67 | 6 | 18 | 164 | 34 | 203 | 1.12e-30 | 110 |
| MS.gene41014.t1 | AT2G46160 | 41.243 | 177 | 67 | 6 | 18 | 164 | 34 | 203 | 1.12e-30 | 110 |
| MS.gene41014.t1 | AT5G27420 | 44.318 | 88 | 46 | 1 | 74 | 161 | 95 | 179 | 5.08e-20 | 85.9 |
| MS.gene41014.t1 | AT2G25410 | 40.698 | 86 | 51 | 0 | 65 | 150 | 289 | 374 | 1.79e-19 | 84.3 |
| MS.gene41014.t1 | AT5G53110 | 35.766 | 137 | 72 | 5 | 21 | 148 | 246 | 375 | 3.43e-19 | 83.6 |
| MS.gene41014.t1 | AT2G46495 | 42.045 | 88 | 51 | 0 | 64 | 151 | 253 | 340 | 1.16e-18 | 81.6 |
| MS.gene41014.t1 | AT2G46495 | 42.045 | 88 | 51 | 0 | 64 | 151 | 281 | 368 | 1.47e-18 | 81.6 |
| MS.gene41014.t1 | AT2G46494 | 31.333 | 150 | 97 | 3 | 2 | 147 | 213 | 360 | 1.85e-18 | 81.3 |
| MS.gene41014.t1 | AT2G46493 | 30.469 | 128 | 83 | 3 | 25 | 147 | 56 | 182 | 2.09e-18 | 78.6 |
| MS.gene41014.t1 | AT1G72200 | 38.202 | 89 | 55 | 0 | 74 | 162 | 115 | 203 | 2.22e-18 | 81.3 |
| MS.gene41014.t1 | AT2G35000 | 32.258 | 124 | 75 | 2 | 29 | 146 | 58 | 178 | 9.10e-18 | 79.7 |
| MS.gene41014.t1 | AT4G10160 | 40.476 | 84 | 46 | 1 | 69 | 152 | 67 | 146 | 1.04e-17 | 77.4 |
| MS.gene41014.t1 | AT3G05200 | 40.541 | 74 | 44 | 0 | 74 | 147 | 99 | 172 | 1.25e-17 | 79.3 |
| MS.gene41014.t1 | AT4G40070 | 40.206 | 97 | 55 | 2 | 74 | 168 | 95 | 190 | 1.29e-17 | 78.6 |
| MS.gene41014.t1 | AT4G10150 | 41.667 | 96 | 49 | 3 | 69 | 161 | 81 | 172 | 1.97e-17 | 77.0 |
| MS.gene41014.t1 | AT2G34990 | 41.096 | 73 | 43 | 0 | 74 | 146 | 67 | 139 | 4.28e-17 | 77.0 |
| MS.gene41014.t1 | AT2G34990 | 41.096 | 73 | 43 | 0 | 74 | 146 | 89 | 161 | 4.40e-17 | 77.0 |
| MS.gene41014.t1 | AT1G28040 | 37.000 | 100 | 55 | 3 | 53 | 147 | 201 | 297 | 5.64e-17 | 76.6 |
| MS.gene41014.t1 | AT1G22500 | 36.264 | 91 | 58 | 0 | 74 | 164 | 89 | 179 | 6.11e-17 | 77.4 |
| MS.gene41014.t1 | AT4G09130 | 40.000 | 80 | 48 | 0 | 68 | 147 | 85 | 164 | 6.45e-17 | 77.0 |
| MS.gene41014.t1 | AT5G17600 | 33.562 | 146 | 79 | 5 | 23 | 160 | 62 | 197 | 6.70e-17 | 77.0 |
| MS.gene41014.t1 | AT3G18930 | 38.835 | 103 | 55 | 3 | 73 | 167 | 119 | 221 | 8.56e-17 | 77.0 |
| MS.gene41014.t1 | AT3G18930 | 38.835 | 103 | 55 | 3 | 73 | 167 | 119 | 221 | 8.56e-17 | 77.0 |
| MS.gene41014.t1 | AT3G18930 | 38.835 | 103 | 55 | 3 | 73 | 167 | 119 | 221 | 8.56e-17 | 77.0 |
