Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49281.t1 | RHN80033.1 | 94.7 | 76 | 4 | 0 | 34 | 109 | 532 | 607 | 8.00E-32 | 146.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49281.t1 | Q6Q1P4 | 85.5 | 76 | 11 | 0 | 34 | 109 | 1127 | 1202 | 2.9e-30 | 132.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49281.t1 | A0A072VWQ4 | 94.7 | 76 | 4 | 0 | 34 | 109 | 1125 | 1200 | 5.7e-32 | 146.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene49281 | 0.808425 | 3.12E-50 | -1.69E-46 |
| MS.gene049159 | MS.gene49281 | 0.834485 | 2.92E-56 | -1.69E-46 |
| MS.gene049254 | MS.gene49281 | 0.841486 | 4.61E-58 | -1.69E-46 |
| MS.gene049272 | MS.gene49281 | 0.804743 | 1.87E-49 | -1.69E-46 |
| MS.gene049343 | MS.gene49281 | 0.812135 | 4.94E-51 | -1.69E-46 |
| MS.gene049404 | MS.gene49281 | 0.822914 | 1.84E-53 | -1.69E-46 |
| MS.gene049435 | MS.gene49281 | 0.815208 | 1.04E-51 | -1.69E-46 |
| MS.gene049452 | MS.gene49281 | 0.808908 | 2.46E-50 | -1.69E-46 |
| MS.gene049501 | MS.gene49281 | 0.805609 | 1.23E-49 | -1.69E-46 |
| MS.gene049825 | MS.gene49281 | 0.803211 | 3.89E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene49281 | 0.832911 | 7.21E-56 | -1.69E-46 |
| MS.gene049873 | MS.gene49281 | 0.810548 | 1.09E-50 | -1.69E-46 |
| MS.gene050026 | MS.gene49281 | 0.822148 | 2.77E-53 | -1.69E-46 |
| MS.gene050156 | MS.gene49281 | 0.81497 | 1.17E-51 | -1.69E-46 |
| MS.gene050355 | MS.gene49281 | 0.804396 | 2.20E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene49281 | 0.840414 | 8.82E-58 | -1.69E-46 |
| MS.gene050561 | MS.gene49281 | 0.804993 | 1.65E-49 | -1.69E-46 |
| MS.gene050759 | MS.gene49281 | 0.822343 | 2.49E-53 | -1.69E-46 |
| MS.gene050844 | MS.gene49281 | 0.807159 | 5.79E-50 | -1.69E-46 |
| MS.gene050962 | MS.gene49281 | 0.81334 | 2.69E-51 | -1.69E-46 |
| MS.gene051198 | MS.gene49281 | 0.818067 | 2.38E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene49281 | 0.822933 | 1.82E-53 | -1.69E-46 |
| MS.gene051279 | MS.gene49281 | 0.808582 | 2.88E-50 | -1.69E-46 |
| MS.gene051594 | MS.gene49281 | 0.801956 | 7.05E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene49281 | 0.820221 | 7.69E-53 | -1.69E-46 |
| MS.gene051720 | MS.gene49281 | 0.820315 | 7.32E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene49281 | 0.825988 | 3.47E-54 | -1.69E-46 |
| MS.gene052012 | MS.gene49281 | 0.806179 | 9.33E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene49281 | 0.814085 | 1.84E-51 | -1.69E-46 |
| MS.gene052190 | MS.gene49281 | 0.805045 | 1.61E-49 | -1.69E-46 |
| MS.gene052333 | MS.gene49281 | 0.81943 | 1.17E-52 | -1.69E-46 |
| MS.gene052384 | MS.gene49281 | 0.803507 | 3.37E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene49281 | 0.806423 | 8.29E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene49281 | 0.818714 | 1.70E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene49281 | 0.860655 | 1.78E-63 | -1.69E-46 |