| MS.gene41014.t1 | AT4G09120 | 41.772 | 79 | 46 | 0 | 68 | 146 | 88 | 166 | 9.09e-17 | 76.6 |
| MS.gene41014.t1 | AT1G35330 | 40.741 | 81 | 48 | 0 | 74 | 154 | 100 | 180 | 1.97e-16 | 75.5 |
| MS.gene41014.t1 | AT1G33480 | 39.759 | 83 | 46 | 1 | 69 | 151 | 70 | 148 | 4.05e-16 | 73.9 |
| MS.gene41014.t1 | AT1G23980 | 31.973 | 147 | 82 | 5 | 12 | 145 | 45 | 186 | 6.68e-16 | 74.3 |
| MS.gene41014.t1 | AT4G09110 | 40.000 | 80 | 48 | 0 | 68 | 147 | 88 | 167 | 1.82e-15 | 72.4 |
| MS.gene41014.t1 | AT4G09100 | 35.065 | 77 | 50 | 0 | 74 | 150 | 56 | 132 | 2.66e-15 | 68.9 |
| MS.gene41014.t1 | AT4G28890 | 41.667 | 72 | 39 | 1 | 74 | 145 | 97 | 165 | 4.48e-15 | 72.0 |
| MS.gene41014.t1 | AT3G48030 | 35.036 | 137 | 75 | 5 | 16 | 147 | 46 | 173 | 5.75e-15 | 70.9 |
| MS.gene41014.t1 | AT1G04360 | 30.986 | 142 | 87 | 3 | 17 | 147 | 37 | 178 | 6.17e-15 | 71.6 |
| MS.gene41014.t1 | AT3G48030 | 33.871 | 124 | 75 | 3 | 29 | 147 | 130 | 251 | 9.16e-15 | 70.9 |
| MS.gene41014.t1 | AT4G17905 | 30.000 | 160 | 91 | 4 | 23 | 167 | 66 | 219 | 9.43e-15 | 70.5 |
| MS.gene41014.t1 | AT2G20030 | 41.667 | 72 | 39 | 1 | 74 | 145 | 98 | 166 | 1.03e-14 | 70.9 |
| MS.gene41014.t1 | AT4G17905 | 30.000 | 160 | 91 | 4 | 23 | 167 | 92 | 245 | 1.18e-14 | 70.5 |
| MS.gene41014.t1 | AT5G36001 | 47.541 | 61 | 32 | 0 | 101 | 161 | 262 | 322 | 4.10e-14 | 68.9 |
| MS.gene41014.t1 | AT5G66070 | 41.667 | 72 | 37 | 1 | 74 | 145 | 152 | 218 | 4.36e-14 | 67.8 |
| MS.gene41014.t1 | AT5G66070 | 41.667 | 72 | 37 | 1 | 74 | 145 | 152 | 218 | 4.36e-14 | 67.8 |
| MS.gene41014.t1 | AT5G66070 | 32.692 | 104 | 61 | 2 | 42 | 145 | 148 | 242 | 5.05e-14 | 67.8 |
| MS.gene41014.t1 | AT3G10910 | 36.471 | 85 | 48 | 2 | 74 | 155 | 88 | 169 | 5.20e-14 | 66.6 |
| MS.gene41014.t1 | AT1G32361 | 33.333 | 114 | 64 | 3 | 55 | 161 | 111 | 219 | 5.65e-14 | 68.6 |
| MS.gene41014.t1 | AT2G42350 | 34.375 | 96 | 52 | 2 | 74 | 162 | 75 | 166 | 6.54e-14 | 67.0 |
| MS.gene41014.t1 | AT5G01880 | 37.349 | 83 | 45 | 2 | 74 | 154 | 79 | 156 | 1.13e-13 | 65.5 |
| MS.gene41014.t1 | AT5G05280 | 35.849 | 106 | 51 | 3 | 43 | 147 | 68 | 157 | 1.29e-13 | 65.5 |
| MS.gene41014.t1 | AT5G43420 | 31.193 | 109 | 54 | 3 | 53 | 146 | 79 | 181 | 1.73e-13 | 67.4 |
| MS.gene41014.t1 | AT2G37580 | 56.818 | 44 | 19 | 0 | 103 | 146 | 142 | 185 | 2.49e-13 | 65.9 |
| MS.gene41014.t1 | AT3G03550 | 29.530 | 149 | 70 | 4 | 23 | 146 | 64 | 202 | 2.83e-13 | 66.6 |
| MS.gene41014.t1 | AT5G05810 | 33.750 | 80 | 50 | 1 | 74 | 153 | 120 | 196 | 3.03e-13 | 67.0 |
| MS.gene41014.t1 | AT2G17730 | 38.889 | 72 | 44 | 0 | 74 | 145 | 167 | 238 | 3.70e-13 | 65.5 |
| MS.gene41014.t1 | AT4G38140 | 47.541 | 61 | 30 | 2 | 94 | 152 | 53 | 113 | 3.71e-13 | 63.5 |
| MS.gene41014.t1 | AT1G20823 | 32.692 | 104 | 49 | 3 | 44 | 145 | 69 | 153 | 4.02e-13 | 64.7 |
| MS.gene41014.t1 | AT4G33565 | 55.102 | 49 | 21 | 1 | 101 | 149 | 215 | 262 | 5.23e-13 | 65.9 |
| MS.gene41014.t1 | AT2G27940 | 32.895 | 76 | 47 | 1 | 74 | 149 | 115 | 186 | 6.05e-13 | 64.7 |
| MS.gene41014.t1 | AT4G17920 | 35.802 | 81 | 52 | 0 | 65 | 145 | 72 | 152 | 6.28e-13 | 65.5 |
| MS.gene41014.t1 | AT2G42360 | 27.536 | 138 | 92 | 2 | 28 | 165 | 41 | 170 | 6.49e-13 | 64.7 |
| MS.gene41014.t1 | AT2G18650 | 34.483 | 87 | 49 | 2 | 64 | 147 | 89 | 170 | 9.01e-13 | 65.5 |
| MS.gene41014.t1 | AT3G62690 | 35.165 | 91 | 53 | 2 | 75 | 165 | 88 | 172 | 1.02e-12 | 64.3 |
| MS.gene41014.t1 | AT1G76410 | 31.405 | 121 | 76 | 2 | 30 | 145 | 28 | 146 | 1.17e-12 | 63.2 |
| MS.gene41014.t1 | AT5G37250 | 49.180 | 61 | 29 | 1 | 97 | 155 | 147 | 207 | 1.37e-12 | 63.5 |
| MS.gene41014.t1 | AT5G37250 | 49.180 | 61 | 29 | 1 | 97 | 155 | 131 | 191 | 1.47e-12 | 63.2 |
| MS.gene41014.t1 | AT1G49220 | 36.709 | 79 | 46 | 2 | 74 | 151 | 108 | 183 | 1.61e-12 | 63.9 |
| MS.gene41014.t1 | AT4G15975 | 34.444 | 90 | 53 | 2 | 74 | 161 | 51 | 136 | 2.21e-12 | 63.2 |
| MS.gene41014.t1 | AT2G03000 | 55.814 | 43 | 18 | 1 | 103 | 145 | 481 | 522 | 3.76e-12 | 63.9 |
| MS.gene41014.t1 | AT1G49230 | 37.975 | 79 | 45 | 2 | 74 | 151 | 104 | 179 | 4.14e-12 | 62.4 |
| MS.gene41014.t1 | AT5G37230 | 46.875 | 64 | 32 | 1 | 94 | 155 | 144 | 207 | 4.27e-12 | 62.0 |
| MS.gene41014.t1 | AT1G72220 | 25.161 | 155 | 97 | 3 | 27 | 162 | 86 | 240 | 4.44e-12 | 63.5 |
| MS.gene41014.t1 | AT5G58580 | 39.759 | 83 | 47 | 2 | 72 | 154 | 109 | 188 | 4.47e-12 | 63.2 |
| MS.gene41014.t1 | AT3G16720 | 35.616 | 73 | 43 | 1 | 74 | 146 | 94 | 162 | 4.93e-12 | 63.2 |