| MS.gene052582 | MS.gene49281 | 0.830383 | 3.03E-55 | -1.69E-46 |
| MS.gene052584 | MS.gene49281 | 0.847765 | 9.40E-60 | -1.69E-46 |
| MS.gene052611 | MS.gene49281 | 0.818558 | 1.84E-52 | -1.69E-46 |
| MS.gene052773 | MS.gene49281 | 0.83478 | 2.46E-56 | -1.69E-46 |
| MS.gene052863 | MS.gene49281 | 0.834877 | 2.32E-56 | -1.69E-46 |
| MS.gene052896 | MS.gene49281 | 0.804826 | 1.79E-49 | -1.69E-46 |
| MS.gene053008 | MS.gene49281 | 0.810688 | 1.02E-50 | -1.69E-46 |
| MS.gene053145 | MS.gene49281 | 0.810848 | 9.40E-51 | -1.69E-46 |
| MS.gene053166 | MS.gene49281 | 0.814904 | 1.21E-51 | -1.69E-46 |
| MS.gene053221 | MS.gene49281 | 0.810066 | 1.39E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene49281 | 0.853209 | 2.78E-61 | -1.69E-46 |
| MS.gene053621 | MS.gene49281 | 0.801891 | 7.27E-49 | -1.69E-46 |
| MS.gene053966 | MS.gene49281 | 0.822342 | 2.49E-53 | -1.69E-46 |
| MS.gene05415 | MS.gene49281 | 0.830189 | 3.38E-55 | -1.69E-46 |
| MS.gene054236 | MS.gene49281 | 0.837135 | 6.21E-57 | -1.69E-46 |
| MS.gene05423 | MS.gene49281 | 0.805843 | 1.10E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene49281 | -0.817361 | 3.43E-52 | -1.69E-46 |
| MS.gene054467 | MS.gene49281 | 0.815146 | 1.07E-51 | -1.69E-46 |
| MS.gene054472 | MS.gene49281 | 0.806007 | 1.01E-49 | -1.69E-46 |
| MS.gene054559 | MS.gene49281 | 0.807272 | 5.48E-50 | -1.69E-46 |
| MS.gene05458 | MS.gene49281 | 0.805312 | 1.42E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene49281 | 0.864856 | 9.00E-65 | -1.69E-46 |
| MS.gene054775 | MS.gene49281 | 0.836931 | 7.01E-57 | -1.69E-46 |
| MS.gene055166 | MS.gene49281 | 0.824763 | 6.77E-54 | -1.69E-46 |
| MS.gene055227 | MS.gene49281 | 0.811419 | 7.07E-51 | -1.69E-46 |
| MS.gene055357 | MS.gene49281 | 0.80646 | 8.14E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene49281 | 0.829203 | 5.87E-55 | -1.69E-46 |
| MS.gene055586 | MS.gene49281 | 0.820332 | 7.25E-53 | -1.69E-46 |
| MS.gene055589 | MS.gene49281 | 0.815408 | 9.39E-52 | -1.69E-46 |
| MS.gene055778 | MS.gene49281 | 0.836771 | 7.70E-57 | -1.69E-46 |
| MS.gene055818 | MS.gene49281 | 0.84752 | 1.10E-59 | -1.69E-46 |
| MS.gene055926 | MS.gene49281 | 0.814529 | 1.47E-51 | -1.69E-46 |
| MS.gene05604 | MS.gene49281 | 0.824152 | 9.42E-54 | -1.69E-46 |
| MS.gene056050 | MS.gene49281 | 0.811345 | 7.34E-51 | -1.69E-46 |
| MS.gene056162 | MS.gene49281 | 0.801297 | 9.62E-49 | -1.69E-46 |
| MS.gene056173 | MS.gene49281 | 0.823175 | 1.60E-53 | -1.69E-46 |
| MS.gene056174 | MS.gene49281 | 0.807335 | 5.32E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene49281 | 0.832775 | 7.80E-56 | -1.69E-46 |
| MS.gene056498 | MS.gene49281 | 0.80408 | 2.56E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene49281 | 0.816771 | 4.66E-52 | -1.69E-46 |
| MS.gene056595 | MS.gene49281 | 0.830148 | 3.46E-55 | -1.69E-46 |