| MS.gene41014.t1 | AT1G49200 | 35.443 | 79 | 47 | 2 | 74 | 151 | 109 | 184 | 5.03e-12 | 62.0 |
| MS.gene41014.t1 | AT5G57750 | 35.135 | 74 | 46 | 1 | 72 | 145 | 93 | 164 | 6.14e-12 | 61.6 |
| MS.gene41014.t1 | AT4G30400 | 40.000 | 75 | 41 | 2 | 72 | 145 | 105 | 176 | 6.85e-12 | 63.2 |
| MS.gene41014.t1 | AT2G47560 | 34.524 | 84 | 53 | 2 | 72 | 155 | 78 | 159 | 7.12e-12 | 61.6 |
| MS.gene41014.t1 | AT5G10380 | 50.000 | 46 | 23 | 0 | 101 | 146 | 133 | 178 | 7.34e-12 | 62.4 |
| MS.gene41014.t1 | AT4G26400 | 54.167 | 48 | 21 | 1 | 98 | 145 | 236 | 282 | 7.69e-12 | 62.8 |
| MS.gene41014.t1 | AT4G26400 | 54.167 | 48 | 21 | 1 | 98 | 145 | 236 | 282 | 7.69e-12 | 62.8 |
| MS.gene41014.t1 | AT2G35420 | 36.111 | 72 | 43 | 1 | 74 | 145 | 77 | 145 | 7.80e-12 | 62.0 |
| MS.gene41014.t1 | AT3G18773 | 35.632 | 87 | 52 | 2 | 66 | 151 | 95 | 178 | 8.12e-12 | 61.6 |
| MS.gene41014.t1 | AT5G46650 | 36.585 | 82 | 51 | 1 | 65 | 145 | 76 | 157 | 8.96e-12 | 62.0 |
| MS.gene41014.t1 | AT5G37270 | 48.333 | 60 | 29 | 1 | 97 | 154 | 147 | 206 | 1.01e-11 | 61.2 |
| MS.gene41014.t1 | AT1G72310 | 40.984 | 61 | 35 | 1 | 103 | 162 | 127 | 187 | 1.02e-11 | 62.4 |
| MS.gene41014.t1 | AT5G40250 | 34.694 | 98 | 53 | 2 | 59 | 145 | 88 | 185 | 1.04e-11 | 62.4 |
| MS.gene41014.t1 | AT4G35840 | 37.500 | 72 | 45 | 0 | 74 | 145 | 162 | 233 | 1.25e-11 | 61.2 |
| MS.gene41014.t1 | AT1G35630 | 30.719 | 153 | 88 | 5 | 16 | 163 | 154 | 293 | 1.32e-11 | 62.0 |
| MS.gene41014.t1 | AT1G49210 | 35.443 | 79 | 47 | 2 | 74 | 151 | 108 | 183 | 2.93e-11 | 60.1 |
| MS.gene41014.t1 | AT5G41400 | 32.500 | 80 | 52 | 1 | 84 | 161 | 86 | 165 | 3.48e-11 | 58.9 |
| MS.gene41014.t1 | AT5G56340 | 53.488 | 43 | 19 | 1 | 103 | 145 | 259 | 300 | 3.60e-11 | 60.8 |
| MS.gene41014.t1 | AT1G74410 | 48.936 | 47 | 24 | 0 | 101 | 147 | 174 | 220 | 3.69e-11 | 59.7 |
| MS.gene41014.t1 | AT5G66160 | 30.645 | 124 | 66 | 4 | 23 | 145 | 170 | 274 | 3.97e-11 | 60.5 |
| MS.gene41014.t1 | AT2G17450 | 34.211 | 76 | 46 | 1 | 74 | 145 | 69 | 144 | 4.38e-11 | 58.9 |
| MS.gene41014.t1 | AT5G66160 | 30.645 | 124 | 66 | 4 | 23 | 145 | 170 | 274 | 5.25e-11 | 60.1 |
| MS.gene41014.t1 | AT5G47610 | 34.615 | 78 | 47 | 2 | 84 | 160 | 90 | 164 | 5.38e-11 | 58.5 |
| MS.gene41014.t1 | AT1G14200 | 39.394 | 66 | 35 | 3 | 80 | 145 | 90 | 150 | 5.62e-11 | 58.5 |
| MS.gene41014.t1 | AT5G20910 | 39.130 | 69 | 40 | 2 | 77 | 145 | 205 | 271 | 8.84e-11 | 59.3 |
| MS.gene41014.t1 | AT3G19910 | 40.845 | 71 | 39 | 2 | 74 | 144 | 261 | 328 | 8.98e-11 | 59.7 |
| MS.gene41014.t1 | AT1G53820 | 32.323 | 99 | 57 | 3 | 50 | 147 | 75 | 164 | 9.94e-11 | 59.3 |
Find 35 sgRNAs with CRISPR-Local
Find 34 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAAGGTTCTATACATTTA+AGG | 0.136427 | 1.3:+41331943 | None:intergenic |
| ACTGATTCATCTGGCTTCTT+TGG | 0.171069 | 1.3:-41332311 | MS.gene41014:CDS |
| CAACATTCAATACTTGATTT+TGG | 0.212470 | 1.3:-41332125 | MS.gene41014:CDS |
| ACTTCAGAATATAACATCTT+TGG | 0.256780 | 1.3:+41332074 | None:intergenic |
| TTTCTTCTCCTAGGAGGATT+TGG | 0.262798 | 1.3:+41332179 | None:intergenic |
| ACATGTTGTTCTATATGTTT+AGG | 0.298420 | 1.3:-41332023 | MS.gene41014:CDS |
| GAATCTCTTCTTGTTGCTAA+TGG | 0.302059 | 1.3:+41331840 | None:intergenic |
| TCCAATGACATAAGTGGATT+TGG | 0.322523 | 1.3:-41332287 | MS.gene41014:CDS |
| GACATAAGTGGATTTGGTTA+TGG | 0.347416 | 1.3:-41332281 | MS.gene41014:CDS |
| AACACCTCTTTCAACACCTT+TGG | 0.358311 | 1.3:-41331874 | MS.gene41014:CDS |
| GTTGAAAGAGGTGTTGGAAT+TGG | 0.400700 | 1.3:+41331882 | None:intergenic |
| TTTGGCTCCAATGACATAAG+TGG | 0.427640 | 1.3:-41332293 | MS.gene41014:CDS |
| AGCAACAAGAAGAGATTCAT+AGG | 0.431137 | 1.3:-41331835 | None:intergenic |
| ACCAAATCCACTTATGTCAT+TGG | 0.434193 | 1.3:+41332286 | None:intergenic |
| TTATTGTTGTTTCTTCTCCT+AGG | 0.452542 | 1.3:+41332170 | None:intergenic |
| AATGTATAGAACCTTGGTTA+AGG | 0.476259 | 1.3:-41331938 | MS.gene41014:CDS |
| AACAACTCAACTGATTCATC+TGG | 0.476744 | 1.3:-41332320 | MS.gene41014:CDS |
| TGAAACATATGTTTACAATC+AGG | 0.479218 | 1.3:+41331966 | None:intergenic |
| ACCTTAAATGTATAGAACCT+TGG | 0.480383 | 1.3:-41331944 | MS.gene41014:CDS |
| AGTGGATTTGGTTATGGCAT+AGG | 0.506561 | 1.3:-41332275 | MS.gene41014:CDS |
| GTTCTACAAAGAGGACAAGA+AGG | 0.540099 | 1.3:+41331909 | None:intergenic |
| TTGTGATCTTGTGCAAAAGT+AGG | 0.543758 | 1.3:+41332205 | None:intergenic |
| AAAGGTGTTGAAAGAGGTGT+TGG | 0.546373 | 1.3:+41331876 | None:intergenic |