| MS.gene05686 | MS.gene49281 | 0.806151 | 9.45E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene49281 | 0.814261 | 1.69E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene49281 | 0.802081 | 6.64E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene49281 | 0.825533 | 4.45E-54 | -1.69E-46 |
| MS.gene057444 | MS.gene49281 | 0.807241 | 5.57E-50 | -1.69E-46 |
| MS.gene057693 | MS.gene49281 | 0.835488 | 1.63E-56 | -1.69E-46 |
| MS.gene057869 | MS.gene49281 | 0.81637 | 5.73E-52 | -1.69E-46 |
| MS.gene057915 | MS.gene49281 | 0.829042 | 6.42E-55 | -1.69E-46 |
| MS.gene058009 | MS.gene49281 | 0.81336 | 2.66E-51 | -1.69E-46 |
| MS.gene058010 | MS.gene49281 | 0.81169 | 6.17E-51 | -1.69E-46 |
| MS.gene058037 | MS.gene49281 | 0.845115 | 4.97E-59 | -1.69E-46 |
| MS.gene058625 | MS.gene49281 | 0.848591 | 5.56E-60 | -1.69E-46 |
| MS.gene058636 | MS.gene49281 | 0.81579 | 7.72E-52 | -1.69E-46 |
| MS.gene058829 | MS.gene49281 | 0.816789 | 4.61E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene49281 | 0.830364 | 3.06E-55 | -1.69E-46 |
| MS.gene059272 | MS.gene49281 | 0.822784 | 1.97E-53 | -1.69E-46 |
| MS.gene05954 | MS.gene49281 | 0.811656 | 6.28E-51 | -1.69E-46 |
| MS.gene059625 | MS.gene49281 | 0.817013 | 4.11E-52 | -1.69E-46 |
| MS.gene059842 | MS.gene49281 | 0.838211 | 3.29E-57 | -1.69E-46 |
| MS.gene060011 | MS.gene49281 | 0.815549 | 8.73E-52 | -1.69E-46 |
| MS.gene060310 | MS.gene49281 | 0.808623 | 2.83E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene49281 | 0.820858 | 5.49E-53 | -1.69E-46 |
| MS.gene060521 | MS.gene49281 | 0.800942 | 1.14E-48 | -1.69E-46 |
| MS.gene06052 | MS.gene49281 | 0.823353 | 1.45E-53 | -1.69E-46 |
| MS.gene060572 | MS.gene49281 | 0.815712 | 8.03E-52 | -1.69E-46 |
| MS.gene060802 | MS.gene49281 | 0.802612 | 5.16E-49 | -1.69E-46 |
| MS.gene060803 | MS.gene49281 | 0.833416 | 5.40E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49281.t1 | MTR_1g069910 | 94.737 | 76 | 4 | 0 | 34 | 109 | 1125 | 1200 | 2.15e-43 | 150 |
| MS.gene49281.t1 | MTR_0003s0460 | 76.000 | 75 | 18 | 0 | 34 | 108 | 1117 | 1191 | 3.20e-32 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49281.t1 | AT3G54670 | 85.526 | 76 | 11 | 0 | 34 | 109 | 1127 | 1202 | 2.26e-38 | 136 |
Find 35 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAATTTATTACTTTATA+CGG | 0.210014 | 1.1:+52049545 | None:intergenic |
| AAGCGTTAGTTGGGGTTTAC+AGG | 0.284648 | 1.1:-52049031 | MS.gene49281:CDS |
| TTGAATGTTGCAAAGGTTGC+TGG | 0.339404 | 1.1:-52049167 | MS.gene49281:CDS |
| GGGAATAGAAGGGGAAGAAG+AGG | 0.361180 | 1.1:-52049575 | MS.gene49281:CDS |
| TAATGACGGTGACGGGCAAT+TGG | 0.366212 | 1.1:-52049609 | MS.gene49281:CDS |
| GGGCAATTGGGGTGTGGTGA+TGG | 0.388931 | 1.1:-52049596 | MS.gene49281:CDS |
| CAGGATGCTGATGCCGGATC+TGG | 0.418635 | 1.1:-52049104 | MS.gene49281:CDS |
| GGAATAGAAGGGGAAGAAGA+GGG | 0.421335 | 1.1:-52049574 | MS.gene49281:CDS |
| ACAAAGCTGAAGCGTTAGTT+GGG | 0.423474 | 1.1:-52049040 | MS.gene49281:CDS |
| TGAAGGAGCAAGGACTAATC+AGG | 0.426310 | 1.1:-52049123 | MS.gene49281:CDS |
| AATGACGGTGACGGGCAATT+GGG | 0.442569 | 1.1:-52049608 | MS.gene49281:CDS |
| GACAAAGCTGAAGCGTTAGT+TGG | 0.453493 | 1.1:-52049041 | MS.gene49281:CDS |
| ATAAACATGGTCACTGAGAT+TGG | 0.460733 | 1.1:-52049643 | None:intergenic |
| GGCAATTGGGGTGTGGTGAT+GGG | 0.462881 | 1.1:-52049595 | MS.gene49281:CDS |
| GGTGTGGTGATGGGAATAGA+AGG | 0.482363 | 1.1:-52049586 | MS.gene49281:CDS |
| TGTGGTGATGGGAATAGAAG+GGG | 0.501049 | 1.1:-52049584 | MS.gene49281:CDS |
| GGTGACGGGCAATTGGGGTG+TGG | 0.517394 | 1.1:-52049602 | MS.gene49281:CDS |
| ACTAATCAGGATGCTGATGC+CGG | 0.528971 | 1.1:-52049110 | MS.gene49281:CDS |
| GGATGAAGTTGATGCTGCAT+TGG | 0.534054 | 1.1:-52049195 | MS.gene49281:CDS |
| GAATAGAAGGGGAAGAAGAG+GGG | 0.538833 | 1.1:-52049573 | MS.gene49281:CDS |
| AATACTCTGAAAACCAGATC+CGG | 0.539223 | 1.1:+52049091 | None:intergenic |
| CAAAATCTTGTGAAGGAGCA+AGG | 0.545040 | 1.1:-52049133 | MS.gene49281:CDS |
| ATTCGTTCAAAATCTTGTGA+AGG | 0.547590 | 1.1:-52049140 | MS.gene49281:CDS |
| GTTTACAGGGACTCTGAAAG+AGG | 0.559697 | 1.1:-52049017 | MS.gene49281:CDS |
| AGCGTTAGTTGGGGTTTACA+GGG | 0.560955 | 1.1:-52049030 | MS.gene49281:CDS |
| GGTTGTGTAATGACGGTGAC+GGG | 0.561095 | 1.1:-52049616 | MS.gene49281:CDS |
| TGGTGGTGGTTGTGTAATGA+CGG | 0.578928 | 1.1:-52049623 | MS.gene49281:CDS |
| GTGTGGTGATGGGAATAGAA+GGG | 0.581151 | 1.1:-52049585 | MS.gene49281:CDS |
| ATGACGGTGACGGGCAATTG+GGG | 0.590556 | 1.1:-52049607 | MS.gene49281:CDS |
| GGACAACTTGAATGTTGCAA+AGG | 0.602237 | 1.1:-52049174 | MS.gene49281:CDS |
| CAAAGCTGAAGCGTTAGTTG+GGG | 0.618753 | 1.1:-52049039 | MS.gene49281:CDS |
| TTTACAGGGACTCTGAAAGA+GGG | 0.636295 | 1.1:-52049016 | None:intergenic |
| ATGGTCACTGAGATTGGTGG+TGG | 0.660935 | 1.1:-52049637 | MS.gene49281:CDS |
| TGGTTGTGTAATGACGGTGA+CGG | 0.698634 | 1.1:-52049617 | MS.gene49281:CDS |
| AACATGGTCACTGAGATTGG+TGG | 0.714202 | 1.1:-52049640 | MS.gene49281:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAATTTATTACTTTATA+CGG | + | chr1.1:52049112-52049131 | None:intergenic | 10.0% |
| !!! | TTGAACAATAATATTTTAGA+TGG | - | chr1.1:52049286-52049305 | MS.gene49281:intron | 15.0% |
| !!! | TAGATGGTTGTTTAAATTTT+GGG | - | chr1.1:52049302-52049321 | MS.gene49281:intron | 20.0% |
| !!! | TTAGATGGTTGTTTAAATTT+TGG | - | chr1.1:52049301-52049320 | MS.gene49281:intron | 20.0% |
| !!! | TTGCTTATATTTTCAGTTTT+AGG | - | chr1.1:52049416-52049435 | MS.gene49281:intron | 20.0% |
| ! | AAAATAGTTTGATGGAGATT+TGG | - | chr1.1:52049365-52049384 | MS.gene49281:intron | 25.0% |
| ! | AAACTGAAAATATAAGCAAG+TGG | + | chr1.1:52049415-52049434 | None:intergenic | 25.0% |
| ! | AGAAAACAAGGTAAAAACAA+TGG | + | chr1.1:52049225-52049244 | None:intergenic | 25.0% |