| CACAAGTTCCAAATCCTCCT+AGG | 0.549021 | 1.3:-41332187 | MS.gene41014:CDS |
| TATGGCATAGGAATTTCCAT+TGG | 0.558425 | 1.3:-41332263 | MS.gene41014:CDS |
| TTGTTGTTTCTTCTCCTAGG+AGG | 0.575481 | 1.3:+41332173 | None:intergenic |
| AATGAGCAAAAGAATACCAA+TGG | 0.578145 | 1.3:+41332247 | None:intergenic |
| TCAGCCAAAGGTGTTGAAAG+AGG | 0.579723 | 1.3:+41331870 | None:intergenic |
| AAATCAAGTATTGAATGTTG+AGG | 0.604971 | 1.3:+41332128 | None:intergenic |
| TATAGAACAACATGTTGATG+TGG | 0.606000 | 1.3:+41332031 | None:intergenic |
| AATGGAACAACTTCAGCCAA+AGG | 0.633039 | 1.3:+41331858 | None:intergenic |
| ATTGGAGAAGTTCTACAAAG+AGG | 0.650036 | 1.3:+41331900 | None:intergenic |
| TGATCTTGTGCAAAAGTAGG+AGG | 0.664646 | 1.3:+41332208 | None:intergenic |
| GAAGGATGTATCCTTAACCA+AGG | 0.682053 | 1.3:+41331927 | None:intergenic |
| ATATGTTTAGGTGATTACAA+AGG | 0.686676 | 1.3:-41332011 | MS.gene41014:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ACATGTTGTTCTATATGTTT+AGG | - | chr1.3:41332136-41332155 | MS.gene41014:CDS | 25.0% |
| ! | ACTTCAGAATATAACATCTT+TGG | + | chr1.3:41332088-41332107 | None:intergenic | 25.0% |
| ! | ATATGTTTAGGTGATTACAA+AGG | - | chr1.3:41332148-41332167 | MS.gene41014:CDS | 25.0% |
| ! | TGAAACATATGTTTACAATC+AGG | + | chr1.3:41332196-41332215 | None:intergenic | 25.0% |
| !! | CAACATTCAATACTTGATTT+TGG | - | chr1.3:41332034-41332053 | MS.gene41014:CDS | 25.0% |
| !!! | AAATCAAGTATTGAATGTTG+AGG | + | chr1.3:41332034-41332053 | None:intergenic | 25.0% |
| AATGAGCAAAAGAATACCAA+TGG | + | chr1.3:41331915-41331934 | None:intergenic | 30.0% | |
| AATGTATAGAACCTTGGTTA+AGG | - | chr1.3:41332221-41332240 | MS.gene41014:CDS | 30.0% | |
| ACCAAGGTTCTATACATTTA+AGG | + | chr1.3:41332219-41332238 | None:intergenic | 30.0% | |
| ACCTTAAATGTATAGAACCT+TGG | - | chr1.3:41332215-41332234 | MS.gene41014:CDS | 30.0% | |
| TATAGAACAACATGTTGATG+TGG | + | chr1.3:41332131-41332150 | None:intergenic | 30.0% | |
| !! | TTATTGTTGTTTCTTCTCCT+AGG | + | chr1.3:41331992-41332011 | None:intergenic | 30.0% |
| ACCAAATCCACTTATGTCAT+TGG | + | chr1.3:41331876-41331895 | None:intergenic | 35.0% | |
| ATTGGAGAAGTTCTACAAAG+AGG | + | chr1.3:41332262-41332281 | None:intergenic | 35.0% | |