| ! | TTTGCCTAAAAATAGTTTGA+TGG | - | chr1.1:52049357-52049376 | MS.gene49281:intron | 25.0% |
| !! | ATCTTTGAAAACAGAAAACA+AGG | + | chr1.1:52049237-52049256 | None:intergenic | 25.0% |
| !!! | ATCTCCATCAAACTATTTTT+AGG | + | chr1.1:52049364-52049383 | None:intergenic | 25.0% |
| AACAAGGTAAAAACAATGGA+TGG | + | chr1.1:52049221-52049240 | None:intergenic | 30.0% | |
| ACTTCATCCAGTTTGAAAAA+TGG | + | chr1.1:52049448-52049467 | None:intergenic | 30.0% | |
| ATTCGTTCAAAATCTTGTGA+AGG | - | chr1.1:52049514-52049533 | MS.gene49281:intron | 30.0% | |
| !!! | ACAATGGATGGTTTTATGAT+TGG | + | chr1.1:52049209-52049228 | None:intergenic | 30.0% |
| !!! | CAATGGATGGTTTTATGATT+GGG | + | chr1.1:52049208-52049227 | None:intergenic | 30.0% |
| AAAAACCAGTTGGCACATTA+AGG | + | chr1.1:52049137-52049156 | None:intergenic | 35.0% | |
| TCCAGTTTGAAAAATGGTGA+AGG | + | chr1.1:52049442-52049461 | None:intergenic | 35.0% | |
| ! | AAACCATGTTAATGGACATG+TGG | + | chr1.1:52049392-52049411 | None:intergenic | 35.0% |
| ! | AATACTCTGAAAACCAGATC+CGG | + | chr1.1:52049566-52049585 | None:intergenic | 35.0% |
| AATATGCACCCGTTAGAGTA+AGG | + | chr1.1:52049178-52049197 | None:intergenic | 40.0% | |
| ACCCATGAACCTTACTCTAA+CGG | - | chr1.1:52049166-52049185 | MS.gene49281:CDS | 40.0% | |
| CAAAATCTTGTGAAGGAGCA+AGG | - | chr1.1:52049521-52049540 | MS.gene49281:intron | 40.0% | |
| GCAAGTGGAAACCATGTTAA+TGG | + | chr1.1:52049400-52049419 | None:intergenic | 40.0% | |
| GGACAACTTGAATGTTGCAA+AGG | - | chr1.1:52049480-52049499 | MS.gene49281:intron | 40.0% | |
| TGGACCATTGAAAAACCAGT+TGG | + | chr1.1:52049147-52049166 | None:intergenic | 40.0% | |
| TTGAATGTTGCAAAGGTTGC+TGG | - | chr1.1:52049487-52049506 | MS.gene49281:intron | 40.0% | |
| ! | ACAAAGCTGAAGCGTTAGTT+GGG | - | chr1.1:52049614-52049633 | MS.gene49281:CDS | 40.0% |
| ! | ACTCTAACGGGTGCATATTA+GGG | - | chr1.1:52049179-52049198 | MS.gene49281:CDS | 40.0% |
| ! | CTTTTCCTTAATGTGCCAAC+TGG | - | chr1.1:52049129-52049148 | MS.gene49281:CDS | 40.0% |
| ! | TACTCTAACGGGTGCATATT+AGG | - | chr1.1:52049178-52049197 | MS.gene49281:CDS | 40.0% |
| !! | GCCTTCACCATTTTTCAAAC+TGG | - | chr1.1:52049438-52049457 | MS.gene49281:intron | 40.0% |
| !!! | TGTGCCAACTGGTTTTTCAA+TGG | - | chr1.1:52049140-52049159 | MS.gene49281:CDS | 40.0% |
| AAGCGTTAGTTGGGGTTTAC+AGG | - | chr1.1:52049623-52049642 | MS.gene49281:CDS | 45.0% | |
| ACCCGTTAGAGTAAGGTTCA+TGG | + | chr1.1:52049171-52049190 | None:intergenic | 45.0% | |
| ACTAATCAGGATGCTGATGC+CGG | - | chr1.1:52049544-52049563 | MS.gene49281:intron | 45.0% | |
| AGCGTTAGTTGGGGTTTACA+GGG | - | chr1.1:52049624-52049643 | MS.gene49281:CDS | 45.0% | |
| CCCATGAACCTTACTCTAAC+GGG | - | chr1.1:52049167-52049186 | MS.gene49281:CDS | 45.0% | |
| CCCGTTAGAGTAAGGTTCAT+GGG | + | chr1.1:52049170-52049189 | None:intergenic | 45.0% | |