| GAATCTCTTCTTGTTGCTAA+TGG | + | chr1.3:41332322-41332341 | None:intergenic | 35.0% | |
| TATGGCATAGGAATTTCCAT+TGG | - | chr1.3:41331896-41331915 | MS.gene41014:CDS | 35.0% | |
| TTGTGATCTTGTGCAAAAGT+AGG | + | chr1.3:41331957-41331976 | None:intergenic | 35.0% | |
| ! | AACAACTCAACTGATTCATC+TGG | - | chr1.3:41331839-41331858 | MS.gene41014:CDS | 35.0% |
| ! | GACATAAGTGGATTTGGTTA+TGG | - | chr1.3:41331878-41331897 | MS.gene41014:CDS | 35.0% |
| ! | TCCAATGACATAAGTGGATT+TGG | - | chr1.3:41331872-41331891 | MS.gene41014:CDS | 35.0% |
| AACACCTCTTTCAACACCTT+TGG | - | chr1.3:41332285-41332304 | MS.gene41014:CDS | 40.0% | |
| AATGGAACAACTTCAGCCAA+AGG | + | chr1.3:41332304-41332323 | None:intergenic | 40.0% | |
| GAAGGATGTATCCTTAACCA+AGG | + | chr1.3:41332235-41332254 | None:intergenic | 40.0% | |
| GTTCTACAAAGAGGACAAGA+AGG | + | chr1.3:41332253-41332272 | None:intergenic | 40.0% | |
| TGATCTTGTGCAAAAGTAGG+AGG | + | chr1.3:41331954-41331973 | None:intergenic | 40.0% | |
| TTTCTTCTCCTAGGAGGATT+TGG | + | chr1.3:41331983-41332002 | None:intergenic | 40.0% | |
| ! | ACTGATTCATCTGGCTTCTT+TGG | - | chr1.3:41331848-41331867 | MS.gene41014:CDS | 40.0% |
| ! | AGTGGATTTGGTTATGGCAT+AGG | - | chr1.3:41331884-41331903 | MS.gene41014:CDS | 40.0% |
| ! | TTTGGCTCCAATGACATAAG+TGG | - | chr1.3:41331866-41331885 | MS.gene41014:CDS | 40.0% |
| !! | AAAGGTGTTGAAAGAGGTGT+TGG | + | chr1.3:41332286-41332305 | None:intergenic | 40.0% |
| !! | GTTGAAAGAGGTGTTGGAAT+TGG | + | chr1.3:41332280-41332299 | None:intergenic | 40.0% |
| !! | TTGTTGTTTCTTCTCCTAGG+AGG | + | chr1.3:41331989-41332008 | None:intergenic | 40.0% |
| CACAAGTTCCAAATCCTCCT+AGG | - | chr1.3:41331972-41331991 | MS.gene41014:CDS | 45.0% | |
| !! | TCAGCCAAAGGTGTTGAAAG+AGG | + | chr1.3:41332292-41332311 | None:intergenic | 45.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 41331836 | 41332345 | 41331836 | ID=MS.gene41014 |
| chr1.3 | mRNA | 41331836 | 41332345 | 41331836 | ID=MS.gene41014.t1;Parent=MS.gene41014 |
| chr1.3 | exon | 41331836 | 41332345 | 41331836 | ID=MS.gene41014.t1.exon1;Parent=MS.gene41014.t1 |
| chr1.3 | CDS | 41331836 | 41332345 | 41331836 | ID=cds.MS.gene41014.t1;Parent=MS.gene41014.t1 |
| Gene Sequence |
| Protein sequence |