| GAATAGAAGGGGAAGAAGAG+GGG | - | chr1.1:52049081-52049100 | MS.gene49281:CDS | 45.0% | |
| GGAATAGAAGGGGAAGAAGA+GGG | - | chr1.1:52049080-52049099 | MS.gene49281:CDS | 45.0% | |
| GGTCCACATGTCCATTAACA+TGG | - | chr1.1:52049386-52049405 | MS.gene49281:intron | 45.0% | |
| GTTAGAGTAAGGTTCATGGG+TGG | + | chr1.1:52049167-52049186 | None:intergenic | 45.0% | |
| TGAAGGAGCAAGGACTAATC+AGG | - | chr1.1:52049531-52049550 | MS.gene49281:intron | 45.0% | |
| TGGTTGTGTAATGACGGTGA+CGG | - | chr1.1:52049037-52049056 | MS.gene49281:CDS | 45.0% | |
| ! | CAAAGCTGAAGCGTTAGTTG+GGG | - | chr1.1:52049615-52049634 | MS.gene49281:CDS | 45.0% |
| ! | CTCTAACGGGTGCATATTAG+GGG | - | chr1.1:52049180-52049199 | MS.gene49281:CDS | 45.0% |
| ! | GACAAAGCTGAAGCGTTAGT+TGG | - | chr1.1:52049613-52049632 | MS.gene49281:CDS | 45.0% |
| ! | GTTTACAGGGACTCTGAAAG+AGG | - | chr1.1:52049637-52049656 | MS.gene49281:CDS | 45.0% |
| !! | GGATGAAGTTGATGCTGCAT+TGG | - | chr1.1:52049459-52049478 | MS.gene49281:intron | 45.0% |
| !! | GTGTGGTGATGGGAATAGAA+GGG | - | chr1.1:52049069-52049088 | MS.gene49281:CDS | 45.0% |
| !! | TGGTGGTGGTTGTGTAATGA+CGG | - | chr1.1:52049031-52049050 | MS.gene49281:CDS | 45.0% |
| !! | TGTGGTGATGGGAATAGAAG+GGG | - | chr1.1:52049070-52049089 | MS.gene49281:CDS | 45.0% |
| ATGGTCACTGAGATTGGTGG+TGG | - | chr1.1:52049017-52049036 | MS.gene49281:CDS | 50.0% | |
| GGGAATAGAAGGGGAAGAAG+AGG | - | chr1.1:52049079-52049098 | MS.gene49281:CDS | 50.0% | |
| GGTTGTGTAATGACGGTGAC+GGG | - | chr1.1:52049038-52049057 | MS.gene49281:CDS | 50.0% | |
| !! | AATGACGGTGACGGGCAATT+GGG | - | chr1.1:52049046-52049065 | MS.gene49281:CDS | 50.0% |
| !! | GGTGTGGTGATGGGAATAGA+AGG | - | chr1.1:52049068-52049087 | MS.gene49281:CDS | 50.0% |
| !! | TAATGACGGTGACGGGCAAT+TGG | - | chr1.1:52049045-52049064 | MS.gene49281:CDS | 50.0% |
| GGCAATTGGGGTGTGGTGAT+GGG | - | chr1.1:52049059-52049078 | MS.gene49281:CDS | 55.0% | |
| !! | ATGACGGTGACGGGCAATTG+GGG | - | chr1.1:52049047-52049066 | MS.gene49281:CDS | 55.0% |
| CAGGATGCTGATGCCGGATC+TGG | - | chr1.1:52049550-52049569 | MS.gene49281:intron | 60.0% | |
| GGGCAATTGGGGTGTGGTGA+TGG | - | chr1.1:52049058-52049077 | MS.gene49281:CDS | 60.0% | |
| !! | GGTGACGGGCAATTGGGGTG+TGG | - | chr1.1:52049052-52049071 | MS.gene49281:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 52049017 | 52049659 | 52049017 | ID=MS.gene49281 |
| chr1.1 | mRNA | 52049017 | 52049659 | 52049017 | ID=MS.gene49281.t1;Parent=MS.gene49281 |
| chr1.1 | exon | 52049559 | 52049659 | 52049559 | ID=MS.gene49281.t1.exon1;Parent=MS.gene49281.t1 |
| chr1.1 | CDS | 52049559 | 52049659 | 52049559 | ID=cds.MS.gene49281.t1;Parent=MS.gene49281.t1 |
| chr1.1 | exon | 52049017 | 52049244 | 52049017 | ID=MS.gene49281.t1.exon2;Parent=MS.gene49281.t1 |
| chr1.1 | CDS | 52049017 | 52049244 | 52049017 | ID=cds.MS.gene49281.t1;Parent=MS.gene49281.t1 |
| Gene Sequence |
| Protein sequence |
